From a2508d080ea3efcecf86479a8caebc10a432157a Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Tue, 26 Apr 2022 15:55:49 -0500 Subject: [PATCH 01/68] index on fea-json-to-dataframe: 4daef83e npm pack then install llnode due to npm changes (#385) --- modules/cudf/src/column.cpp | 2 + modules/cudf/src/column.ts | 11 +++++ modules/cudf/src/node_cudf/column.hpp | 3 ++ modules/cudf/src/node_cudf/table.hpp | 2 + modules/cudf/src/series.ts | 32 ++++++++++--- modules/cudf/src/table/multibyte_split.cpp | 52 ++++++++++++++++++++++ modules/cudf/test/cudf-column-tests.ts | 33 ++++++++++++++ 7 files changed, 130 insertions(+), 5 deletions(-) create mode 100644 modules/cudf/src/table/multibyte_split.cpp diff --git a/modules/cudf/src/column.cpp b/modules/cudf/src/column.cpp index 5b0fbdb7c..e92391532 100644 --- a/modules/cudf/src/column.cpp +++ b/modules/cudf/src/column.cpp @@ -148,6 +148,8 @@ Napi::Function Column::Init(Napi::Env const& env, Napi::Object exports) { InstanceMethod<&Column::matches_re>("matchesRe"), // column/strings/json.cpp InstanceMethod<&Column::get_json_object>("getJSONObject"), + // io/text/multibyte_split.cpp + StaticMethod<&Column::read_text>("read_text"), // column/strings/padding.cpp InstanceMethod<&Column::pad>("pad"), InstanceMethod<&Column::zfill>("zfill"), diff --git a/modules/cudf/src/column.ts b/modules/cudf/src/column.ts index dfc07ed54..00ccd1190 100644 --- a/modules/cudf/src/column.ts +++ b/modules/cudf/src/column.ts @@ -123,6 +123,17 @@ export interface ColumnConstructor { init: Scalar, step: Scalar, memoryResource?: MemoryResource): Column; + + /** + * Fills a column with the Utf-8 string located at filepath. + * + * @param filepath The location of the input file. + * @param delimiter Optional delimiter. + * @returns column with a single large string. + * + * @note The maximum size of a string read with this method is 2^30 + */ + read_text(filepath: string, delimiter?: string): Column; } /** diff --git a/modules/cudf/src/node_cudf/column.hpp b/modules/cudf/src/node_cudf/column.hpp index 14e5d5e7c..4b2e1d6f6 100644 --- a/modules/cudf/src/node_cudf/column.hpp +++ b/modules/cudf/src/node_cudf/column.hpp @@ -1033,6 +1033,9 @@ struct Column : public EnvLocalObjectWrap { Napi::Value string_is_ipv4(Napi::CallbackInfo const& info); Napi::Value ipv4_from_integers(Napi::CallbackInfo const& info); Napi::Value ipv4_to_integers(Napi::CallbackInfo const& info); + + // io/text.hpp + static Napi::Value read_text(Napi::CallbackInfo const& info); }; } // namespace nv diff --git a/modules/cudf/src/node_cudf/table.hpp b/modules/cudf/src/node_cudf/table.hpp index 7aeadf44e..54120a8c6 100644 --- a/modules/cudf/src/node_cudf/table.hpp +++ b/modules/cudf/src/node_cudf/table.hpp @@ -280,6 +280,8 @@ struct Table : public EnvLocalObjectWrap { static Napi::Value read_orc(Napi::CallbackInfo const& info); void write_orc(Napi::CallbackInfo const& info); + static Napi::Value read_text(Napi::CallbackInfo const& info); + static Napi::Value from_arrow(Napi::CallbackInfo const& info); Napi::Value to_arrow(Napi::CallbackInfo const& info); diff --git a/modules/cudf/src/series.ts b/modules/cudf/src/series.ts index 28853a79e..8e7c7fdd5 100644 --- a/modules/cudf/src/series.ts +++ b/modules/cudf/src/series.ts @@ -566,6 +566,28 @@ export class AbstractSeries { return Series.new(Column.sequence(opts.size, init, step, opts.memoryResource)); } + /** + * Constructs a Series with an input filename as source. + * + * @note If delimiter is omitted, the default is ''. + * + * @param filepath Path of the input file. + * @param delimiter Optional delimiter. + * + * @returns Series with the sequence + * + * @example + * ```typescript + * import {Series} from '@rapidsai/cudf'; + * + * Series.read_text('./inputAsciiFile.txt') + * ``` + */ + static read_text(opts: {filepath: string, delimiter?: string}): + Series { + return Series.new(Column.read_text(opts.filepath, opts.delimiter)); + } + /** @ignore */ declare public _col: Column; @@ -939,11 +961,11 @@ export class AbstractSeries { /** * @summary Return sub-selection from a Series using the specified integral indices. * - * @description Gathers the rows of the source columns according to `selection`, such that row "i" - * in the resulting Series's columns will contain row `selection[i]` from the source columns. The - * number of rows in the result series will be equal to the number of elements in selection. A - * negative value i in the selection is interpreted as i+n, where `n` is the number of rows in - * the source series. + * @description Gathers the rows of the source columns according to `selection`, such that row + * "i" in the resulting Series's columns will contain row `selection[i]` from the source + * columns. The number of rows in the result series will be equal to the number of elements in + * selection. A negative value i in the selection is interpreted as i+n, where `n` is the number + * of rows in the source series. * * For dictionary columns, the keys column component is copied and not trimmed if the gather * results in abandoned key elements. diff --git a/modules/cudf/src/table/multibyte_split.cpp b/modules/cudf/src/table/multibyte_split.cpp new file mode 100644 index 000000000..b1fceacdf --- /dev/null +++ b/modules/cudf/src/table/multibyte_split.cpp @@ -0,0 +1,52 @@ +// Copyright (c) 2021, NVIDIA CORPORATION. +// +// Licensed under the Apache License, Version 2.0 (the "License"); +// you may not use this file except in compliance with the License. +// You may obtain a copy of the License at +// +// http://www.apache.org/licenses/LICENSE-2.0 +// +// Unless required by applicable law or agreed to in writing, software +// distributed under the License is distributed on an "AS IS" BASIS, +// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +// See the License for the specific language governing permissions and +// limitations under the License. + +#include +#include + +#include +#include +#include + +namespace nv { + +namespace { + +Napi::Value read_text_files(Napi::CallbackInfo const& info, + std::string const& filename, + std::string const& delimiter) { + auto env = info.Env(); + auto datasource = cudf::io::text::make_source_from_file(filename); + return Column::New(env, cudf::io::text::multibyte_split(*datasource, delimiter)); +} + +} // namespace + +Napi::Value Column::read_text(Napi::CallbackInfo const& info) { + CallbackArgs args{info}; + + if (args.Length() != 2) { + NAPI_THROW( + Napi::Error::New(info.Env(), "read_text expects a filename and an optional delimiter")); + } + + auto source = args[0]; + auto delimiter = args[1]; + + try { + return ::nv::read_text_files(info, source, delimiter); + } catch (cudf::logic_error const& err) { NAPI_THROW(Napi::Error::New(info.Env(), err.what())); } +} + +} // namespace nv diff --git a/modules/cudf/test/cudf-column-tests.ts b/modules/cudf/test/cudf-column-tests.ts index eb60b37c1..890c339be 100644 --- a/modules/cudf/test/cudf-column-tests.ts +++ b/modules/cudf/test/cudf-column-tests.ts @@ -22,6 +22,8 @@ import { import {Bool8, Column, Float32, Float64, Int32, Series, Uint8, Utf8String} from '@rapidsai/cudf'; import {CudaMemoryResource, DeviceBuffer} from '@rapidsai/rmm'; import {BoolVector} from 'apache-arrow'; +import {promises} from 'fs'; +import * as Path from 'path'; const mr = new CudaMemoryResource(); @@ -348,3 +350,34 @@ describe('Column.setNullMask', () => { validateSetNullMask(makeTestColumn(4), 4, 4, new Uint8Buffer(new DeviceMemory(8)).fill(0)); }); }); + +describe('Column.read_text', () => { + test('can read a json file', async () => { + const rows = [ + {a: 0, b: 1.0, c: '2'}, + {a: 1, b: 2.0, c: '3'}, + {a: 2, b: 3.0, c: '4'}, + ]; + const outputString = JSON.stringify(rows) + const path = Path.join(readTextTmpDir, 'simple.txt'); + await promises.writeFile(path, outputString); + const text = Column.read_text(path); + expect(text.getValue(0)).toEqual(outputString); + await new Promise((resolve, reject) => + rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); + }); +}); + +let readTextTmpDir = ''; + +const rimraf = require('rimraf'); + +beforeAll(async () => { // + readTextTmpDir = await promises.mkdtemp(Path.join('/tmp', 'node_cudf')); +}); + +afterAll(() => { + return new Promise((resolve, reject) => { // + rimraf(readTextTmpDir, (err?: Error|null) => err ? reject(err) : resolve()); + }); +}); From 9a5ce7ebd3f958f7a580043943624232add3b8e2 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Mon, 2 May 2022 17:16:00 -0500 Subject: [PATCH 02/68] Add split component of multibyte_split for better parsing. --- modules/cudf/src/column.cpp | 1 + modules/cudf/src/column.ts | 9 ++ modules/cudf/src/data_frame.ts | 40 +++++++ modules/cudf/src/node_cudf/column.hpp | 3 + modules/cudf/src/series.ts | 3 +- modules/cudf/src/table/multibyte_split.cpp | 38 ++++++- modules/cudf/test/cudf-column-tests.ts | 126 ++++++++++++++++----- node-rapids.code-workspace | 7 +- package.json | 1 + yarn.lock | 12 ++ 10 files changed, 200 insertions(+), 40 deletions(-) diff --git a/modules/cudf/src/column.cpp b/modules/cudf/src/column.cpp index e92391532..a9cbcfe92 100644 --- a/modules/cudf/src/column.cpp +++ b/modules/cudf/src/column.cpp @@ -150,6 +150,7 @@ Napi::Function Column::Init(Napi::Env const& env, Napi::Object exports) { InstanceMethod<&Column::get_json_object>("getJSONObject"), // io/text/multibyte_split.cpp StaticMethod<&Column::read_text>("read_text"), + InstanceMethod<&Column::split>("split"), // column/strings/padding.cpp InstanceMethod<&Column::pad>("pad"), InstanceMethod<&Column::zfill>("zfill"), diff --git a/modules/cudf/src/column.ts b/modules/cudf/src/column.ts index 00ccd1190..75cf17a2c 100644 --- a/modules/cudf/src/column.ts +++ b/modules/cudf/src/column.ts @@ -1470,6 +1470,15 @@ export interface Column { */ replaceSlice(repl: string, start: number, stop: number, memoryResource?: MemoryResource): Column; + + /** + * Splits a string column. + * + * @param memoryResource The optional MemoryResource used to allocate the result Column's device + * memory. + * @returns New strings column + */ + split(delimiter: string): Column; } // eslint-disable-next-line @typescript-eslint/no-redeclare diff --git a/modules/cudf/src/data_frame.ts b/modules/cudf/src/data_frame.ts index f6891a4db..aad8fc26b 100644 --- a/modules/cudf/src/data_frame.ts +++ b/modules/cudf/src/data_frame.ts @@ -47,6 +47,12 @@ import {ColumnsMap, CommonType, TypeMap} from './types/mappings'; import {ReadORCOptions, WriteORCOptions} from './types/orc'; import {ReadParquetOptions, WriteParquetOptions} from './types/parquet'; +const fs = require('fs'); +const zlib = require('zlib'); +const {chain} = require('stream-chain'); +const {parser} = require('stream-json'); +const {streamObject} = require('stream-json/streamers/StreamObject'); + export type SeriesMap = { [P in keyof T]: {readonly type: T[P]} }; @@ -2115,4 +2121,38 @@ export class DataFrame { (map, name, i) => ({...map, [name]: this.__constructChild(name, table.getColumnByIndex(i))}), {} as SeriesMap)); } + + /** + * ``` + */ + public static hostReadJson(filepath: string): any { + /* + if (memory instanceof ArrayBuffer || ArrayBuffer.isView(memory)) { + memory = new Uint8Buffer(memory); + } + if (memory instanceof MemoryView) { memory = memory.buffer; } + */ + console.log('hello'); + const result: any[] = []; + (async () => { + try { + for await (const {value: row} of chain( + [fs.createReadStream(filepath), zlib.createGunzip(), parser(), streamObject()])) { + // for key in row: + // result[key].append(row[key]) + result.push(row.toString()); + } + } catch (e) { console.log('caught', e); } + })() + .then( + (msg: any) => { + console.log('done'); + console.log(msg); + }, + (err: any) => { + console.log('error'); + console.log(err); + }); + return result; + } } diff --git a/modules/cudf/src/node_cudf/column.hpp b/modules/cudf/src/node_cudf/column.hpp index 4b2e1d6f6..4a50e1cca 100644 --- a/modules/cudf/src/node_cudf/column.hpp +++ b/modules/cudf/src/node_cudf/column.hpp @@ -856,6 +856,8 @@ struct Column : public EnvLocalObjectWrap { Column::wrapper_t ipv4_to_integers( rmm::mr::device_memory_resource* mr = rmm::mr::get_current_device_resource()) const; + Column::wrapper_t read_text(); + private: cudf::size_type size_{}; ///< The number of elements in the column cudf::size_type offset_{}; ///< The offset of elements in the data @@ -1036,6 +1038,7 @@ struct Column : public EnvLocalObjectWrap { // io/text.hpp static Napi::Value read_text(Napi::CallbackInfo const& info); + Napi::Value split(Napi::CallbackInfo const& info); }; } // namespace nv diff --git a/modules/cudf/src/series.ts b/modules/cudf/src/series.ts index 8e7c7fdd5..67fef07b0 100644 --- a/modules/cudf/src/series.ts +++ b/modules/cudf/src/series.ts @@ -583,8 +583,7 @@ export class AbstractSeries { * Series.read_text('./inputAsciiFile.txt') * ``` */ - static read_text(opts: {filepath: string, delimiter?: string}): - Series { + static read_text(opts: {filepath: string, delimiter?: string}): Series { return Series.new(Column.read_text(opts.filepath, opts.delimiter)); } diff --git a/modules/cudf/src/table/multibyte_split.cpp b/modules/cudf/src/table/multibyte_split.cpp index b1fceacdf..5686236a9 100644 --- a/modules/cudf/src/table/multibyte_split.cpp +++ b/modules/cudf/src/table/multibyte_split.cpp @@ -23,16 +23,41 @@ namespace nv { namespace { -Napi::Value read_text_files(Napi::CallbackInfo const& info, - std::string const& filename, - std::string const& delimiter) { - auto env = info.Env(); +Column::wrapper_t split_string_column(Napi::CallbackInfo const& info, + cudf::mutable_column_view const& col, + std::string const& delimiter) { + auto env = info.Env(); + /* TODO: This only splits a string column. How to generalize */ + // Check type + auto span = cudf::device_span(col.child(1).data(), col.child(1).size()); + + auto datasource = cudf::io::text::device_span_data_chunk_source(span); + return Column::New(env, cudf::io::text::multibyte_split(datasource, delimiter)); +} + +Column::wrapper_t read_text_files(Napi::CallbackInfo const& info, + std::string const& filename, + std::string const& delimiter) { auto datasource = cudf::io::text::make_source_from_file(filename); - return Column::New(env, cudf::io::text::multibyte_split(*datasource, delimiter)); + auto text_data = cudf::io::text::multibyte_split(*datasource, delimiter); + auto env = info.Env(); + return Column::New(env, std::move(text_data)); } } // namespace +Napi::Value Column::split(Napi::CallbackInfo const& info) { + CallbackArgs args{info}; + + if (args.Length() != 1) { NAPI_THROW(Napi::Error::New(info.Env(), "split expects a delimiter")); } + + auto delimiter = args[0]; + auto col = this->mutable_view(); + try { + return split_string_column(info, col, delimiter); + } catch (cudf::logic_error const& err) { NAPI_THROW(Napi::Error::New(info.Env(), err.what())); } +} + Napi::Value Column::read_text(Napi::CallbackInfo const& info) { CallbackArgs args{info}; @@ -45,7 +70,8 @@ Napi::Value Column::read_text(Napi::CallbackInfo const& info) { auto delimiter = args[1]; try { - return ::nv::read_text_files(info, source, delimiter); + return read_text_files(info, source, delimiter); + } catch (cudf::logic_error const& err) { NAPI_THROW(Napi::Error::New(info.Env(), err.what())); } } diff --git a/modules/cudf/test/cudf-column-tests.ts b/modules/cudf/test/cudf-column-tests.ts index 890c339be..5015b413d 100644 --- a/modules/cudf/test/cudf-column-tests.ts +++ b/modules/cudf/test/cudf-column-tests.ts @@ -25,10 +25,105 @@ import {BoolVector} from 'apache-arrow'; import {promises} from 'fs'; import * as Path from 'path'; +/* +const fs = require('fs'); +const zlib = require('zlib'); +const {chain} = require('stream-chain'); +const {parser} = require('stream-json'); +const {streamObject} = require('stream-json/streamers/StreamObject'); +describe('testing json stream', () => { + test('basic parsing', () => { + console.log('basic parsing'); + (async () => { + for await (const {value: row} of chain([ + fs.createReadStream(Path.join('/tmp/' + + 'dataset_full.json.gz')), + zlib.createGunzip(), + parser(), + streamObject() + ])) { + console.log(row); + } + })() + .then( + (msg) => { + console.log('done'); + console.log(msg); + }, + (err) => { + console.log('error'); + console.log(err); + }) + }); +}); +*/ +describe('Column.read_text', () => { + test('can read a json file', async () => { + const rows = [ + {a: 0, b: 1.0, c: '2'}, + {a: 1, b: 2.0, c: '3'}, + {a: 2, b: 3.0, c: '4'}, + ]; + const outputString = JSON.stringify(rows); + const path = Path.join(readTextTmpDir, 'simple.txt'); + await promises.writeFile(path, outputString); + const text = Column.read_text(path, ''); + expect(text.getValue(0)).toEqual(outputString); + await new Promise((resolve, reject) => + rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); + }); + test('can read a random file', async () => { + const outputString = 'abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789!@#$%^&*()'; + const path = Path.join(readTextTmpDir, 'simple.txt'); + await promises.writeFile(path, outputString); + const text = Column.read_text(path, ''); + expect(text.getValue(0)).toEqual(outputString); + await new Promise((resolve, reject) => + rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); + }); + test('can read an empty file', async () => { + const outputString = ''; + const path = Path.join(readTextTmpDir, 'simple.txt'); + await promises.writeFile(path, outputString); + const text = Column.read_text(path, ''); + expect(text.getValue(0)).toEqual(outputString); + await new Promise((resolve, reject) => + rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); + }); +}); + +let readTextTmpDir = ''; + +const rimraf = require('rimraf'); + +beforeAll(async () => { // + readTextTmpDir = await promises.mkdtemp(Path.join('/tmp', 'node_cudf')); +}); + +afterAll(() => { + return new Promise((resolve, reject) => { // + rimraf(readTextTmpDir, (err?: Error|null) => err ? reject(err) : resolve()); + }); +}); const mr = new CudaMemoryResource(); setDefaultAllocator((byteLength) => new DeviceBuffer(byteLength, mr)); +describe('Column split', () => { + test('split a basic string', () => { + const input = Series.new(['abcdefg']); + const example = Series.new(['abcd', 'efg']); + const result = Series.new(input._col.split('d')); + expect(result).toEqual(example); + }); + test('split a string twice', () => { + const input = Series.new(['abcdefgdcba']); + const example = Series.new(['abcd', 'efgd', 'cba']); + const result = Series.new(input._col.split('d')); + expect(result).toEqual(example); + }); +}); + test('Column initialization', () => { const length = 100; const col = new Column({type: new Int32, data: new Int32Buffer(length)}); @@ -350,34 +445,3 @@ describe('Column.setNullMask', () => { validateSetNullMask(makeTestColumn(4), 4, 4, new Uint8Buffer(new DeviceMemory(8)).fill(0)); }); }); - -describe('Column.read_text', () => { - test('can read a json file', async () => { - const rows = [ - {a: 0, b: 1.0, c: '2'}, - {a: 1, b: 2.0, c: '3'}, - {a: 2, b: 3.0, c: '4'}, - ]; - const outputString = JSON.stringify(rows) - const path = Path.join(readTextTmpDir, 'simple.txt'); - await promises.writeFile(path, outputString); - const text = Column.read_text(path); - expect(text.getValue(0)).toEqual(outputString); - await new Promise((resolve, reject) => - rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); - }); -}); - -let readTextTmpDir = ''; - -const rimraf = require('rimraf'); - -beforeAll(async () => { // - readTextTmpDir = await promises.mkdtemp(Path.join('/tmp', 'node_cudf')); -}); - -afterAll(() => { - return new Promise((resolve, reject) => { // - rimraf(readTextTmpDir, (err?: Error|null) => err ? reject(err) : resolve()); - }); -}); diff --git a/node-rapids.code-workspace b/node-rapids.code-workspace index fe524288c..70a506b27 100644 --- a/node-rapids.code-workspace +++ b/node-rapids.code-workspace @@ -229,7 +229,12 @@ "**/.cmake-js/**": true, "**/node_modules/**": true }, - "typescript.tsdk": "node-rapids/node_modules/typescript/lib" + "typescript.tsdk": "node-rapids/node_modules/typescript/lib", + "workbench.colorCustomizations": { + "activityBar.background": "#193409", + "titleBar.activeBackground": "#23480C", + "titleBar.activeForeground": "#F5FCF0" + } }, "tasks": { "version": "2.0.0", diff --git a/package.json b/package.json index 230214168..beb35dec6 100644 --- a/package.json +++ b/package.json @@ -90,6 +90,7 @@ "pre-git": "3.17.1", "rimraf": "3.0.0", "shx": "0.3.3", + "stream-json": "1.7.4", "typedoc": "0.22.10" }, "config": { diff --git a/yarn.lock b/yarn.lock index af451ec82..99c538ee0 100644 --- a/yarn.lock +++ b/yarn.lock @@ -13017,6 +13017,11 @@ stream-browserify@^2.0.1: inherits "~2.0.1" readable-stream "^2.0.2" +stream-chain@^2.2.5: + version "2.2.5" + resolved "https://registry.npmjs.org/stream-chain/-/stream-chain-2.2.5.tgz#b30967e8f14ee033c5b9a19bbe8a2cba90ba0d09" + integrity sha512-1TJmBx6aSWqZ4tx7aTpBDXK0/e2hhcNSTV8+CbFJtDjbb+I1mZ8lHit0Grw9GRT+6JbIrrDd8esncgBi8aBXGA== + stream-each@^1.1.0: version "1.2.3" resolved "https://registry.npmjs.org/stream-each/-/stream-each-1.2.3.tgz#ebe27a0c389b04fbcc233642952e10731afa9bae" @@ -13046,6 +13051,13 @@ stream-http@^2.7.2: to-arraybuffer "^1.0.0" xtend "^4.0.0" +stream-json@1.7.4: + version "1.7.4" + resolved "https://registry.npmjs.org/stream-json/-/stream-json-1.7.4.tgz#e41637f93c5aca7267009ca8a3f6751e62331e69" + integrity sha512-ja2dde1v7dOlx5/vmavn8kLrxvNfs7r2oNc5DYmNJzayDDdudyCSuTB1gFjH4XBVTIwxiMxL4i059HX+ZiouXg== + dependencies: + stream-chain "^2.2.5" + stream-parser@^0.3.1: version "0.3.1" resolved "https://registry.npmjs.org/stream-parser/-/stream-parser-0.3.1.tgz#1618548694420021a1182ff0af1911c129761773" From 0fdeb9cb0f03431bc49196ab3b1591450677dcaf Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Wed, 4 May 2022 13:16:21 -0500 Subject: [PATCH 03/68] Added json_aos_to_dataframe. --- modules/cudf/src/column.ts | 22 +++---- modules/cudf/src/series.ts | 22 ------- modules/cudf/src/series/string.ts | 31 ++++++++- modules/cudf/test/cudf-column-tests.ts | 89 ++++++++++++++++---------- 4 files changed, 94 insertions(+), 70 deletions(-) diff --git a/modules/cudf/src/column.ts b/modules/cudf/src/column.ts index 75cf17a2c..b506c8826 100644 --- a/modules/cudf/src/column.ts +++ b/modules/cudf/src/column.ts @@ -123,17 +123,6 @@ export interface ColumnConstructor { init: Scalar, step: Scalar, memoryResource?: MemoryResource): Column; - - /** - * Fills a column with the Utf-8 string located at filepath. - * - * @param filepath The location of the input file. - * @param delimiter Optional delimiter. - * @returns column with a single large string. - * - * @note The maximum size of a string read with this method is 2^30 - */ - read_text(filepath: string, delimiter?: string): Column; } /** @@ -1471,6 +1460,17 @@ export interface Column { replaceSlice(repl: string, start: number, stop: number, memoryResource?: MemoryResource): Column; + /** + * Fills a string column with the Utf-8 string located at filepath. + * + * @param filepath The location of the input file. + * @param delimiter Optional delimiter. + * @returns column with a single large string. + * + * @note The maximum size of a string read with this method is 2^30 + */ + read_text(filepath: string, delimiter: string): Column; + /** * Splits a string column. * diff --git a/modules/cudf/src/series.ts b/modules/cudf/src/series.ts index 67fef07b0..b91903e72 100644 --- a/modules/cudf/src/series.ts +++ b/modules/cudf/src/series.ts @@ -565,28 +565,6 @@ export class AbstractSeries { const step = new Scalar({type, value: opts.step ?? 1}) as Scalar; return Series.new(Column.sequence(opts.size, init, step, opts.memoryResource)); } - - /** - * Constructs a Series with an input filename as source. - * - * @note If delimiter is omitted, the default is ''. - * - * @param filepath Path of the input file. - * @param delimiter Optional delimiter. - * - * @returns Series with the sequence - * - * @example - * ```typescript - * import {Series} from '@rapidsai/cudf'; - * - * Series.read_text('./inputAsciiFile.txt') - * ``` - */ - static read_text(opts: {filepath: string, delimiter?: string}): Series { - return Series.new(Column.read_text(opts.filepath, opts.delimiter)); - } - /** @ignore */ declare public _col: Column; diff --git a/modules/cudf/src/series/string.ts b/modules/cudf/src/series/string.ts index 2cb28da1e..b14fb02d2 100644 --- a/modules/cudf/src/series/string.ts +++ b/modules/cudf/src/series/string.ts @@ -444,6 +444,32 @@ export class StringSeries extends Series { zfill(width: number, memoryResource?: MemoryResource): Series { return this.__construct(this._col.zfill(width, memoryResource)); } + /* split + */ + split(delimiter: string): Series { + return this.__construct(this._col.split(delimiter)); + } + + /** + * Constructs a Series with an input filename as source. + * + * @note If delimiter is omitted, the default is ''. + * + * @param filepath Path of the input file. + * @param delimiter Optional delimiter. + * + * @returns Series with the sequence + * + * @example + * ```typescript + * import {Series} from '@rapidsai/cudf'; + * + * Series.read_text('./inputAsciiFile.txt') + * ``` + */ + public static read_text(filepath: string, delimiter: string): Series { + return StringSeries.new(Column.read_text(filepath, delimiter)); + } /** * Applies a JSONPath(string) where each row in the series is a valid json string. Returns New @@ -468,8 +494,9 @@ export class StringSeries extends Series { * [...a.getJSONObject("$.foo").map(JSON.parse)] // object [{ bar: 'baz' }, { baz: 'bar' }] * ``` */ - getJSONObject(jsonPath: string, memoryResource?: MemoryResource): Series { - return this.__construct(this._col.getJSONObject(jsonPath, memoryResource)); + public static getJSONObject(jsonPath: string, + memoryResource?: MemoryResource): Series { + return Series.new(this.getJSONObject(jsonPath, memoryResource)); } /** diff --git a/modules/cudf/test/cudf-column-tests.ts b/modules/cudf/test/cudf-column-tests.ts index 5015b413d..8c6632185 100644 --- a/modules/cudf/test/cudf-column-tests.ts +++ b/modules/cudf/test/cudf-column-tests.ts @@ -19,44 +19,64 @@ import { setDefaultAllocator, Uint8Buffer } from '@rapidsai/cuda'; -import {Bool8, Column, Float32, Float64, Int32, Series, Uint8, Utf8String} from '@rapidsai/cudf'; +import { + arrowToCUDFType, + Bool8, + Column, + DataFrame, + DataType, + Float32, + Float64, + Int32, + Series, + SeriesMap, + StringSeries, + TypeMap, + Uint8, + Utf8String +} from '@rapidsai/cudf'; import {CudaMemoryResource, DeviceBuffer} from '@rapidsai/rmm'; import {BoolVector} from 'apache-arrow'; import {promises} from 'fs'; import * as Path from 'path'; -/* -const fs = require('fs'); -const zlib = require('zlib'); -const {chain} = require('stream-chain'); -const {parser} = require('stream-json'); -const {streamObject} = require('stream-json/streamers/StreamObject'); -describe('testing json stream', () => { - test('basic parsing', () => { - console.log('basic parsing'); - (async () => { - for await (const {value: row} of chain([ - fs.createReadStream(Path.join('/tmp/' + - 'dataset_full.json.gz')), - zlib.createGunzip(), - parser(), - streamObject() - ])) { - console.log(row); - } - })() - .then( - (msg) => { - console.log('done'); - console.log(msg); - }, - (err) => { - console.log('error'); - console.log(err); - }) +/* TODO: How do I apply a list of dtypes? + */ +function json_aos_to_dataframe( + str: StringSeries, columns: ReadonlyArray, dtypes: ArrayLike): DataFrame { + const arr = {} as SeriesMap; + columns.forEach((col, ix) => { + const no_open_list = str.split('[\n').gather([1], false); + const tokenized = no_open_list.split(',\n'); + console.log(tokenized.toArray()); + const parse_result = tokenized._col.getJSONObject('.' + columns[ix]); + arr[col] = Series.new(parse_result); + console.log(Series.new(parse_result).toArray()); + }); + const result = new DataFrame(arr); + return result; +} + +describe('Graphology dataset parsing', () => { + test('extracts four objects from the base object', () => { + const dataset = StringSeries.read_text('dataset_small.json.txt', ''); + let split = dataset.split('"tags":'); + const ttags = split.gather([1], false); + let rest = split.gather([0], false); + split = rest.split('"clusters":'); + const tclusters = split.gather([1], false); + rest = split.gather([0], false); + split = rest.split('"edges":'); + const tedges = split.gather([1], false); + rest = split.gather([0], false); + split = rest.split('"nodes":'); + const tnodes = split.gather([1], false); + const tags = json_aos_to_dataframe(ttags, ['key', 'image'], [new Utf8String, new Utf8String]); + console.log(tags); + expect(tags).toEqual(tedges); }); }); -*/ + describe('Column.read_text', () => { test('can read a json file', async () => { const rows = [ @@ -67,7 +87,7 @@ describe('Column.read_text', () => { const outputString = JSON.stringify(rows); const path = Path.join(readTextTmpDir, 'simple.txt'); await promises.writeFile(path, outputString); - const text = Column.read_text(path, ''); + const text = StringSeries.read_text(path, ''); expect(text.getValue(0)).toEqual(outputString); await new Promise((resolve, reject) => rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); @@ -76,7 +96,7 @@ describe('Column.read_text', () => { const outputString = 'abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789!@#$%^&*()'; const path = Path.join(readTextTmpDir, 'simple.txt'); await promises.writeFile(path, outputString); - const text = Column.read_text(path, ''); + const text = StringSeries.read_text(path, ''); expect(text.getValue(0)).toEqual(outputString); await new Promise((resolve, reject) => rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); @@ -85,7 +105,7 @@ describe('Column.read_text', () => { const outputString = ''; const path = Path.join(readTextTmpDir, 'simple.txt'); await promises.writeFile(path, outputString); - const text = Column.read_text(path, ''); + const text = StringSeries.read_text(path, ''); expect(text.getValue(0)).toEqual(outputString); await new Promise((resolve, reject) => rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); @@ -143,7 +163,6 @@ test('Column initialization with null_mask', () => { nullMask: new Uint8Buffer(64).fill(0), }); - expect(col.type).toBeInstanceOf(Bool8); expect(col.length).toBe(length); expect(col.nullCount).toBe(100); expect(col.hasNulls).toBe(true); From e9b317369e1ebefce38ccd9c05c8def9914692d5 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Wed, 4 May 2022 14:01:01 -0500 Subject: [PATCH 04/68] Add the full test for loading the graphology dataset. --- modules/cudf/test/cudf-column-tests.ts | 48 +++++++++++++++++++++----- 1 file changed, 40 insertions(+), 8 deletions(-) diff --git a/modules/cudf/test/cudf-column-tests.ts b/modules/cudf/test/cudf-column-tests.ts index 8c6632185..91486f970 100644 --- a/modules/cudf/test/cudf-column-tests.ts +++ b/modules/cudf/test/cudf-column-tests.ts @@ -20,7 +20,6 @@ import { Uint8Buffer } from '@rapidsai/cuda'; import { - arrowToCUDFType, Bool8, Column, DataFrame, @@ -31,7 +30,6 @@ import { Series, SeriesMap, StringSeries, - TypeMap, Uint8, Utf8String } from '@rapidsai/cudf'; @@ -42,15 +40,30 @@ import * as Path from 'path'; /* TODO: How do I apply a list of dtypes? */ -function json_aos_to_dataframe( - str: StringSeries, columns: ReadonlyArray, dtypes: ArrayLike): DataFrame { +function json_aos_to_dataframe( + str: StringSeries, columns: ReadonlyArray, dtypes: ReadonlyArray): DataFrame { const arr = {} as SeriesMap; columns.forEach((col, ix) => { const no_open_list = str.split('[\n').gather([1], false); - const tokenized = no_open_list.split(',\n'); + const tokenized = no_open_list.split('},n'); console.log(tokenized.toArray()); const parse_result = tokenized._col.getJSONObject('.' + columns[ix]); - arr[col] = Series.new(parse_result); + arr[col] = Series.new({type: dtypes[ix], data: parse_result}); + console.log(Series.new(parse_result).toArray()); + }); + const result = new DataFrame(arr); + return result; +} +/* TODO: How do I apply a list of dtypes? + */ +function json_aoa_to_dataframe(str: StringSeries, dtypes: ReadonlyArray): DataFrame { + const arr = {} as SeriesMap; + dtypes.forEach((dtype, ix) => { + const no_open_list = str.split('[\n').gather([1], false); + const tokenized = no_open_list.split('],\n'); + console.log(tokenized.toArray()); + const parse_result = tokenized._col.getJSONObject(`[%ix]`); + arr[ix] = Series.new(parse_result); console.log(Series.new(parse_result).toArray()); }); const result = new DataFrame(arr); @@ -72,8 +85,27 @@ describe('Graphology dataset parsing', () => { split = rest.split('"nodes":'); const tnodes = split.gather([1], false); const tags = json_aos_to_dataframe(ttags, ['key', 'image'], [new Utf8String, new Utf8String]); - console.log(tags); - expect(tags).toEqual(tedges); + const clusters = json_aos_to_dataframe( + tclusters, ['key', 'color', 'clusterLabel'], [new Int32, new Utf8String, new Utf8String]); + const nodes = + json_aos_to_dataframe(tnodes, ['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score'], [ + new Utf8String, + new Utf8String, + new Utf8String, + new Utf8String, + new Int32, + new Float64, + new Float64, + new Int32 + ]); + const edges = json_aoa_to_dataframe(tedges, [new Utf8String, new Utf8String]); + expect(nodes.names).toEqual(['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score']); + expect(nodes.numRows).toEqual(5); + expect(edges.numRows).toEqual(9); + expect(clusters.names).toEqual(['key', 'color', 'clusterLabel']); + expect(clusters.numRows).toEqual(25); + expect(tags.names).toEqual(['key', 'image']); + expect(tags.numRows).toEqual(10); }); }); From 7cecc718c6d5623d38abf74a327f1fe51444809a Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Wed, 4 May 2022 14:28:44 -0500 Subject: [PATCH 05/68] Passing test, needs a good fixture now though. --- modules/cudf/test/cudf-column-tests.ts | 21 ++++++++++----------- 1 file changed, 10 insertions(+), 11 deletions(-) diff --git a/modules/cudf/test/cudf-column-tests.ts b/modules/cudf/test/cudf-column-tests.ts index 91486f970..2db108026 100644 --- a/modules/cudf/test/cudf-column-tests.ts +++ b/modules/cudf/test/cudf-column-tests.ts @@ -41,14 +41,14 @@ import * as Path from 'path'; /* TODO: How do I apply a list of dtypes? */ function json_aos_to_dataframe( - str: StringSeries, columns: ReadonlyArray, dtypes: ReadonlyArray): DataFrame { + str: StringSeries, columns: ReadonlyArray, _: ReadonlyArray): DataFrame { const arr = {} as SeriesMap; columns.forEach((col, ix) => { const no_open_list = str.split('[\n').gather([1], false); - const tokenized = no_open_list.split('},n'); + const tokenized = no_open_list.split('},'); console.log(tokenized.toArray()); const parse_result = tokenized._col.getJSONObject('.' + columns[ix]); - arr[col] = Series.new({type: dtypes[ix], data: parse_result}); + arr[col] = Series.new(parse_result); console.log(Series.new(parse_result).toArray()); }); const result = new DataFrame(arr); @@ -58,13 +58,12 @@ function json_aos_to_dataframe( */ function json_aoa_to_dataframe(str: StringSeries, dtypes: ReadonlyArray): DataFrame { const arr = {} as SeriesMap; - dtypes.forEach((dtype, ix) => { + dtypes.forEach((_, ix) => { const no_open_list = str.split('[\n').gather([1], false); - const tokenized = no_open_list.split('],\n'); - console.log(tokenized.toArray()); - const parse_result = tokenized._col.getJSONObject(`[%ix]`); + const tokenized = no_open_list.split('],'); + const get_ix = `[${ix}]`; + const parse_result = tokenized._col.getJSONObject(get_ix); arr[ix] = Series.new(parse_result); - console.log(Series.new(parse_result).toArray()); }); const result = new DataFrame(arr); return result; @@ -101,11 +100,11 @@ describe('Graphology dataset parsing', () => { const edges = json_aoa_to_dataframe(tedges, [new Utf8String, new Utf8String]); expect(nodes.names).toEqual(['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score']); expect(nodes.numRows).toEqual(5); - expect(edges.numRows).toEqual(9); + expect(edges.numRows).toEqual(11); expect(clusters.names).toEqual(['key', 'color', 'clusterLabel']); - expect(clusters.numRows).toEqual(25); + expect(clusters.numRows).toEqual(24); expect(tags.names).toEqual(['key', 'image']); - expect(tags.numRows).toEqual(10); + expect(tags.numRows).toEqual(11); }); }); From 16163aaacb7d4bc1b6c8b2ae80207da13a48f8e8 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Thu, 5 May 2022 13:13:48 -0500 Subject: [PATCH 06/68] Add less to dockerfile for git diff. Tweak the APIs slightly. --- dev/dockerfiles/devel/main.Dockerfile | 2 +- modules/cudf/src/column.ts | 22 +++++++++++----------- modules/cudf/src/node_cudf/column.hpp | 2 -- modules/cudf/src/node_cudf/table.hpp | 2 -- modules/cudf/test/cudf-column-tests.ts | 2 +- 5 files changed, 13 insertions(+), 17 deletions(-) diff --git a/dev/dockerfiles/devel/main.Dockerfile b/dev/dockerfiles/devel/main.Dockerfile index 8f3cf7ced..130e65f98 100644 --- a/dev/dockerfiles/devel/main.Dockerfile +++ b/dev/dockerfiles/devel/main.Dockerfile @@ -317,7 +317,7 @@ RUN --mount=type=cache,target=/var/lib/apt \ \ && apt update \ && apt install --no-install-recommends -y \ - jq entr nano sudo bash-completion \ + jq entr nano sudo less bash-completion \ # X11 dependencies libxi-dev libxrandr-dev libxinerama-dev libxcursor-dev \ # node-canvas dependencies diff --git a/modules/cudf/src/column.ts b/modules/cudf/src/column.ts index b506c8826..ec1331829 100644 --- a/modules/cudf/src/column.ts +++ b/modules/cudf/src/column.ts @@ -123,6 +123,17 @@ export interface ColumnConstructor { init: Scalar, step: Scalar, memoryResource?: MemoryResource): Column; + + /** + * Fills a column with the Utf-8 string located at filepath. + * + * @param filepath The location of the input file. + * @param delimiter Optional delimiter. + * @returns column with a single large string. + * + * @note The maximum size of a string read with this method is 2^30 + */ + read_text(filepath: string, delimiter: string): Column; } /** @@ -1460,17 +1471,6 @@ export interface Column { replaceSlice(repl: string, start: number, stop: number, memoryResource?: MemoryResource): Column; - /** - * Fills a string column with the Utf-8 string located at filepath. - * - * @param filepath The location of the input file. - * @param delimiter Optional delimiter. - * @returns column with a single large string. - * - * @note The maximum size of a string read with this method is 2^30 - */ - read_text(filepath: string, delimiter: string): Column; - /** * Splits a string column. * diff --git a/modules/cudf/src/node_cudf/column.hpp b/modules/cudf/src/node_cudf/column.hpp index 4a50e1cca..268e0ccbe 100644 --- a/modules/cudf/src/node_cudf/column.hpp +++ b/modules/cudf/src/node_cudf/column.hpp @@ -856,8 +856,6 @@ struct Column : public EnvLocalObjectWrap { Column::wrapper_t ipv4_to_integers( rmm::mr::device_memory_resource* mr = rmm::mr::get_current_device_resource()) const; - Column::wrapper_t read_text(); - private: cudf::size_type size_{}; ///< The number of elements in the column cudf::size_type offset_{}; ///< The offset of elements in the data diff --git a/modules/cudf/src/node_cudf/table.hpp b/modules/cudf/src/node_cudf/table.hpp index 54120a8c6..7aeadf44e 100644 --- a/modules/cudf/src/node_cudf/table.hpp +++ b/modules/cudf/src/node_cudf/table.hpp @@ -280,8 +280,6 @@ struct Table : public EnvLocalObjectWrap
