_pkgdown.yml

url: https://rmgpanw.github.io/ukbwranglr/
template:
  bootstrap: 5

reference:
- title: Loading UK Biobank data
  desc: Make a data dictionary and optionally select columns to read into R +/- labels.
- contents:
  - make_data_dict
  - read_ukb

- title: Tidy clinical events data
  desc:  Convert clinical events data from multiple sources to a standardised long format table
- contents:
  - tidy_clinical_events
  - make_clinical_events_db
  - clinical_events_sources

- title: Extract phenotypes
  desc:  Identify individuals with certain phenotypes based on clinical codes
- contents:
  - extract_phenotypes
  - example_clinical_codes
  - validate_clinical_codes
  - mutate_age_at_event_cols

- title: Summarise numerical variables
  desc: Summarise all or a selection of continuous variables
- contents:
  - summarise_numerical_variables

- title: Derived variables
  desc: Commonly required derived variables
- contents:
  - derive_dob
  - derive_ethnic_background_simplified

- title: Utilites
  desc: Miscellaneous general utility functions
- contents:
  - get_ukb_data_dict
  - get_ukb_codings
  - db_tables_to_list

- title: Dummy data
  desc: Dummy UKB datasets, data dictionary and data codings
- contents:
  - get_ukb_dummy