From 59a9eda036f11346b5836414afaf94dac53e30c1 Mon Sep 17 00:00:00 2001 From: smessie Date: Fri, 27 Sep 2024 15:07:08 +0200 Subject: [PATCH 01/10] refactor: Move MongoDB specific code to its dedicated repository class --- eslint.config.mjs | 4 +- package-lock.json | 84 ++++------- src/index.ts | 175 ++++++----------------- src/repositories/MongoDBRepository.ts | 194 ++++++++++++++++++++++++++ src/repositories/Repository.ts | 72 ++++++++++ 5 files changed, 341 insertions(+), 188 deletions(-) create mode 100644 src/repositories/MongoDBRepository.ts create mode 100644 src/repositories/Repository.ts diff --git a/eslint.config.mjs b/eslint.config.mjs index 9699e31..ac03840 100644 --- a/eslint.config.mjs +++ b/eslint.config.mjs @@ -11,7 +11,7 @@ const __dirname = path.dirname(__filename); const compat = new FlatCompat({ baseDirectory: __dirname, recommendedConfig: js.configs.recommended, - allConfig: js.configs.all + allConfig: js.configs.all, }); export default [{ @@ -38,4 +38,4 @@ export default [{ semi: ["error", "always"], "@typescript-eslint/no-unused-vars": "warn", }, -}]; \ No newline at end of file +}]; diff --git a/package-lock.json b/package-lock.json index 4b1c616..cc98e28 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,12 +1,12 @@ { "name": "@rdfc/sds-storage-writer-ts", - "version": "1.0.0-alpha.2", + "version": "1.0.0-alpha.3", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "@rdfc/sds-storage-writer-ts", - "version": "1.0.0-alpha.2", + "version": "1.0.0-alpha.3", "license": "MIT", "dependencies": { "@treecg/types": "^0.4.6", @@ -726,6 +726,7 @@ "version": "0.18.0", "resolved": "https://registry.npmjs.org/@eslint/config-array/-/config-array-0.18.0.tgz", "integrity": "sha512-fTxvnS1sRMu3+JjXwJG0j/i4RT9u4qJ+lqS/yCGap4lH4zZGzQ7tu+xZqQmcMZq5OBZDL4QRxQzRjkWcGt8IVw==", + "dev": true, "license": "Apache-2.0", "dependencies": { "@eslint/object-schema": "^2.1.4", @@ -740,6 +741,7 @@ "version": "1.1.11", "resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-1.1.11.tgz", "integrity": "sha512-iCuPHDFgrHX7H2vEI/5xpz07zSHB00TpugqhmYtVmMO6518mCuRMoOYFldEBl0g187ufozdaHgWKcYFb61qGiA==", + "dev": true, "license": "MIT", "dependencies": { "balanced-match": "^1.0.0", @@ -750,6 +752,7 @@ "version": "3.1.2", "resolved": "https://registry.npmjs.org/minimatch/-/minimatch-3.1.2.tgz", "integrity": "sha512-J7p63hRiAjw1NDEww1W7i37+ByIrOWO5XQQAzZ3VOcL0PNybwpfmV/N05zFAzwQ9USyEcX6t3UO+K5aqBQOIHw==", + "dev": true, "license": "ISC", "dependencies": { "brace-expansion": "^1.1.7" @@ -762,6 +765,7 @@ "version": "3.1.0", "resolved": "https://registry.npmjs.org/@eslint/eslintrc/-/eslintrc-3.1.0.tgz", "integrity": "sha512-4Bfj15dVJdoy3RfZmmo86RK1Fwzn6SstsvK9JS+BaVKqC6QQQQyXekNaC+g+LKNgkQ+2VhGAzm6hO40AhMR3zQ==", + "dev": true, "license": "MIT", "dependencies": { "ajv": "^6.12.4", @@ -785,12 +789,14 @@ "version": "2.0.1", "resolved": "https://registry.npmjs.org/argparse/-/argparse-2.0.1.tgz", "integrity": "sha512-8+9WqebbFzpX9OR+Wa6O29asIogeRMzcGtAINdpMHHyAg10f05aSFVBbcEqGf/PXw1EjAZ+q2/bEBg3DvurK3Q==", + "dev": true, "license": "Python-2.0" }, "node_modules/@eslint/eslintrc/node_modules/brace-expansion": { "version": "1.1.11", "resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-1.1.11.tgz", "integrity": "sha512-iCuPHDFgrHX7H2vEI/5xpz07zSHB00TpugqhmYtVmMO6518mCuRMoOYFldEBl0g187ufozdaHgWKcYFb61qGiA==", + "dev": true, "license": "MIT", "dependencies": { "balanced-match": "^1.0.0", @@ -801,6 +807,7 @@ "version": "14.0.0", "resolved": "https://registry.npmjs.org/globals/-/globals-14.0.0.tgz", "integrity": "sha512-oahGvuMGQlPw/ivIYBjVSrWAfWLBeku5tpPE2fOPLi+WHffIWbuh2tCjhyQhTBPMf5E9jDEH4FOmTYgYwbKwtQ==", + "dev": true, "license": "MIT", "engines": { "node": ">=18" @@ -813,6 +820,7 @@ "version": "4.1.0", "resolved": "https://registry.npmjs.org/js-yaml/-/js-yaml-4.1.0.tgz", "integrity": "sha512-wpxZs9NoxZaJESJGIZTyDEaYpl0FKSA+FB9aJiyemKhMwkxQg63h4T1KJgUGHpTqPDNRcmmYLugrRjJlBtWvRA==", + "dev": true, "license": "MIT", "dependencies": { "argparse": "^2.0.1" @@ -825,6 +833,7 @@ "version": "3.1.2", "resolved": "https://registry.npmjs.org/minimatch/-/minimatch-3.1.2.tgz", "integrity": "sha512-J7p63hRiAjw1NDEww1W7i37+ByIrOWO5XQQAzZ3VOcL0PNybwpfmV/N05zFAzwQ9USyEcX6t3UO+K5aqBQOIHw==", + "dev": true, "license": "ISC", "dependencies": { "brace-expansion": "^1.1.7" @@ -847,6 +856,7 @@ "version": "2.1.4", "resolved": "https://registry.npmjs.org/@eslint/object-schema/-/object-schema-2.1.4.tgz", "integrity": "sha512-BsWiH1yFGjXXS2yvrf5LyuoSIIbPrGUWob917o+BTKuZ7qJdxX8aJLRxs1fS9n6r7vESrq1OUqb68dANcFXuQQ==", + "dev": true, "license": "Apache-2.0", "engines": { "node": "^18.18.0 || ^20.9.0 || >=21.1.0" @@ -912,6 +922,7 @@ "version": "0.3.0", "resolved": "https://registry.npmjs.org/@humanwhocodes/retry/-/retry-0.3.0.tgz", "integrity": "sha512-d2CGZR2o7fS6sWB7DG/3a95bGKQyHMACZ5aW8qGkkqQpUoZV6C0X7Pc7l4ZNMZkfNBf4VWNe9E1jRsf0G146Ew==", + "dev": true, "license": "Apache-2.0", "engines": { "node": ">=18.18" @@ -2578,6 +2589,7 @@ "version": "9.9.1", "resolved": "https://registry.npmjs.org/eslint/-/eslint-9.9.1.tgz", "integrity": "sha512-dHvhrbfr4xFQ9/dq+jcVneZMyRYLjggWjk6RVsIiHsP8Rz6yZ8LvZ//iU4TrZF+SXWG+JkNF2OyiZRvzgRDqMg==", + "dev": true, "license": "MIT", "dependencies": { "@eslint-community/eslint-utils": "^4.2.0", @@ -2648,6 +2660,7 @@ "version": "8.0.2", "resolved": "https://registry.npmjs.org/eslint-scope/-/eslint-scope-8.0.2.tgz", "integrity": "sha512-6E4xmrTw5wtxnLA5wYL3WDfhZ/1bUBGOXV0zQvVRDOtrR8D0p6W7fs3JweNYhwRYeGvd/1CKX2se0/2s7Q/nJA==", + "dev": true, "license": "BSD-2-Clause", "dependencies": { "esrecurse": "^4.3.0", @@ -2675,6 +2688,7 @@ "version": "9.9.1", "resolved": "https://registry.npmjs.org/@eslint/js/-/js-9.9.1.tgz", "integrity": "sha512-xIDQRsfg5hNBqHz04H1R3scSVwmI+KUbqjsQKHKQ1DAUSaUjYPReZZmS/5PNiKu1fUvzDd6H7DEDKACSEhu+TQ==", + "dev": true, "license": "MIT", "engines": { "node": "^18.18.0 || ^20.9.0 || >=21.1.0" @@ -2684,6 +2698,7 @@ "version": "1.1.11", "resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-1.1.11.tgz", "integrity": "sha512-iCuPHDFgrHX7H2vEI/5xpz07zSHB00TpugqhmYtVmMO6518mCuRMoOYFldEBl0g187ufozdaHgWKcYFb61qGiA==", + "dev": true, "dependencies": { "balanced-match": "^1.0.0", "concat-map": "0.0.1" @@ -2693,6 +2708,7 @@ "version": "4.0.0", "resolved": "https://registry.npmjs.org/eslint-visitor-keys/-/eslint-visitor-keys-4.0.0.tgz", "integrity": "sha512-OtIRv/2GyiF6o/d8K7MYKKbXrOUBIK6SfkIRM4Z0dY3w+LiQ0vy3F57m0Z71bjbyeiWFiHJ8brqnmE6H6/jEuw==", + "dev": true, "license": "Apache-2.0", "engines": { "node": "^18.18.0 || ^20.9.0 || >=21.1.0" @@ -2705,6 +2721,7 @@ "version": "5.0.0", "resolved": "https://registry.npmjs.org/find-up/-/find-up-5.0.0.tgz", "integrity": "sha512-78/PXT1wlLLDgTzDs7sjq9hzz0vXD+zn+7wypEe4fXQxCmdmqfGsEPQxmiCSQI3ajFV91bVSsvNtrJRiW6nGng==", + "dev": true, "dependencies": { "locate-path": "^6.0.0", "path-exists": "^4.0.0" @@ -2720,6 +2737,7 @@ "version": "6.0.0", "resolved": "https://registry.npmjs.org/locate-path/-/locate-path-6.0.0.tgz", "integrity": "sha512-iPZK6eYjbxRu3uB4/WZ3EsEIMJFMqAoopl3R+zuq0UjcAm/MO6KCweDgPfP3elTztoKP3KtnVHxTn2NHBSDVUw==", + "dev": true, "dependencies": { "p-locate": "^5.0.0" }, @@ -2734,6 +2752,7 @@ "version": "3.1.2", "resolved": "https://registry.npmjs.org/minimatch/-/minimatch-3.1.2.tgz", "integrity": "sha512-J7p63hRiAjw1NDEww1W7i37+ByIrOWO5XQQAzZ3VOcL0PNybwpfmV/N05zFAzwQ9USyEcX6t3UO+K5aqBQOIHw==", + "dev": true, "dependencies": { "brace-expansion": "^1.1.7" }, @@ -2745,6 +2764,7 @@ "version": "3.1.0", "resolved": "https://registry.npmjs.org/p-limit/-/p-limit-3.1.0.tgz", "integrity": "sha512-TYOanM3wGwNGsZN2cVTYPArw454xnXj5qmWF1bEoAc4+cU/ol7GVh7odevjp1FNHduHc3KZMcFduxU5Xc6uJRQ==", + "dev": true, "dependencies": { "yocto-queue": "^0.1.0" }, @@ -2759,6 +2779,7 @@ "version": "5.0.0", "resolved": "https://registry.npmjs.org/p-locate/-/p-locate-5.0.0.tgz", "integrity": "sha512-LaNjtRWUBY++zB5nE/NwcaoMylSPk+S+ZHNB1TzdbMJMny6dynpAGt7X/tl/QYq3TIeE6nxHppbo2LGymrG5Pw==", + "dev": true, "dependencies": { "p-limit": "^3.0.2" }, @@ -2773,6 +2794,7 @@ "version": "0.1.0", "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz", "integrity": "sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q==", + "dev": true, "engines": { "node": ">=10" }, @@ -2784,6 +2806,7 @@ "version": "10.1.0", "resolved": "https://registry.npmjs.org/espree/-/espree-10.1.0.tgz", "integrity": "sha512-M1M6CpiE6ffoigIOWYO9UDP8TMUw9kqb21tf+08IgDYjCsOvCuDt4jQcZmoYxx+w7zlKw9/N0KXfto+I8/FrXA==", + "dev": true, "license": "BSD-2-Clause", "dependencies": { "acorn": "^8.12.0", @@ -2801,6 +2824,7 @@ "version": "4.0.0", "resolved": "https://registry.npmjs.org/eslint-visitor-keys/-/eslint-visitor-keys-4.0.0.tgz", "integrity": "sha512-OtIRv/2GyiF6o/d8K7MYKKbXrOUBIK6SfkIRM4Z0dY3w+LiQ0vy3F57m0Z71bjbyeiWFiHJ8brqnmE6H6/jEuw==", + "dev": true, "license": "Apache-2.0", "engines": { "node": "^18.18.0 || ^20.9.0 || >=21.1.0" @@ -3006,6 +3030,7 @@ "version": "8.0.0", "resolved": "https://registry.npmjs.org/file-entry-cache/-/file-entry-cache-8.0.0.tgz", "integrity": "sha512-XXTUwCvisa5oacNGRP9SfNtYBNAMi+RPwBFmblZEF7N7swHYQS6/Zfk7SRwx4D5j3CH211YNRco1DEMNVfZCnQ==", + "dev": true, "license": "MIT", "dependencies": { "flat-cache": "^4.0.0" @@ -3073,6 +3098,7 @@ "version": "4.0.1", "resolved": "https://registry.npmjs.org/flat-cache/-/flat-cache-4.0.1.tgz", "integrity": "sha512-f7ccFPK3SXFHpx15UIGyRJ/FJQctuKZ0zVuN3frBo4HnK3cay9VEW0R6yPYFHC0AgqhukPzKjq22t5DmAyqGyw==", + "dev": true, "license": "MIT", "dependencies": { "flatted": "^3.2.9", @@ -3454,27 +3480,6 @@ "dev": true, "license": "ISC" }, - "node_modules/ip-address": { - "version": "9.0.5", - "resolved": "https://registry.npmjs.org/ip-address/-/ip-address-9.0.5.tgz", - "integrity": "sha512-zHtQzGojZXTwZTHQqra+ETKd4Sn3vgi7uBmlPoXVWZqYvuKmtI0l/VZTjqGmJY9x88GGOaZ9+G9ES8hC4T4X8g==", - "optional": true, - "peer": true, - "dependencies": { - "jsbn": "1.1.0", - "sprintf-js": "^1.1.3" - }, - "engines": { - "node": ">= 12" - } - }, - "node_modules/ip-address/node_modules/sprintf-js": { - "version": "1.1.3", - "resolved": "https://registry.npmjs.org/sprintf-js/-/sprintf-js-1.1.3.tgz", - "integrity": "sha512-Oo+0REFV59/rz3gfJNKQiBlwfHaSESl1pcGyABQsnnIfWOFt6JNj5gCog2U6MLZ//IGYD+nA8nI+mTShREReaA==", - "optional": true, - "peer": true - }, "node_modules/is-arrayish": { "version": "0.3.2", "resolved": "https://registry.npmjs.org/is-arrayish/-/is-arrayish-0.3.2.tgz", @@ -3864,13 +3869,6 @@ "js-yaml": "bin/js-yaml.js" } }, - "node_modules/jsbn": { - "version": "1.1.0", - "resolved": "https://registry.npmjs.org/jsbn/-/jsbn-1.1.0.tgz", - "integrity": "sha512-4bYVV3aAMtDTTu4+xsDYa6sy9GyJ69/amsu9sYF2zqjiEoZA5xJi3BrfX3uY+/IekIu7MwdObdbDWpoZdBv3/A==", - "optional": true, - "peer": true - }, "node_modules/jsesc": { "version": "2.5.2", "resolved": "https://registry.npmjs.org/jsesc/-/jsesc-2.5.2.tgz", @@ -5745,32 +5743,6 @@ "url": "https://github.com/chalk/ansi-styles?sponsor=1" } }, - "node_modules/smart-buffer": { - "version": "4.2.0", - "resolved": "https://registry.npmjs.org/smart-buffer/-/smart-buffer-4.2.0.tgz", - "integrity": "sha512-94hK0Hh8rPqQl2xXc3HsaBoOXKV20MToPkcXvwbISWLEs+64sBq5kFgn2kJDHb1Pry9yrP0dxrCI9RRci7RXKg==", - "optional": true, - "peer": true, - "engines": { - "node": ">= 6.0.0", - "npm": ">= 3.0.0" - } - }, - "node_modules/socks": { - "version": "2.8.3", - "resolved": "https://registry.npmjs.org/socks/-/socks-2.8.3.tgz", - "integrity": "sha512-l5x7VUUWbjVFbafGLxPWkYsHIhEvmF85tbIeFZWc8ZPtoMyybuEhL7Jye/ooC4/d48FgOjSJXgsF/AJPYCW8Zw==", - "optional": true, - "peer": true, - "dependencies": { - "ip-address": "^9.0.5", - "smart-buffer": "^4.2.0" - }, - "engines": { - "node": ">= 10.0.0", - "npm": ">= 3.0.0" - } - }, "node_modules/source-map-js": { "version": "1.2.0", "resolved": "https://registry.npmjs.org/source-map-js/-/source-map-js-1.2.0.tgz", diff --git a/src/index.ts b/src/index.ts index 041b2de..11a8e75 100644 --- a/src/index.ts +++ b/src/index.ts @@ -1,22 +1,17 @@ import type * as RDF from "@rdfjs/types"; import { Stream } from "@rdfc/js-runner"; -import { - LDES, - Member, - PROV, - RDF as RDFT, - RelationType, - SDS, -} from "@treecg/types"; -import { AnyBulkWriteOperation, Collection, MongoClient } from "mongodb"; +import { LDES, Member, PROV, RDF as RDFT, SDS } from "@treecg/types"; import { DataFactory, Parser, Quad_Object, Writer } from "n3"; -import { env } from "process"; -import { TREEFragment } from "./fragmentHelper"; import { getLoggerFor } from "./utils/logUtil"; import { Extract, Extractor, RdfThing } from "./extractor"; /* @ts-expect-error no type declaration available */ import canonize from "rdf-canonize"; import { Lock } from "async-await-mutex-lock"; +import { + getRepository, + IndexBulkOperations, + Repository, +} from "./repositories/Repository"; const logger = getLoggerFor("ingest"); @@ -83,60 +78,36 @@ export type DBConfig = { }; const lock = new Lock(); + async function handleRecords( extract: Extract, - collection: Collection, - operations: AnyBulkWriteOperation[], + repository: Repository, + operations: IndexBulkOperations, ) { const dataSer = new Writer().quadsToString(extract.getData()); const records = extract.getRecords(); // only set the data if the id does not exist - const bulkUpdate: AnyBulkWriteOperation[] = records.map( - (rec) => ({ - updateOne: { - filter: { - id: rec.payload, - }, - update: { - $setOnInsert: { - data: dataSer, - }, - }, - upsert: true, - }, - }), - ); + const dataOperations = repository.prepareDataBulk(); - await lock.acquire("memberCollection"); - try { - await collection.bulkWrite(bulkUpdate); - } finally { - lock.release("memberCollection"); + for (const rec of records) { + await repository.handleRecord(rec, dataSer, dataOperations); } + await repository.ingestDataBulk(dataOperations); + // Add this payload as a member to the correct buckets for (const rec of records) { for (const bucket of rec.buckets) { - operations.push({ - updateOne: { - filter: { - streamId: rec.stream, - id: bucket, - }, - update: { - $addToSet: { members: rec.payload }, - }, - upsert: true, - }, - }); + await repository.handleMember(rec, bucket, operations); } } } -function handleBuckets( +async function handleBuckets( extract: Extract, - operations: AnyBulkWriteOperation[], + repository: Repository, + operations: IndexBulkOperations, ) { const buckets = extract.getBuckets(); @@ -160,22 +131,12 @@ function handleBuckets( set.immutable = bucket.immutable; } - operations.push({ - updateOne: { - filter: { - streamId: bucket.stream, - id: bucket.id, - }, - update: { - $set: set, - }, - upsert: true, - }, - }); + await repository.handleBucket(bucket, set, operations); } } const df = DataFactory; + async function pathString(thing?: RdfThing): Promise { if (!thing) { return; @@ -195,7 +156,8 @@ async function pathString(thing?: RdfThing): Promise { async function handleRelations( extract: Extract, - operations: AnyBulkWriteOperation[], + repository: Repository, + operations: IndexBulkOperations, ) { const relations = extract.getRelations(); @@ -203,31 +165,13 @@ async function handleRelations( const pathValue = await pathString(rel.path); const valueValue = await pathString(rel.value); - operations.push({ - updateOne: { - filter: { - streamId: rel.stream, - id: rel.origin, - }, - update: { - $addToSet: { - relations: { - bucket: rel.bucket, - path: pathValue, - type: rel.type, - value: valueValue, - }, - }, - }, - upsert: true, - }, - }); + await repository.handleRelation(rel, pathValue, valueValue, operations); } } async function setup_metadata( metadata: Stream, - metaCollection: Collection, + repository: Repository, setTimestamp: (stream: string, value: string) => void, onClose: () => void, ) { @@ -238,17 +182,8 @@ async function setup_metadata( return onClose(); }); - const dbFragmentations: Member[] = await metaCollection - .find({ - type: "fragmentation", - }) - .map((entry) => { - return { - id: entry.id, - quads: new Parser().parse(entry.value), - }; - }) - .toArray(); + const dbFragmentations: Member[] = + await repository.findMetadataFragmentations(); logger.debug( `[setup_metadata] Found ${dbFragmentations.length} fragmentations (${dbFragmentations.map( @@ -260,7 +195,7 @@ async function setup_metadata( meta = maybe_parse(meta); if (!ingestMetadata) { logger.error( - "[setup_metadata] Cannot handle metadata, mongo is closed", + "[setup_metadata] Cannot handle metadata, repository is closed", ); return; } @@ -300,16 +235,7 @@ async function setup_metadata( const ser = new Writer().quadsToString(streamMember); - await lock.acquire("metaCollection"); - try { - await metaCollection.updateOne( - { type: SDS.Stream, id: streamId.value }, - { $set: { value: ser } }, - { upsert: true }, - ); - } finally { - lock.release("metaCollection"); - } + await repository.ingestMetadata(SDS.Stream, streamId.value, ser); } }; @@ -325,12 +251,8 @@ export async function ingest( metadata: Stream, database: DBConfig, ) { - const url = - database.url || env.DB_CONN_STRING || "mongodb://localhost:27017/ldes"; - const mongo = await new MongoClient(url).connect(); - const db = mongo.db(); - - logger.debug(`Connected to ${url}`); + const repository = getRepository(database); + await repository.open(); const streamTimestampPaths: { [streamId: string]: string } = {}; @@ -338,38 +260,35 @@ export async function ingest( let ingestData = true; let closed = false; - const closeMongo = () => { + const closeRepository = () => { if (!ingestMetadata && !ingestData && !closed) { - logger.info("Closing MongoDB client connection"); + logger.info("Closing repository client connection"); closed = true; - return mongo.close(); + return repository.close(); } }; - data.on("end", () => { + data.on("end", async () => { ingestData = false; - return closeMongo(); + return await closeRepository(); }); await setup_metadata( metadata, - db.collection(database.metadata), + repository, (k, v) => (streamTimestampPaths[k] = v), - closeMongo, + closeRepository, ); logger.debug("Attached metadata handler"); - const memberCollection = db.collection(database.data); - await memberCollection.createIndex({ id: 1 }); - const indexCollection = db.collection(database.index); - await indexCollection.createIndex({ streamId: 1, id: 1 }); + await repository.createIndices(); const extractor = new Extractor(); data.data(async (input: RDF.Quad[] | string) => { const data = maybe_parse(input); if (!ingestData) { - logger.error("Cannot handle data, mongo is closed"); + logger.error("Cannot handle data, repository is closed"); return; } logger.debug( @@ -377,18 +296,14 @@ export async function ingest( ); const extract = extractor.extract_quads(data); - const indexOperations: AnyBulkWriteOperation[] = []; + const indexOperations: IndexBulkOperations = + repository.prepareIndexBulk(); - await handleRecords(extract, memberCollection, indexOperations); - handleBuckets(extract, indexOperations); - await handleRelations(extract, indexOperations); + await handleRecords(extract, repository, indexOperations); + await handleBuckets(extract, repository, indexOperations); + await handleRelations(extract, repository, indexOperations); - await lock.acquire("indexCollection"); - try { - await indexCollection.bulkWrite(indexOperations); - } finally { - lock.release("indexCollection"); - } + await repository.ingestIndexBulk(indexOperations); }); logger.debug("Attached data handler"); diff --git a/src/repositories/MongoDBRepository.ts b/src/repositories/MongoDBRepository.ts