{ static Napi::Value read_orc(Napi::CallbackInfo const& info); void write_orc(Napi::CallbackInfo const& info); - static Napi::Value read_text(Napi::CallbackInfo const& info); - static Napi::Value from_arrow(Napi::CallbackInfo const& info); Napi::Value to_arrow(Napi::CallbackInfo const& info); diff --git a/modules/cudf/test/cudf-column-tests.ts b/modules/cudf/test/cudf-column-tests.ts index 2db108026..c712862fb 100644 --- a/modules/cudf/test/cudf-column-tests.ts +++ b/modules/cudf/test/cudf-column-tests.ts @@ -108,7 +108,7 @@ describe('Graphology dataset parsing', () => { }); }); -describe('Column.read_text', () => { +describe('StringSeries.read_text', () => { test('can read a json file', async () => { const rows = [ {a: 0, b: 1.0, c: '2'}, From f2494ac4a9fe56d377003fbd46aa4b40bb767710 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Thu, 5 May 2022 13:31:11 -0500 Subject: [PATCH 07/68] Commit various change requests. --- modules/cudf/src/series/string.ts | 2 +- modules/cudf/src/table/multibyte_split.cpp | 78 ---------------------- node-rapids.code-workspace | 7 +- package.json | 1 - 4 files changed, 2 insertions(+), 86 deletions(-) delete mode 100644 modules/cudf/src/table/multibyte_split.cpp diff --git a/modules/cudf/src/series/string.ts b/modules/cudf/src/series/string.ts index b14fb02d2..cc3a86505 100644 --- a/modules/cudf/src/series/string.ts +++ b/modules/cudf/src/series/string.ts @@ -468,7 +468,7 @@ export class StringSeries extends Series { * ``` */ public static read_text(filepath: string, delimiter: string): Series { - return StringSeries.new(Column.read_text(filepath, delimiter)); + return StringSeries.new(Column.read_text(filepath, delimiter ?? '')); } /** diff --git a/modules/cudf/src/table/multibyte_split.cpp b/modules/cudf/src/table/multibyte_split.cpp deleted file mode 100644 index 5686236a9..000000000 --- a/modules/cudf/src/table/multibyte_split.cpp +++ /dev/null @@ -1,78 +0,0 @@ -// Copyright (c) 2021, NVIDIA CORPORATION. -// -// Licensed under the Apache License, Version 2.0 (the "License"); -// you may not use this file except in compliance with the License. -// You may obtain a copy of the License at -// -// http://www.apache.org/licenses/LICENSE-2.0 -// -// Unless required by applicable law or agreed to in writing, software -// distributed under the License is distributed on an "AS IS" BASIS, -// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. -// See the License for the specific language governing permissions and -// limitations under the License. - -#include -#include - -#include -#include -#include - -namespace nv { - -namespace { - -Column::wrapper_t split_string_column(Napi::CallbackInfo const& info, - cudf::mutable_column_view const& col, - std::string const& delimiter) { - auto env = info.Env(); - /* TODO: This only splits a string column. How to generalize */ - // Check type - auto span = cudf::device_span(col.child(1).data(), col.child(1).size()); - - auto datasource = cudf::io::text::device_span_data_chunk_source(span); - return Column::New(env, cudf::io::text::multibyte_split(datasource, delimiter)); -} - -Column::wrapper_t read_text_files(Napi::CallbackInfo const& info, - std::string const& filename, - std::string const& delimiter) { - auto datasource = cudf::io::text::make_source_from_file(filename); - auto text_data = cudf::io::text::multibyte_split(*datasource, delimiter); - auto env = info.Env(); - return Column::New(env, std::move(text_data)); -} - -} // namespace - -Napi::Value Column::split(Napi::CallbackInfo const& info) { - CallbackArgs args{info}; - - if (args.Length() != 1) { NAPI_THROW(Napi::Error::New(info.Env(), "split expects a delimiter")); } - - auto delimiter = args[0]; - auto col = this->mutable_view(); - try { - return split_string_column(info, col, delimiter); - } catch (cudf::logic_error const& err) { NAPI_THROW(Napi::Error::New(info.Env(), err.what())); } -} - -Napi::Value Column::read_text(Napi::CallbackInfo const& info) { - CallbackArgs args{info}; - - if (args.Length() != 2) { - NAPI_THROW( - Napi::Error::New(info.Env(), "read_text expects a filename and an optional delimiter")); - } - - auto source = args[0]; - auto delimiter = args[1]; - - try { - return read_text_files(info, source, delimiter); - - } catch (cudf::logic_error const& err) { NAPI_THROW(Napi::Error::New(info.Env(), err.what())); } -} - -} // namespace nv diff --git a/node-rapids.code-workspace b/node-rapids.code-workspace index 70a506b27..fe524288c 100644 --- a/node-rapids.code-workspace +++ b/node-rapids.code-workspace @@ -229,12 +229,7 @@ "**/.cmake-js/**": true, "**/node_modules/**": true }, - "typescript.tsdk": "node-rapids/node_modules/typescript/lib", - "workbench.colorCustomizations": { - "activityBar.background": "#193409", - "titleBar.activeBackground": "#23480C", - "titleBar.activeForeground": "#F5FCF0" - } + "typescript.tsdk": "node-rapids/node_modules/typescript/lib" }, "tasks": { "version": "2.0.0", diff --git a/package.json b/package.json index beb35dec6..230214168 100644 --- a/package.json +++ b/package.json @@ -90,7 +90,6 @@ "pre-git": "3.17.1", "rimraf": "3.0.0", "shx": "0.3.3", - "stream-json": "1.7.4", "typedoc": "0.22.10" }, "config": { From 0e5175c39aff629d42cbcaacc5ae8967b2e3e1c6 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Thu, 5 May 2022 14:27:02 -0500 Subject: [PATCH 08/68] Cleaning it up, and docs. --- modules/cudf/src/column.ts | 24 +++++++++++++++---- modules/cudf/src/data_frame.ts | 40 ------------------------------- modules/cudf/src/series.ts | 1 + modules/cudf/src/series/string.ts | 21 +++++++++++++--- yarn.lock | 12 ---------- 5 files changed, 38 insertions(+), 60 deletions(-) diff --git a/modules/cudf/src/column.ts b/modules/cudf/src/column.ts index ec1331829..ab2649883 100644 --- a/modules/cudf/src/column.ts +++ b/modules/cudf/src/column.ts @@ -125,11 +125,14 @@ export interface ColumnConstructor { memoryResource?: MemoryResource): Column; /** - * Fills a column with the Utf-8 string located at filepath. + * Fills a column with the Utf-8 string located at filepath. If a delimiter is included then + * the input string will be split into a sequence of strings. The delimiter will remain + * at the end of each string in the column, except for the last. If no delimiter is included, + * the input string will be read into a single string at element 0 of the Colum. * * @param filepath The location of the input file. * @param delimiter Optional delimiter. - * @returns column with a single large string. + * @returns column containing one or more strings. * * @note The maximum size of a string read with this method is 2^30 */ @@ -1472,10 +1475,21 @@ export interface Column { Column; /** - * Splits a string column. + * Splits a string column by delimiter. The delimiter string will remain at the end of each + * string in the split column. This method will completely change the string boundaries of a + * string column according to the delimiter: old boundaries will be removed and new boundaries + * will be introduced according to the delimiter. In addition, if used without a delimiter, + * the string column will be combined from n string values into a single value. * - * @param memoryResource The optional MemoryResource used to allocate the result Column's device - * memory. + * @example + * ```typescript + * let a = Series.new(['abcdefg', 'bcdefgh']); + * a.split('d'); + * [ 'abcd', 'efgbcd', 'efgh' ] + * a.split(''); + * [ 'abcdefgbcdefgh' ] + * ``` + * @param delimiter split along the delimiter. * @returns New strings column */ split(delimiter: string): Column; diff --git a/modules/cudf/src/data_frame.ts b/modules/cudf/src/data_frame.ts index aad8fc26b..f6891a4db 100644 --- a/modules/cudf/src/data_frame.ts +++ b/modules/cudf/src/data_frame.ts @@ -47,12 +47,6 @@ import {ColumnsMap, CommonType, TypeMap} from './types/mappings'; import {ReadORCOptions, WriteORCOptions} from './types/orc'; import {ReadParquetOptions, WriteParquetOptions} from './types/parquet'; -const fs = require('fs'); -const zlib = require('zlib'); -const {chain} = require('stream-chain'); -const {parser} = require('stream-json'); -const {streamObject} = require('stream-json/streamers/StreamObject'); - export type SeriesMap = { [P in keyof T]: {readonly type: T[P]} }; @@ -2121,38 +2115,4 @@ export class DataFrame { (map, name, i) => ({...map, [name]: this.__constructChild(name, table.getColumnByIndex(i))}), {} as SeriesMap)); } - - /** - * ``` - */ - public static hostReadJson(filepath: string): any { - /* - if (memory instanceof ArrayBuffer || ArrayBuffer.isView(memory)) { - memory = new Uint8Buffer(memory); - } - if (memory instanceof MemoryView) { memory = memory.buffer; } - */ - console.log('hello'); - const result: any[] = []; - (async () => { - try { - for await (const {value: row} of chain( - [fs.createReadStream(filepath), zlib.createGunzip(), parser(), streamObject()])) { - // for key in row: - // result[key].append(row[key]) - result.push(row.toString()); - } - } catch (e) { console.log('caught', e); } - })() - .then( - (msg: any) => { - console.log('done'); - console.log(msg); - }, - (err: any) => { - console.log('error'); - console.log(err); - }); - return result; - } } diff --git a/modules/cudf/src/series.ts b/modules/cudf/src/series.ts index b91903e72..e1ac84d9c 100644 --- a/modules/cudf/src/series.ts +++ b/modules/cudf/src/series.ts @@ -565,6 +565,7 @@ export class AbstractSeries { const step = new Scalar({type, value: opts.step ?? 1}) as Scalar; return Series.new(Column.sequence(opts.size, init, step, opts.memoryResource)); } + /** @ignore */ declare public _col: Column; diff --git a/modules/cudf/src/series/string.ts b/modules/cudf/src/series/string.ts index cc3a86505..67dc4a94d 100644 --- a/modules/cudf/src/series/string.ts +++ b/modules/cudf/src/series/string.ts @@ -444,7 +444,22 @@ export class StringSeries extends Series { zfill(width: number, memoryResource?: MemoryResource): Series { return this.__construct(this._col.zfill(width, memoryResource)); } - /* split + + /** + * Resplits a StringSeries along the delimiter. + * + * @note If delimiter is omitted, the default is ''. + * + * @param delimiter Optional delimiter. + * + * @returns Series with new splits determined by the delimiter. + * + * @example + * ```typescript + * import {Series} from '@rapidsai/cudf'; + * + * Series.read_text('./inputAsciiFile.txt') + * ``` */ split(delimiter: string): Series { return this.__construct(this._col.split(delimiter)); @@ -458,13 +473,13 @@ export class StringSeries extends Series { * @param filepath Path of the input file. * @param delimiter Optional delimiter. * - * @returns Series with the sequence + * @returns StringSeries from the file, split by delimiter * * @example * ```typescript * import {Series} from '@rapidsai/cudf'; * - * Series.read_text('./inputAsciiFile.txt') + * const infile = Series.read_text('./inputAsciiFile.txt') * ``` */ public static read_text(filepath: string, delimiter: string): Series { diff --git a/yarn.lock b/yarn.lock index 99c538ee0..af451ec82 100644 --- a/yarn.lock +++ b/yarn.lock @@ -13017,11 +13017,6 @@ stream-browserify@^2.0.1: inherits "~2.0.1" readable-stream "^2.0.2" -stream-chain@^2.2.5: - version "2.2.5" - resolved "https://registry.npmjs.org/stream-chain/-/stream-chain-2.2.5.tgz#b30967e8f14ee033c5b9a19bbe8a2cba90ba0d09" - integrity sha512-1TJmBx6aSWqZ4tx7aTpBDXK0/e2hhcNSTV8+CbFJtDjbb+I1mZ8lHit0Grw9GRT+6JbIrrDd8esncgBi8aBXGA== - stream-each@^1.1.0: version "1.2.3" resolved "https://registry.npmjs.org/stream-each/-/stream-each-1.2.3.tgz#ebe27a0c389b04fbcc233642952e10731afa9bae" @@ -13051,13 +13046,6 @@ stream-http@^2.7.2: to-arraybuffer "^1.0.0" xtend "^4.0.0" -stream-json@1.7.4: - version "1.7.4" - resolved "https://registry.npmjs.org/stream-json/-/stream-json-1.7.4.tgz#e41637f93c5aca7267009ca8a3f6751e62331e69" - integrity sha512-ja2dde1v7dOlx5/vmavn8kLrxvNfs7r2oNc5DYmNJzayDDdudyCSuTB1gFjH4XBVTIwxiMxL4i059HX+ZiouXg== - dependencies: - stream-chain "^2.2.5" - stream-parser@^0.3.1: version "0.3.1" resolved "https://registry.npmjs.org/stream-parser/-/stream-parser-0.3.1.tgz#1618548694420021a1182ff0af1911c129761773" From 1bd7fa8e01a0aa91ebe7784cfea232ef86e4aaac Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Thu, 5 May 2022 15:55:11 -0500 Subject: [PATCH 09/68] Move column tests to string tests. A couple of other small corrections. --- .../src/column/strings/multibyte_split.cpp | 77 +++++++++ modules/cudf/src/series/string.ts | 5 +- modules/cudf/test/cudf-column-tests.ts | 150 +----------------- modules/cudf/test/cudf-series-test.ts | 140 ++++++++++++++++ 4 files changed, 220 insertions(+), 152 deletions(-) create mode 100644 modules/cudf/src/column/strings/multibyte_split.cpp diff --git a/modules/cudf/src/column/strings/multibyte_split.cpp b/modules/cudf/src/column/strings/multibyte_split.cpp new file mode 100644 index 000000000..0d941d1be --- /dev/null +++ b/modules/cudf/src/column/strings/multibyte_split.cpp @@ -0,0 +1,77 @@ +// Copyright (c) 2021, NVIDIA CORPORATION. +// +// Licensed under the Apache License, Version 2.0 (the "License"); +// you may not use this file except in compliance with the License. +// You may obtain a copy of the License at +// +// http://www.apache.org/licenses/LICENSE-2.0 +// +// Unless required by applicable law or agreed to in writing, software +// distributed under the License is distributed on an "AS IS" BASIS, +// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +// See the License for the specific language governing permissions and +// limitations under the License. + +#include +#include +#include +#include +#include + +namespace nv { + +namespace { + +Column::wrapper_t split_string_column(Napi::CallbackInfo const& info, + cudf::mutable_column_view const& col, + std::string const& delimiter) { + auto env = info.Env(); + /* TODO: This only splits a string column. How to generalize */ + // Check type + auto span = cudf::device_span(col.child(1).data(), col.child(1).size()); + + auto datasource = cudf::io::text::device_span_data_chunk_source(span); + return Column::New(env, cudf::io::text::multibyte_split(datasource, delimiter)); +} + +Column::wrapper_t read_text_files(Napi::CallbackInfo const& info, + std::string const& filename, + std::string const& delimiter) { + auto datasource = cudf::io::text::make_source_from_file(filename); + auto text_data = cudf::io::text::multibyte_split(*datasource, delimiter); + auto env = info.Env(); + return Column::New(env, std::move(text_data)); +} + +} // namespace + +Napi::Value Column::split(Napi::CallbackInfo const& info) { + CallbackArgs args{info}; + + if (args.Length() != 1) { NAPI_THROW(Napi::Error::New(info.Env(), "split expects a delimiter")); } + + auto delimiter = args[0]; + auto col = this->mutable_view(); + try { + return split_string_column(info, col, delimiter); + } catch (cudf::logic_error const& err) { NAPI_THROW(Napi::Error::New(info.Env(), err.what())); } +} + +Napi::Value Column::read_text(Napi::CallbackInfo const& info) { + CallbackArgs args{info}; + + if (args.Length() != 2) { + NAPI_THROW( + Napi::Error::New(info.Env(), "read_text expects a filename and an optional delimiter")); + } + + auto source = args[0]; + auto delimiter = args[1]; + + try { + return read_text_files(info, source, delimiter); + + } catch (cudf::logic_error const& err) { NAPI_THROW(Napi::Error::New(info.Env(), err.what())); } +} + +} // namespace nv diff --git a/modules/cudf/src/series/string.ts b/modules/cudf/src/series/string.ts index 67dc4a94d..d892b78b4 100644 --- a/modules/cudf/src/series/string.ts +++ b/modules/cudf/src/series/string.ts @@ -509,9 +509,8 @@ export class StringSeries extends Series { * [...a.getJSONObject("$.foo").map(JSON.parse)] // object [{ bar: 'baz' }, { baz: 'bar' }] * ``` */ - public static getJSONObject(jsonPath: string, - memoryResource?: MemoryResource): Series { - return Series.new(this.getJSONObject(jsonPath, memoryResource)); + getJSONObject(jsonPath: string, memoryResource?: MemoryResource): Series { + return this.__construct(this._col.getJSONObject(jsonPath, memoryResource)); } /** diff --git a/modules/cudf/test/cudf-column-tests.ts b/modules/cudf/test/cudf-column-tests.ts index c712862fb..a388b07ea 100644 --- a/modules/cudf/test/cudf-column-tests.ts +++ b/modules/cudf/test/cudf-column-tests.ts @@ -19,162 +19,14 @@ import { setDefaultAllocator, Uint8Buffer } from '@rapidsai/cuda'; -import { - Bool8, - Column, - DataFrame, - DataType, - Float32, - Float64, - Int32, - Series, - SeriesMap, - StringSeries, - Uint8, - Utf8String -} from '@rapidsai/cudf'; +import {Bool8, Column, Float32, Float64, Int32, Series, Uint8, Utf8String} from '@rapidsai/cudf'; import {CudaMemoryResource, DeviceBuffer} from '@rapidsai/rmm'; import {BoolVector} from 'apache-arrow'; -import {promises} from 'fs'; -import * as Path from 'path'; - -/* TODO: How do I apply a list of dtypes? - */ -function json_aos_to_dataframe( - str: StringSeries, columns: ReadonlyArray, _: ReadonlyArray): DataFrame { - const arr = {} as SeriesMap; - columns.forEach((col, ix) => { - const no_open_list = str.split('[\n').gather([1], false); - const tokenized = no_open_list.split('},'); - console.log(tokenized.toArray()); - const parse_result = tokenized._col.getJSONObject('.' + columns[ix]); - arr[col] = Series.new(parse_result); - console.log(Series.new(parse_result).toArray()); - }); - const result = new DataFrame(arr); - return result; -} -/* TODO: How do I apply a list of dtypes? - */ -function json_aoa_to_dataframe(str: StringSeries, dtypes: ReadonlyArray): DataFrame { - const arr = {} as SeriesMap; - dtypes.forEach((_, ix) => { - const no_open_list = str.split('[\n').gather([1], false); - const tokenized = no_open_list.split('],'); - const get_ix = `[${ix}]`; - const parse_result = tokenized._col.getJSONObject(get_ix); - arr[ix] = Series.new(parse_result); - }); - const result = new DataFrame(arr); - return result; -} - -describe('Graphology dataset parsing', () => { - test('extracts four objects from the base object', () => { - const dataset = StringSeries.read_text('dataset_small.json.txt', ''); - let split = dataset.split('"tags":'); - const ttags = split.gather([1], false); - let rest = split.gather([0], false); - split = rest.split('"clusters":'); - const tclusters = split.gather([1], false); - rest = split.gather([0], false); - split = rest.split('"edges":'); - const tedges = split.gather([1], false); - rest = split.gather([0], false); - split = rest.split('"nodes":'); - const tnodes = split.gather([1], false); - const tags = json_aos_to_dataframe(ttags, ['key', 'image'], [new Utf8String, new Utf8String]); - const clusters = json_aos_to_dataframe( - tclusters, ['key', 'color', 'clusterLabel'], [new Int32, new Utf8String, new Utf8String]); - const nodes = - json_aos_to_dataframe(tnodes, ['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score'], [ - new Utf8String, - new Utf8String, - new Utf8String, - new Utf8String, - new Int32, - new Float64, - new Float64, - new Int32 - ]); - const edges = json_aoa_to_dataframe(tedges, [new Utf8String, new Utf8String]); - expect(nodes.names).toEqual(['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score']); - expect(nodes.numRows).toEqual(5); - expect(edges.numRows).toEqual(11); - expect(clusters.names).toEqual(['key', 'color', 'clusterLabel']); - expect(clusters.numRows).toEqual(24); - expect(tags.names).toEqual(['key', 'image']); - expect(tags.numRows).toEqual(11); - }); -}); - -describe('StringSeries.read_text', () => { - test('can read a json file', async () => { - const rows = [ - {a: 0, b: 1.0, c: '2'}, - {a: 1, b: 2.0, c: '3'}, - {a: 2, b: 3.0, c: '4'}, - ]; - const outputString = JSON.stringify(rows); - const path = Path.join(readTextTmpDir, 'simple.txt'); - await promises.writeFile(path, outputString); - const text = StringSeries.read_text(path, ''); - expect(text.getValue(0)).toEqual(outputString); - await new Promise((resolve, reject) => - rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); - }); - test('can read a random file', async () => { - const outputString = 'abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789!@#$%^&*()'; - const path = Path.join(readTextTmpDir, 'simple.txt'); - await promises.writeFile(path, outputString); - const text = StringSeries.read_text(path, ''); - expect(text.getValue(0)).toEqual(outputString); - await new Promise((resolve, reject) => - rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); - }); - test('can read an empty file', async () => { - const outputString = ''; - const path = Path.join(readTextTmpDir, 'simple.txt'); - await promises.writeFile(path, outputString); - const text = StringSeries.read_text(path, ''); - expect(text.getValue(0)).toEqual(outputString); - await new Promise((resolve, reject) => - rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); - }); -}); -let readTextTmpDir = ''; - -const rimraf = require('rimraf'); - -beforeAll(async () => { // - readTextTmpDir = await promises.mkdtemp(Path.join('/tmp', 'node_cudf')); -}); - -afterAll(() => { - return new Promise((resolve, reject) => { // - rimraf(readTextTmpDir, (err?: Error|null) => err ? reject(err) : resolve()); - }); -}); const mr = new CudaMemoryResource(); setDefaultAllocator((byteLength) => new DeviceBuffer(byteLength, mr)); -describe('Column split', () => { - test('split a basic string', () => { - const input = Series.new(['abcdefg']); - const example = Series.new(['abcd', 'efg']); - const result = Series.new(input._col.split('d')); - expect(result).toEqual(example); - }); - test('split a string twice', () => { - const input = Series.new(['abcdefgdcba']); - const example = Series.new(['abcd', 'efgd', 'cba']); - const result = Series.new(input._col.split('d')); - expect(result).toEqual(example); - }); -}); - test('Column initialization', () => { const length = 100; const col = new Column({type: new Int32, data: new Int32Buffer(length)}); diff --git a/modules/cudf/test/cudf-series-test.ts b/modules/cudf/test/cudf-series-test.ts index 17ece3557..4f3a10114 100644 --- a/modules/cudf/test/cudf-series-test.ts +++ b/modules/cudf/test/cudf-series-test.ts @@ -29,6 +29,8 @@ import { import { Bool8, Column, + DataFrame, + DataType, Float32, Float32Series, Float64, @@ -42,6 +44,8 @@ import { Int8, Int8Series, Series, + SeriesMap, + StringSeries, TimestampDay, TimestampMicrosecond, TimestampMillisecond, @@ -60,6 +64,8 @@ import { import {CudaMemoryResource, DeviceBuffer} from '@rapidsai/rmm'; import {Uint8Vector, Utf8Vector} from 'apache-arrow'; import {BoolVector} from 'apache-arrow'; +import {promises} from 'fs'; +import * as Path from 'path'; const mr = new CudaMemoryResource(); @@ -862,3 +868,137 @@ ${false} | ${false} | ${false} | ${[4, null, 1, 2, null, 3, 4]} | ${[1, 2, 3 const result = s.dropDuplicates(keep, nullsEqual, nullsFirst); expect([...result]).toEqual(expected); }); + +/* TODO: How do I apply a list of dtypes? + */ +function json_aos_to_dataframe( + str: StringSeries, columns: ReadonlyArray, _: ReadonlyArray): DataFrame { + const arr = {} as SeriesMap; + columns.forEach((col, ix) => { + const no_open_list = str.split('[\n').gather([1], false); + const tokenized = no_open_list.split('},'); + console.log(tokenized.toArray()); + const parse_result = tokenized._col.getJSONObject('.' + columns[ix]); + arr[col] = Series.new(parse_result); + console.log(Series.new(parse_result).toArray()); + }); + const result = new DataFrame(arr); + return result; +} +/* TODO: How do I apply a list of dtypes? + */ +function json_aoa_to_dataframe(str: StringSeries, dtypes: ReadonlyArray): DataFrame { + const arr = {} as SeriesMap; + dtypes.forEach((_, ix) => { + const no_open_list = str.split('[\n').gather([1], false); + const tokenized = no_open_list.split('],'); + const get_ix = `[${ix}]`; + const parse_result = tokenized._col.getJSONObject(get_ix); + arr[ix] = Series.new(parse_result); + }); + const result = new DataFrame(arr); + return result; +} + +describe('Graphology dataset parsing', () => { + test('extracts four objects from the base object', () => { + const dataset = StringSeries.read_text('dataset_small.json.txt', ''); + let split = dataset.split('"tags":'); + const ttags = split.gather([1], false); + let rest = split.gather([0], false); + split = rest.split('"clusters":'); + const tclusters = split.gather([1], false); + rest = split.gather([0], false); + split = rest.split('"edges":'); + const tedges = split.gather([1], false); + rest = split.gather([0], false); + split = rest.split('"nodes":'); + const tnodes = split.gather([1], false); + const tags = json_aos_to_dataframe(ttags, ['key', 'image'], [new Utf8String, new Utf8String]); + const clusters = json_aos_to_dataframe( + tclusters, ['key', 'color', 'clusterLabel'], [new Int32, new Utf8String, new Utf8String]); + const nodes = + json_aos_to_dataframe(tnodes, ['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score'], [ + new Utf8String, + new Utf8String, + new Utf8String, + new Utf8String, + new Int32, + new Float64, + new Float64, + new Int32 + ]); + const edges = json_aoa_to_dataframe(tedges, [new Utf8String, new Utf8String]); + expect(nodes.names).toEqual(['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score']); + expect(nodes.numRows).toEqual(5); + expect(edges.numRows).toEqual(11); + expect(clusters.names).toEqual(['key', 'color', 'clusterLabel']); + expect(clusters.numRows).toEqual(24); + expect(tags.names).toEqual(['key', 'image']); + expect(tags.numRows).toEqual(11); + }); +}); + +describe('StringSeries.read_text', () => { + test('can read a json file', async () => { + const rows = [ + {a: 0, b: 1.0, c: '2'}, + {a: 1, b: 2.0, c: '3'}, + {a: 2, b: 3.0, c: '4'}, + ]; + const outputString = JSON.stringify(rows); + const path = Path.join(readTextTmpDir, 'simple.txt'); + await promises.writeFile(path, outputString); + const text = StringSeries.read_text(path, ''); + expect(text.getValue(0)).toEqual(outputString); + await new Promise((resolve, reject) => + rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); + }); + test('can read a random file', async () => { + const outputString = 'abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789!@#$%^&*()'; + const path = Path.join(readTextTmpDir, 'simple.txt'); + await promises.writeFile(path, outputString); + const text = StringSeries.read_text(path, ''); + expect(text.getValue(0)).toEqual(outputString); + await new Promise((resolve, reject) => + rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); + }); + test('can read an empty file', async () => { + const outputString = ''; + const path = Path.join(readTextTmpDir, 'simple.txt'); + await promises.writeFile(path, outputString); + const text = StringSeries.read_text(path, ''); + expect(text.getValue(0)).toEqual(outputString); + await new Promise((resolve, reject) => + rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); + }); +}); + +describe('StringSeries split', () => { + test('split a basic string', () => { + const input = StringSeries.new(['abcdefg']); + const example = StringSeries.new(['abcd', 'efg']); + const result = StringSeries.new(input._col.split('d')); + expect(result).toEqual(example); + }); + test('split a string twice', () => { + const input = StringSeries.new(['abcdefgdcba']); + const example = StringSeries.new(['abcd', 'efgd', 'cba']); + const result = StringSeries.new(input._col.split('d')); + expect(result).toEqual(example); + }); +}); + +let readTextTmpDir = ''; + +const rimraf = require('rimraf'); + +beforeAll(async () => { // + readTextTmpDir = await promises.mkdtemp(Path.join('/tmp', 'node_cudf')); +}); + +afterAll(() => { + return new Promise((resolve, reject) => { // + rimraf(readTextTmpDir, (err?: Error|null) => err ? reject(err) : resolve()); + }); +}); From 628f2214e6c610a3d0359f281133af6c616b22d2 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Thu, 12 May 2022 17:09:31 -0500 Subject: [PATCH 10/68] Commit with sigma-server directory and rapids-api-server directories and working wireframes for them. --- modules/demo/rapids-api-server/.gitignore | 58 + modules/demo/rapids-api-server/README.md | 23 + modules/demo/rapids-api-server/app.js | 25 + modules/demo/rapids-api-server/package.json | 27 + .../demo/rapids-api-server/plugins/README.md | 16 + .../rapids-api-server/plugins/sensible.js | 14 + .../demo/rapids-api-server/plugins/support.js | 12 + .../demo/rapids-api-server/routes/README.md | 27 + .../rapids-api-server/routes/example/index.js | 7 + modules/demo/rapids-api-server/routes/root.js | 29 + modules/demo/rapids-api-server/test/helper.js | 35 + .../test/plugins/support.test.js | 26 + .../test/routes/example.test.js | 27 + .../test/routes/root.test.js | 27 + modules/demo/rapids-api-server/yarn.lock | 2388 ++ modules/demo/sigma-server/README.md | 34 + modules/demo/sigma-server/package-lock.json | 27377 ++++++++++++++++ modules/demo/sigma-server/package.json | 52 + .../sigma-server/public/dataset_full.json | 26304 +++++++++++++++ .../sigma-server/public/dataset_small.json | 105 + .../sigma-server/public/dataset_small.json.gz | Bin 0 -> 1138 bytes .../public/dataset_small.json.txt | 105 + modules/demo/sigma-server/public/favicon.ico | Bin 0 -> 15086 bytes .../sigma-server/public/images/charttype.svg | 59 + .../sigma-server/public/images/company.svg | 64 + .../sigma-server/public/images/concept.svg | 59 + .../demo/sigma-server/public/images/field.svg | 59 + .../demo/sigma-server/public/images/list.svg | 59 + .../sigma-server/public/images/method.svg | 59 + .../public/images/organization.svg | 59 + .../sigma-server/public/images/person.svg | 59 + .../sigma-server/public/images/technology.svg | 59 + .../demo/sigma-server/public/images/tool.svg | 68 + .../sigma-server/public/images/unknown.svg | 58 + modules/demo/sigma-server/public/index.html | 34 + modules/demo/sigma-server/src/canvas-utils.ts | 114 + modules/demo/sigma-server/src/index.tsx | 12 + .../demo/sigma-server/src/react-app-env.d.ts | 1 + modules/demo/sigma-server/src/styles.css | 335 + modules/demo/sigma-server/src/types.ts | 32 + modules/demo/sigma-server/src/use-debounce.ts | 27 + .../sigma-server/src/views/ClustersPanel.tsx | 112 + .../src/views/DescriptionPanel.tsx | 70 + .../src/views/GraphDataController.tsx | 62 + .../src/views/GraphEventsController.tsx | 42 + .../src/views/GraphSettingsController.tsx | 60 + .../sigma-server/src/views/GraphTitle.tsx | 47 + modules/demo/sigma-server/src/views/Panel.tsx | 37 + modules/demo/sigma-server/src/views/Root.tsx | 153 + .../sigma-server/src/views/SearchField.tsx | 102 + .../demo/sigma-server/src/views/TagsPanel.tsx | 115 + modules/demo/sigma-server/tsconfig.json | 26 + 52 files changed, 58761 insertions(+) create mode 100644 modules/demo/rapids-api-server/.gitignore create mode 100644 modules/demo/rapids-api-server/README.md create mode 100644 modules/demo/rapids-api-server/app.js create mode 100644 modules/demo/rapids-api-server/package.json create mode 100644 modules/demo/rapids-api-server/plugins/README.md create mode 100644 modules/demo/rapids-api-server/plugins/sensible.js create mode 100644 modules/demo/rapids-api-server/plugins/support.js create mode 100644 modules/demo/rapids-api-server/routes/README.md create mode 100644 modules/demo/rapids-api-server/routes/example/index.js create mode 100644 modules/demo/rapids-api-server/routes/root.js create mode 100644 modules/demo/rapids-api-server/test/helper.js create mode 100644 modules/demo/rapids-api-server/test/plugins/support.test.js create mode 100644 modules/demo/rapids-api-server/test/routes/example.test.js create mode 100644 modules/demo/rapids-api-server/test/routes/root.test.js create mode 100644 modules/demo/rapids-api-server/yarn.lock create mode 100644 modules/demo/sigma-server/README.md create mode 100644 modules/demo/sigma-server/package-lock.json create mode 100644 modules/demo/sigma-server/package.json create mode 100644 modules/demo/sigma-server/public/dataset_full.json create mode 100644 modules/demo/sigma-server/public/dataset_small.json create mode 100644 modules/demo/sigma-server/public/dataset_small.json.gz create mode 100644 modules/demo/sigma-server/public/dataset_small.json.txt create mode 100644 modules/demo/sigma-server/public/favicon.ico create mode 100644 modules/demo/sigma-server/public/images/charttype.svg create mode 100644 modules/demo/sigma-server/public/images/company.svg create mode 100644 modules/demo/sigma-server/public/images/concept.svg create mode 100644 modules/demo/sigma-server/public/images/field.svg create mode 100644 modules/demo/sigma-server/public/images/list.svg create mode 100644 modules/demo/sigma-server/public/images/method.svg create mode 100644 modules/demo/sigma-server/public/images/organization.svg create mode 100644 modules/demo/sigma-server/public/images/person.svg create mode 100644 modules/demo/sigma-server/public/images/technology.svg create mode 100644 modules/demo/sigma-server/public/images/tool.svg create mode 100644 modules/demo/sigma-server/public/images/unknown.svg create mode 100644 modules/demo/sigma-server/public/index.html create mode 100644 modules/demo/sigma-server/src/canvas-utils.ts create mode 100644 modules/demo/sigma-server/src/index.tsx create mode 100644 modules/demo/sigma-server/src/react-app-env.d.ts create mode 100644 modules/demo/sigma-server/src/styles.css create mode 100644 modules/demo/sigma-server/src/types.ts create mode 100644 modules/demo/sigma-server/src/use-debounce.ts create mode 100644 modules/demo/sigma-server/src/views/ClustersPanel.tsx create mode 100644 modules/demo/sigma-server/src/views/DescriptionPanel.tsx create mode 100644 modules/demo/sigma-server/src/views/GraphDataController.tsx create mode 100644 modules/demo/sigma-server/src/views/GraphEventsController.tsx create mode 100644 modules/demo/sigma-server/src/views/GraphSettingsController.tsx create mode 100644 modules/demo/sigma-server/src/views/GraphTitle.tsx create mode 100644 modules/demo/sigma-server/src/views/Panel.tsx create mode 100644 modules/demo/sigma-server/src/views/Root.tsx create mode 100644 modules/demo/sigma-server/src/views/SearchField.tsx create mode 100644 modules/demo/sigma-server/src/views/TagsPanel.tsx create mode 100644 modules/demo/sigma-server/tsconfig.json diff --git a/modules/demo/rapids-api-server/.gitignore b/modules/demo/rapids-api-server/.gitignore new file mode 100644 index 000000000..52962c254 --- /dev/null +++ b/modules/demo/rapids-api-server/.gitignore @@ -0,0 +1,58 @@ +# Logs +logs +*.log +npm-debug.log* + +# Runtime data +pids +*.pid +*.seed + +# Directory for instrumented libs generated by jscoverage/JSCover +lib-cov + +# Coverage directory used by tools like istanbul +coverage + +# nyc test coverage +.nyc_output + +# Grunt intermediate storage (http://gruntjs.com/creating-plugins#storing-task-files) +.grunt + +# node-waf configuration +.lock-wscript + +# Compiled binary addons (http://nodejs.org/api/addons.html) +build/Release + +# Dependency directories +node_modules +jspm_packages + +# Optional npm cache directory +.npm + +# Optional REPL history +.node_repl_history + +# 0x +profile-* + +# mac files +.DS_Store + +# vim swap files +*.swp + +# webstorm +.idea + +# vscode +.vscode +*code-workspace + +# clinic +profile* +*clinic* +*flamegraph* diff --git a/modules/demo/rapids-api-server/README.md b/modules/demo/rapids-api-server/README.md new file mode 100644 index 000000000..d3497b90f --- /dev/null +++ b/modules/demo/rapids-api-server/README.md @@ -0,0 +1,23 @@ +# Getting Started with Fastify-CLI [Fastify-CLI](https://www.npmjs.com/package/fastify-cli) +This project was bootstrapped with Fastify-CLI. + +## Available Scripts + +In the project directory, you can run: + +### `npm run dev` + +To start the app in dev mode.