Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

TCR antigene prediction #98

Open
Ahmedalaraby20 opened this issue Jun 2, 2022 · 0 comments
Open

TCR antigene prediction #98

Ahmedalaraby20 opened this issue Jun 2, 2022 · 0 comments
Labels
enhancement New feature or request

Comments

@Ahmedalaraby20
Copy link

It would be also interesting if you could somehow integrate a function for TCR antigen prediction by comparing the TCR seqs with published TCR antigen-specific datasets, something similar to TCRmatch,
anther databases that might be of interest
VDJdb, TCRex, immuneML, TCRGP, NetTCR, ERGO ,DeepTCR, ImRex

targets <- antigen_predection(seuratobj, cellnames ="listofcellsname")

head(targets)
cellnames CDR3b CDR3a antigen score


@sheridar sheridar added the enhancement New feature or request label Jun 10, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

2 participants