new file mode 100644 index 0000000..ef5f0d8 --- /dev/null +++ b/src/repositories/MongoDBRepository.ts @@ -0,0 +1,194 @@ +import { Repository } from "./Repository"; +import { AnyBulkWriteOperation, Db, MongoClient } from "mongodb"; +import { getLoggerFor } from "../utils/logUtil"; +import { Lock } from "async-await-mutex-lock"; +import { Member } from "@treecg/types"; +import { Parser } from "n3"; +import { TREEFragment } from "../fragmentHelper"; +import { DataRecord } from "../index"; +import { Bucket, Record, Relation } from "../extractor"; + +export class MongoDBRepository implements Repository { + protected url: string; + protected metadata: string; + protected data: string; + protected index: string; + + protected client: MongoClient; + protected db: Db; + + protected logger = getLoggerFor(this); + protected lock = new Lock(); + + constructor(url: string, metadata: string, data: string, index: string) { + this.url = url; + this.metadata = metadata; + this.data = data; + this.index = index; + } + + async open(): Promise { + this.client = await new MongoClient(this.url).connect(); + this.db = this.client.db(); + + this.logger.debug(`Connected to ${this.url}`); + } + + async close(): Promise { + await this.client.close(); + + this.logger.debug(`Closed connection to ${this.url}`); + } + + async ingestMetadata( + type: string, + id: string, + value: string, + ): Promise { + await this.lock.acquire("metaMongoDB"); + try { + await this.db + .collection(this.metadata) + .updateOne({ type, id }, { $set: { value } }, { upsert: true }); + } finally { + this.lock.release("metaMongoDB"); + } + } + + async findMetadataFragmentations(): Promise { + return await this.db + .collection(this.metadata) + .find({ + type: "fragmentation", + }) + .map((entry) => { + return { + id: entry.id, + quads: new Parser().parse(entry.value), + }; + }) + .toArray(); + } + + async createIndices(): Promise { + await this.db.collection(this.data).createIndex({ id: 1 }); + await this.db + .collection(this.index) + .createIndex({ streamId: 1, id: 1 }); + } + + prepareDataBulk(): AnyBulkWriteOperation[] { + return []; + } + + async ingestDataBulk( + bulk: AnyBulkWriteOperation[], + ): Promise { + await this.lock.acquire("dataMongoDB"); + try { + await this.db.collection(this.data).bulkWrite(bulk); + } finally { + this.lock.release("dataMongoDB"); + } + } + + async handleRecord( + record: Record, + data: string, + bulk: AnyBulkWriteOperation[], + ): Promise { + bulk.push({ + updateOne: { + filter: { + id: record.payload, + }, + update: { + $setOnInsert: { + data: data, + }, + }, + upsert: true, + }, + }); + } + + prepareIndexBulk(): AnyBulkWriteOperation[] { + return []; + } + + async ingestIndexBulk( + bulk: AnyBulkWriteOperation[], + ): Promise { + await this.lock.acquire("indexMongoDB"); + try { + await this.db.collection(this.index).bulkWrite(bulk); + } finally { + this.lock.release("indexMongoDB"); + } + } + + async handleMember( + record: Record, + bucket: string, + bulk: AnyBulkWriteOperation[], + ): Promise { + bulk.push({ + updateOne: { + filter: { + streamId: record.stream, + id: bucket, + }, + update: { + $addToSet: { members: record.payload }, + }, + upsert: true, + }, + }); + } + + async handleBucket( + bucket: Bucket, + parameters: any, + bulk: AnyBulkWriteOperation[], + ): Promise { + bulk.push({ + updateOne: { + filter: { + streamId: bucket.stream, + id: bucket.id, + }, + update: { + $set: parameters, + }, + upsert: true, + }, + }); + } + + async handleRelation( + relation: Relation, + path: string | undefined, + value: string | undefined, + bulk: AnyBulkWriteOperation[], + ): Promise { + bulk.push({ + updateOne: { + filter: { + streamId: relation.stream, + id: relation.origin, + }, + update: { + $addToSet: { + relations: { + bucket: relation.bucket, + path: path, + type: relation.type, + value: value, + }, + }, + }, + upsert: true, + }, + }); + } +} diff --git a/src/repositories/Repository.ts b/src/repositories/Repository.ts new file mode 100644 index 0000000..9a9b9c8 --- /dev/null +++ b/src/repositories/Repository.ts @@ -0,0 +1,72 @@ +import { DataRecord, DBConfig } from "../index"; +import { env } from "process"; +import { MongoDBRepository } from "./MongoDBRepository"; +import { Member } from "@treecg/types"; +import { AnyBulkWriteOperation } from "mongodb"; +import { TREEFragment } from "../fragmentHelper"; +import { Bucket, Record, Relation } from "../extractor"; + +export type DataBulkOperations = AnyBulkWriteOperation[]; + +export type IndexBulkOperations = AnyBulkWriteOperation[]; + +export interface Repository { + open(): Promise; + + close(): Promise; + + ingestMetadata(type: string, id: string, value: string): Promise; + + findMetadataFragmentations(): Promise; + + createIndices(): Promise; + + prepareDataBulk(): DataBulkOperations; + + ingestDataBulk(bulk: DataBulkOperations): Promise; + + handleRecord( + record: Record, + data: string, + bulk: DataBulkOperations, + ): Promise; + + prepareIndexBulk(): IndexBulkOperations; + + ingestIndexBulk(bulk: IndexBulkOperations): Promise; + + handleMember( + record: Record, + bucket: string, + bulk: IndexBulkOperations, + ): Promise; + + handleBucket( + bucket: Bucket, + parameters: any, + bulk: IndexBulkOperations, + ): Promise; + + handleRelation( + relation: Relation, + path: string | undefined, + value: string | undefined, + bulk: IndexBulkOperations, + ): Promise; +} + +export function getRepository(dbConfig: DBConfig): Repository { + const url = + dbConfig.url || env.DB_CONN_STRING || "mongodb://localhost:27017/ldes"; + + if (url.startsWith("mongodb://")) { + return new MongoDBRepository( + url, + dbConfig.metadata, + dbConfig.data, + dbConfig.index, + ); + } else { + throw new Error("Unknown database type"); + } +} From 6a8b675e4453f779177f6df6d00ac9b7bcd669db Mon Sep 17 00:00:00 2001 From: smessie Date: Wed, 2 Oct 2024 16:06:04 +0200 Subject: [PATCH 02/10] feat: Add Redis support --- package-lock.json | 88 ++++++++++++++ package.json | 4 +- src/repositories/RedisRepository.ts | 172 ++++++++++++++++++++++++++++ src/repositories/Repository.ts | 16 ++- 4 files changed, 277 insertions(+), 3 deletions(-) create mode 100644 src/repositories/RedisRepository.ts diff --git a/package-lock.json b/package-lock.json index cc98e28..657cf6f 100644 --- a/package-lock.json +++ b/package-lock.json @@ -15,6 +15,7 @@ "n3": "^1.21.0", "rdf-canonize": "^4.0.1", "rdf-lens": "^1.3.0", + "redis": "^4.7.0", "winston": "^3.14.2" }, "devDependencies": { @@ -1195,6 +1196,64 @@ "@types/node": "*" } }, + "node_modules/@redis/bloom": { + "version": "1.2.0", + "resolved": "https://registry.npmjs.org/@redis/bloom/-/bloom-1.2.0.tgz", + "integrity": "sha512-HG2DFjYKbpNmVXsa0keLHp/3leGJz1mjh09f2RLGGLQZzSHpkmZWuwJbAvo3QcRY8p80m5+ZdXZdYOSBLlp7Cg==", + "peerDependencies": { + "@redis/client": "^1.0.0" + } + }, + "node_modules/@redis/client": { + "version": "1.6.0", + "resolved": "https://registry.npmjs.org/@redis/client/-/client-1.6.0.tgz", + "integrity": "sha512-aR0uffYI700OEEH4gYnitAnv3vzVGXCFvYfdpu/CJKvk4pHfLPEy/JSZyrpQ+15WhXe1yJRXLtfQ84s4mEXnPg==", + "dependencies": { + "cluster-key-slot": "1.1.2", + "generic-pool": "3.9.0", + "yallist": "4.0.0" + }, + "engines": { + "node": ">=14" + } + }, + "node_modules/@redis/client/node_modules/yallist": { + "version": "4.0.0", + "resolved": "https://registry.npmjs.org/yallist/-/yallist-4.0.0.tgz", + "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A==" + }, + "node_modules/@redis/graph": { + "version": "1.1.1", + "resolved": "https://registry.npmjs.org/@redis/graph/-/graph-1.1.1.tgz", + "integrity": "sha512-FEMTcTHZozZciLRl6GiiIB4zGm5z5F3F6a6FZCyrfxdKOhFlGkiAqlexWMBzCi4DcRoyiOsuLfW+cjlGWyExOw==", + "peerDependencies": { + "@redis/client": "^1.0.0" + } + }, + "node_modules/@redis/json": { + "version": "1.0.7", + "resolved": "https://registry.npmjs.org/@redis/json/-/json-1.0.7.tgz", + "integrity": "sha512-6UyXfjVaTBTJtKNG4/9Z8PSpKE6XgSyEb8iwaqDcy+uKrd/DGYHTWkUdnQDyzm727V7p21WUMhsqz5oy65kPcQ==", + "peerDependencies": { + "@redis/client": "^1.0.0" + } + }, + "node_modules/@redis/search": { + "version": "1.2.0", + "resolved": "https://registry.npmjs.org/@redis/search/-/search-1.2.0.tgz", + "integrity": "sha512-tYoDBbtqOVigEDMAcTGsRlMycIIjwMCgD8eR2t0NANeQmgK/lvxNAvYyb6bZDD4frHRhIHkJu2TBRvB0ERkOmw==", + "peerDependencies": { + "@redis/client": "^1.0.0" + } + }, + "node_modules/@redis/time-series": { + "version": "1.1.0", + "resolved": "https://registry.npmjs.org/@redis/time-series/-/time-series-1.1.0.tgz", + "integrity": "sha512-c1Q99M5ljsIuc4YdaCwfUEXsofakb9c8+Zse2qxTadu8TalLXuAESzLvFAvNVbkmSlvlzIQOLpBCmWI9wTOt+g==", + "peerDependencies": { + "@redis/client": "^1.0.0" + } + }, "node_modules/@rollup/rollup-linux-x64-gnu": { "version": "4.21.1", "resolved": "https://registry.npmjs.org/@rollup/rollup-linux-x64-gnu/-/rollup-linux-x64-gnu-4.21.1.tgz", @@ -2266,6 +2325,14 @@ "url": "https://github.com/sponsors/sindresorhus" } }, + "node_modules/cluster-key-slot": { + "version": "1.1.2", + "resolved": "https://registry.npmjs.org/cluster-key-slot/-/cluster-key-slot-1.1.2.tgz", + "integrity": "sha512-RMr0FhtfXemyinomL4hrWcYJxmX6deFdCxpJzhDttxgO1+bcCnkk+9drydLVDmAMG7NE6aN/fl4F7ucU/90gAA==", + "engines": { + "node": ">=0.10.0" + } + }, "node_modules/color": { "version": "3.2.1", "resolved": "https://registry.npmjs.org/color/-/color-3.2.1.tgz", @@ -3155,6 +3222,14 @@ "url": "https://github.com/sponsors/ljharb" } }, + "node_modules/generic-pool": { + "version": "3.9.0", + "resolved": "https://registry.npmjs.org/generic-pool/-/generic-pool-3.9.0.tgz", + "integrity": "sha512-hymDOu5B53XvN4QT9dBmZxPX4CWhBPPLguTZ9MMFeFa/Kg0xWVfylOVNlJji/E7yTZWFd/q9GO5TxDLq156D7g==", + "engines": { + "node": ">= 4" + } + }, "node_modules/gensync": { "version": "1.0.0-beta.2", "resolved": "https://registry.npmjs.org/gensync/-/gensync-1.0.0-beta.2.tgz", @@ -5472,6 +5547,19 @@ "node": ">=8.10.0" } }, + "node_modules/redis": { + "version": "4.7.0", + "resolved": "https://registry.npmjs.org/redis/-/redis-4.7.0.tgz", + "integrity": "sha512-zvmkHEAdGMn+hMRXuMBtu4Vo5P6rHQjLoHftu+lBqq8ZTA3RCVC/WzD790bkKKiNFp7d5/9PcSD19fJyyRvOdQ==", + "dependencies": { + "@redis/bloom": "1.2.0", + "@redis/client": "1.6.0", + "@redis/graph": "1.1.1", + "@redis/json": "1.0.7", + "@redis/search": "1.2.0", + "@redis/time-series": "1.1.0" + } + }, "node_modules/resolve": { "version": "1.22.8", "resolved": "https://registry.npmjs.org/resolve/-/resolve-1.22.8.tgz", diff --git a/package.json b/package.json index 0d34884..24c1c03 100644 --- a/package.json +++ b/package.json @@ -23,7 +23,8 @@ "author": "Arthur Vercruysse", "contributors": [ "Julián Rojas", - "Pieter Colpaert" + "Pieter Colpaert", + "Ieben Smessaert" ], "license": "MIT", "devDependencies": { @@ -54,6 +55,7 @@ "n3": "^1.21.0", "rdf-canonize": "^4.0.1", "rdf-lens": "^1.3.0", + "redis": "^4.7.0", "winston": "^3.14.2" } } diff --git a/src/repositories/RedisRepository.ts b/src/repositories/RedisRepository.ts new file mode 100644 index 0000000..bbbdfba --- /dev/null +++ b/src/repositories/RedisRepository.ts @@ -0,0 +1,172 @@ +import { Repository } from "./Repository"; +import { getLoggerFor } from "../utils/logUtil"; +import { Lock } from "async-await-mutex-lock"; +import { createClient, RedisClientType } from "redis"; +import { Member } from "@treecg/types"; +import { DataFactory, Parser } from "n3"; +import { Bucket, Record, Relation } from "../extractor"; +import namedNode = DataFactory.namedNode; + +export class RedisRepository implements Repository { + protected url: string; + protected metadata: string; + protected data: string; + protected index: string; + + protected client: RedisClientType; + + protected logger = getLoggerFor(this); + protected lock = new Lock(); + + constructor(url: string, metadata: string, data: string, index: string) { + this.url = url; + this.metadata = metadata; + this.data = data; + this.index = index; + } + + async open(): Promise { + this.client = createClient({ url: this.url }); + await this.client.connect(); + + this.logger.debug(`Connected to ${this.url}`); + } + + async close(): Promise { + await this.client.disconnect(); + + this.logger.debug(`Closed connection to ${this.url}`); + } + + async ingestMetadata( + type: string, + id: string, + value: string, + ): Promise { + await this.lock.acquire("metaRedis"); + try { + await this.client.set( + `${this.metadata}:${encodeURIComponent(type)}:${encodeURIComponent(id)}`, + value, + ); + } finally { + this.lock.release("metaRedis"); + } + } + + async findMetadataFragmentations(): Promise { + const keys = await this.client.keys(`${this.metadata}:fragmentation:*`); + if (keys.length === 0) { + return []; + } + const entries = await this.client.mGet(keys); + + return entries.map((entry, i) => { + const key = keys[i].split(":"); + return { + id: namedNode(encodeURIComponent(key[2])), + quads: new Parser().parse(entry!), + }; + }); + } + + async createIndices(): Promise { + // Empty + } + + prepareDataBulk(): Promise[] { + return []; + } + + async ingestDataBulk(bulk: Promise[]): Promise { + await Promise.all(bulk); + } + + async handleRecord( + record: Record, + data: string, + bulk: Promise[], + ): Promise { + bulk.push( + this.client.set( + `${this.data}:${encodeURIComponent(record.payload)}`, + data, + ), + ); + } + + prepareIndexBulk(): Promise[] { + return []; + } + + async ingestIndexBulk( + bulk: Promise[], + ): Promise { + await Promise.all(bulk); + } + + async handleMember( + record: Record, + bucket: string, + bulk: Promise[], + ): Promise { + bulk.push( + this.client.sAdd( + `${this.index}:${encodeURIComponent(record.stream)}:${encodeURIComponent(bucket)}:members`, + record.payload, + ), + ); + } + + async handleBucket( + bucket: Bucket, + parameters: any, + bulk: Promise[], + ): Promise { + // If parameters contains `members`, use the handleMember method and remove the key. + if (parameters.members || parameters.empty) { + bulk.push( + this.client.del( + `${this.index}:${encodeURIComponent(bucket.stream)}:${encodeURIComponent(bucket.id)}:members`, + ), + ); + for (const member of parameters.members) { + await this.handleMember(member, bucket.id, bulk); + } + delete parameters.members; + } + + // Set streamId and id parameters + parameters.streamId = bucket.stream; + parameters.id = bucket.id; + + bulk.push( + this.client.json.set( + `${this.index}:${encodeURIComponent(bucket.stream)}:${encodeURIComponent(bucket.id)}`, + ".", + parameters, + ), + ); + } + + async handleRelation( + relation: Relation, + path: string | undefined, + value: string | undefined, + bulk: Promise[], + ): Promise { + bulk.push( + this.client.sAdd( + `${this.index}:${encodeURIComponent(relation.stream)}:${encodeURIComponent(relation.origin)}:relations`, + JSON.stringify({ + type: relation.type, + stream: relation.stream, + origin: relation.origin, + bucket: relation.bucket, + path: path, + value: value, + }), + ), + ); + } +} diff --git a/src/repositories/Repository.ts b/src/repositories/Repository.ts index 9a9b9c8..3271469 100644 --- a/src/repositories/Repository.ts +++ b/src/repositories/Repository.ts @@ -5,10 +5,15 @@ import { Member } from "@treecg/types"; import { AnyBulkWriteOperation } from "mongodb"; import { TREEFragment } from "../fragmentHelper"; import { Bucket, Record, Relation } from "../extractor"; +import { RedisRepository } from "./RedisRepository"; -export type DataBulkOperations = AnyBulkWriteOperation[]; +export type DataBulkOperations = + | AnyBulkWriteOperation[] + | Promise[]; -export type IndexBulkOperations = AnyBulkWriteOperation[]; +export type IndexBulkOperations = + | AnyBulkWriteOperation[] + | Promise[]; export interface Repository { open(): Promise; @@ -66,6 +71,13 @@ export function getRepository(dbConfig: DBConfig): Repository { dbConfig.data, dbConfig.index, ); + } else if (url.startsWith("redis://")) { + return new RedisRepository( + url, + dbConfig.metadata, + dbConfig.data, + dbConfig.index, + ); } else { throw new Error("Unknown database type"); } From e207a6a7a1ffe53910277cd15f53ea24af5d012c Mon Sep 17 00:00:00 2001 From: smessie Date: Wed, 2 Oct 2024 16:16:47 +0200 Subject: [PATCH 03/10] 1.0.0-alpha.4 --- package-lock.json | 4 ++-- package.json | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/package-lock.json b/package-lock.json index 657cf6f..941ab02 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,12 +1,12 @@ { "name": "@rdfc/sds-storage-writer-ts", - "version": "1.0.0-alpha.3", + "version": "1.0.0-alpha.4", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "@rdfc/sds-storage-writer-ts", - "version": "1.0.0-alpha.3", + "version": "1.0.0-alpha.4", "license": "MIT", "dependencies": { "@treecg/types": "^0.4.6", diff --git a/package.json b/package.json index 24c1c03..617c87d 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "@rdfc/sds-storage-writer-ts", - "version": "1.0.0-alpha.3", + "version": "1.0.0-alpha.4", "description": "An RDF-Connect processor to write SDS streams into a given storage system", "type": "module", "main": "lib/index.js", From df4a8bd418638c82ca1471b3362f10bfe6a6bd61 Mon Sep 17 00:00:00 2001 From: smessie Date: Wed, 2 Oct 2024 16:29:47 +0200 Subject: [PATCH 04/10] ci: Run with Node instead of Bun --- .github/workflows/build-test.yml | 17 +++++++++-------- 1 file changed, 9 insertions(+), 8 deletions(-) diff --git a/.github/workflows/build-test.yml b/.github/workflows/build-test.yml index c1baa3b..f22ff52 100644 --- a/.github/workflows/build-test.yml +++ b/.github/workflows/build-test.yml @@ -1,4 +1,4 @@ -name: Build & Test with Bun +name: Build & Test with Node.js on: push: @@ -10,14 +10,15 @@ jobs: build-and-test: runs-on: ubuntu-latest steps: - - name: Checkout + - name: Checkout uses: actions/checkout@v3 # Checkout repo - - name: Setup Bun - uses: oven-sh/setup-bun@v1 # Setup bun + - name: Setup Node.js + uses: actions/setup-node@v3 # Setup node with: - bun-version: latest + node-version: 20.x + cache: 'npm' - - run: bun i # Install dependencies - - run: bun run build # Build sources - - run: bun test # Run tests \ No newline at end of file + - run: npm ci # Install dependencies + - run: npm run build # Build sources + - run: npm run test # Run tests From df93b49065cacf5185ae9b99c826ad71871b9ff7 Mon Sep 17 00:00:00 2001 From: smessie Date: Wed, 2 Oct 2024 16:37:19 +0200 Subject: [PATCH 05/10] test: Migrate from jest to vitest --- package-lock.json | 2873 ++++++++++++++++++---------------------- package.json | 7 +- test/extractor.test.ts | 2 +- test/processor.test.ts | 2 +- 4 files changed, 1316 insertions(+), 1568 deletions(-) diff --git a/package-lock.json b/package-lock.json index 941ab02..dc1d32d 100644 --- a/package-lock.json +++ b/package-lock.json @@ -22,12 +22,12 @@ "@ajuvercr/ts-transformer-inline-file": "^0.2.0", "@eslint/eslintrc": "^3.1.0", "@eslint/js": "^9.10.0", - "@jest/globals": "^29.7.0", 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"sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A==", + "dev": true + }, + "node_modules/wrap-ansi-cjs/node_modules/is-fullwidth-code-point": { + "version": "3.0.0", + "resolved": "https://registry.npmjs.org/is-fullwidth-code-point/-/is-fullwidth-code-point-3.0.0.tgz", + "integrity": "sha512-zymm5+u+sCsSWyD9qNaejV3DFvhCKclKdizYaJUuHA83RLjb7nSuGnddCHGv0hk+KY7BMAlsWeK4Ueg6EV6XQg==", + "dev": true, + "engines": { + "node": ">=8" + } + }, + "node_modules/wrap-ansi-cjs/node_modules/string-width": { + "version": "4.2.3", + "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz", + "integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==", + "dev": true, + "dependencies": { + "emoji-regex": "^8.0.0", + "is-fullwidth-code-point": "^3.0.0", + "strip-ansi": "^6.0.1" + }, + "engines": { + "node": ">=8" + } + }, "node_modules/wrap-ansi/node_modules/ansi-regex": { "version": "6.0.1", "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-6.0.1.tgz", @@ -6829,25 +6613,6 @@ "resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz", "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==" }, - "node_modules/write-file-atomic": { - "version": "4.0.2", - "resolved": "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-4.0.2.tgz", - "integrity": "sha512-7KxauUdBmSdWnmpaGFg+ppNjKF8uNLry8LyzjauQDOVONfFLNKrKvQOxZ/VuTIcS/gge/YNahf5RIIQWTSarlg==", - "dev": true, - "dependencies": { - "imurmurhash": "^0.1.4", - "signal-exit": "^3.0.7" - }, - "engines": { - "node": "^12.13.0 || ^14.15.0 || >=16.0.0" - } - }, - "node_modules/write-file-atomic/node_modules/signal-exit": { - "version": "3.0.7", - "resolved": "https://registry.npmjs.org/signal-exit/-/signal-exit-3.0.7.tgz", - "integrity": "sha512-wnD2ZE+l+SPC/uoS0vXeE9L1+0wuaMqKlfz9AMUo38JsyLSBWSFcHR1Rri62LZc12vLr1gb3jl7iwQhgwpAbGQ==", - "dev": true - }, "node_modules/ws": { "version": "8.18.0", "resolved": "https://registry.npmjs.org/ws/-/ws-8.18.0.tgz", @@ -6869,12 +6634,6 @@ } } }, - "node_modules/yallist": { - "version": "3.1.1", - "resolved": "https://registry.npmjs.org/yallist/-/yallist-3.1.1.tgz", - "integrity": "sha512-a4UGQaWPH59mOXUYnAG2ewncQS4i4F43Tv3JoAM+s2VDAmS9NsK8GpDMLrCHPksFT7h3K6TOoUNn2pb7RoXx4g==", - "dev": true - }, "node_modules/yaml": { "version": "2.5.0", "resolved": "https://registry.npmjs.org/yaml/-/yaml-2.5.0.tgz", @@ -6909,18 +6668,6 @@ "engines": { "node": ">=6" } - }, - "node_modules/yocto-queue": { - "version": "1.1.1", - "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-1.1.1.tgz", - "integrity": "sha512-b4JR1PFR10y1mKjhHY9LaGo6tmrgjit7hxVIeAmyMw3jegXR4dhYqLaQF5zMXZxY7tLpMyJeLjr1C4rLmkVe8g==", - "license": "MIT", - "engines": { - "node": ">=12.20" - }, - "funding": { - "url": "https://github.com/sponsors/sindresorhus" - } } } } diff --git a/package.json b/package.json index 617c87d..4f29bc4 100644 --- a/package.json +++ b/package.json @@ -6,7 +6,7 @@ "main": "lib/index.js", "scripts": { "build": "tspc && tsc-alias", - "test": "bun test --timeout 30000", + "test": "vitest run --coverage --coverage.include src", "prepublishOnly": "tsc" }, "files": [ @@ -31,12 +31,12 @@ "@ajuvercr/ts-transformer-inline-file": "^0.2.0", "@eslint/eslintrc": "^3.1.0", "@eslint/js": "^9.10.0", - "@jest/globals": "^29.7.0", "@rdfc/js-runner": "^1.0.0-alpha.0", "@types/n3": "^1.16.5", "@types/node": "^22.5.1", "@typescript-eslint/eslint-plugin": "^8.3.0", "@typescript-eslint/parser": "^8.3.0", + "@vitest/coverage-v8": "^2.1.1", "eslint": "^9.9.1", "eslint-config-prettier": "^9.1.0", "globals": "^15.9.0", @@ -46,7 +46,8 @@ "prettier": "^3.3.3", "ts-alias": "^0.0.7", "ts-patch": "^3.2.1", - "typescript": "^5.5.4" + "typescript": "^5.5.4", + "vitest": "^2.1.1" }, "dependencies": { "@treecg/types": "^0.4.6", diff --git a/test/extractor.test.ts b/test/extractor.test.ts index a80839a..0b52fed 100644 --- a/test/extractor.test.ts +++ b/test/extractor.test.ts @@ -1,4 +1,4 @@ -import { describe, expect, test } from "@jest/globals"; +import { describe, expect, test } from "vitest"; import { Extractor } from "../lib/extractor"; describe("SDS storage writer tests", () => { diff --git a/test/processor.test.ts b/test/processor.test.ts index 79236cd..4eebe3c 100644 --- a/test/processor.test.ts +++ b/test/processor.test.ts @@ -1,4 +1,4 @@ -import { describe, expect, test } from "@jest/globals"; +import { describe, expect, test } from "vitest"; import { extractProcessors, extractSteps, Source } from "@rdfc/js-runner"; const prefixes = ` @prefix js: . From ea12381e32569f8b6dd8bf7b8da956c1b8c34769 Mon Sep 17 00:00:00 2001 From: smessie Date: Fri, 4 Oct 2024 15:27:53 +0200 Subject: [PATCH 06/10] fix: First ingest relations before possibly marking bucket as immutable --- src/index.ts | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/index.ts b/src/index.ts index 11a8e75..93fe573 100644 --- a/src/index.ts +++ b/src/index.ts @@ -300,8 +300,8 @@ export async function ingest( repository.prepareIndexBulk(); await handleRecords(extract, repository, indexOperations); - await handleBuckets(extract, repository, indexOperations); await handleRelations(extract, repository, indexOperations); + await handleBuckets(extract, repository, indexOperations); await repository.ingestIndexBulk(indexOperations); }); From c63bc5a289bcd8df03cb2ca63db5c45282aa9320 Mon Sep 17 00:00:00 2001 From: smessie Date: Fri, 4 Oct 2024 15:38:37 +0200 Subject: [PATCH 07/10] 1.0.0-alpha.5 --- package-lock.json | 4 ++-- package.json | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/package-lock.json b/package-lock.json index dc1d32d..e17d270 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,12 +1,12 @@ { "name": "@rdfc/sds-storage-writer-ts", - "version": "1.0.0-alpha.4", + "version": "1.0.0-alpha.5", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "@rdfc/sds-storage-writer-ts", - "version": "1.0.0-alpha.4", + "version": "1.0.0-alpha.5", "license": "MIT", "dependencies": { "@treecg/types": "^0.4.6", diff --git a/package.json b/package.json index 4f29bc4..ecc76c2 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "@rdfc/sds-storage-writer-ts", - "version": "1.0.0-alpha.4", + "version": "1.0.0-alpha.5", "description": "An RDF-Connect processor to write SDS streams into a given storage system", "type": "module", "main": "lib/index.js", From 8b48fb8eec6a51b4d0acea878393b4358308486c Mon Sep 17 00:00:00 2001 From: smessie Date: Tue, 8 Oct 2024 14:49:53 +0200 Subject: [PATCH 08/10] fix: Only handle record if it carries data --- src/extractor.ts | 1 + src/index.ts | 4 +++- src/shape.ttl | 6 ++++++ 3 files changed, 10 insertions(+), 1 deletion(-) diff --git a/src/extractor.ts b/src/extractor.ts index 0d2f813..a38794b 100644 --- a/src/extractor.ts +++ b/src/extractor.ts @@ -11,6 +11,7 @@ export type Record = { stream: string; payload: string; buckets: string[]; + dataless?: boolean; }; export type Bucket = { diff --git a/src/index.ts b/src/index.ts index 93fe573..4068042 100644 --- a/src/index.ts +++ b/src/index.ts @@ -91,7 +91,9 @@ async function