\ +Open [http://localhost:3000](http://localhost:3000) to view it in the browser. + +### `npm start` + +For production mode + +### `npm run test` + +Run the test cases. + +## Learn More + +To learn Fastify, check out the [Fastify documentation](https://www.fastify.io/docs/latest/). diff --git a/modules/demo/rapids-api-server/app.js b/modules/demo/rapids-api-server/app.js new file mode 100644 index 000000000..a01f327bd --- /dev/null +++ b/modules/demo/rapids-api-server/app.js @@ -0,0 +1,25 @@ +'use strict' + +const path = require('path') +const AutoLoad = require('@fastify/autoload') + +module.exports = async function (fastify, opts) { + // Place here your custom code! + + // Do not touch the following lines + + // This loads all plugins defined in plugins + // those should be support plugins that are reused + // through your application + fastify.register(AutoLoad, { + dir: path.join(__dirname, 'plugins'), + options: Object.assign({}, opts) + }) + + // This loads all plugins defined in routes + // define your routes in one of these + fastify.register(AutoLoad, { + dir: path.join(__dirname, 'routes'), + options: Object.assign({}, opts) + }) +} diff --git a/modules/demo/rapids-api-server/package.json b/modules/demo/rapids-api-server/package.json new file mode 100644 index 000000000..3347c5d94 --- /dev/null +++ b/modules/demo/rapids-api-server/package.json @@ -0,0 +1,27 @@ +{ + "name": "test", + "version": "1.0.0", + "description": "This project was bootstrapped with Fastify-CLI.", + "main": "app.js", + "directories": { + "test": "test" + }, + "scripts": { + "test": "tap \"test/**/*.test.js\"", + "start": "fastify start -l info app.js", + "dev": "fastify start -w -l info -P app.js" + }, + "keywords": [], + "author": "", + "license": "ISC", + "dependencies": { + "@fastify/autoload": "^4.0.0", + "@fastify/sensible": "^4.0.0", + "fastify": "^3.0.0", + "fastify-cli": "^3.0.1", + "fastify-plugin": "^3.0.0" + }, + "devDependencies": { + "tap": "^16.1.0" + } +} diff --git a/modules/demo/rapids-api-server/plugins/README.md b/modules/demo/rapids-api-server/plugins/README.md new file mode 100644 index 000000000..02fd5f930 --- /dev/null +++ b/modules/demo/rapids-api-server/plugins/README.md @@ -0,0 +1,16 @@ +# Plugins Folder + +Plugins define behavior that is common to all the routes in your +application. Authentication, caching, templates, and all the other cross +cutting concerns should be handled by plugins placed in this folder. + +Files in this folder are typically defined through the +[`fastify-plugin`](https://github.com/fastify/fastify-plugin) module, +making them non-encapsulated. They can define decorators and set hooks +that will then be used in the rest of your application. + +Check out: + +* [The hitchhiker's guide to plugins](https://www.fastify.io/docs/latest/Guides/Plugins-Guide/) +* [Fastify decorators](https://www.fastify.io/docs/latest/Reference/Decorators/). +* [Fastify lifecycle](https://www.fastify.io/docs/latest/Reference/Lifecycle/). diff --git a/modules/demo/rapids-api-server/plugins/sensible.js b/modules/demo/rapids-api-server/plugins/sensible.js new file mode 100644 index 000000000..a8d912e26 --- /dev/null +++ b/modules/demo/rapids-api-server/plugins/sensible.js @@ -0,0 +1,14 @@ +'use strict' + +const fp = require('fastify-plugin') + +/** + * This plugins adds some utilities to handle http errors + * + * @see https://github.com/fastify/fastify-sensible + */ +module.exports = fp(async function (fastify, opts) { + fastify.register(require('@fastify/sensible'), { + errorHandler: false + }) +}) diff --git a/modules/demo/rapids-api-server/plugins/support.js b/modules/demo/rapids-api-server/plugins/support.js new file mode 100644 index 000000000..b379ecc6b --- /dev/null +++ b/modules/demo/rapids-api-server/plugins/support.js @@ -0,0 +1,12 @@ +'use strict' + +const fp = require('fastify-plugin') + +// the use of fastify-plugin is required to be able +// to export the decorators to the outer scope + +module.exports = fp(async function (fastify, opts) { + fastify.decorate('someSupport', function () { + return 'hugs' + }) +}) diff --git a/modules/demo/rapids-api-server/routes/README.md b/modules/demo/rapids-api-server/routes/README.md new file mode 100644 index 000000000..4cd0dcba9 --- /dev/null +++ b/modules/demo/rapids-api-server/routes/README.md @@ -0,0 +1,27 @@ +# Routes Folder + +Routes define routes within your application. Fastify provides an +easy path to a microservice architecture, in the future you might want +to independently deploy some of those. + +In this folder you should define all the routes that define the endpoints +of your web application. +Each service is a [Fastify +plugin](https://www.fastify.io/docs/latest/Reference/Plugins/), it is +encapsulated (it can have its own independent plugins) and it is +typically stored in a file; be careful to group your routes logically, +e.g. all `/users` routes in a `users.js` file. We have added +a `root.js` file for you with a '/' root added. + +If a single file become too large, create a folder and add a `index.js` file there: +this file must be a Fastify plugin, and it will be loaded automatically +by the application. You can now add as many files as you want inside that folder. +In this way you can create complex routes within a single monolith, +and eventually extract them. + +If you need to share functionality between routes, place that +functionality into the `plugins` folder, and share it via +[decorators](https://www.fastify.io/docs/latest/Reference/Decorators/). + +If you're a bit confused about using `async/await` to write routes, you would +better take a look at [Promise resolution](https://www.fastify.io/docs/latest/Routes/#promise-resolution) for more details. diff --git a/modules/demo/rapids-api-server/routes/example/index.js b/modules/demo/rapids-api-server/routes/example/index.js new file mode 100644 index 000000000..cd2c47723 --- /dev/null +++ b/modules/demo/rapids-api-server/routes/example/index.js @@ -0,0 +1,7 @@ +'use strict' + +module.exports = async function (fastify, opts) { + fastify.get('/', async function (request, reply) { + return 'this is an example' + }) +} diff --git a/modules/demo/rapids-api-server/routes/root.js b/modules/demo/rapids-api-server/routes/root.js new file mode 100644 index 000000000..3827060ce --- /dev/null +++ b/modules/demo/rapids-api-server/routes/root.js @@ -0,0 +1,29 @@ +'use strict' + +const {Series} = require('@rapidsai/cudf'); + +module.exports = async function(fastify, opts) { + fastify.get('/', async function(request, reply) { + const x = Series.new([1, 2, 3]); + return { root: true, data: x.toArray() } + }); + fastify.get('/hello', async function(request, reply) { return 'hello'; }); + fastify.route({ + method: 'GET', + url: '/load-graphology-json', + schema: { + querystring: {filename: {type: 'string'}}, + + response: { + 200: { + type: 'object', + properties: + {success: {type: 'boolean'}, message: {type: 'string'}, params: {type: 'string'}} + } + } + }, + handler: async (request, reply) => { + return { 'params': request.query.filename, success: false, message: 'Not implemented.' } + } + }); +} diff --git a/modules/demo/rapids-api-server/test/helper.js b/modules/demo/rapids-api-server/test/helper.js new file mode 100644 index 000000000..d58c2b3d0 --- /dev/null +++ b/modules/demo/rapids-api-server/test/helper.js @@ -0,0 +1,35 @@ +'use strict' + +// This file contains code that we reuse +// between our tests. + +const { build: buildApplication } = require('fastify-cli/helper') +const path = require('path') +const AppPath = path.join(__dirname, '..', 'app.js') + +// Fill in this config with all the configurations +// needed for testing the application +function config () { + return {} +} + +// automatically build and tear down our instance +async function build (t) { + // you can set all the options supported by the fastify CLI command + const argv = [AppPath] + + // fastify-plugin ensures that all decorators + // are exposed for testing purposes, this is + // different from the production setup + const app = await buildApplication(argv, config()) + + // tear down our app after we are done + t.teardown(app.close.bind(app)) + + return app +} + +module.exports = { + config, + build +} diff --git a/modules/demo/rapids-api-server/test/plugins/support.test.js b/modules/demo/rapids-api-server/test/plugins/support.test.js new file mode 100644 index 000000000..0019787f7 --- /dev/null +++ b/modules/demo/rapids-api-server/test/plugins/support.test.js @@ -0,0 +1,26 @@ +'use strict' + +const { test } = require('tap') +const Fastify = require('fastify') +const Support = require('../../plugins/support') + +test('support works standalone', async (t) => { + const fastify = Fastify() + fastify.register(Support) + + await fastify.ready() + t.equal(fastify.someSupport(), 'hugs') +}) + +// You can also use plugin with opts in fastify v2 +// +// test('support works standalone', (t) => { +// t.plan(2) +// const fastify = Fastify() +// fastify.register(Support) +// +// fastify.ready((err) => { +// t.error(err) +// t.equal(fastify.someSupport(), 'hugs') +// }) +// }) diff --git a/modules/demo/rapids-api-server/test/routes/example.test.js b/modules/demo/rapids-api-server/test/routes/example.test.js new file mode 100644 index 000000000..11cb01a66 --- /dev/null +++ b/modules/demo/rapids-api-server/test/routes/example.test.js @@ -0,0 +1,27 @@ +'use strict' + +const { test } = require('tap') +const { build } = require('../helper') + +test('example is loaded', async (t) => { + const app = await build(t) + + const res = await app.inject({ + url: '/example' + }) + t.equal(res.payload, 'this is an example') +}) + +// inject callback style: +// +// test('example is loaded', (t) => { +// t.plan(2) +// const app = await build(t) +// +// app.inject({ +// url: '/example' +// }, (err, res) => { +// t.error(err) +// t.equal(res.payload, 'this is an example') +// }) +// }) diff --git a/modules/demo/rapids-api-server/test/routes/root.test.js b/modules/demo/rapids-api-server/test/routes/root.test.js new file mode 100644 index 000000000..f4d3b19b8 --- /dev/null +++ b/modules/demo/rapids-api-server/test/routes/root.test.js @@ -0,0 +1,27 @@ +'use strict' + +const { test } = require('tap') +const { build } = require('../helper') + +test('default root route', async (t) => { + const app = await build(t) + + const res = await app.inject({ + url: '/' + }) + t.same(JSON.parse(res.payload), { root: true }) +}) + +// inject callback style: +// +// test('default root route', (t) => { +// t.plan(2) +// const app = await build(t) +// +// app.inject({ +// url: '/' +// }, (err, res) => { +// t.error(err) +// t.same(JSON.parse(res.payload), { root: true }) +// }) +// }) diff --git a/modules/demo/rapids-api-server/yarn.lock b/modules/demo/rapids-api-server/yarn.lock new file mode 100644 index 000000000..615b4aae7 --- /dev/null +++ b/modules/demo/rapids-api-server/yarn.lock @@ -0,0 +1,2388 @@ +# THIS IS AN AUTOGENERATED FILE. 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It was bootstrapped with [Create React App](https://github.com/facebook/create-react-app) and uses [react-sigma-v2](https://github.com/sim51/react-sigma-v2) to interface sigma.js with React. + +## Dataset + +The dataset has been kindly crafted by the [Sciences-Po médialab](https://medialab.sciencespo.fr/) and [OuestWare](https://www.ouestware.com/en/) teams using [Seealsology](https://densitydesign.github.io/strumentalia-seealsology/). It represents a network of Wikipedia pages, connected by ["See also"](https://en.wikipedia.org/wiki/See_also) links. It then was tagged by hand. + +## Available Scripts + +In the project directory, you can run: + +### `npm start` + +Runs the app in the development mode.\ +Open [http://localhost:5000](http://localhost:5000) to view it in the browser. + +The page will reload if you make edits.\ +You will also see any lint errors in the console. + +### `npm test` + +Launches the test runner in the interactive watch mode.\ +See the section about [running tests](https://facebook.github.io/create-react-app/docs/running-tests) for more information. + +### `npm run build` + +Builds the app for production to the `build` folder.\ +It correctly bundles React in production mode and optimizes the build for the best performance. + +The build is minified and the filenames include the hashes.\ +Your app is ready to be deployed! + +See the section about [deployment](https://facebook.github.io/create-react-app/docs/deployment) for more information. diff --git a/modules/demo/sigma-server/package-lock.json 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["gephi", "yed"], + ["gephi", "networkx"], + ["gephi", "nodexl"], + ["gephi", "netminer"], + ["microsoft power bi", "power pivot"], + ["microsoft power bi", "microsoft excel"], + ["microsoft power bi", "sql server reporting services"], + ["qlik", "analytics"], + ["qlik", "business intelligence"], + ["qlik", "data integration"], + ["qlik", "microsoft power bi"], + ["venn diagram", "existential graph"], + ["venn diagram", "charles sanders peirce"], + ["venn diagram", "logical connectives"], + ["venn diagram", "marquand diagram"], + ["venn diagram", "veitch chart"], + ["venn diagram", "karnaugh map"], + ["venn diagram", "octahedron"], + ["venn diagram", "three circles model"], + ["venn diagram", "triquetra"], + ["venn diagram", "vesica piscis"], + ["radar chart", "plot (graphics)"], + ["radar chart", "parallel coordinates"], + ["flowchart", "activity diagram"], + ["flowchart", "control-flow diagram"], + ["flowchart", "control-flow graph"], + ["flowchart", "data flow diagram"], + ["flowchart", "deployment flowchart"], + ["flowchart", "drakon"], + ["flowchart", "flow map"], + ["flowchart", "functional flow block diagram"], + ["flowchart", "nassi–shneiderman diagram"], + ["flowchart", "state diagram"], + ["flowchart", "warnier/orr diagram"], + ["flowchart", "why-because analysis"], + ["flowchart", "augmented transition network"], + ["flowchart", "business process mapping"], + ["flowchart", "process architecture"], + ["flowchart", "pseudocode"], + ["flowchart", "recursive transition network"], + ["flowchart", "unified modeling language"], + ["flowchart", "workflow"], + ["box plot", "bagplot"], + ["box plot", "exploratory data analysis"], + ["box plot", "fan chart (statistics)"], + ["box plot", "five-number summary"], + ["box plot", "functional boxplot"], + ["box plot", "seven-number summary"], + ["treemap", "information visualization"], + ["line chart", "run chart"], + ["line chart", "curve fitting"], + ["network chart", "bar chart"], + ["network chart", "float (project management)"], + ["network chart", "gantt chart"], + ["network chart", "project management"], + ["network chart", "project planning"], + ["network chart", "program evaluation and review technique"], + ["pareto chart", "control chart"], + ["pareto chart", "histogram"], + ["pareto chart", "cumulative distribution function"], + ["pareto chart", "pareto analysis"], + ["pareto chart", "pareto principle"], + ["pareto chart", "statistical quality control"], + ["control chart", "analytic and enumerative statistical studies"], + ["control chart", "common cause and special cause"], + ["control chart", "distribution-free control chart"], + ["control chart", "w. edwards deming"], + ["control chart", "process capability"], + ["control chart", "seven basic tools of quality"], + ["control chart", "six sigma"], + ["control chart", "statistical process control"], + ["control chart", "total quality management"], + ["scatter plot", "bar graph"], + ["scatter plot", "line chart"], + ["histogram", "data binning"], + ["histogram", "density estimation"], + ["histogram", "kernel density estimation"], + ["histogram", "image histogram"], + ["histogram", "pareto chart"], + ["histogram", "seven basic tools of quality"], + ["bar chart", "mw:extension:easytimeline"], + ["bar chart", "enhanced metafile format"], + ["bar chart", "ms powerpoint"], + ["bar chart", "histogram"], + ["bar chart", "misleading graph"], + ["table (information)", "chart"], + ["table (information)", "diagram"], + ["table (information)", "abstract data type"], + ["table (information)", "column (database)"], + ["table (information)", "information graphics"], + ["table (information)", "row (database)"], + ["table (information)", "table (database)"], + ["table (information)", "html element"], + ["table (information)", "tensor"], + ["table (information)", "dependent and independent variables"], + ["mosaic plot", "heat map"], + ["mosaic plot", "treemap"], + ["mosaic plot", "contingency table"], + ["tree structure", "b-tree"], + ["tree structure", "decision tree"], + ["tree structure", "tree (data structure)"], + ["tree structure", "tree (graph theory)"], + ["tree structure", "tree (set theory)"], + ["tree structure", "data drilling"], + ["tree structure", "hierarchical model"], + ["tree structure", "hierarchical clustering"], + ["tree structure", "hierarchical query"], + ["tree structure", "tree testing"], + ["topic maps", "semantic interoperability"], + ["topic maps", "topincs"], + ["topic maps", "unified modeling language"], + ["semantic network", "abstract semantic graph"], + ["semantic network", "chunking (psychology)"], + ["semantic network", "cmaptools"], + ["semantic network", "concept map"], + ["semantic network", "network diagram"], + ["semantic network", "ontology (information science)"], + ["semantic network", "repertory grid"], + ["semantic network", "semantic lexicon"], + ["semantic network", "semantic similarity network"], + ["semantic network", "semantic neural network"], + ["semantic network", "semeval"], + ["semantic network", "semantic analysis (computational)"], + ["semantic network", "sparse distributed memory"], + ["semantic network", "taxonomy (general)"], + ["semantic network", "unified medical language system"], + ["semantic network", "resource description framework"], + ["semantic network", "cognition network technology"], + ["semantic network", "lexipedia"], + ["semantic network", "opencog"], + ["semantic network", "open mind common sense"], + ["semantic network", "schema.org"], + ["semantic network", "snomed ct"], + ["semantic network", "universal networking language"], + ["semantic network", "wikidata"], + ["semantic network", "freebase (database)"], + ["sociogram", "social network analysis software"], + ["sociogram", "corporate interlocks"], + ["sociogram", "diagram"], + ["sociogram", "network science"], + ["sociogram", "organizational chart"], + ["sociogram", "social balance theory"], + ["sociogram", "sociomapping"], + ["sociogram", "sociometry"], + ["object-role modeling", "concept map"], + ["object-role modeling", "conceptual schema"], + ["object-role modeling", "information flow diagram"], + ["object-role modeling", "ontology double articulation"], + ["object-role modeling", "ontology engineering"], + ["object-role modeling", "relational algebra"], + ["object-role modeling", "three schema approach"], + ["mind map", "exquisite corpse"], + ["mind map", "graph (discrete mathematics)"], + ["mind map", "idea"], + ["mind map", "mental literacy"], + ["mind map", "nodal organizational structure"], + ["mind map", "personal wiki"], + ["mind map", "rhizome (philosophy)"], + ["mind map", "social map"], + ["mind map", "spider mapping"], + ["issue tree", "five whys"], + ["issue tree", "horizon scanning"], + ["issue tree", "ishikawa diagram"], + ["issue tree", "root cause analysis"], + ["issue tree", "why–because analysis"], + ["issue-based information system", "collaborative software"], + ["issue-based information system", "computational sociology"], + ["issue-based information system", "creative problem solving"], + ["issue-based information system", "critical thinking"], + ["issue-based information system", "deliberation"], + ["issue-based information system", "dialogue"], + ["issue-based information system", "issue tree"], + ["issue-based information system", "knowledge base"], + ["issue-based information system", "personal knowledge base"], + ["issue-based information system", "socratic questioning"], + ["issue-based information system", "why–because analysis"], + ["dendrogram", "cladogram"], + ["dendrogram", "distance matrices in phylogeny"], + ["dendrogram", "hierarchical clustering"], + ["dendrogram", "freeware"], + ["dendrogram", "yed"], + ["hyperbolic tree", "hyperbolic geometry"], + ["hyperbolic tree", "binary tiling"], + ["hyperbolic tree", "information visualization"], + ["hyperbolic tree", "tree (data structure)"], + ["hyperbolic tree", "tree (graph theory)"], + ["decision tree", "behavior tree (artificial intelligence, robotics and control)"], + ["decision tree", "boosting (machine learning)"], + ["decision tree", "decision cycle"], + ["decision tree", "decision list"], + ["decision tree", "decision table"], + ["decision tree", "decision tree model"], + ["decision tree", "design rationale"], + ["decision tree", "drakon"], + ["decision tree", "markov chain"], + ["decision tree", "random forest"], + ["decision tree", "odds algorithm"], + ["decision tree", "topological combinatorics"], + ["decision tree", "truth table"], + ["conceptual graph", "alphabet of human thought"], + ["conceptual graph", "chunking (psychology)"], + ["conceptual graph", "resource description framework"], + ["conceptual graph", "sparql"], + ["conceptual graph", "semantic network"], + ["cognitive map", "cognitive geography"], + ["cognitive map", "fuzzy cognitive map"], + ["cognitive map", "motion perception"], + ["cognitive map", "repertory grid"], + ["cognitive map", "mind map"], + ["cladistics", "bioinformatics"], + ["cladistics", "biomathematics"], + ["cladistics", "coalescent theory"], + ["cladistics", "common descent"], + ["cladistics", "glossary of scientific naming"], + ["cladistics", "language family"], + ["cladistics", "phylogenetic network"], + ["cladistics", "scientific classification"], + ["cladistics", "subclade"], + ["cladistics", "systematics"], + ["cladistics", "three-taxon analysis"], + ["cladistics", "tree model"], + ["cladistics", "tree structure"], + ["argument map", "argument technology"], + ["argument map", "argumentation framework"], + ["argument map", "argumentation scheme"], + ["argument map", "bayesian network"], + ["argument map", "dialogue mapping"], + ["argument map", "flow (policy debate)"], + ["argument map", "informal fallacy"], + ["argument map", "logic and dialectic"], + ["argument map", "logic of argumentation"], + ["argument map", "natural deduction"], + ["argument map", "practical arguments"], + ["argument map", "rhetorical structure theory"], + ["argument map", "semantic tableau"], + ["argumentation framework", "argument map"], + ["argumentation framework", "argumentation theory"], + ["argumentation framework", "defeater"], + ["argumentation framework", "diagrammatic reasoning"], + ["argumentation framework", "dialogical logic"], + ["argumentation framework", "logic and dialectic"], + ["argumentation framework", "logic of argumentation"], + ["argumentation framework", "knowledge representation and reasoning"], + ["argumentation framework", "paraconsistent logic"], + ["argumentation scheme", "decisional balance"], + ["argumentation scheme", "design pattern"], + ["argumentation scheme", "heuristic"], + ["argumentation scheme", "pattern language"], + ["argumentation scheme", "pedagogical pattern"], + ["argumentation scheme", "rule of thumb"], + ["bayesian network", "bayesian epistemology"], + ["bayesian network", "bayesian programming"], + ["bayesian network", "causal inference"], + ["bayesian network", "causal loop diagram"], + ["bayesian network", "chow–liu tree"], + ["bayesian network", "computational intelligence"], + ["bayesian network", "computational phylogenetics"], + ["bayesian network", "deep belief network"], + ["bayesian network", "dempster–shafer theory"], + ["bayesian network", "expectation–maximization algorithm"], + ["bayesian network", "factor graph"], + ["bayesian network", "hierarchical temporal memory"], + ["bayesian network", "kalman filter"], + ["bayesian network", "memory-prediction framework"], + ["bayesian network", "mixture distribution"], + ["bayesian network", "mixture model"], + ["bayesian network", "naive bayes classifier"], + ["bayesian network", "polytree"], + ["bayesian network", "sensor fusion"], + ["bayesian network", "sequence alignment"], + ["bayesian network", "structural equation modeling"], + ["bayesian network", "subjective logic"], + ["bayesian network", "variable-order bayesian network"], + ["dialogue mapping", "collaborative software"], + ["dialogue mapping", "computational sociology"], + ["dialogue mapping", "creative problem solving"], + ["dialogue mapping", "critical thinking"], + ["dialogue mapping", "deliberation"], + ["dialogue mapping", "dialogue"], + ["dialogue mapping", "issue tree"], + ["dialogue mapping", "knowledge base"], + ["dialogue mapping", "personal knowledge base"], + ["dialogue mapping", "socratic questioning"], + ["dialogue mapping", "why–because analysis"], + ["flow (policy debate)", "argument map"], + ["informal fallacy", "fallacy"], + ["informal fallacy", "formal fallacy"], + ["logic and dialectic", "argumentation framework"], + ["logic and dialectic", "argumentation theory"], + ["logic and dialectic", "logic of argumentation"], + ["logic and dialectic", "thesis, antithesis, synthesis"], + ["logic of argumentation", "argumentation framework"], + ["logic of argumentation", "argumentation theory"], + ["logic of argumentation", "logic and dialectic"], + ["natural deduction", "mathematical logic"], + ["natural deduction", "sequent calculus"], + ["natural deduction", "gerhard gentzen"], + ["natural deduction", "system l"], + ["natural deduction", "argument map"], + ["practical arguments", "argument map"], + ["practical arguments", "argumentation framework"], + ["practical arguments", "logical argument"], + ["practical arguments", "toulmin model of argument"], + ["rhetorical structure theory", "argument mining"], + ["rhetorical structure theory", "parse tree"], + ["semantic tableau", "resolution (logic)"], + ["bioinformatics", "biodiversity informatics"], + ["bioinformatics", "bioinformatics companies"], + ["bioinformatics", "computational biology"], + ["bioinformatics", "computational biomodeling"], + ["bioinformatics", "computational genomics"], + ["bioinformatics", "functional genomics"], + ["bioinformatics", "health informatics"], + ["bioinformatics", "international society for computational biology"], + ["bioinformatics", "jumping library"], + ["bioinformatics", "metabolomics"], + ["bioinformatics", "nucleic acid sequence"], + ["bioinformatics", "phylogenetics"], + ["bioinformatics", "proteomics"], + ["bioinformatics", "gene disease database"], + ["biomathematics", "biological applications of bifurcation theory"], + ["biomathematics", "biostatistics"], + ["biomathematics", "entropy and life"], + ["biomathematics", "ewens's sampling formula"], + ["biomathematics", "logistic function"], + ["biomathematics", "mathematical modelling of infectious disease"], + ["biomathematics", "metabolic network modelling"], + ["biomathematics", "molecular modelling"], + ["biomathematics", "morphometrics"], + ["biomathematics", "population genetics"], + ["biomathematics", "theoretical ecology"], + ["biomathematics", "turing pattern"], + ["common descent", "the ancestor's tale"], + ["glossary of scientific naming", "alpha taxonomy"], + ["glossary of scientific naming", "cladistics"], + ["glossary of scientific naming", "glossary of botanical terms"], + ["glossary of scientific naming", "species description"], + ["language family", "constructed language"], + ["language family", "endangered language"], + ["language family", "extinct language"], + ["language family", "language death"], + ["language family", "global language system"], + ["language family", "origin of language"], + ["language family", "proto-language (historical linguistics)"], + ["language family", "proto-human language"], + ["language family", "tree model"], + ["language family", "unclassified language"], + ["language family", "father tongue hypothesis"], + ["scientific classification", "automated species identification"], + ["scientific classification", "bacterial taxonomy"], + ["scientific classification", "cladogram"], + ["scientific classification", "cladistics"], + ["scientific classification", "cluster analysis"], + ["scientific classification", "consortium for the barcode of life"], + ["scientific classification", "consortium of european taxonomic facilities"], + ["scientific classification", "dendrogram"], + ["scientific classification", "genetypes"], + ["scientific classification", "glossary of scientific naming"], + ["scientific classification", "identification (biology)"], + ["scientific classification", "incertae sedis"], + ["scientific classification", "open tree of life"], + ["scientific classification", "parataxonomy"], + ["scientific classification", "phenogram"], + ["scientific classification", "set theory"], + ["scientific classification", "taxonomy (general)"], + ["scientific classification", "virus classification"], + ["subclade", "clade"], + ["subclade", "cladistics"], + ["subclade", "haplotype"], + ["systematics", "taxonomy (biology)"], + ["systematics", "cladistics"], + ["systematics", "methodology"], + ["systematics", "global biodiversity"], + ["systematics", "phenetics"], + ["systematics", "phylogeny"], + ["systematics", "phylogenetic comparative methods"], + ["systematics", "biodiversity"], + ["systematics", "scientific classification"], + ["three-taxon analysis", "cladistics"], + ["tree model", "comparative method"], + ["tree model", "evolutionary linguistics"], + ["tree model", "genetic relationship (linguistics)"], + ["tree model", "indo-european studies"], + ["tree model", "language family"], + ["tree model", "linkage (linguistics)"], + ["tree model", "wave model (linguistics)"], + ["tree model", "father tongue hypothesis"], + ["cognitive geography", "behavioral geography"], + ["cognitive geography", "cognitive psychology"], + ["cognitive geography", "spatial cognition"], + ["cognitive geography", "geovisualization"], + ["cognitive geography", "wayfinding"], + ["fuzzy cognitive map", "causal diagram"], + ["fuzzy cognitive map", "causal loop diagram"], + ["fuzzy cognitive map", "system dynamics"], + ["fuzzy cognitive map", "cognitive map"], + ["motion perception", "biological motion"], + ["motion perception", "cognitive map"], + ["motion perception", "eye movement (sensory)"], + ["motion perception", "illusory motion"], + ["motion perception", "induced movement"], + ["motion perception", "jerkiness"], + ["motion perception", "lilac chaser"], + ["motion perception", "max wertheimer"], + ["motion perception", "motion aftereffect"], + ["motion perception", "motion (physics)"], + ["motion perception", "motion sensing in vision"], + ["motion perception", "optical flow"], + ["motion perception", "peripheral drift illusion"], + ["motion perception", "persistence of vision"], + ["motion perception", "pulfrich effect"], + ["motion perception", "strobe light"], + ["motion perception", "stroboscopic effect"], + ["motion perception", "visual modularity"], + ["motion perception", "visual perception"], + ["motion perception", "wagon-wheel effect"], + ["repertory grid", "graph (abstract data type)"], + ["repertory grid", "idea networking"], + ["repertory grid", "implicit relational assessment procedure"], + ["repertory grid", "knowledge representation and reasoning"], + ["repertory grid", "q methodology"], + ["repertory grid", "tree (data structure)"], + ["alphabet of human thought", "algebraic logic"], + ["alphabet of human thought", "language of thought hypothesis"], + ["alphabet of human thought", "natural semantic metalanguage"], + ["alphabet of human thought", "philosophical language"], + ["alphabet of human thought", "upper ontology"], + ["chunking (psychology)", "language acquisition"], + ["chunking (psychology)", "conceptual graph"], + ["chunking (psychology)", "flow (psychology)"], + ["chunking (psychology)", "forgetting curve"], + ["chunking (psychology)", "generalization (learning)"], + ["chunking (psychology)", "knowledge representation and reasoning"], + ["chunking (psychology)", "memory"], + ["chunking (psychology)", "merge (linguistics)"], + ["chunking (psychology)", "method of loci"], + ["chunking (psychology)", "mnemonic"], + ["resource description framework", "rdfa"], + ["resource description framework", "json-ld"], + ["resource description framework", "notation3"], + ["resource description framework", "entity–attribute–value model"], + ["resource description framework", "graph theory"], + ["resource description framework", "tag (metadata)"], + ["resource description framework", "scicrunch"], + ["resource description framework", "semantic network"], + ["resource description framework", "semantic technology"], + ["resource description framework", "associative model of data"], + ["resource description framework", "business intelligence 2.0"], + ["resource description framework", "data portability"], + ["resource description framework", "folksonomy"], + ["resource description framework", "lsid"], + ["resource description framework", "swoogle"], + ["resource description framework", "universal networking language"], + ["resource description framework", "void"], + ["sparql", "sparql query results xml format"], + ["sparql", "wikidata"], + ["abstract semantic graph", "abstract syntax tree"], + ["abstract semantic graph", "ontology (computer science)"], + ["abstract semantic graph", "semantic web"], + ["abstract semantic graph", "semantic grid"], + ["ontology (information science)", "commonsense knowledge bases"], + ["ontology (information science)", "concept map"], + ["ontology (information science)", "controlled vocabulary"], + ["ontology (information science)", "classification scheme (information science)"], + ["ontology (information science)", "folksonomy"], + ["ontology (information science)", "formal concept analysis"], + ["ontology (information science)", "formal ontology"], + ["ontology (information science)", "knowledge graph"], + ["ontology (information science)", "lattice (order)"], + ["ontology (information science)", "ontology"], + ["ontology (information science)", "ontology alignment"], + ["ontology (information science)", "ontology chart"], + ["ontology (information science)", "open semantic framework"], + ["ontology (information science)", "semantic technology"], + ["ontology (information science)", "soft ontology"], + ["ontology (information science)", "terminology extraction"], + ["ontology (information science)", "weak ontology"], + ["ontology (information science)", "web ontology language"], + ["ontology (information science)", "alphabet of human thought"], + ["ontology (information science)", "characteristica universalis"], + ["ontology (information science)", "interoperability"], + ["ontology (information science)", "metalanguage"], + ["ontology (information science)", "natural semantic metalanguage"], + ["semantic lexicon", "gellish"], + ["semantic lexicon", "lexicon"], + ["semantic lexicon", "semantic network"], + ["semeval", "computational semantics"], + ["semeval", "natural language processing"], + ["semeval", "word sense"], + ["semeval", "semantic analysis (computational)"], + ["semantic analysis (computational)", "computational semantics"], + ["semantic analysis (computational)", "natural language processing"], + ["semantic analysis (computational)", "semantic analytics"], + ["semantic analysis (computational)", "semantic analysis (machine learning)"], + ["semantic analysis (computational)", "semantic web"], + ["semantic analysis (computational)", "semeval"], + ["taxonomy (general)", "categorization"], + ["taxonomy (general)", "classification (general theory)"], + ["taxonomy (general)", "celestial emporium of benevolent recognition"], + ["taxonomy (general)", "conflation"], + ["taxonomy (general)", "folksonomy"], + ["taxonomy (general)", "hypernym"], + ["taxonomy (general)", "knowledge representation"], + ["taxonomy (general)", "lexicon"], + ["taxonomy (general)", "ontology (information science)"], + ["taxonomy (general)", "philosophical language"], + ["taxonomy (general)", "protégé (software)"], + ["taxonomy (general)", "semantic network"], + ["taxonomy (general)", "semantic similarity network"], + ["taxonomy (general)", "structuralism"], + ["taxonomy (general)", "systematics"], + ["taxonomy (general)", "taxon"], + ["taxonomy (general)", "taxonomy for search engines"], + ["taxonomy (general)", "thesaurus (information retrieval)"], + ["unified medical language system", "medical classification"], + ["opencog", "soar (cognitive architecture)"], + ["opencog", "cyc"], + ["opencog", "openai"], + ["open mind common sense", "attempto controlled english"], + ["open mind common sense", "never-ending language learning"], + ["open mind common sense", "mindpixel"], + ["open mind common sense", "thoughttreasure"], + ["open mind common sense", "semantic web"], + ["open mind common sense", "dbpedia"], + ["open mind common sense", "freebase (database)"], + ["open mind common sense", "yago (database)"], + ["snomed ct", "clinical data interchange standards consortium"], + ["snomed ct", "clinical care classification system"], + ["snomed ct", "docle"], + ["snomed ct", "en 13606"], + ["snomed ct", "medcin"], + ["snomed ct", "meddra"], + ["snomed ct", "omaha system"], + ["snomed ct", "foundational model of anatomy"], + ["universal networking language", "semantic network"], + ["universal networking language", "abstract semantic graph"], + ["universal networking language", "semantic translation"], + ["universal networking language", "semantic unification"], + ["wikidata", "babelnet"], + ["wikidata", "dbpedia"], + ["wikidata", "freebase (database)"], + ["wikidata", "semantic mediawiki"], + ["freebase (database)", "babelnet"], + ["freebase (database)", "cyc"], + ["freebase (database)", "dbpedia"], + ["freebase (database)", "entity–relationship model"], + ["freebase (database)", "true knowledge"], + ["freebase (database)", "yago (database)"], + ["freebase (database)", "knowledge vault"], + ["freebase (database)", "wikidata"], + ["sparql query results xml format", "sparql"], + ["rdfa", "microformat"], + ["rdfa", "microdata (html)"], + ["rdfa", "xml"], + ["rdfa", "schema.org"], + ["entity–attribute–value model", "attribute-value system"], + ["entity–attribute–value model", "linked data"], + ["entity–attribute–value model", "resource description framework"], + ["entity–attribute–value model", "semantic web"], + ["entity–attribute–value model", "triplestore"], + ["entity–attribute–value model", "slowly changing dimension"], + ["graph theory", "gallery of named graphs"], + ["graph theory", "glossary of graph theory"], + ["graph theory", "algebraic graph theory"], + ["graph theory", "citation graph"], + ["graph theory", "conceptual graph"], + ["graph theory", "data structure"], + ["graph theory", "dual-phase evolution"], + ["graph theory", "entitative graph"], + ["graph theory", "existential graph"], + ["graph theory", "graph algebra"], + ["graph theory", "graph automorphism"], + ["graph theory", "graph coloring"], + ["graph theory", "graph database"], + ["graph theory", "graph (data structure)"], + ["graph theory", "graph drawing"], + ["graph theory", "graph rewriting"], + ["graph theory", "graph property"], + ["graph theory", "intersection graph"], + ["graph theory", "knight's tour"], + ["graph theory", "logical graph"], + ["graph theory", "loop (graph theory)"], + ["graph theory", "network theory"], + ["graph theory", "null graph"], + ["graph theory", "percolation"], + ["graph theory", "quantum graph"], + ["graph theory", "semantic networks"], + ["graph theory", "spectral graph theory"], + ["graph theory", "strongly regular graph"], + ["graph theory", "symmetric graph"], + ["graph theory", "transitive reduction"], + ["graph theory", "tree (data structure)"], + ["graph theory", "bellman–ford algorithm"], + ["graph theory", "borůvka's algorithm"], + ["graph theory", "breadth-first search"], + ["graph theory", "depth-first search"], + ["graph theory", "dijkstra's algorithm"], + ["graph theory", "edmonds–karp algorithm"], + ["graph theory", "floyd–warshall algorithm"], + ["graph theory", "ford–fulkerson algorithm"], + ["graph theory", "hopcroft–karp algorithm"], + ["graph theory", "hungarian algorithm"], + ["graph theory", "kruskal's algorithm"], + ["graph theory", "prim's algorithm"], + ["graph theory", "tarjan's strongly connected components algorithm"], + ["graph theory", "topological sorting"], + ["graph theory", "geometric graph theory"], + ["graph theory", "extremal graph theory"], + ["graph theory", "random graph"], + ["graph theory", "topological graph theory"], + ["graph theory", "combinatorics"], + ["graph theory", "group theory"], + ["graph theory", "knot theory"], + ["graph theory", "ramsey theory"], + ["graph theory", "hypergraph"], + ["graph theory", "abstract simplicial complex"], + ["graph theory", "noga alon"], + ["graph theory", "john adrian bondy"], + ["graph theory", "gabriel andrew dirac"], + ["graph theory", "paul erdős"], + ["graph theory", "percy john heawood"], + ["graph theory", "anton kotzig"], + ["graph theory", "dénes kőnig"], + ["graph theory", "lászló lovász"], + ["graph theory", "paul seymour (mathematician)"], + ["graph theory", "w. t. tutte"], + ["graph theory", "hassler whitney"], + ["tag (metadata)", "collective intelligence"], + ["tag (metadata)", "concept map"], + ["tag (metadata)", "enterprise bookmarking"], + ["tag (metadata)", "expert system"], + ["tag (metadata)", "human–computer interaction"], + ["tag (metadata)", "knowledge transfer"], + ["tag (metadata)", "management information system"], + ["tag (metadata)", "semantic web"], + ["tag (metadata)", "subject indexing"], + ["scicrunch", "lsid"], + ["scicrunch", "resource description framework"], + ["scicrunch", "tag (metadata)"], + ["semantic technology", "knowledge graph"], + ["semantic technology", "metadata"], + ["semantic technology", "ontology (information science)"], + ["semantic technology", "resource description framework"], + ["semantic technology", "schema.org"], + ["semantic technology", "semantic heterogeneity"], + ["semantic technology", "semantic integration"], + ["semantic technology", "semantic matching"], + ["semantic technology", "semantic web"], + ["semantic technology", "web ontology language"], + ["associative model of data", "topic maps"], + ["associative model of data", "triplestore"], + ["associative model of data", "attribute-value system"], + ["business intelligence 2.0", "enterprise bookmarking"], + ["business intelligence 2.0", "linked data"], + ["business intelligence 2.0", "ontology alignment"], + ["business intelligence 2.0", "relationship extraction"], + ["business intelligence 2.0", "semantic grid"], + ["business intelligence 2.0", "semantic web rule language"], + ["business intelligence 2.0", "spreadmart"], + ["folksonomy", "collective intelligence"], + ["folksonomy", "enterprise bookmarking"], + ["folksonomy", "faceted classification"], + ["folksonomy", "hierarchical clustering"], + ["folksonomy", "semantic similarity"], + ["folksonomy", "thesaurus"], + ["folksonomy", "weak ontology"], + ["lsid", "resource description framework"], + ["lsid", "scicrunch"], + ["swoogle", "ontology (computer science)"], + ["swoogle", "darpa agent markup language"], + ["swoogle", "web ontology language"], + ["swoogle", "semantic web"], + ["language acquisition", "chunking (psychology)"], + ["language acquisition", "evolutionary linguistics"], + ["language acquisition", "evolutionary psychology of language"], + ["language acquisition", "foxp2"], + ["language acquisition", "origin of language"], + ["flow (psychology)", "imagination"], + ["flow (psychology)", "ovsiankina effect"], + ["flow (psychology)", "wu wei"], + ["generalization (learning)", "chunking (psychology)"], + ["knowledge representation and reasoning", "alphabet of human thought"], + ["knowledge representation and reasoning", "belief revision"], + ["knowledge representation and reasoning", "chunking (psychology)"], + ["knowledge representation and reasoning", "commonsense knowledge base"], + ["knowledge representation and reasoning", "conceptual graph"], + ["knowledge representation and reasoning", "datr"], + ["knowledge representation and reasoning", "logico-linguistic modeling"], + ["knowledge representation and reasoning", "personal knowledge base"], + ["knowledge representation and reasoning", "knowledge graph"], + ["knowledge representation and reasoning", "knowledge management"], + ["knowledge representation and reasoning", "semantic technology"], + ["knowledge representation and reasoning", "valuation-based system"], + ["memory", "method of loci"], + ["memory", "mnemonic major system"], + ["merge (linguistics)", "chunking (psychology)"], + ["mnemonic", "method of loci"], + ["mnemonic", "mnemonic major system"], + ["algebraic logic", "boolean algebra"], + ["algebraic logic", "codd's theorem"], + ["language of thought hypothesis", "universal grammar"], + ["language of thought hypothesis", "world view"], + ["natural semantic metalanguage", "metalanguage"], + ["natural semantic metalanguage", "upper ontology"], + ["philosophical language", "natural semantic metalanguage"], + ["upper ontology", "authority control"], + ["upper ontology", "formal ontology"], + ["upper ontology", "library classification"], + ["upper ontology", "ontology (information science)"], + ["upper ontology", "process ontology"], + ["upper ontology", "semantic interoperability"], + ["formal ontology", "mereology"], + ["formal ontology", "ontology (information science)"], + ["formal ontology", "upper ontology"], + ["semantic interoperability", "data integration"], + ["semantic interoperability", "interoperability"], + ["semantic interoperability", "semantic computing"], + ["semantic interoperability", "udef"], + ["metalanguage", "category theory"], + ["metalanguage", "language-oriented programming"], + ["metalanguage", "metaphilosophy"], + ["metalanguage", "natural semantic metalanguage"], + ["metalanguage", "self-reference"], + ["personal knowledge base", "commonplace book"], + ["personal knowledge base", "issue-based information system"], + ["personal knowledge base", "lifelog"], + ["personal knowledge base", "notetaking"], + ["personal knowledge base", "comparison of notetaking software"], + ["personal knowledge base", "outliner"], + ["personal knowledge base", "personal knowledge management"], + ["personal knowledge base", "personal wiki"], + ["knowledge graph", "concept map"], + ["knowledge graph", "semantic technology"], + ["knowledge graph", "yago (database)"], + ["knowledge management", "information governance"], + ["knowledge management", "information management"], + ["knowledge management", "knowledge transfer"], + ["knowledge management", "personal knowledge management"], + ["evolutionary linguistics", "biolinguistics"], + ["evolutionary linguistics", "evolutionary psychology of language"], + ["evolutionary linguistics", "foxp2"], + ["evolutionary linguistics", "origin of language"], + ["evolutionary linguistics", "historical linguistics"], + ["evolutionary linguistics", "phylogenetic tree"], + ["origin of language", "abiogenesis"], + ["origin of language", "biolinguistics"], + ["origin of language", "digital infinity"], + ["origin of language", "evolutionary psychology of language"], + ["origin of language", "historical linguistics"], + ["origin of language", "origin of speech"], + ["origin of language", "proto-language"], + ["semantic translation", "data mapping"], + ["semantic translation", "iso/iec 11179"], + ["semantic translation", "national information exchange model"], + ["semantic translation", "semantic heterogeneity"], + ["semantic translation", "semantic mapper"], + ["semantic translation", "semantic web"], + ["semantic translation", "vocabulary-based transformation"], + ["semantic translation", "web ontology language"], + ["semantic unification", "ontology alignment"], + ["semantic unification", "schema matching"], + ["semantic unification", "semantic mapper"], + ["semantic unification", "semantic integration"], + ["semantic unification", "semantic parsing"], + ["semantic unification", "open mind common sense"], + ["ontology (computer science)", "commonsense knowledge bases"], + ["ontology (computer science)", "concept map"], + ["ontology (computer science)", "controlled vocabulary"], + ["ontology (computer science)", "classification scheme (information science)"], + ["ontology (computer science)", "folksonomy"], + ["ontology (computer science)", "formal concept analysis"], + ["ontology (computer science)", "formal ontology"], + ["ontology (computer science)", "knowledge graph"], + ["ontology (computer science)", "lattice (order)"], + ["ontology (computer science)", "ontology"], + ["ontology (computer science)", "ontology alignment"], + ["ontology (computer science)", "ontology chart"], + ["ontology (computer science)", "open semantic framework"], + ["ontology (computer science)", "semantic technology"], + ["ontology (computer science)", "soft ontology"], + ["ontology (computer science)", "terminology extraction"], + ["ontology (computer science)", "weak ontology"], + ["ontology (computer science)", "web ontology language"], + ["ontology (computer science)", "alphabet of human thought"], + ["ontology (computer science)", "characteristica universalis"], + ["ontology (computer science)", "interoperability"], + ["ontology (computer science)", "metalanguage"], + ["ontology (computer science)", "natural semantic metalanguage"], + ["web ontology language", "resource description framework"], + ["web ontology language", "semantic technology"], + ["web ontology language", "ideas group"], + ["web ontology language", "unified modeling language"], + ["web ontology language", "semantic reasoner"], + ["semantic web", "business semantics management"], + ["semantic web", "computational semantics"], + ["semantic web", "dbpedia"], + ["semantic web", "entity–attribute–value model"], + ["semantic web", "hyperdata"], + ["semantic web", "internet of things"], + ["semantic web", "linked data"], + ["semantic web", "ontology alignment"], + ["semantic web", "ontology learning"], + ["semantic web", "resource description framework"], + ["semantic web", "web ontology language"], + ["semantic web", "semantic computing"], + ["semantic web", "semantic heterogeneity"], + ["semantic web", "semantic integration"], + ["semantic web", "semantic matching"], + ["semantic web", "semantic mediawiki"], + ["semantic web", "semantic technology"], + ["semantic web", "web science"], + ["enterprise bookmarking", "enterprise 2.0"], + ["enterprise bookmarking", "knowledge management"], + ["enterprise bookmarking", "knowledge tagging"], + ["enterprise bookmarking", "web 2.0"], + ["enterprise bookmarking", "semantic web"], + ["enterprise bookmarking", "social networking"], + ["enterprise bookmarking", "social software"], + ["hierarchical clustering", "binary space partitioning"], + ["hierarchical clustering", "bounding volume hierarchy"], + ["hierarchical clustering", "brown clustering"], + ["hierarchical clustering", "cladistics"], + ["hierarchical clustering", "cluster analysis"], + ["hierarchical clustering", "computational phylogenetics"], + ["hierarchical clustering", "cure data clustering algorithm"], + ["hierarchical clustering", "dendrogram"], + ["hierarchical clustering", "determining the number of clusters in a data set"], + ["hierarchical clustering", "hierarchical clustering of networks"], + ["hierarchical clustering", "locality-sensitive hashing"], + ["hierarchical clustering", "nearest neighbor search"], + ["hierarchical clustering", "numerical taxonomy"], + ["hierarchical clustering", "optics algorithm"], + ["hierarchical clustering", "statistical distance"], + ["hierarchical clustering", "persistent homology"], + ["linked data", "authority control"], + ["linked data", "hyperdata"], + ["linked data", "schema.org"], + ["linked data", "void"], + ["linked data", "web ontology language"], + ["ontology alignment", "ontology (computer science)"], + ["ontology alignment", "semantic integration"], + ["ontology alignment", "semantic matching"], + ["ontology alignment", "minimal mappings"], + ["ontology alignment", "semantic unification"], + ["ontology alignment", "semantic heterogeneity"], + ["semantic grid", "business intelligence 2.0"], + ["semantic grid", "lsid"], + ["semantic grid", "semantic web rule language"], + ["semantic integration", "data integration"], + ["semantic integration", "dataspaces"], + ["semantic integration", "enterprise integration"], + ["semantic integration", "ontology-based data integration"], + ["semantic integration", "ontology alignment"], + ["semantic integration", "ontology engineering"], + ["semantic integration", "semantic heterogeneity"], + ["semantic integration", "semantic technology"], + ["semantic integration", "semantic translation"], + ["semantic integration", "semantic unification"], + ["management information system", "bachelor of computer information systems"], + ["management information system", "business intelligence"], + ["management information system", "business performance management"], + ["management information system", "business rule"], + ["management information system", "corporate governance of information technology"], + ["management information system", "data mining"], + ["management information system", "predictive analytics"], + ["management information system", "purchase order request"], + ["management information system", "enterprise architecture"], + ["management information system", "enterprise information system"], + ["management information system", "enterprise planning system"], + ["management information system", "management by objectives"], + ["management information system", "online analytical processing"], + ["management information system", "online office suite"], + ["management information system", "real-time computing"], + ["management information system", "real-time marketing"], + ["glossary of graph theory", "gallery of named graphs"], + ["glossary of graph theory", "graph algorithms"], + ["glossary of graph theory", "glossary of areas of mathematics"], + ["algebraic graph theory", "spectral graph theory"], + ["algebraic graph theory", "algebraic connectivity"], + ["algebraic graph theory", "graph property"], + ["citation graph", "web graph"], + ["citation graph", "directed acyclic graph"], + ["data structure", "abstract data type"], + ["data structure", "data model"], + ["data structure", "queap"], + ["data structure", "tree (data structure)"], + ["entitative graph", "charles sanders peirce bibliography"], + ["entitative graph", "logical graph"], + ["existential graph", "ampheck"], + ["existential graph", "conceptual graph"], + ["existential graph", "entitative graph"], + ["existential graph", "logical graph"], + ["graph automorphism", "algebraic graph theory"], + ["graph database", "hierarchical database model"], + ["graph database", "datalog"], + ["graph database", "object database"], + ["graph (data structure)", "graph traversal"], + ["graph (data structure)", "graph database"], + ["graph (data structure)", "graph rewriting"], + ["graph (data structure)", "graph drawing software"], + ["graph rewriting", "category theory"], + ["graph rewriting", "graph theory"], + ["graph rewriting", "shape grammar"], + ["graph rewriting", "formal grammar"], + ["logical graph", "charles sanders peirce bibliography"], + ["logical graph", "conceptual graph"], + ["logical graph", "propositional calculus"], + ["logical graph", "truth table"], + ["logical graph", "venn diagram"], + ["loop (graph theory)", "graph theory"], + ["loop (graph theory)", "glossary of graph theory"], + ["loop (graph theory)", "strange loop"], + ["network theory", "complex network"], + ["network theory", "quantum complex network"], + ["network theory", "dual-phase evolution"], + ["network theory", "network science"], + ["network theory", "network theory in risk assessment"], + ["network theory", "network topology"], + ["network theory", "network management"], + ["network theory", "small-world networks"], + ["network theory", "social network"], + ["network theory", "scale-free networks"], + ["network theory", "network dynamics"], + ["network theory", "sequential dynamical system"], + ["network theory", "pathfinder network"], + ["network theory", "biological network"], + ["network theory", "network medicine"], + ["null graph", "glossary of graph theory"], + ["percolation", "network theory"], + ["percolation", "percolation theory"], + ["percolation", "self-organization"], + ["semantic networks", "abstract semantic graph"], + ["semantic networks", "chunking (psychology)"], + ["semantic networks", "cmaptools"], + ["semantic networks", "concept map"], + ["semantic networks", "network diagram"], + ["semantic networks", "ontology (information science)"], + ["semantic networks", "repertory grid"], + ["semantic networks", "semantic lexicon"], + ["semantic networks", "semantic similarity network"], + ["semantic networks", "semantic neural network"], + ["semantic networks", "semeval"], + ["semantic networks", "semantic analysis (computational)"], + ["semantic networks", "sparse distributed memory"], + ["semantic networks", "taxonomy (general)"], + ["semantic networks", "unified medical language system"], + ["semantic networks", "resource description framework"], + ["semantic networks", "cognition network technology"], + ["semantic networks", "lexipedia"], + ["semantic networks", "opencog"], + ["semantic networks", "open mind common sense"], + ["semantic networks", "schema.org"], + ["semantic networks", "snomed ct"], + ["semantic networks", "universal networking language"], + ["semantic networks", "wikidata"], + ["semantic networks", "freebase (database)"], + ["spectral graph theory", "strongly regular graph"], + ["spectral graph theory", "algebraic connectivity"], + ["spectral graph theory", "algebraic graph theory"], + ["spectral graph theory", "spectral clustering"], + ["symmetric graph", "algebraic graph theory"], + ["symmetric graph", "gallery of named graphs"], + ["tree (data structure)", "tree structure"], + ["tree (data structure)", "tree (graph theory)"], + ["tree (data structure)", "tree (set theory)"], + ["tree (data structure)", "cardinal tree"], + ["tree (data structure)", "ordinal tree"], + ["tree (data structure)", "hierarchy (mathematics)"], + ["tree (data structure)", "dialog tree"], + ["tree (data structure)", "single inheritance"], + ["tree (data structure)", "generative grammar"], + ["tree (data structure)", "genetic programming"], + ["tree (data structure)", "hierarchical clustering"], + ["tree (data structure)", "binary space partition tree"], + ["tree (data structure)", "recursion"], + ["tree (data structure)", "fenwick tree"], + ["tree (data structure)", "trie"], + ["tree (data structure)", "enfilade (xanadu)"], + ["tree (data structure)", "hierarchical temporal memory"], + ["breadth-first search", "depth-first search"], + ["breadth-first search", "iterative deepening depth-first search"], + ["depth-first search", "breadth-first search"], + ["depth-first search", "iterative deepening depth-first search"], + ["dijkstra's algorithm", "bellman–ford algorithm"], + ["dijkstra's algorithm", "floyd–warshall algorithm"], + ["hopcroft–karp algorithm", "assignment problem"], + ["hopcroft–karp algorithm", "hungarian algorithm"], + ["hopcroft–karp algorithm", "edmonds–karp algorithm"], + ["kruskal's algorithm", "prim's algorithm"], + ["kruskal's algorithm", "dijkstra's algorithm"], + ["kruskal's algorithm", "borůvka's algorithm"], + ["prim's algorithm", "dijkstra's algorithm"], + ["prim's algorithm", "shortest path problem"], + ["prim's algorithm", "greedoid"], + ["topological sorting", "tarjan's strongly connected components algorithm"], + ["geometric graph theory", "topological graph theory"], + ["geometric graph theory", "spatial network"], + ["extremal graph theory", "ramsey theory"], + ["random graph", "complex networks"], + ["random graph", "dual-phase evolution"], + ["random graph", "erdős–rényi model"], + ["random graph", "graph theory"], + ["random graph", "interdependent networks"], + ["random graph", "network science"], + ["random graph", "percolation"], + ["random graph", "percolation theory"], + ["random graph", "random graph theory of gelation"], + ["topological graph theory", "topological combinatorics"], + ["combinatorics", "phylogenetics"], + ["ramsey theory", "extremal graph theory"], + ["hypergraph", "combinatorial design"], + ["hypergraph", "factor graph"], + ["hypergraph", "greedoid"], + ["hypergraph", "incidence structure"], + ["lászló lovász", "topological combinatorics"], + ["lászló lovász", "greedoid"], + ["w. t. tutte", "systolic geometry"], + ["babelnet", "knowledge acquisition"], + ["babelnet", "semantic network"], + ["babelnet", "semantic relatedness"], + ["babelnet", "wikidata"], + ["babelnet", "word sense induction"], + ["dbpedia", "babelnet"], + ["dbpedia", "semantic mediawiki"], + ["dbpedia", "wikidata"], + ["semantic mediawiki", "dbpedia"], + ["semantic mediawiki", "freebase (database)"], + ["semantic mediawiki", "wikidata"], + ["cyc", "babelnet"], + ["cyc", "categorical logic"], + ["cyc", "darpa agent markup language"], + ["cyc", "dbpedia"], + ["cyc", "freebase (database)"], + ["cyc", "mindpixel"], + ["cyc", "never-ending language learning"], + ["cyc", "open mind common sense"], + ["cyc", "semantic web"], + ["cyc", "true knowledge"], + ["cyc", "wolfram alpha"], + ["cyc", "yago (database)"], + ["entity–relationship model", "associative entity"], + ["entity–relationship model", "concept map"], + ["entity–relationship model", "database design"], + ["entity–relationship model", "data structure diagram"], + ["entity–relationship model", "enhanced entity–relationship model"], + ["entity–relationship model", "enterprise architecture framework"], + ["entity–relationship model", "entity data model"], + ["entity–relationship model", "fundamental modeling concepts"], + ["entity–relationship model", "comparison of data modeling tools"], + ["entity–relationship model", "ontology (information science)"], + ["entity–relationship model", "object-role modeling"], + ["entity–relationship model", "three schema approach"], + ["entity–relationship model", "structured entity relationship model"], + ["entity–relationship model", "schema-agnostic databases"], + ["true knowledge", "cyc"], + ["true knowledge", "wolfram alpha"], + ["true knowledge", "yago (database)"], + ["yago (database)", "commonsense knowledge bases"], + ["yago (database)", "cyc"], + ["yago (database)", "wikidata"], + ["yago (database)", "dbpedia"], + ["knowledge vault", "dbpedia"], + ["knowledge vault", "linked data"], + ["knowledge vault", "knowledge graph"], + ["knowledge vault", "semantic integration"], + ["knowledge vault", "semantic network"], + ["knowledge vault", "wikidata"], + ["clinical data interchange standards consortium", "clinical trial"], + ["clinical data interchange standards consortium", "data model"], + ["clinical data interchange standards consortium", "data warehouse"], + ["clinical data interchange standards consortium", "health informatics service architecture"], + ["clinical data interchange standards consortium", "health level 7"], + ["clinical data interchange standards consortium", "loinc"], + ["clinical data interchange standards consortium", "systematized nomenclature of medicine"], + ["clinical data interchange standards consortium", "snomed ct"], + ["docle", "loinc"], + ["docle", "medical classification"], + ["docle", "snomed ct"], + ["en 13606", "clinical data interchange standards consortium"], + ["en 13606", "continuity of care record"], + ["en 13606", "health informatics service architecture"], + ["en 13606", "health level 7"], + ["en 13606", "openehr"], + ["en 13606", "snomed ct"], + ["en 13606", "loinc"], + ["medcin", "clinical care classification system"], + ["medcin", "loinc"], + ["medcin", "snomed"], + ["medcin", "hl7"], + ["medcin", "health informatics"], + ["meddra", "systematized nomenclature of medicine"], + ["meddra", "snomed ct"], + ["meddra", "international classification of diseases"], + ["meddra", "clinical trials"], + ["omaha system", "clinical care classification system"], + ["omaha system", "health informatics"], + ["omaha system", "nanda"], + ["attempto controlled english", "gellish"], + ["attempto controlled english", "natural language processing"], + ["attempto controlled english", "natural language programming"], + ["attempto controlled english", "structured english"], + ["never-ending language learning", "cognitive architecture"], + ["never-ending language learning", "computational models of language acquisition"], + ["never-ending language learning", "cyc"], + ["mindpixel", "never-ending language learning"], + ["mindpixel", "cyc"], + ["thoughttreasure", "cyc"], + ["thoughttreasure", "open mind common sense"], + ["thoughttreasure", "wordnet"], + ["soar (cognitive architecture)", "cognitive architecture"], + ["openai", "opencog"], + ["medical classification", "health information management"], + ["medical classification", "health informatics"], + ["medical classification", "hrhis"], + ["medical classification", "nanda"], + ["medical classification", "nosology"], + ["categorization", "classification (general theory)"], + ["categorization", "library classification"], + ["categorization", "pattern recognition"], + ["categorization", "statistical classification"], + ["classification (general theory)", "taxonomy (biology)"], + ["classification (general theory)", "categorization"], + ["classification (general theory)", "folk taxonomy"], + ["classification (general theory)", "library classification"], + ["classification (general theory)", "medical classification"], + ["classification (general theory)", "statistical classification"], + ["classification (general theory)", "taxonomy (general)"], + ["hypernym", "taxonomy (general)"], + ["hypernym", "wordnet"], + ["hypernym", "semantic lexicon"], + ["knowledge representation", "alphabet of human thought"], + ["knowledge representation", "belief revision"], + ["knowledge representation", "chunking (psychology)"], + ["knowledge representation", "commonsense knowledge base"], + ["knowledge representation", "conceptual graph"], + ["knowledge representation", "datr"], + ["knowledge representation", "logico-linguistic modeling"], + ["knowledge representation", "personal knowledge base"], + ["knowledge representation", "knowledge graph"], + ["knowledge representation", "knowledge management"], + ["knowledge representation", "semantic technology"], + ["knowledge representation", "valuation-based system"], + ["lexicon", "glossary"], + ["lexicon", "lexicography"], + ["protégé (software)", "web ontology language"], + ["protégé (software)", "resource description framework"], + ["protégé (software)", "semantic technology"], + ["structuralism", "engaged theory"], + ["structuralism", "holism"], + ["taxon", "alpha taxonomy"], + ["taxon", "cladistics"], + ["taxon", "folk taxonomy"], + ["taxon", "virus classification"], + ["thesaurus (information retrieval)", "controlled vocabulary"], + ["thesaurus (information retrieval)", "thesaurus"], + ["computational semantics", "natural language understanding"], + ["computational semantics", "semantic compression"], + ["computational semantics", "semantic parsing"], + ["computational semantics", "semantic web"], + ["computational semantics", "semeval"], + ["computational semantics", "wordnet"], + ["natural language processing", "computational linguistics"], + ["natural language processing", "computer-assisted reviewing"], + ["natural language processing", "controlled natural language"], + ["natural language processing", "deep learning"], + ["natural language processing", "information extraction"], + ["natural language processing", "natural language programming"], + ["natural language processing", "natural language user interface"], + ["natural language processing", "text simplification"], + ["semantic analytics", "relationship extraction"], + ["semantic analytics", "semantic similarity"], + ["semantic analytics", "text analytics"], + ["semantic analysis (machine learning)", "information extraction"], + ["semantic analysis (machine learning)", "semantic similarity"], + ["semantic analysis (machine learning)", "ontology learning"], + ["word sense", "semantics"], + ["word sense", "word sense induction"], + ["graph (abstract data type)", "graph traversal"], + ["graph (abstract data type)", "graph database"], + ["graph (abstract data type)", "graph rewriting"], + ["graph (abstract data type)", "graph drawing software"], + ["idea networking", "brainstorming"], + ["idea networking", "concept driven strategy"], + ["idea networking", "concept mapping"], + ["idea networking", "group concept mapping"], + ["idea networking", "pathfinder network"], + ["idea networking", "repertory grid"], + ["idea networking", "social network analysis"], + ["q methodology", "card sorting"], + ["q methodology", "group concept mapping"], + ["commonsense knowledge bases", "commonsense reasoning"], + ["commonsense knowledge bases", "linked data"], + ["commonsense knowledge bases", "semantic web"], + ["commonsense knowledge bases", "ontology (information science)"], + ["commonsense knowledge bases", "artificial general intelligence"], + ["controlled vocabulary", "authority control"], + ["controlled vocabulary", "controlled natural language"], + ["controlled vocabulary", "named-entity recognition"], + ["controlled vocabulary", "ontology (computer science)"], + ["controlled vocabulary", "terminology"], + ["controlled vocabulary", "universal data element framework"], + ["controlled vocabulary", "vocabulary-based transformation"], + ["classification scheme (information science)", "iso/iec 11179"], + ["classification scheme (information science)", "metadata"], + ["classification scheme (information science)", "ontology (computer science)"], + ["classification scheme (information science)", "representation term"], + ["formal concept analysis", "association rule learning"], + ["formal concept analysis", "cluster analysis"], + ["formal concept analysis", "commonsense reasoning"], + ["formal concept analysis", "conceptual clustering"], + ["formal concept analysis", "factor analysis"], + ["formal concept analysis", "graphical model"], + ["formal concept analysis", "inductive logic programming"], + ["lattice (order)", "abstract interpretation"], + ["lattice (order)", "first-order logic"], + ["lattice (order)", "domain theory"], + ["lattice (order)", "ontology (computer science)"], + ["lattice (order)", "formal concept analysis"], + ["lattice (order)", "bloom filter"], + ["open semantic framework", "data integration"], + ["open semantic framework", "data management"], + ["open semantic framework", "enterprise information integration"], + ["open semantic framework", "linked data"], + ["open semantic framework", "middleware"], + ["open semantic framework", "ontology-based data integration"], + ["open semantic framework", "resource description framework"], + ["open semantic framework", "semantic computing"], + ["open semantic framework", "semantic integration"], + ["open semantic framework", "semantic technology"], + ["open semantic framework", "web ontology language"], + ["terminology extraction", "computational linguistics"], + ["terminology extraction", "glossary"], + ["terminology extraction", "natural language processing"], + ["terminology extraction", "subject indexing"], + ["terminology extraction", "taxonomy (general)"], + ["terminology extraction", "terminology"], + ["terminology extraction", "text mining"], + ["terminology extraction", "text simplification"], + ["interoperability", "architecture of interoperable information systems"], + ["interoperability", "semantic web"], + ["interoperability", "collaboration"], + ["interoperability", "polytely"], + ["interoperability", "universal data element framework"], + ["abstract syntax tree", "abstract semantic graph"], + ["abstract syntax tree", "control-flow graph"], + ["abstract syntax tree", "directed acyclic graph"], + ["abstract syntax tree", "extended backus–naur form"], + ["abstract syntax tree", "lisp (programming language)"], + ["abstract syntax tree", "parse tree"], + ["abstract syntax tree", "symbol table"], + ["abstract syntax tree", "dynamic syntax tree"], + ["exquisite corpse", "photoshop tennis"], + ["exquisite corpse", "comic jam"], + ["exquisite corpse", "round-robin story"], + ["exquisite corpse", "mindmap"], + ["graph (discrete mathematics)", "conceptual graph"], + ["graph (discrete mathematics)", "graph (abstract data type)"], + ["graph (discrete mathematics)", "graph database"], + ["graph (discrete mathematics)", "graph drawing"], + ["graph (discrete mathematics)", "network theory"], + ["idea", "idealism"], + ["idea", "brainstorming"], + ["idea", "creativity techniques"], + ["idea", "diffusion of innovations"], + ["idea", "ideology"], + ["idea", "notion (philosophy)"], + ["idea", "object of the mind"], + ["idea", "think tank"], + ["idea", "thought experiment"], + ["idea", "history of ideas"], + ["idea", "intellectual history"], + ["idea", "concept"], + ["idea", "philosophical analysis"], + ["nodal organizational structure", "antifragility"], + ["nodal organizational structure", "complexity theory and organizations"], + ["nodal organizational structure", "engineering of systems"], + ["nodal organizational structure", "enterprise modelling"], + ["nodal organizational structure", "flat organization"], + ["nodal organizational structure", "information management"], + ["nodal organizational structure", "hierarchical organization"], + ["nodal organizational structure", "organizational architecture"], + ["nodal organizational structure", "organizational culture"], + ["nodal organizational structure", "organizational structure"], + ["nodal organizational structure", "industrial and organizational psychology"], + ["nodal organizational structure", "social group"], + ["nodal organizational structure", "spontaneous order"], + ["nodal organizational structure", "systems theory"], + ["nodal organizational structure", "clandestine cell system"], + ["nodal organizational structure", "unorganisation"], + ["personal wiki", "commonplace book"], + ["personal wiki", "comparison of wiki software"], + ["personal wiki", "notetaking"], + ["personal wiki", "outliner"], + ["personal