forked from qutip/qutip
-
Notifications
You must be signed in to change notification settings - Fork 0
293 lines (269 loc) · 11.6 KB
/
tests.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
# The name is short because we mostly care how it appears in the pull request
# "checks" dialogue box - it looks like
# Tests / ubuntu-latest, python-3.9, defaults
# or similar.
name: Tests
on:
[push, pull_request]
defaults:
run:
# The slightly odd shell call is to force bash to read .bashrc, which is
# necessary for having conda behave sensibly. We use bash as the shell even
# on Windows, since we don't run anything much complicated, and it makes
# things much simpler.
shell: bash -l -e {0}
jobs:
cases:
name: ${{ matrix.os }}, python${{ matrix.python-version }}, ${{ matrix.case-name }}
runs-on: ${{ matrix.os }}
env:
MPLBACKEND: Agg # Explicitly define matplotlib backend for Windows tests
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
# Test other versions of Python in special cases to avoid exploding the
# matrix size; make sure to test all supported versions in some form.
python-version: ["3.11"]
case-name: [defaults]
# Version 2 not yet available on conda's default channel
condaforge: [1]
numpy-build: [""]
numpy-requirement: [""]
scipy-requirement: [">=1.9"]
coverage-requirement: ["==6.5"]
# Extra special cases. In these, the new variable defined should always
# be a truth-y value (hence 'nomkl: 1' rather than 'mkl: 0'), because
# the lack of a variable is _always_ false-y, and the defaults lack all
# the special cases.
include:
- case-name: p312 numpy 2
os: ubuntu-latest
python-version: "3.12"
numpy-build: ">=2.0.0"
numpy-requirement: ">=2.0.0"
pypi: 1
- case-name: p310 numpy 1.22
os: ubuntu-latest
python-version: "3.10"
numpy-build: ">=1.22.0,<1.23.0"
numpy-requirement: ">=1.22.0,<1.23.0"
scipy-requirement: ">=1.10,<1.11"
semidefinite: 1
oldcython: 1
pypi: 1
pytest-extra-options: "-W ignore:dep_util:DeprecationWarning -W \"ignore:The 'renderer' parameter of do_3d_projection\""
# Python 3.12 and latest numpy
# Use conda-forge to provide Python 3.11 and latest numpy
- case-name: p312, numpy fallback
os: ubuntu-latest
python-version: "3.12"
numpy-requirement: ">=1.26,<1.27"
scipy-requirement: ">=1.11,<1.12"
condaforge: 1
# Install mpi4py to test mpi_pmap
# Should be enough to include this in one of the runs
includempi: 1
# Python 3.10, no mkl, scipy 1.9, numpy 1.23
# Scipy 1.9 did not support cython 3.0 yet.
# cython#17234
- case-name: p310 no mkl
os: ubuntu-latest
python-version: "3.10"
numpy-requirement: ">=1.23,<1.24"
scipy-requirement: ">=1.9,<1.10"
semidefinite: 1
condaforge: 1
oldcython: 1
nomkl: 1
pytest-extra-options: "-W ignore:dep_util:DeprecationWarning -W \"ignore:The 'renderer' parameter of do_3d_projection\""
# Mac
# Mac has issues with MKL since september 2022.
- case-name: macos
# setup-miniconda not compatible with macos-latest presently.
# https://github.com/conda-incubator/setup-miniconda/issues/344
os: macos-12
python-version: "3.12"
numpy-build: ">=2.0.0"
numpy-requirement: ">=2.0.0"
condaforge: 1
nomkl: 1
- case-name: macos - numpy fallback
os: macos-12
python-version: "3.11"
numpy-build: ">=2.0.0"
numpy-requirement: ">=1.25,<1.26"
condaforge: 1
nomkl: 1
- case-name: Windows
os: windows-latest
python-version: "3.11"
numpy-build: ">=2.0.0"
numpy-requirement: ">=2.0.0"
pypi: 1
- case-name: Windows - numpy fallback
os: windows-latest
python-version: "3.10"
numpy-build: ">=2.0.0"
numpy-requirement: ">=1.24,<1.25"
semidefinite: 1
oldcython: 1
nocython: 1
condaforge: 1
pytest-extra-options: "-W ignore:dep_util:DeprecationWarning -W \"ignore:The 'renderer' parameter of do_3d_projection\""
steps:
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
python-version: ${{ matrix.python-version }}
channels: ${{ matrix.condaforge == 1 && 'conda-forge' || 'defaults' }}
- name: Install QuTiP and dependencies
# In the run, first we handle any special cases. We do this in bash
# rather than in the GitHub Actions file directly, because bash gives us
# a proper programming language to use.
# We install without build isolation so qutip is compiled with the
# version of cython, scipy, numpy in the test matrix, not a temporary
# version use in the installation virtual environment.
run: |
# Install the extra requirement
python -m pip install pytest>=5.2 pytest-rerunfailures # tests
python -m pip install ipython # ipython
python -m pip install loky tqdm # extras
python -m pip install "coverage${{ matrix.coverage-requirement }}" chardet
python -m pip install pytest-cov coveralls pytest-fail-slow
if [[ "${{ matrix.pypi }}" ]]; then
pip install "numpy${{ matrix.numpy-build }}"
pip install "scipy${{ matrix.scipy-requirement }}"
elif [[ -z "${{ matrix.nomkl }}" ]]; then
conda install blas=*=mkl "numpy${{ matrix.numpy-build }}" "scipy${{ matrix.scipy-requirement }}"
elif [[ "${{ matrix.os }}" =~ ^windows.*$ ]]; then
# Conda doesn't supply forced nomkl builds on Windows, so we rely on
# pip not automatically linking to MKL.
pip install "numpy${{ matrix.numpy-build }}" "scipy${{ matrix.scipy-requirement }}"
else
conda install nomkl "numpy${{ matrix.numpy-build }}" "scipy${{ matrix.scipy-requirement }}"
fi
if [[ -n "${{ matrix.conda-extra-pkgs }}" ]]; then
conda install "${{ matrix.conda-extra-pkgs }}"
fi
if [[ "${{ matrix.includempi }}" ]]; then
# Use openmpi because mpich causes problems. Note, environment variable names change in v5
conda install "openmpi<5" mpi4py
fi
if [[ "${{ matrix.oldcython }}" ]]; then
python -m pip install cython==0.29.36 filelock matplotlib==3.5
else
python -m pip install cython filelock
fi
python -m pip install -e . -v --no-build-isolation
if [[ "${{ matrix.nocython }}" ]]; then
python -m pip uninstall cython -y
fi
if [[ "${{ matrix.pypi }}" ]]; then
python -m pip install "numpy${{ matrix.numpy-requirement }}"
elif [[ -z "${{ matrix.nomkl }}" ]]; then
conda install "numpy${{ matrix.numpy-requirement }}"
elif [[ "${{ matrix.os }}" =~ ^windows.*$ ]]; then
python -m pip install "numpy${{ matrix.numpy-requirement }}"
else
conda install nomkl "numpy${{ matrix.numpy-requirement }}"
fi
if [[ -n "${{ matrix.semidefinite }}" ]]; then
python -m pip install cvxpy>=1.0 cvxopt
fi
python -m pip install matplotlib>=1.2.1 # graphics
- name: Package information
run: |
conda list
python -c "import qutip; qutip.about()"
python -c "import qutip; print(qutip.settings)"
- name: Environment information
run: |
uname -a
if [[ "ubuntu-latest" == "${{ matrix.os }}" ]]; then
hostnamectl
lscpu
free -h
fi
- name: Run tests
# If our tests are running for longer than an hour, _something_ is wrong
# somewhere. The GitHub default is 6 hours, which is a bit long to wait
# to see if something hung.
timeout-minutes: 60
run: |
if [[ -n "${{ matrix.openmp }}" ]]; then
# Force OpenMP runs to use more threads, even if there aren't
# actually that many CPUs. We have to check any dispatch code is
# truly being executed.
export QUTIP_NUM_PROCESSES=2
fi
if [[ "${{ matrix.includempi }}" ]]; then
# By default, the max. number of allowed worker processes in openmpi is
# (number of physical cpu cores) - 1.
# We only have 2 physical cores, but we want to test mpi_pmap with 2 workers.
export OMPI_MCA_rmaps_base_oversubscribe=true
fi
pytest -Werror --strict-config --strict-markers --fail-slow=300 --durations=0 --durations-min=1.0 --verbosity=1 --cov=qutip --cov-report= --color=yes ${{ matrix.pytest-extra-options }} qutip/tests
# Above flags are:
# -Werror
# treat warnings as errors
# --strict-config
# error out if the configuration file is not parseable
# --strict-markers
# error out if a marker is used but not defined in the
# configuration file
# --timeout=300
# error any individual test that goes longer than the given time
# --durations=0 --durations-min=1.0
# at the end, show a list of all the tests that took longer than a
# second to run
# --verbosity=1
# turn the verbosity up so pytest prints the names of the tests
# it's currently working on
# --cov=qutip
# limit coverage reporting to code that's within the qutip package
# --cov-report=
# don't print the coverage report to the terminal---it just adds
# cruft, and we're going to upload the .coverage file to Coveralls
# --color=yes
# force coloured output in the terminal
- name: Upload to Coveralls
env:
GITHUB_TOKEN: ${{ secrets.github_token }}
COVERALLS_FLAG_NAME: ${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.case-name }}
COVERALLS_PARALLEL: true
run: coveralls --service=github
towncrier-check:
name: Verify Towncrier entry added
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Install Towncrier
run: |
python -m pip install towncrier
- name: Verify Towncrier entry added
if: github.event_name == 'pull_request'
env:
BASE_BRANCH: ${{ github.base_ref }}
run: |
# Fetch the pull request' base branch so towncrier will be able to
# compare the current branch with the base branch.
# Source: https://github.com/actions/checkout/#fetch-all-branches.
git fetch --no-tags origin +refs/heads/${BASE_BRANCH}:refs/remotes/origin/${BASE_BRANCH}
towncrier check --compare-with origin/${BASE_BRANCH}
towncrier build --version "$(cat VERSION)" --draft
finalise:
name: Finalise coverage reporting
needs: cases
runs-on: ubuntu-latest
container: python:3-slim
steps:
- name: Finalise coverage reporting
env:
GITHUB_TOKEN: ${{ secrets.github_token }}
run: |
python -m pip install coveralls
coveralls --service=github --finish