From 08b6f542e8fd254fe14bc15d9b1afa3ac81500b4 Mon Sep 17 00:00:00 2001
From: richfitz
Date: Sun, 29 Sep 2024 17:13:23 +0000
Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20richfitz?=
=?UTF-8?q?/diversitree@5f5c13114fe33067e8ba4eb4c4efe28a2de24c9d=20?=
=?UTF-8?q?=F0=9F=9A=80?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
---
404.html | 4 +-
authors.html | 4 +-
index.html | 9 ++-
pkgdown.yml | 4 +-
reference/argnames.html | 4 +-
reference/asr-bisse.html | 4 +-
reference/asr-mkn.html | 4 +-
reference/asr.html | 4 +-
reference/big.brother.html | 4 +-
reference/check.html | 4 +-
reference/combine.html | 4 +-
reference/constants.html | 4 +-
reference/constrain.html | 4 +-
reference/diversitree-deprecated.html | 4 +-
reference/diversitree-package.html | 4 +-
reference/find.mle.html | 4 +-
reference/history.from.sim.html | 4 +-
reference/index.html | 4 +-
reference/make.bd-1.png | Bin 28976 -> 28925 bytes
reference/make.bd.html | 4 +-
reference/make.bd.split-1.png | Bin 58772 -> 59114 bytes
reference/make.bd.split.html | 4 +-
reference/make.bd.t.html | 6 +-
reference/make.bisse.html | 8 ++-
reference/make.bisse.split-1.png | Bin 59627 -> 59322 bytes
reference/make.bisse.split.html | 24 +-------
reference/make.bisse.td-1.png | Bin 55846 -> 55664 bytes
reference/make.bisse.td.html | 6 +-
reference/make.bisseness.html | 85 ++------------------------
reference/make.bm.html | 4 +-
reference/make.clade.tree.html | 4 +-
reference/make.classe.html | 4 +-
reference/make.geosse-1.png | Bin 72230 -> 72260 bytes
reference/make.geosse.html | 4 +-
reference/make.geosse.split.html | 4 +-
reference/make.geosse.t-1.png | Bin 72230 -> 72260 bytes
reference/make.geosse.t.html | 4 +-
reference/make.mkn.html | 4 +-
reference/make.musse.html | 4 +-
reference/make.musse.multitrait.html | 4 +-
reference/make.musse.split.html | 4 +-
reference/make.musse.td-1.png | Bin 48911 -> 48751 bytes
reference/make.musse.td.html | 4 +-
reference/make.pgls.html | 4 +-
reference/make.prior.html | 4 +-
reference/make.quasse.html | 4 +-
reference/make.quasse.split.html | 4 +-
reference/mcmc.html | 4 +-
reference/plot.history.html | 4 +-
reference/profiles.plot.html | 5 +-
reference/protect.html | 4 +-
reference/quasse-common.html | 4 +-
reference/set.defaults.html | 4 +-
reference/sim.character.html | 4 +-
reference/simulate.html | 6 +-
reference/trait.plot-1.png | Bin 216074 -> 218339 bytes
reference/trait.plot-2.png | Bin 174006 -> 174053 bytes
reference/trait.plot-3.png | Bin 249592 -> 251501 bytes
reference/trait.plot-4.png | Bin 33953 -> 33962 bytes
reference/trait.plot.html | 4 +-
reference/utils.html | 4 +-
61 files changed, 114 insertions(+), 203 deletions(-)
diff --git a/404.html b/404.html
index ef5e2e7..b3b62e2 100644
--- a/404.html
+++ b/404.html
@@ -32,7 +32,7 @@
diversitree
- 0.9-23
+ 0.10-0
@@ -78,7 +78,7 @@ Page not found (404)
diff --git a/authors.html b/authors.html
index 934492d..dbb76a3 100644
--- a/authors.html
+++ b/authors.html
@@ -17,7 +17,7 @@
diversitree
- 0.9-23
+ 0.10-0
@@ -86,7 +86,7 @@ Citation
diff --git a/index.html b/index.html
index 5cb45a3..a51e588 100644
--- a/index.html
+++ b/index.html
@@ -33,7 +33,7 @@
diversitree
- 0.9-23
+ 0.10-0
@@ -78,6 +78,11 @@
+
Unresolved clades
+
+
As of version 0.10.0, diversitree can no longer work with unresolved clades (FitzJohn, Maddison and Otto 2009’s method), due to the package being long in retirement from development and difficulties adapting the Fortran code to meet CRAN’s requirements. Users can install an older package from github (e.g., with remotes::install_github("mrc-ide/diversitree@e587755")
to install the last released version that contained this code). This will require a working Fortran compiler. Alternatively, a suitably motivated person could restore the code (reverting changes contained in aaaa
) and patch the code to work with the current version of flang
as used by CRAN.
+
+
Branches
The “master” branch contains the bleeding edge version of diversitree. It may or may not work for you. The “release” branch contains stable releases.
@@ -136,7 +141,7 @@
Dev status
diff --git a/pkgdown.yml b/pkgdown.yml
index b4a986a..9237946 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -1,5 +1,5 @@
pandoc: 3.1.11
-pkgdown: 2.1.0
+pkgdown: 2.1.1
pkgdown_sha: ~
articles: {}
-last_built: 2024-08-02T08:32Z
+last_built: 2024-09-29T17:13Z
diff --git a/reference/argnames.html b/reference/argnames.html
index 995af61..43f7568 100644
--- a/reference/argnames.html
+++ b/reference/argnames.html
@@ -23,7 +23,7 @@
diversitree
- 0.9-23
+ 0.10-0
@@ -121,7 +121,7 @@