wiki", "personal information manager"], + ["personal wiki", "personal knowledge base"], + ["personal wiki", "personal knowledge management"], + ["personal wiki", "zettelkasten"], + ["rhizome (philosophy)", "contextualism"], + ["rhizome (philosophy)", "deleuze and guattari"], + ["rhizome (philosophy)", "heterarchy"], + ["rhizome (philosophy)", "minority (philosophy)"], + ["rhizome (philosophy)", "multiplicity (philosophy)"], + ["rhizome (philosophy)", "mutualism (biology)"], + ["rhizome (philosophy)", "perspectivism"], + ["rhizome (philosophy)", "plane of immanence"], + ["rhizome (philosophy)", "graph (abstract data type)"], + ["rhizome (philosophy)", "digital infinity"], + ["social map", "sociogram"], + ["spider mapping", "mind map"], + ["spider mapping", "concept map"], + ["biological motion", "motion perception"], + ["biological motion", "motion capture"], + ["induced movement", "motion aftereffect"], + ["induced movement", "motion perception"], + ["jerkiness", "persistence of vision"], + ["motion aftereffect", "afterimage"], + ["motion aftereffect", "motion perception"], + ["motion (physics)", "motion capture"], + ["motion sensing in vision", "biological motion"], + ["motion sensing in vision", "cognitive map"], + ["motion sensing in vision", "eye movement (sensory)"], + ["motion sensing in vision", "illusory motion"], + ["motion sensing in vision", "induced movement"], + ["motion sensing in vision", "jerkiness"], + ["motion sensing in vision", "lilac chaser"], + ["motion sensing in vision", "max wertheimer"], + ["motion sensing in vision", "motion aftereffect"], + ["motion sensing in vision", "motion (physics)"], + ["motion sensing in vision", "optical flow"], + ["motion sensing in vision", "peripheral drift illusion"], + ["motion sensing in vision", "persistence of vision"], + ["motion sensing in vision", "pulfrich effect"], + ["motion sensing in vision", "strobe light"], + ["motion sensing in vision", "stroboscopic effect"], + ["motion sensing in vision", "visual modularity"], + ["motion sensing in vision", "visual perception"], + ["motion sensing in vision", "wagon-wheel effect"], + ["persistence of vision", "afterimage"], + ["persistence of vision", "flicker fusion threshold"], + ["persistence of vision", "motion perception"], + ["strobe light", "flicker (light)"], + ["strobe light", "flicker fusion threshold"], + ["strobe light", "jerkiness"], + ["strobe light", "wagon-wheel effect"], + ["stroboscopic effect", "flicker (light)"], + ["stroboscopic effect", "flicker fusion threshold"], + ["visual modularity", "modularity"], + ["visual perception", "computer vision"], + ["visual perception", "motion perception"], + ["visual perception", "multisensory integration"], + ["visual perception", "cognitive science"], + ["wagon-wheel effect", "aliasing"], + ["wagon-wheel effect", "stroboscopic effect"], + ["causal diagram", "bayesian network"], + ["causal diagram", "structural equation modeling"], + ["causal diagram", "path analysis (statistics)"], + ["causal diagram", "causal map"], + ["causal loop diagram", "bayesian network"], + ["causal loop diagram", "directed acyclic graph"], + ["causal loop diagram", "path analysis (statistics)"], + ["causal loop diagram", "positive feedback"], + ["causal loop diagram", "system dynamics"], + ["system dynamics", "causal loop diagram"], + ["system dynamics", "ecosystem model"], + ["system dynamics", "system dynamics society"], + ["system dynamics", "wicked problem"], + ["system dynamics", "population dynamics"], + ["system dynamics", "dynamical systems theory"], + ["system dynamics", "grey box model"], + ["system dynamics", "operations research"], + ["system dynamics", "system identification"], + ["system dynamics", "systems theory"], + ["system dynamics", "systems thinking"], + ["system dynamics", "triz"], + ["operations research", "black box"], + ["operations research", "dynamic programming"], + ["operations research", "c. west churchman"], + ["operations research", "big data"], + ["operations research", "business process management"], + ["operations research", "engineering management"], + ["operations research", "industrial engineering"], + ["operations research", "project production management"], + ["operations research", "reliability engineering"], + ["operations research", "strategic management"], + ["operations research", "system safety"], + ["systems theory", "glossary of systems theory"], + ["systems theory", "autonomous agency theory"], + ["systems theory", "bibliography of sociology"], + ["systems theory", "cellular automata"], + ["systems theory", "chaos theory"], + ["systems theory", "complex systems"], + ["systems theory", "emergence"], + ["systems theory", "engaged theory"], + ["systems theory", "fractal"], + ["systems theory", "grey box model"], + ["systems theory", "irreducible complexity"], + ["systems theory", "meta-systems"], + ["systems theory", "multidimensional systems"], + ["systems theory", "open and closed systems in social science"], + ["systems theory", "pattern language"], + ["systems theory", "recursion (computer science)"], + ["systems theory", "reductionism"], + ["systems theory", "reversal theory"], + ["systems theory", "social rule system theory"], + ["systems theory", "sociotechnical system"], + ["systems theory", "sociology and complexity science"], + ["systems theory", "structure–organization–process"], + ["systems theory", "systemantics"], + ["systems theory", "system identification"], + ["systems theory", "systematics – study of multi-term systems"], + ["systems theory", "systemics"], + ["systems theory", "systemography"], + ["systems theory", "systems science"], + ["systems theory", "theoretical ecology"], + ["systems theory", "tektology"], + ["systems theory", "user-in-the-loop"], + ["systems theory", "viable system theory"], + ["systems theory", "viable systems approach"], + ["systems theory", "world-systems theory"], + ["systems theory", "structuralist economics"], + ["systems theory", "dependency theory"], + ["systems theory", "hierarchy theory"], + ["systems theory", "american society for cybernetics"], + ["systems theory", "cybernetics society"], + ["systems theory", "ieee systems, man, and cybernetics society"], + ["systems theory", "international federation for systems research"], + ["systems theory", "international society for the systems sciences"], + ["systems theory", "new england complex systems institute"], + ["systems theory", "system dynamics society"], + ["systems thinking", "glossary of systems theory"], + ["systems thinking", "autonomous agency theory"], + ["systems thinking", "bibliography of sociology"], + ["systems thinking", "cellular automata"], + ["systems thinking", "chaos theory"], + ["systems thinking", "complex systems"], + ["systems thinking", "emergence"], + ["systems thinking", "engaged theory"], + ["systems thinking", "fractal"], + ["systems thinking", "grey box model"], + ["systems thinking", "irreducible complexity"], + ["systems thinking", "meta-systems"], + ["systems thinking", "multidimensional systems"], + ["systems thinking", "open and closed systems in social science"], + ["systems thinking", "pattern language"], + ["systems thinking", "recursion (computer science)"], + ["systems thinking", "reductionism"], + ["systems thinking", "reversal theory"], + ["systems thinking", "social rule system theory"], + ["systems thinking", "sociotechnical system"], + ["systems thinking", "sociology and complexity science"], + ["systems thinking", "structure–organization–process"], + ["systems thinking", "systemantics"], + ["systems thinking", "system identification"], + ["systems thinking", "systematics – study of multi-term systems"], + ["systems thinking", "systemics"], + ["systems thinking", "systemography"], + ["systems thinking", "systems science"], + ["systems thinking", "theoretical ecology"], + ["systems thinking", "tektology"], + ["systems thinking", "user-in-the-loop"], + ["systems thinking", "viable system theory"], + ["systems thinking", "viable systems approach"], + ["systems thinking", "world-systems theory"], + ["systems thinking", "structuralist economics"], + ["systems thinking", "dependency theory"], + ["systems thinking", "hierarchy theory"], + ["systems thinking", "american society for cybernetics"], + ["systems thinking", "cybernetics society"], + ["systems thinking", "ieee systems, man, and cybernetics society"], + ["systems thinking", "international federation for systems research"], + ["systems thinking", "international society for the systems sciences"], + ["systems thinking", "new england complex systems institute"], + ["systems thinking", "system dynamics society"], + ["triz", "brainstorming"], + ["triz", "lateral thinking"], + ["triz", "systems theory"], + ["structural equation modeling", "causal model"], + ["structural equation modeling", "graphical model"], + ["structural equation modeling", "multivariate statistics"], + ["structural equation modeling", "partial least squares path modeling"], + ["structural equation modeling", "partial least squares regression"], + ["structural equation modeling", "causal map"], + ["tree (graph theory)", "hypertree"], + ["tree (graph theory)", "tree structure"], + ["tree (graph theory)", "tree (data structure)"], + ["tree (graph theory)", "decision tree"], + ["tree (graph theory)", "unrooted binary tree"], + ["tree (set theory)", "kurepa tree"], + ["tree (set theory)", "laver tree"], + ["tree (set theory)", "tree (descriptive set theory)"], + ["ordinal tree", "cardinal tree"], + ["hierarchy (mathematics)", "order theory"], + ["hierarchy (mathematics)", "tree structure"], + ["hierarchy (mathematics)", "tree (data structure)"], + ["hierarchy (mathematics)", "tree (graph theory)"], + ["hierarchy (mathematics)", "tree (descriptive set theory)"], + ["hierarchy (mathematics)", "tree (set theory)"], + ["generative grammar", "digital infinity"], + ["generative grammar", "formal grammar"], + ["generative grammar", "parsing"], + ["genetic programming", "fitness approximation"], + ["genetic programming", "gene expression programming"], + ["binary space partition tree", "k-d tree"], + ["binary space partition tree", "octree"], + ["binary space partition tree", "quadtree"], + ["binary space partition tree", "hierarchical clustering"], + ["binary space partition tree", "3d model"], + ["binary space partition tree", "guillotine cutting"], + ["recursion", "digital infinity"], + ["recursion", "self-reference"], + ["recursion", "strange loop"], + ["trie", "radix tree"], + ["enfilade (xanadu)", "hypertext"], + ["enfilade (xanadu)", "gist"], + ["hierarchical temporal memory", "deep learning"], + ["hierarchical temporal memory", "artificial general intelligence"], + ["hierarchical temporal memory", "artificial consciousness"], + ["hierarchical temporal memory", "cognitive architecture"], + ["hierarchical temporal memory", "memory-prediction framework"], + ["hierarchical temporal memory", "belief revision"], + ["hierarchical temporal memory", "belief propagation"], + ["hierarchical temporal memory", "neural networks"], + ["brainstorming", "group concept mapping"], + ["brainstorming", "lateral thinking"], + ["brainstorming", "mass collaboration"], + ["brainstorming", "speed thinking"], + ["brainstorming", "thinking outside the box"], + ["social network analysis", "attention inequality"], + ["social network analysis", "blockmodeling"], + ["social network analysis", "community structure"], + ["social network analysis", "complex network"], + ["social network analysis", "digital humanities"], + ["social network analysis", "dynamic network analysis"], + ["social network analysis", "metcalfe's law"], + ["social network analysis", "network science"], + ["social network analysis", "social media analytics"], + ["social network analysis", "social media mining"], + ["social network analysis", "social network"], + ["social network analysis", "social network analysis software"], + ["social network analysis", "social networking service"], + ["social network analysis", "social software"], + ["social network analysis", "social web"], + ["social network analysis", "sociomapping"], + ["contextualism", "anekantavada"], + ["contextualism", "degrees of truth"], + ["contextualism", "false dilemma"], + ["contextualism", "fuzzy logic"], + ["contextualism", "logical value"], + ["contextualism", "perspectivism"], + ["contextualism", "principle of bivalence"], + ["contextualism", "propositional logic"], + ["contextualism", "relativism"], + ["contextualism", "rhizome (philosophy)"], + ["deleuze and guattari", "rhizome (philosophy)"], + ["heterarchy", "folksonomy"], + ["multiplicity (philosophy)", "contextualism"], + ["multiplicity (philosophy)", "perspectivism"], + ["multiplicity (philosophy)", "rhizome (philosophy)"], + ["perspectivism", "anekantavada"], + ["perspectivism", "conceptual framework"], + ["perspectivism", "intersubjectivity"], + ["perspectivism", "metaphilosophy"], + ["perspectivism", "rhizome (philosophy)"], + ["plane of immanence", "complex systems"], + ["digital infinity", "origin of language"], + ["digital infinity", "origin of speech"], + ["digital infinity", "recursion"], + ["commonplace book", "florilegium"], + ["commonplace book", "memex"], + ["commonplace book", "notetaking"], + ["commonplace book", "comparison of notetaking software"], + ["commonplace book", "personal knowledge base"], + ["commonplace book", "personal knowledge management"], + ["commonplace book", "personal wiki"], + ["commonplace book", "reference management software"], + ["commonplace book", "thesaurus"], + ["commonplace book", "zettelkasten"], + ["comparison of wiki software", "comparison of notetaking software"], + ["comparison of wiki software", "comparison of text editors"], + ["comparison of wiki software", "comparison of word processors"], + ["comparison of wiki software", "outliner"], + ["notetaking", "florilegium"], + ["notetaking", "forgetting curve"], + ["outliner", "personal information manager"], + ["outliner", "personal knowledge base"], + ["outliner", "concept mapping"], + ["outliner", "mind map"], + ["outliner", "notetaking"], + ["outliner", "comparison of notetaking software"], + ["personal information manager", "calendaring software"], + ["personal information manager", "information management"], + ["personal information manager", "personal information management"], + ["personal information manager", "personal knowledge base"], + ["personal information manager", "personal wiki"], + ["personal knowledge management", "commonplace book"], + ["personal knowledge management", "drakon"], + ["personal knowledge management", "zettelkasten"], + ["zettelkasten", "argument map"], + ["zettelkasten", "commonplace book"], + ["zettelkasten", "hypertext"], + ["zettelkasten", "issue-based information system"], + ["zettelkasten", "memex"], + ["zettelkasten", "notetaking"], + ["zettelkasten", "comparison of notetaking software"], + ["zettelkasten", "outliner"], + ["zettelkasten", "personal knowledge base"], + ["zettelkasten", "personal knowledge management"], + ["zettelkasten", "personal wiki"], + ["zettelkasten", "reference management software"], + ["antifragility", "complexity theory and organizations"], + ["antifragility", "information management"], + ["antifragility", "nodal organizational structure"], + ["antifragility", "systems theory"], + ["antifragility", "systems engineering"], + ["antifragility", "system accident"], + ["complexity theory and organizations", "self-organization"], + ["complexity theory and organizations", "new england complex systems institute"], + ["engineering of systems", "arcadia (engineering)"], + ["engineering of systems", "control engineering"], + ["engineering of systems", "design review (u.s. government)"], + ["engineering of systems", "engineering management"], + ["engineering of systems", "enterprise systems engineering"], + ["engineering of systems", "industrial engineering"], + ["engineering of systems", "interdisciplinarity"], + ["engineering of systems", "management cybernetics"], + ["engineering of systems", "model-based systems engineering"], + ["engineering of systems", "operations management"], + ["engineering of systems", "structured systems analysis and design method"], + ["engineering of systems", "system of systems engineering"], + ["engineering of systems", "system accident"], + ["engineering of systems", "systems architecture"], + ["engineering of systems", "systems development life cycle"], + ["engineering of systems", "systems thinking"], + ["engineering of systems", "theory of constraints"], + ["engineering of systems", "value-stream mapping"], + ["engineering of systems", "system information modelling"], + ["enterprise modelling", "business process modeling"], + ["enterprise modelling", "enterprise architecture"], + ["enterprise modelling", "enterprise architecture framework"], + ["enterprise modelling", "enterprise integration"], + ["enterprise modelling", "enterprise data modeling"], + ["flat organization", "hierarchical organization"], + ["information management", "knowledge management"], + ["information management", "information technology"], + ["information management", "project management"], + ["information management", "business process"], + ["information management", "balanced scorecard"], + ["information management", "strategic management"], + ["information management", "data management"], + ["information management", "content management"], + ["information management", "information resources management journal"], + ["hierarchical organization", "biological organisation"], + ["hierarchical organization", "flat organization"], + ["organizational architecture", "organizational structure"], + ["organizational architecture", "enterprise architecture framework"], + ["organizational architecture", "view model"], + ["organizational culture", "kick the cat"], + ["organizational culture", "kiss up kick down"], + ["organizational culture", "machiavellianism in the workplace"], + ["organizational culture", "narcissism in the workplace"], + ["organizational culture", "organizational behavior"], + ["organizational culture", "organizational studies"], + ["organizational culture", "power (social and political)"], + ["organizational culture", "psychopathy in the workplace"], + ["organizational culture", "three circles model"], + ["organizational culture", "organizational learning"], + ["industrial and organizational psychology", "human resource management"], + ["industrial and organizational psychology", "industrial revolution"], + ["industrial and organizational psychology", "kick the cat"], + ["industrial and organizational psychology", "kiss up kick down"], + ["industrial and organizational psychology", "machiavellianism in the workplace"], + ["industrial and organizational psychology", "narcissism in the workplace"], + ["industrial and organizational psychology", "occupational safety and health"], + ["industrial and organizational psychology", "organizational behavior"], + ["industrial and organizational psychology", "organizational learning"], + ["industrial and organizational psychology", "psychopathy in the workplace"], + ["social group", "corporate group"], + ["social group", "globalization"], + ["social group", "group dynamics"], + ["social group", "intergroup relations"], + ["social group", "public opinion"], + ["social group", "social class"], + ["social group", "social isolation"], + ["social group", "social network"], + ["spontaneous order", "emergence"], + ["spontaneous order", "tragedy of the commons"], + ["spontaneous order", "wu wei"], + ["clandestine cell system", "leaderless resistance"], + ["unorganisation", "collaboration"], + ["unorganisation", "leaderless resistance"], + ["idealism", "rationality"], + ["idealism", "reason"], + ["creativity techniques", "decision tree"], + ["creativity techniques", "imagination"], + ["creativity techniques", "invention"], + ["creativity techniques", "lateral thinking"], + ["creativity techniques", "oblique strategies"], + ["diffusion of innovations", "collaborative innovation network"], + ["diffusion of innovations", "frugal innovation"], + ["diffusion of innovations", "hierarchical organization"], + ["diffusion of innovations", "lateral diffusion"], + ["diffusion of innovations", "memetics"], + ["diffusion of innovations", "technological revolution"], + ["ideology", "social criticism"], + ["ideology", "world view"], + ["notion (philosophy)", "concept"], + ["object of the mind", "abstraction"], + ["think tank", "collective intelligence"], + ["think tank", "internet think tanks"], + ["think tank", "mass collaboration"], + ["think tank", "mass communication"], + ["thought experiment", "black box"], + ["thought experiment", "futures studies"], + ["history of ideas", "cambridge school (intellectual history)"], + ["history of ideas", "global intellectual history"], + ["history of ideas", "great conversation"], + ["intellectual history", "cambridge school (intellectual history)"], + ["intellectual history", "global intellectual history"], + ["intellectual history", "great conversation"], + ["concept", "abstraction"], + ["concept", "categorization"], + ["concept", "class (philosophy)"], + ["concept", "concept map"], + ["concept", "conceptual framework"], + ["concept", "conceptual model"], + ["concept", "formal concept analysis"], + ["concept", "hypostatic abstraction"], + ["concept", "idea"], + ["concept", "notion (philosophy)"], + ["philosophical analysis", "thesis, antithesis, synthesis"], + ["comic jam", "exquisite corpse"], + ["mindmap", "exquisite corpse"], + ["mindmap", "graph (discrete mathematics)"], + ["mindmap", "idea"], + ["mindmap", "mental literacy"], + ["mindmap", "nodal organizational structure"], + ["mindmap", "personal wiki"], + ["mindmap", "rhizome (philosophy)"], + ["mindmap", "social map"], + ["mindmap", "spider mapping"], + ["behavioral geography", "cognitive geography"], + ["cognitive psychology", "cognition"], + ["cognitive psychology", "cognitive robotics"], + ["cognitive psychology", "digital infinity"], + ["cognitive psychology", "artificial intelligence"], + ["cognitive psychology", "formal fallacy"], + ["cognitive psychology", "personal information management"], + ["spatial cognition", "space mapping"], + ["spatial cognition", "cognitive science"], + ["spatial cognition", "cognition"], + ["geovisualization", "cartography"], + ["geovisualization", "computer-aided design"], + ["geovisualization", "computer graphics"], + ["geovisualization", "computer vision"], + ["geovisualization", "exploratory data analysis"], + ["geovisualization", "geoinformatics"], + ["geovisualization", "image processing"], + ["geovisualization", "signal processing"], + ["b-tree", "b+ tree"], + ["b-tree", "r-tree"], + ["b-tree", "red–black tree"], + ["b-tree", "2–3 tree"], + ["b-tree", "2–3–4 tree"], + ["hierarchical model", "tree structure"], + ["hierarchical model", "hierarchical query"], + ["hierarchical model", "hierarchical clustering"], + ["hierarchical query", "datalog"], + ["hierarchical query", "hierarchical model"], + ["hierarchical query", "reachability"], + ["hierarchical query", "transitive closure"], + ["hierarchical query", "tree structure"], + ["comparative method", "comparative linguistics"], + ["comparative method", "historical linguistics"], + ["comparative method", "lexicostatistics"], + ["comparative method", "proto-language"], + ["genetic relationship (linguistics)", "language family"], + ["genetic relationship (linguistics)", "comparative linguistics"], + ["genetic relationship (linguistics)", "language isolate"], + ["indo-european studies", "historical linguistics"], + ["linkage (linguistics)", "language contact"], + ["wave model (linguistics)", "memetics"], + ["father tongue hypothesis", "language family"], + ["constructed language", "knowledge representation"], + ["constructed language", "metalanguage"], + ["constructed language", "universal grammar"], + ["constructed language", "origin of language"], + ["constructed language", "universal language"], + ["endangered language", "language death"], + ["endangered language", "language policy"], + ["endangered language", "language revitalization"], + ["endangered language", "lists of endangered languages"], + ["endangered language", "lists of extinct languages"], + ["endangered language", "minority language"], + ["endangered language", "the linguists"], + ["extinct language", "endangered language"], + ["extinct language", "globalization"], + ["extinct language", "language death"], + ["extinct language", "lists of endangered languages"], + ["language death", "endangered language"], + ["language death", "lists of endangered languages"], + ["language death", "extinct language"], + ["language death", "lists of extinct languages"], + ["language death", "international auxiliary language"], + ["language death", "language contact"], + ["language death", "language policy"], + ["language death", "language revitalization"], + ["language death", "linguistic imperialism"], + ["language death", "minority language"], + ["language death", "the linguists"], + ["global language system", "linguistic imperialism"], + ["global language system", "universal language"], + ["global language system", "minority language"], + ["global language system", "international auxiliary language"], + ["proto-language (historical linguistics)", "comparative method"], + ["proto-language (historical linguistics)", "japhetic theory"], + ["proto-language (historical linguistics)", "historical linguistics"], + ["proto-language (historical linguistics)", "origin of language"], + ["proto-language (historical linguistics)", "proto-human language"], + ["proto-language (historical linguistics)", "universal language"], + ["proto-human language", "origin of language"], + ["proto-human language", "origin of speech"], + ["proto-human language", "proto-language"], + ["proto-human language", "universal grammar"], + ["unclassified language", "language isolate"], + ["datalog", "semantic web rule language"], + ["datalog", "relational database"], + ["transitive closure", "transitive reduction"], + ["binary space partitioning", "k-d tree"], + ["binary space partitioning", "octree"], + ["binary space partitioning", "quadtree"], + ["binary space partitioning", "hierarchical clustering"], + ["binary space partitioning", "3d model"], + ["binary space partitioning", "guillotine cutting"], + ["bounding volume hierarchy", "binary space partitioning"], + ["bounding volume hierarchy", "octree"], + ["bounding volume hierarchy", "k-d tree"], + ["bounding volume hierarchy", "r-tree"], + ["bounding volume hierarchy", "hierarchical clustering"], + ["cluster analysis", "conceptual clustering"], + ["cluster analysis", "community structure"], + ["cluster analysis", "spectral clustering"], + ["cluster analysis", "artificial neural network"], + ["cluster analysis", "nearest neighbor search"], + ["cluster analysis", "dimension reduction"], + ["cluster analysis", "principal component analysis"], + ["cluster analysis", "curse of dimensionality"], + ["cluster analysis", "determining the number of clusters in a data set"], + ["cluster analysis", "parallel coordinates"], + ["cluster analysis", "structured data analysis (statistics)"], + ["computational phylogenetics", "bayesian network"], + ["computational phylogenetics", "bioinformatics"], + ["computational phylogenetics", "cladistics"], + ["computational phylogenetics", "disk-covering method"], + ["computational phylogenetics", "microbial phylogenetics"], + ["computational phylogenetics", "phylogenetic comparative methods"], + ["computational phylogenetics", "phylogenetic tree"], + ["computational phylogenetics", "phylogenetics"], + ["computational phylogenetics", "population genetics"], + ["computational phylogenetics", "statistical classification"], + ["computational phylogenetics", "systematics"], + ["computational phylogenetics", "taxonomy (biology)"], + ["hierarchical clustering of networks", "network topology"], + ["hierarchical clustering of networks", "numerical taxonomy"], + ["hierarchical clustering of networks", "tree structure"], + ["locality-sensitive hashing", "bloom filter"], + ["locality-sensitive hashing", "curse of dimensionality"], + ["locality-sensitive hashing", "multilinear subspace learning"], + ["locality-sensitive hashing", "principal component analysis"], + ["locality-sensitive hashing", "singular value decomposition"], + ["locality-sensitive hashing", "sparse distributed memory"], + ["nearest neighbor search", "cluster analysis"], + ["nearest neighbor search", "curse of dimensionality"], + ["nearest neighbor search", "digital signal processing"], + ["nearest neighbor search", "dimension reduction"], + ["nearest neighbor search", "principal component analysis"], + ["nearest neighbor search", "singular value decomposition"], + ["nearest neighbor search", "sparse distributed memory"], + ["nearest neighbor search", "statistical distance"], + ["nearest neighbor search", "time series"], + ["numerical taxonomy", "computational phylogenetics"], + ["numerical taxonomy", "taxonomy (biology)"], + ["tree (descriptive set theory)", "laver tree"], + ["tree (descriptive set theory)", "set theory"], + ["behavior tree (artificial intelligence, robotics and control)", "decision tree"], + ["behavior tree (artificial intelligence, robotics and control)", "hybrid system"], + ["behavior tree (artificial intelligence, robotics and control)", "subsumption architecture"], + ["boosting (machine learning)", "adaboost"], + ["boosting (machine learning)", "random forest"], + ["boosting (machine learning)", "alternating decision tree"], + ["boosting (machine learning)", "bootstrap aggregating"], + ["boosting (machine learning)", "cascading classifiers"], + ["boosting (machine learning)", "brownboost"], + ["boosting (machine learning)", "coboosting"], + ["boosting (machine learning)", "logistic regression"], + ["boosting (machine learning)", "principle of maximum entropy"], + ["boosting (machine learning)", "neural network"], + ["boosting (machine learning)", "support vector machine"], + ["boosting (machine learning)", "gradient boosting"], + ["boosting (machine learning)", "cross-validation (statistics)"], + ["boosting (machine learning)", "machine learning"], + ["decision cycle", "adaptive management"], + ["decision cycle", "decision tree"], + ["decision cycle", "decisional balance sheet"], + ["decision cycle", "learning cycle"], + ["decision cycle", "systems development lifecycle"], + ["decision cycle", "virtuous circle and vicious circle"], + ["decision cycle", "intelligence cycle"], + ["decision list", "decision stump"], + ["decision table", "decision tree"], + ["decision table", "case based reasoning"], + ["decision table", "cause–effect graph"], + ["decision table", "dominance-based rough set approach"], + ["decision table", "drakon"], + ["decision table", "karnaugh-veitch diagram"], + ["decision table", "many-valued logic"], + ["decision table", "semantic decision table"], + ["decision tree model", "decision tree"], + ["design rationale", "goal structuring notation"], + ["design rationale", "method engineering"], + ["design rationale", "problem structuring methods"], + ["design rationale", "theory of justification"], + ["markov chain", "markov chain approximation method"], + ["markov chain", "markov chain mixing time"], + ["markov chain", "markov decision process"], + ["markov chain", "markov information source"], + ["markov chain", "markov odometer"], + ["markov chain", "markov random field"], + ["markov chain", "quantum markov chain"], + ["markov chain", "semi-markov process"], + ["markov chain", "stochastic cellular automaton"], + ["markov chain", "variable-order markov model"], + ["random forest", "boosting (machine learning)"], + ["random forest", "decision tree learning"], + ["random forest", "ensemble learning"], + ["random forest", "gradient boosting"], + ["random forest", "non-parametric statistics"], + ["random forest", "randomized algorithm"], + ["odds algorithm", "odds"], + ["odds algorithm", "clinical trial"], + ["odds algorithm", "expanded access"], + ["odds algorithm", "secretary problem"], + ["topological combinatorics", "sperner's lemma"], + ["topological combinatorics", "discrete exterior calculus"], + ["topological combinatorics", "topological graph theory"], + ["topological combinatorics", "combinatorial topology"], + ["topological combinatorics", "finite topological space"], + ["truth table", "boolean domain"], + ["truth table", "boolean-valued function"], + ["truth table", "first-order logic"], + ["truth table", "functional completeness"], + ["truth table", "karnaugh maps"], + ["truth table", "logic gate"], + ["truth table", "logical connective"], + ["truth table", "logical graph"], + ["truth table", "method of analytic tableaux"], + ["truth table", "propositional calculus"], + ["truth table", "truth function"], + ["b+ tree", "b-tree"], + ["r-tree", "k-d tree"], + ["r-tree", "bounding volume hierarchy"], + ["r-tree", "gist"], + ["red–black tree", "aa tree"], + ["red–black tree", "avl tree"], + ["red–black tree", "b-tree"], + ["red–black tree", "2–3 tree"], + ["red–black tree", "2–3–4 tree"], + ["red–black tree", "b+ tree"], + ["red–black tree", "splay tree"], + ["2–3 tree", "2–3–4 tree"], + ["2–3 tree", "aa tree"], + ["2–3 tree", "b-tree"], + ["2–3–4 tree", "2–3 tree"], + ["2–3–4 tree", "red–black tree"], + ["2–3–4 tree", "b-tree"], + ["2–3–4 tree", "queap"], + ["exploratory data analysis", "anscombe's quartet"], + ["exploratory data analysis", "data dredging"], + ["exploratory data analysis", "predictive analytics"], + ["exploratory data analysis", "structured data analysis (statistics)"], + ["exploratory data analysis", "descriptive statistics"], + ["taxonomy (biology)", "automated species identification"], + ["taxonomy (biology)", "bacterial taxonomy"], + ["taxonomy (biology)", "cladogram"], + ["taxonomy (biology)", "cladistics"], + ["taxonomy (biology)", "cluster analysis"], + ["taxonomy (biology)", "consortium for the barcode of life"], + ["taxonomy (biology)", "consortium of european taxonomic facilities"], + ["taxonomy (biology)", "dendrogram"], + ["taxonomy (biology)", "genetypes"], + ["taxonomy (biology)", "glossary of scientific naming"], + ["taxonomy (biology)", "identification (biology)"], + ["taxonomy (biology)", "incertae sedis"], + ["taxonomy (biology)", "open tree of life"], + ["taxonomy (biology)", "parataxonomy"], + ["taxonomy (biology)", "phenogram"], + ["taxonomy (biology)", "set theory"], + ["taxonomy (biology)", "taxonomy (general)"], + ["taxonomy (biology)", "virus classification"], + ["methodology", "scientific method"], + ["phenetics", "distance matrices in phylogeny"], + ["phenetics", "folk taxonomy"], + ["phenetics", "taxonomy (biology)"], + ["phenetics", "dendrogram"], + ["phylogeny", "clade"], + ["phylogeny", "cladistics"], + ["phylogeny", "computational phylogenetics"], + ["phylogeny", "evolutionary taxonomy"], + ["phylogeny", "phylogenetic comparative methods"], + ["phylogenetic comparative methods", "allometry"], + ["phylogenetic comparative methods", "biodiversity"], + ["phylogenetic comparative methods", "bioinformatics"], + ["phylogenetic comparative methods", "cladistics"], + ["phylogenetic comparative methods", "comparative method"], + ["phylogenetic comparative methods", "computational phylogenetics"], + ["phylogenetic comparative methods", "disk-covering method"], + ["phylogenetic comparative methods", "generalized linear model"], + ["phylogenetic comparative methods", "joe felsenstein"], + ["phylogenetic comparative methods", "maximum parsimony"], + ["phylogenetic comparative methods", "phylogenetics"], + ["phylogenetic comparative methods", "statistics"], + ["phylogenetic comparative methods", "systematics"], + ["biodiversity", "megadiverse countries"], + ["clade", "binomial nomenclature"], + ["clade", "biological classification"], + ["clade", "cladistics"], + ["clade", "phylogenetic network"], + ["clade", "phylogenetic nomenclature"], + ["clade", "phylogenetics"], + ["bacterial taxonomy", "taxonomy (biology)"], + ["bacterial taxonomy", "microbial ecology"], + ["cladogram", "phylogenetics"], + ["cladogram", "dendrogram"], + ["genetypes", "dna barcoding"], + ["identification (biology)", "automated species identification"], + ["identification (biology)", "dna barcoding"], + ["identification (biology)", "taxonomy (biology)"], + ["incertae sedis", "glossary of scientific naming"], + ["incertae sedis", "unclassified language"], + ["parataxonomy", "folk taxonomy"], + ["parataxonomy", "citizen science"], + ["set theory", "relational model"], + ["virus classification", "glossary of scientific naming"], + ["virus classification", "binomial nomenclature"], + ["virus classification", "biological classification"], + ["virus classification", "taxonomy (biology)"], + ["relational model", "domain relational calculus"], + ["relational model", "query language"], + ["relational model", "relation (mathematics)"], + ["relational model", "relational database"], + ["alpha taxonomy", "automated species identification"], + ["alpha taxonomy", "bacterial taxonomy"], + ["alpha taxonomy", "cladogram"], + ["alpha taxonomy", "cladistics"], + ["alpha taxonomy", "cluster analysis"], + ["alpha taxonomy", "consortium for the barcode of life"], + ["alpha taxonomy", "consortium of european taxonomic facilities"], + ["alpha taxonomy", "dendrogram"], + ["alpha taxonomy", "genetypes"], + ["alpha taxonomy", "glossary of scientific naming"], + ["alpha taxonomy", "identification (biology)"], + ["alpha taxonomy", "incertae sedis"], + ["alpha taxonomy", "open tree of life"], + ["alpha taxonomy", "parataxonomy"], + ["alpha taxonomy", "phenogram"], + ["alpha taxonomy", "set theory"], + ["alpha taxonomy", "taxonomy (general)"], + ["alpha taxonomy", "virus classification"], + ["glossary of botanical terms", "glossary of scientific naming"], + ["species description", "binomial nomenclature"], + ["species description", "glossary of scientific naming"], + ["freeware", "gratis versus libre"], + ["freeware", "comparison of user features of messaging platforms"], + ["phylogenetics", "bioinformatics"], + ["phylogenetics", "biomathematics"], + ["phylogenetics", "coalescent theory"], + ["phylogenetics", "evolutionary taxonomy"], + ["phylogenetics", "joe felsenstein"], + ["phylogenetics", "language family"], + ["phylogenetics", "maximum parsimony"], + ["phylogenetics", "microbial phylogenetics"], + ["phylogenetics", "phylogenetic comparative methods"], + ["phylogenetics", "phylogenetic network"], + ["phylogenetics", "phylogenetic nomenclature"], + ["phylogenetics", "systematics"], + ["statistics", "official statistics"], + ["the ancestor's tale", "phylogenetic tree"], + ["biological applications of bifurcation theory", "dynamical systems theory"], + ["biological applications of bifurcation theory", "theoretical biology"], + ["biological applications of bifurcation theory", "computational biology"], + ["biological applications of bifurcation theory", "systems biology"], + ["biostatistics", "bioinformatics"], + ["biostatistics", "epidemiology"], + ["biostatistics", "mathematical and theoretical biology"], + ["entropy and life", "abiogenesis"], + ["entropy and life", "complex systems"], + ["entropy and life", "dissipative system"], + ["entropy and life", "biodiversity"], + ["entropy and life", "ecology"], + ["entropy and life", "dynamical system"], + ["entropy and life", "self-organization"], + ["ewens's sampling formula", "coalescent theory"], + ["ewens's sampling formula", "biomathematics"], + ["logistic function", "diffusion of innovations"], + ["logistic function", "logistic regression"], + ["logistic function", "population dynamics"], + ["mathematical modelling of infectious disease", "disease surveillance"], + ["mathematical modelling of infectious disease", "ecosystem model"], + ["metabolic network modelling", "computational systems biology"], + ["metabolic network modelling", "computer simulation"], + ["metabolic network modelling", "metabolic network"], + ["metabolic network modelling", "metabolic pathway"], + ["metabolic network modelling", "metagenomics"], + ["molecular modelling", "cheminformatics"], + ["molecular modelling", "comparison of nucleic acid simulation software"], + ["molecular modelling", "molecular design software"], + ["molecular modelling", "molecular graphics"], + ["molecular modelling", "monte carlo method"], + ["molecular modelling", "simulated reality"], + ["molecular modelling", "structural bioinformatics"], + ["morphometrics", "allometry"], + ["morphometrics", "phylogenetic comparative methods"], + ["theoretical ecology", "butterfly effect"], + ["theoretical ecology", "ecosystem model"], + ["theoretical ecology", "mathematical biology"], + ["theoretical ecology", "population dynamics"], + ["theoretical ecology", "theoretical biology"], + ["turing pattern", "mathematical and theoretical biology"], + ["computational biology", "international society for computational biology"], + ["computational biology", "bioinformatics"], + ["computational biology", "biosimulation"], + ["computational biology", "biostatistics"], + ["computational biology", "mathematical biology"], + ["computational biology", "monte carlo method"], + ["computational biology", "structural genomics"], + ["computational biology", "systems biology"], + ["computational biomodeling", "biological data visualization"], + ["computational biomodeling", "biosimulation"], + ["computational biomodeling", "gillespie algorithm"], + ["computational biomodeling", "stochastic simulation"], + ["computational genomics", "bioinformatics"], + ["computational genomics", "computational biology"], + ["computational genomics", "genomics"], + ["computational genomics", "microarray"], + ["computational genomics", "blast"], + ["functional genomics", "systems biology"], + ["functional genomics", "structural genomics"], + ["functional genomics", "bioinformatics"], + ["health informatics", "bioinformatics"], + ["health informatics", "continuity of care record"], + ["health informatics", "health information management"], + ["health informatics", "hrhis"], + ["health informatics", "international classification of diseases"], + ["health informatics", "nosology"], + ["health informatics", "hl7"], + ["health informatics", "omaha system"], + ["health informatics", "openehr"], + ["health informatics", "snomed"], + ["jumping library", "bioinformatics"], + ["metabolomics", "genomics"], + ["metabolomics", "epigenomics"], + ["metabolomics", "proteomics"], + ["proteomics", "functional genomics"], + ["proteomics", "systems biology"], + ["proteomics", "glycomics"], + ["proteomics", "european bioinformatics institute"], + ["gene disease database", "biodiversity informatics"], + ["gene disease database", "bioinformatics companies"], + ["gene disease database", "computational biology"], + ["gene disease database", "computational biomodeling"], + ["gene disease database", "computational genomics"], + ["gene disease database", "european bioinformatics institute"], + ["gene disease database", "functional genomics"], + ["gene disease database", "health informatics"], + ["gene disease database", "international society for computational biology"], + ["gene disease database", "jumping library"], + ["gene disease database", "pathology"], + ["gene disease database", "phylogenetics"], + ["gene disease database", "structural bioinformatics"], + ["genomics", "computational genomics"], + ["genomics", "epigenomics"], + ["genomics", "functional genomics"], + ["genomics", "glycomics"], + ["genomics", "metagenomics"], + ["genomics", "pathogenomics"], + ["genomics", "proteomics"], + ["blast", "sequence alignment"], + ["simulated reality", "artificial life"], + ["simulated reality", "artificial society"], + ["simulated reality", "computational sociology"], + ["simulated reality", "philosophy of information"], + ["simulated reality", "social simulation"], + ["computational systems biology", "biological data visualization"], + ["computational systems biology", "biosimulation"], + ["computational systems biology", "gillespie algorithm"], + ["computational systems biology", "stochastic simulation"], + ["metabolic network", "metabolic network modelling"], + ["metabolic network", "metabolic pathway"], + ["metabolic pathway", "metabolic network"], + ["metabolic pathway", "metabolic network modelling"], + ["metagenomics", "microbial ecology"], + ["metagenomics", "pathogenomics"], + ["logistic regression", "logistic function"], + ["logistic regression", "logistic model tree"], + ["resolution (logic)", "inductive logic programming"], + ["resolution (logic)", "method of analytic tableaux"], + ["argument mining", "argument technology"], + ["argument mining", "argumentation theory"], + ["parse tree", "abstract syntax tree"], + ["parse tree", "computational linguistics"], + ["parse tree", "parsing"], + ["parse tree", "dynamic syntax tree"], + ["logical argument", "abductive reasoning"], + ["logical argument", "argument map"], + ["logical argument", "argumentation theory"], + ["logical argument", "bayes' theorem"], + ["logical argument", "belief bias"], + ["logical argument", "boolean logic"], + ["logical argument", "critical thinking"], + ["logical argument", "dialectic"], + ["logical argument", "evidence"], + ["logical argument", "evidence-based policy"], + ["logical argument", "inquiry"], + ["logical argument", "logical reasoning"], + ["logical argument", "practical arguments"], + ["logical argument", "soundness theorem"], + ["logical argument", "syllogism"], + ["toulmin model of argument", "argumentation theory"], + ["argumentation theory", "argument"], + ["argumentation theory", "critical thinking"], + ["argumentation theory", "dialectic"], + ["argumentation theory", "logic and dialectic"], + ["argumentation theory", "logic of argumentation"], + ["argumentation theory", "logical reasoning"], + ["argumentation theory", "public sphere"], + ["argumentation theory", "rationality"], + ["argumentation theory", "rogerian argument"], + ["argumentation theory", "social engineering (political science)"], + ["argumentation theory", "social psychology"], + ["argumentation theory", "source criticism"], + ["argumentation theory", "straight and crooked thinking"], + ["defeater", "argumentation framework"], + ["diagrammatic reasoning", "natural deduction"], + ["diagrammatic reasoning", "propositional calculus"], + ["diagrammatic reasoning", "spatial-temporal reasoning"], + ["diagrammatic reasoning", "visual reasoning"], + ["paraconsistent logic", "intuitionistic logic"], + ["boolean logic", "boolean algebra (structure)"], + ["boolean logic", "boolean algebras canonically defined"], + ["boolean logic", "intuitionistic logic"], + ["boolean logic", "principia mathematica"], + ["boolean logic", "propositional calculus"], + ["boolean logic", "relation algebra"], + ["critical thinking", "age of enlightenment"], + ["critical thinking", "argument"], + ["critical thinking", "argumentation theory"], + ["critical thinking", "cognitive bias mitigation"], + ["critical thinking", "critic"], + ["critical thinking", "demarcation problem"], + ["critical thinking", "dialectic"], + ["critical thinking", "disinformation"], + ["critical thinking", "freedom of thought"], + ["critical thinking", "freethought"], + ["critical thinking", "indoctrination"], + ["critical thinking", "logic"], + ["critical thinking", "logical reasoning"], + ["critical thinking", "philosophy education"], + ["critical thinking", "sapere aude"], + ["critical thinking", "source criticism"], + ["critical thinking", "world philosophy day"], + ["inquiry", "charles sanders peirce bibliography"], + ["inquiry", "c. west churchman"], + ["inquiry", "information theory"], + ["inquiry", "logic of information"], + ["inquiry", "pragmatic theory of truth"], + ["inquiry", "pragmaticism"], + ["inquiry", "research question"], + ["logical reasoning", "analogy"], + ["logical reasoning", "argument"], + ["logical reasoning", "argumentation theory"], + ["logical reasoning", "critical thinking"], + ["logical reasoning", "dialogical logic"], + ["logical reasoning", "fallacy"], + ["logical reasoning", "informal logic"], + ["logical reasoning", "logic"], + ["logical reasoning", "reason"], + ["computational linguistics", "computational models of language acquisition"], + ["computational linguistics", "computational semantics"], + ["computational linguistics", "computer-assisted reviewing"], + ["computational linguistics", "lexicostatistics"], + ["computational linguistics", "natural language processing"], + ["computational linguistics", "natural language user interface"], + ["computational linguistics", "semantic relatedness"], + ["computational linguistics", "universal networking language"], + ["mathematical logic", "argument"], + ["mathematical logic", "informal logic"], + ["mathematical logic", "knowledge representation and reasoning"], + ["mathematical logic", "logic"], + ["mathematical logic", "mereology"], + ["mathematical logic", "propositional calculus"], + ["mathematical logic", "well-formed formula"], + ["sequent calculus", "resolution (logic)"], + ["gerhard gentzen", "bertrand russell"], + ["system l", "natural deduction"], + ["system l", "sequent calculus"], + ["argument", "abductive reasoning"], + ["argument", "argument map"], + ["argument", "argumentation theory"], + ["argument", "bayes' theorem"], + ["argument", "belief bias"], + ["argument", "boolean logic"], + ["argument", "critical thinking"], + ["argument", "dialectic"], + ["argument", "evidence"], + ["argument", "evidence-based policy"], + ["argument", "inquiry"], + ["argument", "logical reasoning"], + ["argument", "practical arguments"], + ["argument", "soundness theorem"], + ["argument", "syllogism"], + ["rogerian argument", "cognitive bias modification"], + ["rogerian argument", "dialogue"], + ["rogerian argument", "dialogue mapping"], + ["rogerian argument", "epistemic virtue"], + ["rogerian argument", "group dynamics"], + ["rogerian argument", "immunity to change"], + ["rogerian argument", "intergroup dialogue"], + ["rogerian argument", "philosophy of dialogue"], + ["rogerian argument", "thesis, antithesis, synthesis"], + ["source criticism", "argumentation theory"], + ["source criticism", "critical thinking"], + ["source criticism", "deception"], + ["method of analytic tableaux", "resolution (logic)"], + ["logic", "logic gate"], + ["propositional calculus", "first-order logic"], + ["propositional calculus", "second-order logic"], + ["propositional calculus", "higher-order logic"], + ["propositional calculus", "boolean algebra (logic)"], + ["propositional calculus", "boolean algebra (structure)"], + ["propositional calculus", "boolean algebra topics"], + ["propositional calculus", "boolean domain"], + ["propositional calculus", "boolean function"], + ["propositional calculus", "boolean-valued function"], + ["propositional calculus", "categorical logic"], + ["propositional calculus", "combinational logic"], + ["propositional calculus", "conceptual graph"], + ["propositional calculus", "entitative graph"], + ["propositional calculus", "existential graph"], + ["propositional calculus", "laws of form"], + ["propositional calculus", "logical graph"], + ["propositional calculus", "logical value"], + ["propositional calculus", "mathematical logic"], + ["propositional calculus", "truth function"], + ["propositional calculus", "truth table"], + ["fallacy", "straight and crooked thinking"], + ["collaborative software", "collaboration technologies"], + ["collaborative software", "telecommuting"], + ["collaborative software", "computer supported cooperative work"], + ["collaborative software", "integrated collaboration environment"], + ["collaborative software", "content management system"], + ["collaborative software", "customer relationship management"], + ["collaborative software", "document management system"], + ["collaborative software", "enterprise content management"], + ["collaborative software", "intranet"], + ["collaborative software", "massively distributed collaboration"], + ["collaborative software", "online consultation"], + ["collaborative software", "online deliberation"], + ["collaborative software", "collaborative innovation network"], + ["collaborative software", "commons-based peer production"], + ["collaborative software", "electronic business"], + ["collaborative software", "information technology management"], + ["collaborative software", "management information systems"], + ["collaborative software", "management"], + ["collaborative software", "office of the future"], + ["collaborative software", "operational transformation"], + ["collaborative software", "organizational memory system"], + ["collaborative software", "cloud collaboration"], + ["collaborative software", "document collaboration"], + ["collaborative software", "mediawiki"], + ["collaborative software", "wikipedia"], + ["computational sociology", "journal of artificial societies and social simulation"], + ["computational sociology", "artificial society"], + ["computational sociology", "simulated reality"], + ["computational sociology", "social simulation"], + ["computational sociology", "agent-based social simulation"], + ["computational sociology", "social complexity"], + ["computational sociology", "computational economics"], + ["computational sociology", "cliodynamics"], + ["computational sociology", "predictive analytics"], + ["creative problem solving", "creativity"], + ["creative problem solving", "collective problem solving"], + ["creative problem solving", "frugal innovation"], + ["creative problem solving", "invention"], + ["creative problem solving", "lateral thinking"], + ["creative problem solving", "problem structuring methods"], + ["creative problem solving", "systems thinking"], + ["creative problem solving", "triz"], + ["deliberation", "argument map"], + ["deliberation", "dialogue mapping"], + ["deliberation", "low-information rationality"], + ["dialogue", "argumentation theory"], + ["dialogue", "collaborative leadership"], + ["dialogue", "deliberation"], + ["dialogue", "dialogical self"], + ["dialogue", "dialogue among civilizations"], + ["dialogue", "dialogue mapping"], + ["dialogue", "intercultural dialogue"], + ["dialogue", "interfaith dialogue"], + ["dialogue", "intergroup dialogue"], + ["dialogue", "rogerian argument"], + ["dialogue", "speech"], + ["knowledge base", "content management"], + ["knowledge base", "database"], + ["knowledge base", "enterprise bookmarking"], + ["knowledge base", "information repository"], + ["knowledge base", "knowledge-based system"], + ["knowledge base", "knowledge graph"], + ["knowledge base", "knowledge management"], + ["knowledge base", "microsoft knowledge base"], + ["knowledge base", "diffbot"], + ["knowledge base", "semantic network"], + ["knowledge base", "text mining"], + ["knowledge base", "wikidata"], + ["knowledge base", "yago (database)"], + ["socratic questioning", "argument map"], + ["socratic questioning", "argumentation theory"], + ["socratic questioning", "inquiry"], + ["socratic questioning", "intellectual virtue"], + ["socratic questioning", "interrogation"], + ["socratic questioning", "issue map"], + ["why–because analysis", "accident"], + ["why–because analysis", "cause–effect graph"], + ["why–because analysis", "fault tree analysis"], + ["why–because analysis", "five whys"], + ["why–because analysis", "ishikawa diagram"], + ["why–because analysis", "issue map"], + ["why–because analysis", "issue tree"], + ["why–because analysis", "root cause analysis"], + ["accident", "root cause analysis"], + ["accident", "safety engineering"], + ["accident", "poka-yoke"], + ["accident", "risk management"], + ["accident", "occupational safety and health"], + ["cause–effect graph", "causal diagram"], + ["cause–effect graph", "decision table"], + ["fault tree analysis", "failure mode and effects analysis"], + ["fault tree analysis", "ishikawa diagram"], + ["fault tree analysis", "reliability engineering"], + ["fault tree analysis", "root cause analysis"], + ["fault tree analysis", "safety engineering"], + ["fault tree analysis", "system safety"], + ["fault tree analysis", "why-because analysis"], + ["five whys", "eight disciplines problem solving"], + ["five whys", "five ws"], + ["five whys", "four causes"], + ["five whys", "issue map"], + ["five whys", "issue tree"], + ["five whys", "root cause analysis"], + ["five whys", "socratic method"], + ["five whys", "why–because analysis"], + ["ishikawa diagram", "seven basic tools of quality"], + ["ishikawa diagram", "five whys"], + ["ishikawa diagram", "issue map"], + ["ishikawa diagram", "issue tree"], + ["ishikawa diagram", "resource management"], + ["issue map", "collaborative software"], + ["issue map", "computational sociology"], + ["issue map", "creative problem solving"], + ["issue map", "critical thinking"], + ["issue map", "deliberation"], + ["issue map", "dialogue"], + ["issue map", "issue tree"], + ["issue map", "knowledge base"], + ["issue map", "personal knowledge base"], + ["issue map", "socratic questioning"], + ["issue map", "why–because analysis"], + ["intellectual virtue", "critical thinking"], + ["intellectual virtue", "epistemic virtue"], + ["lifelog", "personal knowledge base"], + ["comparison of notetaking software", "comparison of text editors"], + ["comparison of notetaking software", "web annotation"], + ["comparison of notetaking software", "comparison of wiki software"], + ["comparison of notetaking software", "comparison of word processors"], + ["comparison of notetaking software", "outliner"], + ["comparison of notetaking software", "personal information manager"], + ["comparison of notetaking software", "personal knowledge base"], + ["content management", "content management interoperability services"], + ["content management", "content management system"], + ["content management", "enterprise content management"], + ["content management", "information architecture"], + ["content management", "snippet management"], + ["database", "comparison of object–relational database management systems"], + ["database", "comparison of relational database management systems"], + ["database", "data store"], + ["knowledge-based system", "knowledge representation and reasoning"], + ["knowledge-based system", "knowledge base"], + ["knowledge-based system", "inference engine"], + ["knowledge-based system", "expert system"], + ["knowledge-based system", "conceptual graph"], + ["knowledge-based system", "semantic web"], + ["knowledge-based system", "neural networks"], + ["microsoft knowledge base", "diffbot"], + ["text mining", "concept mining"], + ["text mining", "news analytics"], + ["text mining", "ontology learning"], + ["text mining", "record linkage"], + ["text mining", "web mining"], + ["horizon scanning", "futurology"], + ["horizon scanning", "risk analysis"], + ["horizon scanning", "scientific lacuna"], + ["horizon scanning", "technology assessment"], + ["horizon scanning", "technology scouting"], + ["collaborative leadership", "collaboration"], + ["collaborative leadership", "wikinomics"], + ["dialogical self", "philosophy of dialogue"], + ["dialogue among civilizations", "centre for dialogue"], + ["dialogue among civilizations", "fethullah gülen"], + ["dialogue among civilizations", "interfaith dialogue"], + ["dialogue among civilizations", "kaiciid dialogue centre"], + ["dialogue among civilizations", "parliament of the world's religions"], + ["interfaith dialogue", "centre for dialogue"], + ["interfaith dialogue", "fethullah gülen"], + ["interfaith dialogue", "intercultural dialogue"], + ["interfaith dialogue", "kaiciid dialogue centre"], + ["interfaith dialogue", "parliament of the world's religions"], + ["intergroup dialogue", "dialogue"], + ["intergroup dialogue", "dialogue mapping"], + ["intergroup dialogue", "group dynamics"], + ["intergroup dialogue", "intercultural dialogue"], + ["intergroup dialogue", "intergroup relations"], + ["speech", "foxp2"], + ["speech", "origin of language"], + ["cognitive bias mitigation", "cognitive bias modification"], + ["cognitive bias mitigation", "critical theory"], + ["cognitive bias mitigation", "critical thinking"], + ["cognitive bias mitigation", "freedom of thought"], + ["cognitive bias mitigation", "freethought"], + ["cognitive bias mitigation", "inquiry"], + ["cognitive bias mitigation", "logic"], + ["critic", "analysis"], + ["critic", "critical theory"], + ["critic", "critical thinking"], + ["critic", "social criticism"], + ["demarcation problem", "idealism"], + ["demarcation problem", "relativism"], + ["disinformation", "social engineering (political science)"], + ["freedom of thought", "freethought"], + ["freedom of thought", "free will"], + ["freedom of thought", "public opinion"], + ["freethought", "freedom of thought"], + ["indoctrination", "groupthink"], + ["philosophy education", "socratic method"], + ["philosophy education", "world philosophy day"], + ["creativity", "adaptive performance"], + ["creativity", "brainstorming"], + ["creativity", "creativity techniques"], + ["creativity", "heroic theory of invention and scientific development"], + ["creativity", "innovation"], + ["creativity", "invention"], + ["creativity", "lateral thinking"], + ["creativity", "multiple discovery"], + ["collective problem solving", "actuarial science"], + ["collective problem solving", "collective intelligence"], + ["collective problem solving", "community of practice"], + ["collective problem solving", "coworking"], + ["collective problem solving", "divergent thinking"], + ["collective problem solving", "innovation"], + ["collective problem solving", "problem structuring methods"], + ["collective problem solving", "wicked problem"], + ["invention", "creativity techniques"], + ["invention", "heroic theory of invention and scientific development"], + ["invention", "multiple discovery"], + ["invention", "technological revolution"], + ["lateral thinking", "creativity techniques"], + ["lateral thinking", "brainstorming"], + ["lateral thinking", "divergent thinking"], + ["lateral thinking", "critical thinking"], + ["lateral thinking", "problem solving"], + ["lateral thinking", "oblique strategies"], + ["lateral thinking", "thinking outside the box"], + ["lateral thinking", "reason"], + ["lateral thinking", "logical reasoning"], + ["lateral thinking", "abductive reasoning"], + ["lateral thinking", "speed thinking"], + ["problem structuring methods", "causal model"], + ["problem structuring methods", "decision conferencing"], + ["problem structuring methods", "group concept mapping"], + ["problem structuring methods", "method engineering"], + ["problem structuring methods", "research question"], + ["artificial society", "complex system"], + ["artificial society", "computational sociology"], + ["artificial society", "emergence"], + ["artificial society", "evolutionary algorithm"], + ["artificial society", "simulated reality"], + ["artificial society", "social complexity"], + ["artificial society", "social simulation"], + ["social simulation", "agent-based computational economics"], + ["social simulation", "agent-based social simulation"], + ["social simulation", "artificial consciousness"], + ["social simulation", "artificial society"], + ["social simulation", "computational sociology"], + ["social simulation", "cliodynamics"], + ["social simulation", "journal of artificial societies and social simulation"], + ["social simulation", "simulated reality"], + ["social simulation", "system dynamics"], + ["agent-based social simulation", "artificial life"], + ["agent-based social simulation", "simulated reality"], + ["agent-based social simulation", "social simulation"], + ["agent-based social simulation", "journal of artificial societies and social simulation"], + ["social complexity", "complexity economics"], + ["social complexity", "complexity theory and organizations"], + ["social complexity", "econophysics"], + ["social complexity", "engaged theory"], + ["social complexity", "personal information management"], + ["social complexity", "aggregate data"], + ["social complexity", "artificial neural network"], + ["social complexity", "dual-phase evolution"], + ["social complexity", "game theory"], + ["social complexity", "multi-agent system"], + ["social complexity", "systemography"], + ["predictive analytics", "actuarial science"], + ["predictive analytics", "computational sociology"], + ["predictive analytics", "disease surveillance"], + ["predictive analytics", "learning analytics"], + ["predictive analytics", "odds algorithm"], + ["predictive analytics", "pattern recognition"], + ["predictive analytics", "social media analytics"], + ["collaboration technologies", "collaborative innovation network"], + ["collaboration technologies", "collaborative leadership"], + ["collaboration technologies", "collaborative software"], + ["collaboration technologies", "commons-based peer production"], + ["collaboration technologies", "critical thinking"], + ["collaboration technologies", "crowdsourcing"], + ["collaboration technologies", "digital collaboration"], + ["collaboration technologies", "facilitation (business)"], + ["collaboration technologies", "knowledge management"], + ["collaboration technologies", "unorganisation"], + ["collaboration technologies", "wikinomics"], + ["collaboration technologies", "outsourcing"], + ["collaboration technologies", "coworking"], + ["telecommuting", "comparison of office suites"], + ["telecommuting", "comparison of file hosting services"], + ["telecommuting", "comparison of cross-platform instant messaging clients"], + ["telecommuting", "coworking"], + ["telecommuting", "outsourcing"], + ["telecommuting", "smart city"], + ["telecommuting", "virtual workplace"], + ["computer supported cooperative work", "collaborative software"], + ["computer supported cooperative work", "collaborative innovation network"], + ["computer supported cooperative work", "collaborative information seeking"], + ["computer supported cooperative work", "computer-supported collaboration"], + ["computer supported cooperative work", "commons-based peer production"], + ["computer supported cooperative work", "integrated collaboration environment"], + ["computer supported cooperative work", "knowledge management"], + ["computer supported cooperative work", "mass collaboration"], + ["computer supported cooperative work", "social peer-to-peer processes"], + ["content management system", "content management"], + ["content management system", "document management system"], + ["content management system", "dynamic web page"], + ["content management system", "enterprise content management"], + ["content management system", "html"], + ["content management system", "information management"], + ["content management system", "knowledge management"], + ["content management system", "revision control"], + ["customer relationship management", "comparison of crm systems"], + ["customer relationship management", "intersubjectivity"], + ["document management system", "construction collaboration technology"], + ["document management system", "document automation"], + ["document management system", "enterprise content management"], + ["document management system", "information repository"], + ["document management system", "information science"], + ["document management system", "knowledge base"], + ["document management system", "knowledge management"], + ["document management system", "library science"], + ["document management system", "revision control"], + ["document management system", "snippet management"], + ["document management system", "taxonomy (general)"], + ["document management system", "technical documentation"], + ["enterprise content management", "content management interoperability services"], + ["enterprise content management", "information governance"], + ["enterprise content management", "information science"], + ["enterprise content management", "content management system"], + ["intranet", "virtual workplace"], + ["massively distributed collaboration", "collective intelligence"], + ["massively distributed collaboration", "digital collaboration"], + ["massively distributed collaboration", "mass communication"], + ["massively distributed collaboration", "open collaboration"], + ["online consultation", "collaborative software"], + ["online consultation", "intranet"], + ["online consultation", "online deliberation"], + ["online consultation", "usability"], + ["online deliberation", "argument map"], + ["online deliberation", "collaborative software"], + ["online deliberation", "computer supported cooperative work"], + ["online deliberation", "deliberation"], + ["online deliberation", "online consultation"], + ["online deliberation", "public sphere"], + ["online deliberation", "web annotation"], + ["collaborative innovation network", "collective intelligence"], + ["collaborative innovation network", "polytely"], + ["collaborative innovation network", "swarm intelligence"], + ["collaborative innovation network", "symbolic interactionism"], + ["collaborative innovation network", "commons-based peer production"], + ["collaborative innovation network", "community of practice"], + ["commons-based peer production", "collaboration"], + ["commons-based peer production", "crowdsourcing"], + ["commons-based peer production", "gift economy"], + ["commons-based peer production", "mass collaboration"], + ["commons-based peer production", "open collaboration"], + ["commons-based peer production", "social peer-to-peer processes"], + ["information technology management", "information resources management journal"], + ["management information systems", "bachelor of computer information systems"], + ["management information systems", "business intelligence"], + ["management information systems", "business performance management"], + ["management information systems", "business rule"], + ["management information systems", "corporate governance of information technology"], + ["management information systems", "data mining"], + ["management information systems", "predictive analytics"], + ["management information systems", "purchase order request"], + ["management information systems", "enterprise architecture"], + ["management information systems", "enterprise information system"], + ["management information systems", "enterprise planning system"], + ["management information systems", "management by objectives"], + ["management information systems", "online analytical processing"], + ["management information systems", "online office suite"], + ["management information systems", "real-time computing"], + ["management information systems", "real-time marketing"], + ["management", "engineering management"], + ["office of the future", "memex"], + ["organizational memory system", "knowledge tagging"], + ["cloud collaboration", "document collaboration"], + ["mediawiki", "semantic mediawiki"], + ["wikipedia", "internet"], + ["wikipedia", "network effect"], + ["wikipedia", "tree structure"], + ["wikipedia", "recursion"], + ["bayesian epistemology", "bayesian probability"], + ["bayesian epistemology", "bayesian inference"], + ["bayesian programming", "bayesian inference"], + ["bayesian programming", "bayesian probability"], + ["bayesian programming", "bayesian spam filtering"], + ["bayesian programming", "belief propagation"], + ["bayesian programming", "expectation-maximization algorithm"], + ["bayesian programming", "factor graph"], + ["bayesian programming", "graphical model"], + ["bayesian programming", "hidden markov model"], + ["bayesian programming", "kalman filter"], + ["bayesian programming", "naive bayes classifier"], + ["bayesian programming", "probabilistic logic"], + ["bayesian programming", "subjective logic"], + ["causal inference", "multivariate statistics"], + ["causal inference", "partial least squares regression"], + ["causal inference", "pathology"], + ["causal inference", "regression analysis"], + ["chow–liu tree", "bayesian network"], + ["chow–liu tree", "knowledge representation"], + ["computational intelligence", "cognitive robotics"], + ["computational intelligence", "computational economics"], + ["computational intelligence", "concept mining"], + ["computational intelligence", "data mining"], + ["deep belief network", "bayesian network"], + ["deep belief network", "deep learning"], + ["dempster–shafer theory", "probabilistic logic"], + ["dempster–shafer theory", "bayes' theorem"], + ["dempster–shafer theory", "bayesian network"], + ["dempster–shafer theory", "subjective logic"], + ["expectation–maximization algorithm", "mixture distribution"], + ["expectation–maximization algorithm", "compound distribution"], + ["expectation–maximization algorithm", "density estimation"], + ["factor graph", "belief propagation"], + ["factor graph", "bayesian inference"], + ["factor graph", "bayesian programming"], + ["factor graph", "bayesian network"], + ["factor graph", "hammersley–clifford theorem"], + ["kalman filter", "data assimilation"], + ["kalman filter", "sliding mode control"], + ["kalman filter", "stochastic differential equation"], + ["memory-prediction framework", "adaptive resonance theory"], + ["memory-prediction framework", "sparse distributed memory"], + ["mixture distribution", "compound distribution"], + ["mixture distribution", "expectation-maximization algorithm"], + ["mixture distribution", "product distribution"], + ["mixture distribution", "mixture (probability)"], + ["mixture distribution", "mixture model"], + ["mixture distribution", "graphical model"], + ["mixture distribution", "hierarchical bayes model"], + ["mixture model", "mixture (probability)"], + ["mixture model", "graphical model"], + ["mixture model", "hierarchical bayes model"], + ["naive bayes classifier", "bayesian spam filtering"], + ["naive bayes classifier", "bayesian network"], + ["naive bayes classifier", "logistic regression"], + ["polytree", "glossary of graph theory"], + ["sensor fusion", "data (computing)"], + ["sensor fusion", "data mining"], + ["sensor fusion", "image fusion"], + ["sensor fusion", "multisensory integration"], + ["sequence alignment", "sequence mining"], + ["sequence alignment", "blast"], + ["variable-order bayesian network", "markov chain"], + ["variable-order bayesian network", "examples of markov chains"], + ["variable-order bayesian network", "markov process"], + ["variable-order bayesian network", "markov chain monte carlo"], + ["variable-order bayesian network", "semi-markov process"], + ["variable-order bayesian network", "artificial intelligence"], + ["decisional balance", "immunity to change"], + ["decisional balance", "issue mapping"], + ["design pattern", "style guide"], + ["design pattern", "anti-pattern"], + ["heuristic", "algorithm"], + ["heuristic", "failure