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When I run the following I get the results I am looking for:
entrez_link(db="taxonomy",
dbfrom="protein",
id=c("QNO56202.1","RCV65969.1","OYV13592.1",
"WP_138323301.1","WP_007546357.1","KPJ68349.1",
"RLB10506.1"), by_id=TRUE)
However, if I run any protein id of a MAG thats on NCBI it errors out, for example:
However, if I take that same accession number and put it in NCBI, I get the result I am looking for:
Am I doing something wrong?
The text was updated successfully, but these errors were encountered:
The last comment on this biostars question suggests that error occurs when the ID does not exist in the entrez system. The error is not due to rentrez. I suggest you reach out to NCBI about this.
If you get a response that might help others, please share it.
When I run the following I get the results I am looking for:
entrez_link(db="taxonomy",
dbfrom="protein",
id=c("QNO56202.1","RCV65969.1","OYV13592.1",
"WP_138323301.1","WP_007546357.1","KPJ68349.1",
"RLB10506.1"), by_id=TRUE)
However, if I run any protein id of a MAG thats on NCBI it errors out, for example:
However, if I take that same accession number and put it in NCBI, I get the result I am looking for:
Am I doing something wrong?
The text was updated successfully, but these errors were encountered: