diff --git a/examples/sage-with-stylelint/theme.json b/examples/sage-with-stylelint/theme.json
index d7f8447ccb..f5f9fa2b16 100644
--- a/examples/sage-with-stylelint/theme.json
+++ b/examples/sage-with-stylelint/theme.json
@@ -1,7 +1,7 @@
 {
   "__generated__": "⚠️ This file is generated. Do not edit.",
   "$schema": "https://schemas.wp.org/trunk/theme.json",
-  "version": 2,
+  "version": 3,
   "settings": {
     "color": {
       "custom": false,
diff --git a/tests/integration/sage.test.ts b/tests/integration/sage.test.ts
index 71d7015e05..5691db0fbd 100644
--- a/tests/integration/sage.test.ts
+++ b/tests/integration/sage.test.ts
@@ -405,7 +405,7 @@ describe(`examples/sage`, () => {
             ],
           },
         },
-        "version": 2,
+        "version": 3,
       }
     `)
   })
diff --git a/tests/reproductions/issue-2126/theme.json b/tests/reproductions/issue-2126/theme.json
index 33e7e628bd..43d403fefc 100644
--- a/tests/reproductions/issue-2126/theme.json
+++ b/tests/reproductions/issue-2126/theme.json
@@ -1,7 +1,7 @@
 {
   "__generated__": "⚠️ This file is generated. Do not edit.",
   "$schema": "https://schemas.wp.org/trunk/theme.json",
-  "version": 2,
+  "version": 3,
   "settings": {
     "color": {
       "custom": false,