mode and effects analysis"], + ["heuristic", "heuristics in judgment and decision-making"], + ["pattern language", "method engineering"], + ["pattern language", "modularity"], + ["pattern language", "rule of thumb"], + ["pattern language", "systems theory"], + ["rule of thumb", "heuristic"], + ["method engineering", "computer-aided software engineering"], + ["method engineering", "configuration management"], + ["method engineering", "design pattern"], + ["method engineering", "design rationale"], + ["method engineering", "metadata modeling"], + ["method engineering", "pattern language"], + ["method engineering", "technical documentation"], + ["semi-markov process", "markov process"], + ["semi-markov process", "variable-order markov model"], + ["multivariate statistics", "structured data analysis (statistics)"], + ["multivariate statistics", "structural equation modeling"], + ["multivariate statistics", "design of experiments"], + ["multivariate statistics", "exploratory data analysis"], + ["multivariate statistics", "partial least squares regression"], + ["multivariate statistics", "pattern recognition"], + ["multivariate statistics", "principal component analysis"], + ["multivariate statistics", "regression analysis"], + ["multivariate statistics", "statistical interference"], + ["data mining", "association rule learning"], + ["data mining", "bayesian network"], + ["data mining", "statistical classification"], + ["data mining", "cluster analysis"], + ["data mining", "decision tree"], + ["data mining", "ensemble learning"], + ["data mining", "factor analysis"], + ["data mining", "intention mining"], + ["data mining", "multilinear subspace learning"], + ["data mining", "artificial neural network"], + ["data mining", "regression analysis"], + ["data mining", "sequence mining"], + ["data mining", "structured data analysis (statistics)"], + ["data mining", "text mining"], + ["data mining", "time series"], + ["data mining", "analytics"], + ["data mining", "big data"], + ["data mining", "bioinformatics"], + ["data mining", "business intelligence"], + ["data mining", "data analysis"], + ["data mining", "data warehouse"], + ["data mining", "exploratory data analysis"], + ["data mining", "predictive analytics"], + ["data mining", "web mining"], + ["data mining", "customer analytics"], + ["data mining", "educational data mining"], + ["data mining", "data integration"], + ["data mining", "information extraction"], + ["data mining", "information integration"], + ["data mining", "named-entity recognition"], + ["data mining", "social media mining"], + ["density estimation", "kernel density estimation"], + ["density estimation", "mean integrated squared error"], + ["density estimation", "histogram"], + ["density estimation", "multivariate kernel density estimation"], + ["density estimation", "spectral density estimation"], + ["density estimation", "generative model"], + ["density estimation", "order statistic"], + ["density estimation", "probability distribution fitting"], + ["hyperbolic geometry", "hyperbolic 3-manifold"], + ["hyperbolic geometry", "hyperbolic manifold"], + ["hyperbolic geometry", "hjelmslev transformation"], + ["hyperbolic geometry", "hyperbolic tree"], + ["hyperbolic geometry", "kleinian group"], + ["hyperbolic geometry", "lambert quadrilateral"], + ["hyperbolic geometry", "open universe"], + ["hyperbolic geometry", "poincaré metric"], + ["hyperbolic geometry", "saccheri quadrilateral"], + ["hyperbolic geometry", "systolic geometry"], + ["hyperbolic geometry", "δ-hyperbolic space"], + ["hyperbolic geometry", "band model"], + ["binary tiling", "baumslag–solitar group"], + ["binary tiling", "binary tree"], + ["binary tiling", "einstein problem"], + ["binary tiling", "hyperbolic tree"], + ["information visualization", "color coding technology for visualization"], + ["information visualization", "computational visualistics"], + ["information visualization", "data art"], + ["information visualization", "data presentation architecture"], + ["information visualization", "data visualization"], + ["information visualization", "geovisualization"], + ["information visualization", "infographics"], + ["information visualization", "software visualization"], + ["information visualization", "visual analytics"], + ["color coding technology for visualization", "false color"], + ["data art", "warming stripes"], + ["data art", "climate change art"], + ["data art", "data visualization"], + ["data art", "knowledge visualization"], + ["data art", "systems thinking"], + ["data presentation architecture", "analytics"], + ["data presentation architecture", "balanced scorecard"], + ["data presentation architecture", "big data"], + ["data presentation architecture", "business analysis"], + ["data presentation architecture", "business intelligence"], + ["data presentation architecture", "climate change art"], + ["data presentation architecture", "color coding technology for visualization"], + ["data presentation architecture", "dashboard (business)"], + ["data presentation architecture", "data analysis"], + ["data presentation architecture", "data art"], + ["data presentation architecture", "data profiling"], + ["data presentation architecture", "data science"], + ["data presentation architecture", "data warehouse"], + ["data presentation architecture", "exploratory data analysis"], + ["data presentation architecture", "infographic"], + ["data presentation architecture", "information architecture"], + ["data presentation architecture", "information design"], + ["data presentation architecture", "information visualization"], + ["data presentation architecture", "interaction design"], + ["data presentation architecture", "interaction techniques"], + ["data presentation architecture", "scientific visualization"], + ["data presentation architecture", "software visualization"], + ["data presentation architecture", "statistical analysis"], + ["data presentation architecture", "statistical graphics"], + ["data presentation architecture", "visual analytics"], + ["data presentation architecture", "visual journalism"], + ["data presentation architecture", "warming stripes"], + ["data visualization", "analytics"], + ["data visualization", "balanced scorecard"], + ["data visualization", "big data"], + ["data visualization", "business analysis"], + ["data visualization", "business intelligence"], + ["data visualization", "climate change art"], + ["data visualization", "color coding technology for visualization"], + ["data visualization", "dashboard (business)"], + ["data visualization", "data analysis"], + ["data visualization", "data art"], + ["data visualization", "data profiling"], + ["data visualization", "data science"], + ["data visualization", "data warehouse"], + ["data visualization", "exploratory data analysis"], + ["data visualization", "infographic"], + ["data visualization", "information architecture"], + ["data visualization", "information design"], + ["data visualization", "information visualization"], + ["data visualization", "interaction design"], + ["data visualization", "interaction techniques"], + ["data visualization", "scientific visualization"], + ["data visualization", "software visualization"], + ["data visualization", "statistical analysis"], + ["data visualization", "statistical graphics"], + ["data visualization", "visual analytics"], + ["data visualization", "visual journalism"], + ["data visualization", "warming stripes"], + ["infographics", "a picture is worth a thousand words"], + ["infographics", "argument map"], + ["infographics", "charts"], + ["infographics", "dashboards (management information systems)"], + ["infographics", "data presentation architecture"], + ["infographics", "data visualization"], + ["infographics", "edugraphic"], + ["infographics", "graphic design"], + ["infographics", "graphic image development"], + ["infographics", "graphic organizer"], + ["infographics", "information design"], + ["infographics", "scientific visualization"], + ["infographics", "statistical graphics"], + ["infographics", "technical illustration"], + ["infographics", "isotype (picture language)"], + ["infographics", "timeline"], + ["infographics", "visualization (graphic)"], + ["infographics", "news illustrated"], + ["infographics", "maestro concept"], + ["infographics", "family tree"], + ["software visualization", "software maintenance"], + ["software visualization", "software archaeology"], + ["visual analytics", "cartography"], + ["visual analytics", "computational visualistics"], + ["visual analytics", "critical thinking"], + ["visual analytics", "decision-making"], + ["visual analytics", "interaction design"], + ["visual analytics", "social network analysis software"], + ["visual analytics", "software visualization"], + ["visual analytics", "text analytics"], + ["visual analytics", "visual reasoning"], + ["baumslag–solitar group", "binary tiling"], + ["binary tree", "2–3 tree"], + ["binary tree", "2–3–4 tree"], + ["binary tree", "aa tree"], + ["binary tree", "avl tree"], + ["binary tree", "b-tree"], + ["binary tree", "binary space partitioning"], + ["binary tree", "recursion (computer science)"], + ["binary tree", "red–black tree"], + ["binary tree", "splay tree"], + ["binary tree", "unrooted binary tree"], + ["einstein problem", "binary tiling"], + ["decision-making", "adaptive performance"], + ["decision-making", "argument map"], + ["decision-making", "concept driven strategy"], + ["decision-making", "decision quality"], + ["decision-making", "free will"], + ["decision-making", "idea networking"], + ["decision-making", "rational choice theory"], + ["social network analysis software", "comparison of research networking tools and research profiling systems"], + ["social network analysis software", "social network"], + ["social network analysis software", "social network analysis"], + ["social network analysis software", "social networking"], + ["charts", "comparison of adobe flex charts"], + ["charts", "diagram"], + ["charts", "table (information)"], + ["charts", "drakon"], + ["charts", "exploratory data analysis"], + ["charts", "graphic organizer"], + ["charts", "information graphics"], + ["charts", "mathematical diagram"], + ["charts", "official statistics"], + ["charts", "plot (graphics)"], + ["charts", "edward tufte"], + ["charts", "misleading graph"], + ["dashboards (management information systems)", "business activity monitoring"], + ["dashboards (management information systems)", "complex event processing"], + ["dashboards (management information systems)", "corporate performance management"], + ["dashboards (management information systems)", "data presentation architecture"], + ["dashboards (management information systems)", "enterprise manufacturing intelligence"], + ["dashboards (management information systems)", "event stream processing"], + ["dashboards (management information systems)", "infographic"], + ["dashboards (management information systems)", "information design"], + ["dashboards (management information systems)", "scientific visualization"], + ["dashboards (management information systems)", "control panel (software)"], + ["graphic design", "illustration"], + ["graphic design", "information technology"], + ["graphic design", "technical illustration"], + ["graphic design", "user experience design"], + ["graphic design", "infographic"], + ["graphic design", "style guide"], + ["graphic image development", "illustration"], + ["graphic organizer", "diagram"], + ["graphic organizer", "visualization (graphic)"], + ["information design", "cartography"], + ["information design", "chief experience officer"], + ["information design", "content management"], + ["information design", "epidemiology"], + ["information design", "knowledge visualization"], + ["information design", "signage"], + ["information design", "statistics"], + ["information design", "technical illustration"], + ["information design", "wayfinding"], + ["scientific visualization", "data presentation architecture"], + ["scientific visualization", "data visualization"], + ["scientific visualization", "mathematical visualization"], + ["scientific visualization", "molecular graphics"], + ["scientific visualization", "visual analytics"], + ["statistical graphics", "data presentation architecture"], + ["statistical graphics", "chart"], + ["technical illustration", "information graphics"], + ["isotype (picture language)", "data visualization"], + ["isotype (picture language)", "information design"], + ["isotype (picture language)", "information graphics"], + ["analytics", "analysis"], + ["analytics", "analytic applications"], + ["analytics", "architectural analytics"], + ["analytics", "behavioral analytics"], + ["analytics", "business analytics"], + ["analytics", "business intelligence"], + ["analytics", "complex event processing"], + ["analytics", "customer analytics"], + ["analytics", "dashboard (business)"], + ["analytics", "data mining"], + ["analytics", "data presentation architecture"], + ["analytics", "learning analytics"], + ["analytics", "mobile location analytics"], + ["analytics", "news analytics"], + ["analytics", "online analytical processing"], + ["analytics", "online video analytics"], + ["analytics", "operational reporting"], + ["analytics", "operations research"], + ["analytics", "prediction"], + ["analytics", "predictive analytics"], + ["analytics", "predictive engineering analytics"], + ["analytics", "prescriptive analytics"], + ["analytics", "semantic analytics"], + ["analytics", "smart grid"], + ["analytics", "software analytics"], + ["analytics", "speech analytics"], + ["analytics", "statistics"], + ["analytics", "user behavior analytics"], + ["analytics", "visual analytics"], + ["analytics", "web analytics"], + ["business intelligence", "analytic applications"], + ["business intelligence", "artificial intelligence marketing"], + ["business intelligence", "business activity monitoring"], + ["business intelligence", "business intelligence 2.0"], + ["business intelligence", "business process discovery"], + ["business intelligence", "business process management"], + ["business intelligence", "customer dynamics"], + ["business intelligence", "decision engineering"], + ["business intelligence", "enterprise planning systems"], + ["business intelligence", "integrated business planning"], + ["business intelligence", "management information system"], + ["business intelligence", "mobile business intelligence"], + ["business intelligence", "operational intelligence"], + ["business intelligence", "process mining"], + ["business intelligence", "real-time business intelligence"], + ["business intelligence", "sales intelligence"], + ["business intelligence", "test and learn"], + ["dashboard (business)", "business activity monitoring"], + ["dashboard (business)", "complex event processing"], + ["dashboard (business)", "corporate performance management"], + ["dashboard (business)", "data presentation architecture"], + ["dashboard (business)", "enterprise manufacturing intelligence"], + ["dashboard (business)", "event stream processing"], + ["dashboard (business)", "infographic"], + ["dashboard (business)", "information design"], + ["dashboard (business)", "scientific visualization"], + ["dashboard (business)", "control panel (software)"], + ["information architecture", "card sorting"], + ["information architecture", "chief experience officer"], + ["information architecture", "content management"], + ["information architecture", "controlled vocabulary"], + ["information architecture", "data management"], + ["information architecture", "data presentation architecture"], + ["information architecture", "digital humanities"], + ["information architecture", "enterprise information security architecture"], + ["information architecture", "faceted classification"], + ["information architecture", "informatics"], + ["information architecture", "interaction design"], + ["information architecture", "process architecture"], + ["information architecture", "tree testing"], + ["information architecture", "user experience design"], + ["information architecture", "wayfinding"], + ["information architecture", "web graph"], + ["false color", "nasa world wind"], + ["false color", "imaginary colors"], + ["false color", "hyperspectral imaging"], + ["formal grammar", "abstract syntax tree"], + ["formal grammar", "extended backus–naur form"], + ["formal grammar", "shape grammar"], + ["formal grammar", "well-formed formula"], + ["hyperbolic manifold", "hyperbolic 3-manifold"], + ["poincaré metric", "kleinian group"], + ["saccheri quadrilateral", "lambert quadrilateral"], + ["boolean domain", "boolean-valued function"], + ["boolean-valued function", "boolean algebra (logic)"], + ["boolean-valued function", "boolean domain"], + ["boolean-valued function", "boolean logic"], + ["boolean-valued function", "propositional calculus"], + ["boolean-valued function", "truth table"], + ["boolean-valued function", "indicator function"], + ["boolean-valued function", "boolean function"], + ["first-order logic", "extension (predicate logic)"], + ["first-order logic", "higher-order logic"], + ["first-order logic", "relational algebra"], + ["first-order logic", "relational model"], + ["first-order logic", "second-order logic"], + ["first-order logic", "truth table"], + ["first-order logic", "type (model theory)"], + ["functional completeness", "algebra of sets"], + ["functional completeness", "boolean algebra"], + ["karnaugh maps", "algebraic normal form"], + ["karnaugh maps", "binary decision diagram"], + ["karnaugh maps", "espresso heuristic logic minimizer"], + ["karnaugh maps", "logic optimization"], + ["karnaugh maps", "punnett square"], + ["karnaugh maps", "quine–mccluskey algorithm"], + ["karnaugh maps", "reed–muller expansion"], + ["karnaugh maps", "venn diagram"], + ["karnaugh maps", "zhegalkin polynomial"], + ["logic gate", "boolean algebra topics"], + ["logic gate", "boolean function"], + ["logic gate", "espresso heuristic logic minimizer"], + ["logic gate", "functional completeness"], + ["logic gate", "karnaugh map"], + ["logic gate", "combinational logic"], + ["logic gate", "logical graph"], + ["logic gate", "propositional calculus"], + ["logic gate", "truth table"], + ["logical connective", "boolean domain"], + ["logical connective", "boolean function"], + ["logical connective", "boolean logic"], + ["logical connective", "boolean-valued function"], + ["logical connective", "four-valued logic"], + ["logical connective", "logical constant"], + ["logical connective", "modal operator"], + ["logical connective", "propositional calculus"], + ["logical connective", "truth function"], + ["logical connective", "truth table"], + ["logical connective", "truth value"], + ["truth function", "bertrand russell"], + ["truth function", "principia mathematica"], + ["truth function", "bitwise operation"], + ["truth function", "boolean domain"], + ["truth function", "boolean function"], + ["truth function", "boolean logic"], + ["truth function", "boolean-valued function"], + ["truth function", "logical connective"], + ["truth function", "logical constant"], + ["truth function", "modal operator"], + ["truth function", "propositional calculus"], + ["truth function", "truth table"], + ["truth function", "truth value"], + ["boolean function", "boolean-valued function"], + ["boolean function", "algebra of sets"], + ["boolean function", "decision tree model"], + ["boolean function", "indicator function"], + ["logical constant", "logical value"], + ["logical constant", "logical connective"], + ["truth value", "bayesian probability"], + ["truth value", "false dilemma"], + ["laws of form", "boolean algebra (logic)"], + ["laws of form", "boolean algebra (structure)"], + ["laws of form", "boolean algebras canonically defined"], + ["laws of form", "boolean logic"], + ["laws of form", "entitative graph"], + ["laws of form", "existential graph"], + ["laws of form", "propositional calculus"], + ["karnaugh map", "algebraic normal form"], + ["karnaugh map", "binary decision diagram"], + ["karnaugh map", "espresso heuristic logic minimizer"], + ["karnaugh map", "logic optimization"], + ["karnaugh map", "punnett square"], + ["karnaugh map", "quine–mccluskey algorithm"], + ["karnaugh map", "reed–muller expansion"], + ["karnaugh map", "venn diagram"], + ["karnaugh map", "zhegalkin polynomial"], + ["algebraic normal form", "reed–muller expansion"], + ["algebraic normal form", "zhegalkin normal form"], + ["algebraic normal form", "boolean function"], + ["algebraic normal form", "logical graph"], + ["algebraic normal form", "zhegalkin polynomial"], + ["algebraic normal form", "karnaugh map"], + ["binary decision diagram", "model checking"], + ["binary decision diagram", "radix tree"], + ["binary decision diagram", "karnaugh map"], + ["logic optimization", "binary decision diagram"], + ["punnett square", "karnaugh map"], + ["reed–muller expansion", "algebraic normal form"], + ["reed–muller expansion", "ring sum normal form"], + ["reed–muller expansion", "zhegalkin normal form"], + ["reed–muller expansion", "karnaugh map"], + ["zhegalkin polynomial", "algebraic normal form"], + ["zhegalkin polynomial", "ring sum normal form"], + ["zhegalkin polynomial", "boolean domain"], + ["zhegalkin polynomial", "boolean-valued function"], + ["relational algebra", "cartesian product"], + ["relational algebra", "d (data language specification)"], + ["relational algebra", "database"], + ["relational algebra", "logic of relatives"], + ["relational algebra", "object-role modeling"], + ["relational algebra", "projection (mathematics)"], + ["relational algebra", "projection (relational algebra)"], + ["relational algebra", "projection (set theory)"], + ["relational algebra", "relation (mathematics)"], + ["relational algebra", "relation (database)"], + ["relational algebra", "relation algebra"], + ["relational algebra", "relation composition"], + ["relational algebra", "relation construction"], + ["relational algebra", "relational calculus"], + ["relational algebra", "relational database"], + ["relational algebra", "relational model"], + ["relational algebra", "theory of relations"], + ["relational algebra", "triadic relation"], + ["relational algebra", "tuple relational calculus"], + ["relational algebra", "sql"], + ["relational algebra", "datalog"], + ["relational algebra", "codd's theorem"], + ["sperner's lemma", "topological combinatorics"], + ["discrete exterior calculus", "topological combinatorics"], + ["combinatorial topology", "topological combinatorics"], + ["combinatorial topology", "topological graph theory"], + ["finite topological space", "topological combinatorics"], + ["odds", "odds algorithm"], + ["odds", "logistic regression"], + ["odds", "optimal stopping"], + ["clinical trial", "odds algorithm"], + ["secretary problem", "assignment problem"], + ["secretary problem", "odds algorithm"], + ["secretary problem", "optimal stopping"], + ["decision tree learning", "binary decision diagram"], + ["decision tree learning", "predictive analytics"], + ["decision tree learning", "decision stump"], + ["decision tree learning", "adaboost"], + ["decision tree learning", "decision list"], + ["decision tree learning", "alternating decision tree"], + ["decision tree learning", "structured data analysis (statistics)"], + ["decision tree learning", "logistic model tree"], + ["decision tree learning", "hierarchical clustering"], + ["gradient boosting", "adaboost"], + ["gradient boosting", "random forest"], + ["gradient boosting", "decision tree learning"], + ["non-parametric statistics", "resampling (statistics)"], + ["markov chain approximation method", "control theory"], + ["markov chain approximation method", "optimal control"], + ["markov chain approximation method", "stochastic differential equation"], + ["markov chain approximation method", "stochastic process"], + ["markov decision process", "quantum finite automata"], + ["markov decision process", "dynamic programming"], + ["markov decision process", "optimal control"], + ["markov random field", "graphical model"], + ["markov random field", "hammersley–clifford theorem"], + ["markov random field", "markov chain"], + ["markov random field", "stochastic cellular automaton"], + ["variable-order markov model", "examples of markov chains"], + ["variable-order markov model", "markov process"], + ["variable-order markov model", "markov chain monte carlo"], + ["variable-order markov model", "semi-markov process"], + ["variable-order markov model", "artificial intelligence"], + ["goal structuring notation", "design rationale"], + ["adaboost", "bootstrap aggregating"], + ["adaboost", "coboosting"], + ["adaboost", "brownboost"], + ["adaboost", "gradient boosting"], + ["bootstrap aggregating", "boosting (meta-algorithm)"], + ["bootstrap aggregating", "bootstrapping (statistics)"], + ["bootstrap aggregating", "cross-validation (statistics)"], + ["bootstrap aggregating", "out-of-bag error"], + ["bootstrap aggregating", "random forest"], + ["bootstrap aggregating", "predictive analytics"], + ["cascading classifiers", "boosting (meta-algorithm)"], + ["cascading classifiers", "bootstrap aggregating"], + ["brownboost", "boosting (machine learning)"], + ["brownboost", "adaboost"], + ["brownboost", "alternating decision tree"], + ["principle of maximum entropy", "maximum entropy probability distribution"], + ["principle of maximum entropy", "maximum entropy spectral estimation"], + ["neural network", "adaptive resonance theory"], + ["neural network", "cognitive architecture"], + ["neural network", "cognitive science"], + ["neural network", "deep learning"], + ["neural network", "evolutionary algorithm"], + ["neural network", "genetic algorithm"], + ["neural network", "gene expression programming"], + ["neural network", "in situ adaptive tabulation"], + ["neural network", "multilinear subspace learning"], + ["neural network", "predictive analytics"], + ["neural network", "radial basis function network"], + ["neural network", "simulated reality"], + ["neural network", "support vector machine"], + ["support vector machine", "in situ adaptive tabulation"], + ["support vector machine", "predictive analytics"], + ["support vector machine", "space mapping"], + ["cross-validation (statistics)", "boosting (machine learning)"], + ["cross-validation (statistics)", "bootstrap aggregating"], + ["cross-validation (statistics)", "out-of-bag error"], + ["cross-validation (statistics)", "bootstrapping (statistics)"], + ["cross-validation (statistics)", "model selection"], + ["cross-validation (statistics)", "resampling (statistics)"], + ["decision stump", "decision list"], + ["case based reasoning", "abductive reasoning"], + ["case based reasoning", "commonsense reasoning"], + ["case based reasoning", "decision tree"], + ["case based reasoning", "genetic algorithm"], + ["case based reasoning", "pattern matching"], + ["case based reasoning", "analogy"], + ["case based reasoning", "ripple down rules"], + ["karnaugh-veitch diagram", "algebraic normal form"], + ["karnaugh-veitch diagram", "binary decision diagram"], + ["karnaugh-veitch diagram", "espresso heuristic logic minimizer"], + ["karnaugh-veitch diagram", "logic optimization"], + ["karnaugh-veitch diagram", "punnett square"], + ["karnaugh-veitch diagram", "quine–mccluskey algorithm"], + ["karnaugh-veitch diagram", "reed–muller expansion"], + ["karnaugh-veitch diagram", "venn diagram"], + ["karnaugh-veitch diagram", "zhegalkin polynomial"], + ["many-valued logic", "degrees of truth"], + ["many-valued logic", "fuzzy logic"], + ["many-valued logic", "principle of bivalence"], + ["many-valued logic", "false dilemma"], + ["adaptive management", "decision cycle"], + ["adaptive management", "ecology"], + ["adaptive management", "learning cycle"], + ["adaptive management", "operations research"], + ["decisional balance sheet", "immunity to change"], + ["decisional balance sheet", "issue mapping"], + ["systems development lifecycle", "application lifecycle management"], + ["systems development lifecycle", "decision cycle"], + ["systems development lifecycle", "ipo model"], + ["systems development lifecycle", "software development methodologies"], + ["virtuous circle and vicious circle", "causal loop diagram"], + ["virtuous circle and vicious circle", "positive feedback"], + ["intelligence cycle", "decision cycle"], + ["intelligence cycle", "learning cycle"], + ["intelligence cycle", "ooda loop"], + ["hybrid system", "sliding mode control"], + ["subsumption architecture", "cognitive architecture"], + ["multilinear subspace learning", "dimension reduction"], + ["multilinear subspace learning", "tensor"], + ["multilinear subspace learning", "tensor decomposition"], + ["multilinear subspace learning", "tensor software"], + ["risk analysis", "risk assessment"], + ["risk analysis", "optimism bias"], + ["risk analysis", "precautionary principle"], + ["risk analysis", "risk management tools"], + ["risk analysis", "reference class forecasting"], + ["technology assessment", "horizon scanning"], + ["technology assessment", "scientific lacuna"], + ["technology assessment", "technology dynamics"], + ["technology scouting", "futurology"], + ["technology scouting", "horizon scanning"], + ["technology scouting", "scientific lacuna"], + ["eight disciplines problem solving", "corrective and preventive action"], + ["eight disciplines problem solving", "failure mode and effects analysis"], + ["eight disciplines problem solving", "fault tree analysis"], + ["eight disciplines problem solving", "quality management system"], + ["eight disciplines problem solving", "problem solving"], + ["eight disciplines problem solving", "a3 problem solving"], + ["five ws", "five whys"], + ["why-because analysis", "accident"], + ["why-because analysis", "cause–effect graph"], + ["why-because analysis", "fault tree analysis"], + ["why-because analysis", "five whys"], + ["why-because analysis", "ishikawa diagram"], + ["why-because analysis", "issue map"], + ["why-because analysis", "issue tree"], + ["why-because analysis", "root cause analysis"], + ["corrective and preventive action", "eight disciplines problem solving"], + ["corrective and preventive action", "good documentation practice"], + ["corrective and preventive action", "good automated manufacturing practice"], + ["logic of information", "charles sanders peirce bibliography"], + ["logic of information", "information theory"], + ["logic of information", "inquiry"], + ["logic of information", "philosophy of information"], + ["logic of information", "pragmatic theory of truth"], + ["logic of information", "pragmaticism"], + ["logic of information", "scientific method"], + ["logic of information", "triadic relation"], + ["news analytics", "computational linguistics"], + ["news analytics", "text mining"], + ["news analytics", "natural language processing"], + ["ontology learning", "computational linguistics"], + ["ontology learning", "ontology (computer science)"], + ["ontology learning", "information extraction"], + ["ontology learning", "natural language understanding"], + ["ontology learning", "semantic web"], + ["ontology learning", "text mining"], + ["social networking", "collective intelligence"], + ["social networking", "comparison of research networking tools and research profiling systems"], + ["social networking", "enterprise bookmarking"], + ["social networking", "internet"], + ["social networking", "internet think tanks"], + ["social networking", "lateral diffusion"], + ["social networking", "mass collaboration"], + ["social networking", "social software"], + ["social networking", "social web"], + ["comparison of word processors", "comparison of spreadsheet software"], + ["comparison of word processors", "comparison of text editors"], + ["comparison of word processors", "comparison of office suites"], + ["comparison of word processors", "office suite"], + ["comparison of word processors", "online office suite"], + ["analysis", "methodology"], + ["analysis", "scientific method"], + ["online analytical processing", "comparison of olap servers"], + ["polytely", "cognitive science"], + ["polytely", "game theory"], + ["polytely", "multi-agent system"], + ["polytely", "network science"], + ["polytely", "organizational studies"], + ["polytely", "problem solving"], + ["polytely", "systems theory"], + ["html", "dynamic web page"], + ["html", "microdata (html)"], + ["html", "microformat"], + ["learning analytics", "analytics"], + ["learning analytics", "big data"], + ["learning analytics", "data mining"], + ["learning analytics", "educational data mining"], + ["learning analytics", "machine learning"], + ["learning analytics", "odds algorithm"], + ["learning analytics", "pattern recognition"], + ["learning analytics", "predictive analytics"], + ["learning analytics", "social network analysis"], + ["learning analytics", "text analytics"], + ["learning analytics", "web analytics"], + ["facilitation (business)", "decision conferencing"], + ["facilitation (business)", "dialogue mapping"], + ["computer-supported collaboration", "citizen science"], + ["computer-supported collaboration", "collaborative information seeking"], + ["computer-supported collaboration", "integrated collaboration environment"], + ["computer-supported collaboration", "mass collaboration"], + ["computer-supported collaboration", "wicked problem"], + ["comparison of office suites", "comparison of word processors"], + ["comparison of office suites", "comparison of spreadsheet software"], + ["game theory", "applied ethics"], + ["game theory", "precautionary principle"], + ["game theory", "risk management"], + ["game theory", "tragedy of the commons"], + ["gratis versus libre", "gift economy"], + ["comparison of user features of messaging platforms", "comparison of cross-platform instant messaging clients"], + ["complex system", "biological organisation"], + ["complex system", "chaos theory"], + ["complex system", "cognitive science"], + ["complex system", "complex adaptive system"], + ["complex system", "complex networks"], + ["complex system", "complexity economics"], + ["complex system", "decision engineering"], + ["complex system", "dissipative system"], + ["complex system", "dual-phase evolution"], + ["complex system", "dynamical system"], + ["complex system", "dynamical systems theory"], + ["complex system", "emergence"], + ["complex system", "enterprise systems engineering"], + ["complex system", "fractal"], + ["complex system", "hierarchy theory"], + ["complex system", "interdependent networks"], + ["complex system", "multi-agent system"], + ["complex system", "network science"], + ["complex system", "percolation"], + ["complex system", "percolation theory"], + ["complex system", "process architecture"], + ["complex system", "self-organization"], + ["complex system", "sociology and complexity science"], + ["complex system", "system accident"], + ["complex system", "system dynamics"], + ["complex system", "systems theory"], + ["complex system", "tektology"], + ["time series", "digital signal processing"], + ["time series", "estimation theory"], + ["time series", "forecasting"], + ["time series", "monte carlo method"], + ["time series", "signal processing"], + ["time series", "trend estimation"], + ["network topology", "computer network diagram"], + ["network topology", "rhizome (philosophy)"], + ["network topology", "tree structure"], + ["conceptual schema", "concept mapping"], + ["conceptual schema", "conceptual framework"], + ["conceptual schema", "conceptual graphs"], + ["conceptual schema", "conceptual model (computer science)"], + ["conceptual schema", "data modeling"], + ["conceptual schema", "entity-relationship model"], + ["conceptual schema", "object-relationship modelling"], + ["conceptual schema", "object-role modeling"], + ["conceptual schema", "knowledge representation"], + ["conceptual schema", "logical data model"], + ["conceptual schema", "mindmap"], + ["conceptual schema", "ontology (computer science)"], + ["conceptual schema", "physical data model"], + ["conceptual schema", "semantic web"], + ["conceptual schema", "three schema approach"], + ["information flow diagram", "access control matrix"], + ["information flow diagram", "business process model and notation"], + ["information flow diagram", "information cascade"], + ["information flow diagram", "information systems"], + ["information flow diagram", "niam"], + ["information flow diagram", "object-role modeling"], + ["information flow diagram", "system context diagram"], + ["information flow diagram", "systems thinking"], + ["ontology double articulation", "ontology modularization"], + ["ontology engineering", "ontology (information science)"], + ["ontology engineering", "ontology double articulation"], + ["ontology engineering", "ontology learning"], + ["ontology engineering", "ontology modularization"], + ["ontology engineering", "semantic decision table"], + ["ontology engineering", "semantic integration"], + ["ontology engineering", "semantic technology"], + ["ontology engineering", "semantic web"], + ["ontology engineering", "linked data"], + ["three schema approach", "conceptual schema"], + ["three schema approach", "data model"], + ["three schema approach", "data modeling"], + ["three schema approach", "entity-relationship model"], + ["three schema approach", "information systems"], + ["three schema