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DESCRIPTION
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DESCRIPTION
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Package: diversitree
Version: 0.10-1
Title: Comparative 'Phylogenetic' Analyses of Diversification
Authors@R: c(person("Richard G.", "FitzJohn", role = c("aut", "cre"),
email = "[email protected]"),
person("Emma", "Goldberg", role = "aut"),
person("Karen", "Magnuson-Ford", role = "aut"),
person("Roger", "Sidje", role = "aut"))
Depends: R (>= 2.10), methods, ape
Imports:
deSolve (>= 1.7),
graphics,
grDevices,
stats,
subplex,
Rcpp (>= 0.10.0)
Suggests: numDeriv, minqa, lubridate, expm, caper, geiger
LinkingTo: Rcpp
RcppModules: diversitree
SystemRequirements: fftw3 (>= 3.1.2), gsl (>= 1.15)
Description: Contains a number of comparative 'phylogenetic' methods,
mostly focusing on analysing diversification and character
evolution. Contains implementations of 'BiSSE' (Binary State
'Speciation' and Extinction) and its unresolved tree extensions,
'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE',
'GeoSSE', and 'BiSSE-ness' Other included methods include Markov
models of discrete and continuous trait evolution and constant rate
'speciation' and extinction.
License: GPL (>= 2)
URL: https://www.zoology.ubc.ca/prog/diversitree/