handleRecords( const dataOperations = repository.prepareDataBulk(); for (const rec of records) { - await repository.handleRecord(rec, dataSer, dataOperations); + if (!rec.dataless) { + await repository.handleRecord(rec, dataSer, dataOperations); + } } await repository.ingestDataBulk(dataOperations); diff --git a/src/shape.ttl b/src/shape.ttl index 473fd7c..d68f0f7 100644 --- a/src/shape.ttl +++ b/src/shape.ttl @@ -24,6 +24,12 @@ sh:name "buckets"; sh:path sds:bucket; sh:datatype xsd:string; + ], [ + sh:name "dataless"; + sh:path sds:dataless; + sh:datatype xsd:boolean; + sh:minCount 0; + sh:maxCount 1; ]. [ ] a sh:NodeShape; From c0abf12339513b3e07778d191b89f24a3ac2a886 Mon Sep 17 00:00:00 2001 From: smessie Date: Tue, 8 Oct 2024 14:51:11 +0200 Subject: [PATCH 09/10] 1.0.0-alpha.6 --- package-lock.json | 4 ++-- package.json | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/package-lock.json b/package-lock.json index e17d270..12ab19a 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,12 +1,12 @@ { "name": "@rdfc/sds-storage-writer-ts", - "version": "1.0.0-alpha.5", + "version": "1.0.0-alpha.6", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "@rdfc/sds-storage-writer-ts", - "version": "1.0.0-alpha.5", + "version": "1.0.0-alpha.6", "license": "MIT", "dependencies": { "@treecg/types": "^0.4.6", diff --git a/package.json b/package.json index ecc76c2..4b85ad2 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "@rdfc/sds-storage-writer-ts", - "version": "1.0.0-alpha.5", + "version": "1.0.0-alpha.6", "description": "An RDF-Connect processor to write SDS streams into a given storage system", "type": "module", "main": "lib/index.js", From e5d6bb0fc94d92546da4e47c70fd5da4423334b4 Mon Sep 17 00:00:00 2001 From: smessie Date: Mon, 14 Oct 2024 13:05:26 +0200 Subject: [PATCH 10/10] refactor: Simplify bucket handling --- src/extractor.ts | 2 +- src/index.ts | 21 +-------------------- src/repositories/MongoDBRepository.ts | 9 ++++++--- src/repositories/RedisRepository.ts | 19 +++++-------------- src/repositories/Repository.ts | 5 ++--- src/shape.ttl | 2 +- test/extractor.test.ts | 2 +- 7 files changed, 17 insertions(+), 43 deletions(-) diff --git a/src/extractor.ts b/src/extractor.ts index a38794b..703de80 100644 --- a/src/extractor.ts +++ b/src/extractor.ts @@ -16,7 +16,7 @@ export type Record = { export type Bucket = { id: string; - stream: string; + streamId: string; immutable?: boolean; root?: boolean; empty?: boolean; diff --git a/src/index.ts b/src/index.ts index 4068042..625520f 100644 --- a/src/index.ts +++ b/src/index.ts @@ -114,26 +114,7 @@ async function handleBuckets( const buckets = extract.getBuckets(); for (const bucket of buckets) { - const set: { - immutable?: boolean; - root?: boolean; - empty?: boolean; - members?: string[]; - } = {}; - if (bucket.root !== undefined) { - set.root = bucket.root; - } - - if (bucket.empty !== undefined) { - set.empty = bucket.empty; - set.members = []; - } - - if (bucket.immutable !== undefined) { - set.immutable = bucket.immutable; - } - - await repository.handleBucket(bucket, set, operations); + await repository.handleBucket(bucket, operations); } } diff --git a/src/repositories/MongoDBRepository.ts b/src/repositories/MongoDBRepository.ts index ef5f0d8..5058861 100644 --- a/src/repositories/MongoDBRepository.ts +++ b/src/repositories/MongoDBRepository.ts @@ -148,17 +148,20 @@ export class MongoDBRepository implements Repository { async handleBucket( bucket: Bucket, - parameters: any, bulk: AnyBulkWriteOperation[], ): Promise { + if (bucket.empty) { + (bucket as TREEFragment).members = []; + delete bucket.empty; + } bulk.push({ updateOne: { filter: { - streamId: bucket.stream, + streamId: bucket.streamId, id: bucket.id, }, update: { - $set: parameters, + $set: bucket, }, upsert: true, }, diff --git a/src/repositories/RedisRepository.ts b/src/repositories/RedisRepository.ts index bbbdfba..30845d8 100644 --- a/src/repositories/RedisRepository.ts +++ b/src/repositories/RedisRepository.ts @@ -120,31 +120,22 @@ export class RedisRepository implements Repository { async handleBucket( bucket: Bucket, - parameters: any, bulk: Promise[], ): Promise { - // If parameters contains `members`, use the handleMember method and remove the key. - if (parameters.members || parameters.empty) { + // If bucket contains `empty`, remove the members set + if (bucket.empty) { bulk.push( this.client.del( - `${this.index}:${encodeURIComponent(bucket.stream)}:${encodeURIComponent(bucket.id)}:members`, + `${this.index}:${encodeURIComponent(bucket.streamId)}:${encodeURIComponent(bucket.id)}:members`, ), ); - for (const member of parameters.members) { - await this.handleMember(member, bucket.id, bulk); - } - delete parameters.members; } - // Set streamId and id parameters - parameters.streamId = bucket.stream; - parameters.id = bucket.id; - bulk.push( this.client.json.set( - `${this.index}:${encodeURIComponent(bucket.stream)}:${encodeURIComponent(bucket.id)}`, + `${this.index}:${encodeURIComponent(bucket.streamId)}:${encodeURIComponent(bucket.id)}`, ".", - parameters, + bucket, ), ); } diff --git a/src/repositories/Repository.ts b/src/repositories/Repository.ts index 3271469..3577651 100644 --- a/src/repositories/Repository.ts +++ b/src/repositories/Repository.ts @@ -48,7 +48,6 @@ export interface Repository { handleBucket( bucket: Bucket, - parameters: any, bulk: IndexBulkOperations, ): Promise; @@ -64,14 +63,14 @@ export function getRepository(dbConfig: DBConfig): Repository { const url = dbConfig.url || env.DB_CONN_STRING || "mongodb://localhost:27017/ldes"; - if (url.startsWith("mongodb://")) { + if (url.startsWith("mongodb")) { return new MongoDBRepository( url, dbConfig.metadata, dbConfig.data, dbConfig.index, ); - } else if (url.startsWith("redis://")) { + } else if (url.startsWith("redis")) { return new RedisRepository( url, dbConfig.metadata, diff --git a/src/shape.ttl b/src/shape.ttl index d68f0f7..ff33d7e 100644 --- a/src/shape.ttl +++ b/src/shape.ttl @@ -41,7 +41,7 @@ sh:minCount 1; sh:maxCount 1; ], [ - sh:name "stream"; + sh:name "streamId"; sh:path sds:stream; sh:datatype xsd:string; sh:minCount 1; diff --git a/test/extractor.test.ts b/test/extractor.test.ts index 0b52fed..890a2ab 100644 --- a/test/extractor.test.ts +++ b/test/extractor.test.ts @@ -107,7 +107,7 @@ _:n3-26 x.stream)).toEqual([ + expect(buckets.map((x) => x.streamId)).toEqual([ "https://example.org/ns#", "https://example.org/ns#", "https://example.org/ns#",