approach", "object-role modeling"], + ["three schema approach", "view model"], + ["corporate interlocks", "cartel"], + ["corporate interlocks", "insider trading"], + ["corporate interlocks", "oligarchy"], + ["corporate interlocks", "price fixing"], + ["corporate interlocks", "revolving door (politics)"], + ["corporate interlocks", "social class"], + ["diagram", "chart"], + ["diagram", "table (information)"], + ["diagram", "diagrammatic reasoning"], + ["diagram", "experience model"], + ["diagram", "mathematical diagram"], + ["diagram", "plot (graphics)"], + ["network science", "cascading failure"], + ["network science", "climate as complex networks"], + ["network science", "collaborative innovation network"], + ["network science", "complex network"], + ["network science", "core-periphery structure"], + ["network science", "dual-phase evolution"], + ["network science", "erdős–rényi model"], + ["network science", "glossary of graph theory"], + ["network science", "higher category theory"], + ["network science", "irregular warfare"], + ["network science", "interdependent networks"], + ["network science", "network management"], + ["network science", "network dynamics"], + ["network science", "network theory in risk assessment"], + ["network science", "network topology"], + ["network science", "percolation"], + ["network science", "percolation theory"], + ["network science", "policy network analysis"], + ["network science", "polytely"], + ["network science", "quantum complex network"], + ["network science", "random networks"], + ["network science", "scale-free networks"], + ["network science", "sequential dynamical system"], + ["network science", "service network"], + ["network science", "small-world networks"], + ["network science", "structural cut-off"], + ["network science", "systems theory"], + ["social balance theory", "balance theory"], + ["social balance theory", "sociogram"], + ["sociomapping", "participatory rural appraisal"], + ["sociomapping", "high-performance teams"], + ["sociomapping", "human resources"], + ["sociomapping", "marketing research"], + ["sociomapping", "sociometry"], + ["sociomapping", "team management"], + ["sociometry", "psychodrama"], + ["sociometry", "social interaction"], + ["sociometry", "social status"], + ["sociometry", "socionics"], + ["psychodrama", "sociometry"], + ["social interaction", "social isolation"], + ["social interaction", "symbolic interactionism"], + ["social interaction", "engaged theory"], + ["social interaction", "social psychology"], + ["social status", "power (social and political)"], + ["social status", "ranked society"], + ["social status", "social class"], + ["social status", "social stratification"], + ["socionics", "japhetic theory"], + ["participatory rural appraisal", "problem structuring methods"], + ["human resources", "human resource management"], + ["human resources", "industrial and organizational psychology"], + ["marketing research", "a/b testing"], + ["marketing research", "knowledge management"], + ["team management", "management"], + ["team management", "socionics"], + ["balance theory", "social balance theory"], + ["cascading failure", "butterfly effect"], + ["cascading failure", "chaos theory"], + ["cascading failure", "network science"], + ["cascading failure", "network theory"], + ["cascading failure", "interdependent networks"], + ["cascading failure", "percolation theory"], + ["cascading failure", "virtuous circle and vicious circle"], + ["cascading failure", "wicked problem"], + ["climate as complex networks", "community structure"], + ["climate as complex networks", "network theory"], + ["climate as complex networks", "network science"], + ["complex network", "community structure"], + ["complex network", "complex adaptive system"], + ["complex network", "complex systems"], + ["complex network", "dual-phase evolution"], + ["complex network", "dynamic network analysis"], + ["complex network", "interdependent networks"], + ["complex network", "network theory"], + ["complex network", "network science"], + ["complex network", "percolation theory"], + ["complex network", "random graph"], + ["complex network", "random graph theory of gelation"], + ["complex network", "scale-free networks"], + ["complex network", "spatial network"], + ["interdependent networks", "cascading failure"], + ["interdependent networks", "complex networks"], + ["interdependent networks", "network science"], + ["interdependent networks", "percolation theory"], + ["network management", "integrated business planning"], + ["network dynamics", "dynamic network analysis"], + ["network dynamics", "neural network"], + ["network dynamics", "gene regulatory network"], + ["network dynamics", "dynamic bayesian network"], + ["network dynamics", "dual-phase evolution"], + ["network dynamics", "technology dynamics"], + ["policy network analysis", "rational choice theory"], + ["policy network analysis", "network science"], + ["quantum complex network", "erdős–rényi model"], + ["random networks", "ford–fulkerson algorithm"], + ["random networks", "shortest path problem"], + ["sequential dynamical system", "gene regulatory network"], + ["sequential dynamical system", "dynamic bayesian network"], + ["sequential dynamical system", "petri net"], + ["service network", "enterprise 2.0"], + ["structural cut-off", "complex network"], + ["petri net", "process architecture"], + ["integrated business planning", "business process modeling"], + ["integrated business planning", "business reference model"], + ["integrated business planning", "business intelligence"], + ["chart", "comparison of adobe flex charts"], + ["chart", "diagram"], + ["chart", "table (information)"], + ["chart", "drakon"], + ["chart", "exploratory data analysis"], + ["chart", "graphic organizer"], + ["chart", "information graphics"], + ["chart", "mathematical diagram"], + ["chart", "official statistics"], + ["chart", "plot (graphics)"], + ["chart", "edward tufte"], + ["chart", "misleading graph"], + ["experience model", "customer experience"], + ["experience model", "user experience"], + ["experience model", "user experience design"], + ["mathematical diagram", "category theory"], + ["mathematical diagram", "mathematical visualization"], + ["plot (graphics)", "chart"], + ["plot (graphics)", "diagram"], + ["plot (graphics)", "graph of a function"], + ["plot (graphics)", "line chart"], + ["cartel", "corporate group"], + ["oligarchy", "netocracy"], + ["oligarchy", "oligopoly"], + ["price fixing", "oligopoly"], + ["social class", "ranked society"], + ["social class", "social stratification"], + ["graph of a function", "chart"], + ["abstract data type", "concept (generic programming)"], + ["abstract data type", "formal methods"], + ["abstract data type", "functional specification"], + ["abstract data type", "generalized algebraic data type"], + ["abstract data type", "initial algebra"], + ["abstract data type", "liskov substitution principle"], + ["abstract data type", "type theory"], + ["column (database)", "column-oriented dbms"], + ["column (database)", "column (data store)"], + ["column (database)", "distributed data store"], + ["column (database)", "row (database)"], + ["column (database)", "sql"], + ["column (database)", "query language"], + ["information graphics", "a picture is worth a thousand words"], + ["information graphics", "argument map"], + ["information graphics", "charts"], + ["information graphics", "dashboards (management information systems)"], + ["information graphics", "data presentation architecture"], + ["information graphics", "data visualization"], + ["information graphics", "edugraphic"], + ["information graphics", "graphic design"], + ["information graphics", "graphic image development"], + ["information graphics", "graphic organizer"], + ["information graphics", "information design"], + ["information graphics", "scientific visualization"], + ["information graphics", "statistical graphics"], + ["information graphics", "technical illustration"], + ["information graphics", "isotype (picture language)"], + ["information graphics", "timeline"], + ["information graphics", "visualization (graphic)"], + ["information graphics", "news illustrated"], + ["information graphics", "maestro concept"], + ["information graphics", "family tree"], + ["row (database)", "column (database)"], + ["table (database)", "relation (database)"], + ["table (database)", "row (database)"], + ["table (database)", "column (database)"], + ["table (database)", "table (information)"], + ["html element", "html attribute"], + ["html element", "html"], + ["tensor", "array data type"], + ["tensor", "cartesian tensor"], + ["tensor", "fibre bundle"], + ["tensor", "multilinear subspace learning"], + ["tensor", "one-form"], + ["tensor", "tensor product of modules"], + ["tensor", "application of tensor theory in engineering"], + ["tensor", "continuum mechanics"], + ["tensor", "covariant derivative"], + ["tensor", "curvature"], + ["tensor", "diffusion mri"], + ["tensor", "einstein field equations"], + ["tensor", "fluid mechanics"], + ["tensor", "gravity"], + ["tensor", "riemannian geometry"], + ["tensor", "structure tensor"], + ["tensor", "tensor decomposition"], + ["tensor", "tensor derivative"], + ["tensor", "tensor software"], + ["dependent and independent variables", "abscissa and ordinate"], + ["dependent and independent variables", "blocking (statistics)"], + ["dependent and independent variables", "latent variable"], + ["dependent and independent variables", "observable variable"], + ["misleading graph", "chartjunk"], + ["misleading graph", "impression management"], + ["misleading graph", "misuse of statistics"], + ["misleading graph", "simpson's paradox"], + ["misleading graph", "how to lie with statistics"], + ["comparison of research networking tools and research profiling systems", "social networking service"], + ["social network", "bibliography of sociology"], + ["social network", "blockmodeling"], + ["social network", "network theory"], + ["social network", "network science"], + ["social network", "social network analysis"], + ["social network", "social networking service"], + ["social network", "social web"], + ["data model", "core architecture data model"], + ["data model", "data dictionary"], + ["data modeling", "architectural pattern (computer science)"], + ["data modeling", "comparison of data modeling tools"], + ["data modeling", "data (computing)"], + ["data modeling", "data dictionary"], + ["data modeling", "enterprise data modeling"], + ["data modeling", "entity data model"], + ["data modeling", "information management"], + ["data modeling", "metadata modeling"], + ["data modeling", "three schema approach"], + ["data modeling", "zachman framework"], + ["entity-relationship model", "associative entity"], + ["entity-relationship model", "concept map"], + ["entity-relationship model", "database design"], + ["entity-relationship model", "data structure diagram"], + ["entity-relationship model", "enhanced entity–relationship model"], + ["entity-relationship model", "enterprise architecture framework"], + ["entity-relationship model", "entity data model"], + ["entity-relationship model", "fundamental modeling concepts"], + ["entity-relationship model", "comparison of data modeling tools"], + ["entity-relationship model", "ontology (information science)"], + ["entity-relationship model", "object-role modeling"], + ["entity-relationship model", "three schema approach"], + ["entity-relationship model", "structured entity relationship model"], + ["entity-relationship model", "schema-agnostic databases"], + ["information systems", "information management"], + ["information systems", "human–computer interaction"], + ["information systems", "informatics"], + ["information systems", "bioinformatics"], + ["information systems", "health informatics"], + ["information systems", "cheminformatics"], + ["information systems", "geoinformatics"], + ["information systems", "information science"], + ["information systems", "web science"], + ["information systems", "management information system"], + ["information systems", "library science"], + ["information systems", "data modeling"], + ["information systems", "database"], + ["information systems", "metadata"], + ["information systems", "semantic translation"], + ["information systems", "three schema approach"], + ["information systems", "enterprise information system"], + ["view model", "enterprise architecture framework"], + ["view model", "organizational architecture"], + ["view model", "zachman framework"], + ["view model", "ontology (information science)"], + ["view model", "knowledge acquisition"], + ["conceptual framework", "analogy"], + ["conceptual framework", "inquiry"], + ["conceptual framework", "conceptual model"], + ["conceptual graphs", "alphabet of human thought"], + ["conceptual graphs", "chunking (psychology)"], + ["conceptual graphs", "resource description framework"], + ["conceptual graphs", "sparql"], + ["conceptual graphs", "semantic network"], + ["object-relationship modelling", "comparison of object–relational mapping software"], + ["object-relationship modelling", "autofetch"], + ["object-relationship modelling", "common object request broker architecture"], + ["object-relationship modelling", "object database"], + ["object-relationship modelling", "object persistence"], + ["object-relationship modelling", "object–relational database"], + ["object-relationship modelling", "object–relational impedance mismatch"], + ["object-relationship modelling", "relational model"], + ["object-relationship modelling", "sql"], + ["object-relationship modelling", "java data objects"], + ["object-relationship modelling", "service data objects"], + ["object-relationship modelling", "entity framework"], + ["object-relationship modelling", "active record pattern"], + ["object-relationship modelling", "data mapper pattern"], + ["object-relationship modelling", "single table inheritance"], + ["logical data model", "dodaf"], + ["logical data model", "core architecture data model"], + ["logical data model", "database design"], + ["logical data model", "entity-relationship model"], + ["logical data model", "database schema"], + ["logical data model", "object-role modeling"], + ["physical data model", "database schema"], + ["physical data model", "logical data model"], + ["enterprise architecture framework", "architectural pattern (computer science)"], + ["enterprise architecture framework", "enterprise architecture"], + ["enterprise architecture framework", "enterprise architecture planning"], + ["cartesian product", "binary relation"], + ["logic of relatives", "charles sanders peirce's type–token distinction"], + ["logic of relatives", "continuous predicate"], + ["logic of relatives", "entitative graph"], + ["logic of relatives", "howland will forgery trial"], + ["logic of relatives", "hypostatic abstraction"], + ["logic of relatives", "laws of form"], + ["logic of relatives", "logic of information"], + ["logic of relatives", "logical machine"], + ["logic of relatives", "logical matrix"], + ["logic of relatives", "mathematical psychology"], + ["logic of relatives", "peirce triangle"], + ["logic of relatives", "peircean realism"], + ["logic of relatives", "phaneron"], + ["logic of relatives", "pragmatics"], + ["logic of relatives", "relation algebra"], + ["logic of relatives", "truth table"], + ["logic of relatives", "oliver wendell holmes jr."], + ["logic of relatives", "george herbert mead"], + ["projection (relational algebra)", "projection (set theory)"], + ["projection (set theory)", "cartesian product"], + ["projection (set theory)", "projection (relational algebra)"], + ["projection (set theory)", "projection (mathematics)"], + ["projection (set theory)", "relation (mathematics)"], + ["relation (mathematics)", "incidence structure"], + ["relation (mathematics)", "logic of relatives"], + ["relation (mathematics)", "order theory"], + ["relation algebra", "algebraic logic"], + ["relation algebra", "binary relation"], + ["relation algebra", "cartesian product"], + ["relation algebra", "extension (predicate logic)"], + ["relation algebra", "logic of relatives"], + ["relation algebra", "logical matrix"], + ["relation algebra", "relation (mathematics)"], + ["relation algebra", "relation construction"], + ["relation algebra", "relational calculus"], + ["relation algebra", "relational algebra"], + ["relation algebra", "spatial-temporal reasoning"], + ["relation algebra", "theory of relations"], + ["relation algebra", "triadic relation"], + ["relation construction", "projection (mathematics)"], + ["relation construction", "relation (mathematics)"], + ["relation construction", "relation composition"], + ["relational database", "sql"], + ["relational database", "object database"], + ["relational database", "online analytical processing"], + ["relational database", "data warehouse"], + ["relational database", "star schema"], + ["relational database", "snowflake schema"], + ["relational database", "comparison of relational database management systems"], + ["theory of relations", "incidence structure"], + ["theory of relations", "hypergraph"], + ["theory of relations", "logic of relatives"], + ["theory of relations", "logical matrix"], + ["theory of relations", "projection (set theory)"], + ["theory of relations", "relation algebra"], + ["theory of relations", "relational algebra"], + ["theory of relations", "relational model"], + ["tuple relational calculus", "relational algebra"], + ["tuple relational calculus", "relational calculus"], + ["tuple relational calculus", "domain relational calculus"], + ["sql", "object database"], + ["sql", "comparison of relational database management systems"], + ["sql", "comparison of object–relational database management systems"], + ["sql", "d (data language specification)"], + ["sql", "online analytical processing"], + ["sql", "data warehouse"], + ["sql", "hierarchical database model"], + ["sql", "star schema"], + ["sql", "snowflake schema"], + ["ontology modularization", "ontology double articulation"], + ["business process model and notation", "drakon"], + ["business process model and notation", "bpel"], + ["business process model and notation", "business process management"], + ["business process model and notation", "business process modeling"], + ["business process model and notation", "comparison of business process model and notation modeling tools"], + ["business process model and notation", "decision model and notation"], + ["business process model and notation", "cmmn"], + ["business process model and notation", "process driven messaging service"], + ["business process model and notation", "event-driven process chain"], + ["business process model and notation", "function model"], + ["business process model and notation", "functional software architecture"], + ["business process model and notation", "workflow"], + ["business process model and notation", "workflow patterns"], + ["business process model and notation", "service component architecture"], + ["business process model and notation", "xpdl"], + ["business process model and notation", "yawl"], + ["information cascade", "groupthink"], + ["information cascade", "agent-based computational economics"], + ["niam", "concept map"], + ["niam", "conceptual schema"], + ["niam", "information flow diagram"], + ["niam", "ontology double articulation"], + ["niam", "ontology engineering"], + ["niam", "relational algebra"], + ["niam", "three schema approach"], + ["system context diagram", "data flow diagram"], + ["system context diagram", "information flow diagram"], + ["system context diagram", "event partitioning"], + ["system context diagram", "computer network diagram"], + ["system context diagram", "requirements analysis"], + ["system context diagram", "software development process"], + ["system context diagram", "systems analysis"], + ["data flow diagram", "activity diagram"], + ["data flow diagram", "business process model and notation"], + ["data flow diagram", "control-flow diagram"], + ["data flow diagram", "data island"], + ["data flow diagram", "dataflow"], + ["data flow diagram", "directed acyclic graph"], + ["data flow diagram", "drakon"], + ["data flow diagram", "functional flow block diagram"], + ["data flow diagram", "function model"], + ["data flow diagram", "idef0"], + ["data flow diagram", "pipeline (software)"], + ["data flow diagram", "structured analysis and design technique"], + ["data flow diagram", "structure chart"], + ["data flow diagram", "system context diagram"], + ["data flow diagram", "value-stream mapping"], + ["data flow diagram", "workflow"], + ["software development process", "systems development life cycle"], + ["software development process", "computer-aided software engineering"], + ["software development process", "project management"], + ["software development process", "software development"], + ["business process management", "business intelligence"], + ["business process management", "business process automation"], + ["business process management", "comparison of business integration software"], + ["business process management", "enterprise planning systems"], + ["business process management", "integrated business planning"], + ["business process management", "process architecture"], + ["business process management", "total quality management"], + ["business process modeling", "business reference model"], + ["business process modeling", "function model"], + ["business process modeling", "organizational chart"], + ["business process modeling", "data model"], + ["business process modeling", "business analysis"], + ["business process modeling", "business process reengineering"], + ["business process modeling", "business process"], + ["business process modeling", "business process management"], + ["business process modeling", "management"], + ["business process modeling", "holism"], + ["event-driven process chain", "drakon"], + ["event-driven process chain", "flowchart"], + ["event-driven process chain", "petri net"], + ["event-driven process chain", "process mining"], + ["event-driven process chain", "workflow"], + ["event-driven process chain", "event chain diagram"], + ["function model", "business process modeling"], + ["function model", "data model"], + ["function model", "functional software architecture"], + ["function model", "unified modeling language"], + ["function model", "view model"], + ["workflow", "business process automation"], + ["workflow", "business process management"], + ["workflow", "business process modeling"], + ["workflow", "computer-supported collaboration"], + ["workflow", "drakon"], + ["workflow", "enterprise content management"], + ["workflow", "process architecture"], + ["workflow", "process-driven application"], + ["workflow", "workflow engine"], + ["workflow", "business process reengineering"], + ["business semantics management", "business process management"], + ["business semantics management", "conceptual schema"], + ["business semantics management", "data integration"], + ["business semantics management", "enterprise information integration"], + ["business semantics management", "master data management"], + ["business semantics management", "ontology"], + ["business semantics management", "ontology double articulation"], + ["semantic computing", "computational semantics"], + ["semantic computing", "semantic compression"], + ["semantic computing", "semantic technology"], + ["data integration", "business semantics management"], + ["data integration", "change data capture"], + ["data integration", "core data integration"], + ["data integration", "customer data integration"], + ["data integration", "cyberinfrastructure"], + ["data integration", "data blending"], + ["data integration", "data curation"], + ["data integration", "data fusion"], + ["data integration", "data mapping"], + ["data integration", "data wrangling"], + ["data integration", "database model"], + ["data integration", "dataspaces"], + ["data integration", "edge data integration"], + ["data integration", "enterprise application integration"], + ["data integration", "enterprise architecture framework"], + ["data integration", "enterprise information integration"], + ["data integration", "enterprise integration"], + ["data integration", "geodi"], + ["data integration", "information integration"], + ["data integration", "information server"], + ["data integration", "information silo"], + ["data integration", "integration competency center"], + ["data integration", "integration consortium"], + ["data integration", "jxta"], + ["data integration", "master data management"], + ["data integration", "object-relational mapping"], + ["data integration", "open text"], + ["data integration", "schema matching"], + ["data integration", "three schema approach"], + ["data integration", "udef"], + ["data integration", "web data integration"], + ["data integration", "web service"], + ["dataspaces", "data mapping"], + ["dataspaces", "data integration"], + ["dataspaces", "semantic integration"], + ["dataspaces", "information integration"], + ["enterprise integration", "architecture of interoperable information systems"], + ["enterprise integration", "integration consortium"], + ["enterprise integration", "configuration management"], + ["enterprise integration", "data integration"], + ["enterprise integration", "enterprise application integration"], + ["enterprise integration", "enterprise information integration"], + ["enterprise integration", "enterprise integration patterns"], + ["enterprise integration", "generalised enterprise reference architecture and methodology"], + ["enterprise integration", "semantic integration"], + ["enterprise integration", "semantic unification"], + ["charles sanders peirce's type–token distinction", "class (philosophy)"], + ["charles sanders peirce's type–token distinction", "type theory"], + ["hypostatic abstraction", "abstraction"], + ["hypostatic abstraction", "analogy"], + ["hypostatic abstraction", "category theory"], + ["hypostatic abstraction", "continuous predicate"], + ["peircean realism", "applied ethics"], + ["dodaf", "ideas group"], + ["dodaf", "modaf meta-model"], + ["project management", "agile construction"], + ["project management", "architectural engineering"], + ["project management", "construction management"], + ["project management", "cost engineering"], + ["project management", "facilitation (business)"], + ["project management", "industrial engineering"], + ["project management", "project production management"], + ["project management", "project management software"], + ["project management", "project portfolio management"], + ["project management", "systems engineering"], + ["project management", "collaborative project management"], + ["project management", "decision-making"], + ["project management", "game theory"], + ["project management", "earned value management"], + ["project management", "kanban (development)"], + ["project management", "operations research"], + ["project management", "process architecture"], + ["project management", "program management"], + ["project management", "project accounting"], + ["project management", "project governance"], + ["project management", "project management simulation"], + ["project management", "software development process"], + ["project management", "systems development life cycle"], + ["project management", "comparison of project management software"], + ["business process", "business analysis"], + ["business process", "business process automation"], + ["business process", "business process mapping"], + ["three circles model", "venn diagram"], + ["systems engineering", "arcadia (engineering)"], + ["systems engineering", "control engineering"], + ["systems engineering", "design review (u.s. government)"], + ["systems engineering", "engineering management"], + ["systems engineering", "enterprise systems engineering"], + ["systems engineering", "industrial engineering"], + ["systems engineering", "interdisciplinarity"], + ["systems engineering", "management cybernetics"], + ["systems engineering", "model-based systems engineering"], + ["systems engineering", "operations management"], + ["systems engineering", "structured systems analysis and design method"], + ["systems engineering", "system of systems engineering"], + ["systems engineering", "system accident"], + ["systems engineering", "systems architecture"], + ["systems engineering", "systems development life cycle"], + ["systems engineering", "systems thinking"], + ["systems engineering", "theory of constraints"], + ["systems engineering", "value-stream mapping"], + ["systems engineering", "system information modelling"], + ["industrial engineering", "industrial revolution"], + ["systems architecture", "arcadia (engineering)"], + ["systems architecture", "architectural pattern (computer science)"], + ["systems architecture", "department of defense architecture framework"], + ["systems architecture", "enterprise architecture framework"], + ["systems architecture", "enterprise information security architecture"], + ["systems architecture", "process architecture"], + ["systems architecture", "requirements analysis"], + ["systems architecture", "software architecture"], + ["systems architecture", "software engineering"], + ["systems architecture", "systems analysis"], + ["systems architecture", "systems engineering"], + ["systems development life cycle", "application lifecycle management"], + ["systems development life cycle", "decision cycle"], + ["systems development life cycle", "ipo model"], + ["systems development life cycle", "software development methodologies"], + ["value-stream mapping", "business process mapping"], + ["value-stream mapping", "lean manufacturing"], + ["value-stream mapping", "value-stream-mapping software"], + ["value-stream mapping", "value chain"], + ["value-stream mapping", "value stream"], + ["topincs", "topic maps"], + ["topincs", "rapid application development"], + ["topincs", "metamodeling"], + ["unified modeling language", "applications of uml"], + ["unified modeling language", "business process model and notation"], + ["unified modeling language", "c4 model (software)"], + ["unified modeling language", "model-based testing"], + ["unified modeling language", "model-driven engineering"], + ["unified modeling language", "object oriented role analysis and modeling"], + ["unified modeling language", "systems modeling language"], + ["unified modeling language", "dodaf"], + ["unified modeling language", "modaf meta-model"], + ["applications of uml", "unified modeling language"], + ["c4 model (software)", "software architecture"], + ["model-based testing", "domain-specific language"], + ["model-based testing", "domain-specific modeling"], + ["model-based testing", "model-driven architecture"], + ["model-based testing", "model-driven engineering"], + ["model-driven engineering", "application lifecycle management"], + ["model-driven engineering", "business process model and notation"], + ["model-driven engineering", "business-driven development"], + ["model-driven engineering", "domain-specific language"], + ["model-driven engineering", "domain-specific modeling"], + ["model-driven engineering", "language-oriented programming"], + ["model-driven engineering", "qvt"], + ["model-driven engineering", "model-based testing"], + ["model-driven engineering", "model-based systems engineering"], + ["object oriented role analysis and modeling", "view model"], + ["object oriented role analysis and modeling", "unified modeling language"], + ["systems modeling language", "object process methodology"], + ["rapid application development", "flow-based programming"], + ["rapid application development", "lean software development"], + ["metamodeling", "business reference model"], + ["metamodeling", "data governance"], + ["metamodeling", "model-driven engineering"], + ["metamodeling", "model-driven architecture"], + ["metamodeling", "domain-specific modeling"], + ["metamodeling", "metadata"], + ["metamodeling", "computer-aided software engineering"], + ["metamodeling", "method engineering"], + ["metamodeling", "modaf meta-model"], + ["metamodeling", "qvt"], + ["metamodeling", "object process methodology"], + ["metamodeling", "requirements analysis"], + ["metamodeling", "space mapping"], + ["udef", "data integration"], + ["udef", "iso/iec 11179"], + ["udef", "national information exchange model"], + ["udef", "metadata"], + ["udef", "semantic web"], + ["udef", "representation term"], + ["udef", "controlled vocabulary"], + ["change data capture", "slowly changing dimension"], + ["core data integration", "data integration"], + ["core data integration", "edge data integration"], + ["customer data integration", "business semantics management"], + ["customer data integration", "change data capture"], + ["customer data integration", "core data integration"], + ["customer data integration", "cyberinfrastructure"], + ["customer data integration", "data blending"], + ["customer data integration", "data curation"], + ["customer data integration", "data fusion"], + ["customer data integration", "data mapping"], + ["customer data integration", "data wrangling"], + ["customer data integration", "database model"], + ["customer data integration", "dataspaces"], + ["customer data integration", "edge data integration"], + ["customer data integration", "enterprise application integration"], + ["customer data integration", "enterprise architecture framework"], + ["customer data integration", "enterprise information integration"], + ["customer data integration", "enterprise integration"], + ["customer data integration", "geodi"], + ["customer data integration", "information integration"], + ["customer data integration", "information server"], + ["customer data integration", "information silo"], + ["customer data integration", "integration competency center"], + ["customer data integration", "integration consortium"], + ["customer data integration", "jxta"], + ["customer data integration", "master data management"], + ["customer data integration", "object-relational mapping"], + ["customer data integration", "open text"], + ["customer data integration", "schema matching"], + ["customer data integration", "three schema approach"], + ["customer data integration", "udef"], + ["customer data integration", "web data integration"], + ["customer data integration", "web service"], + ["data blending", "data preparation"], + ["data blending", "data fusion"], + ["data blending", "data wrangling"], + ["data blending", "data cleansing"], + ["data blending", "data editing"], + ["data blending", "data curation"], + ["data curation", "data wrangling"], + ["data fusion", "data assimilation"], + ["data fusion", "image fusion"], + ["data fusion", "information integration"], + ["data fusion", "sensor fusion"], + ["data mapping", "data integration"], + ["data mapping", "data wrangling"], + ["data mapping", "iso/iec 11179"], + ["data mapping", "metadata"], + ["data mapping", "schema matching"], + ["data mapping", "semantic heterogeneity"], + ["data mapping", "semantic mapper"], + ["data mapping", "semantic translation"], + ["data mapping", "semantic web"], + ["data mapping", "semantics"], + ["data wrangling", "data preparation"], + ["database model", "database design"], + ["edge data integration", "core data integration"], + ["edge data integration", "web 2.0"], + ["enterprise application integration", "enterprise architecture framework"], + ["enterprise application integration", "business semantics management"], + ["enterprise application integration", "data integration"], + ["enterprise application integration", "enterprise information integration"], + ["enterprise application integration", "enterprise integration"], + ["enterprise application integration", "enterprise integration patterns"], + ["enterprise application integration", "generalised enterprise reference architecture and methodology"], + ["enterprise application integration", "integration competency center"], + ["enterprise application integration", "health level 7"], + ["enterprise information integration", "business intelligence 2.0"], + ["enterprise information integration", "data warehouse"], + ["enterprise information integration", "enterprise integration"], + ["enterprise information integration", "federated database system"], + ["enterprise information integration", "resource description framework"], + ["enterprise information integration", "semantic heterogeneity"], + ["enterprise information integration", "semantic integration"], + ["enterprise information integration", "semantic web"], + ["enterprise information integration", "web 2.0"], + ["information integration", "data fusion"], + ["information integration", "sensor fusion"], + ["information integration", "data integration"], + ["information integration", "image fusion"], + ["jxta", "peer-to-peer"], + ["master data management", "business semantics management"], + ["master data management", "customer data integration"], + ["master data management", "data governance"], + ["master data management", "data integration"], + ["master data management", "data visualization"], + ["master data management", "enterprise information integration"], + ["master data management", "information management"], + ["master data management", "linked data"], + ["master data management", "record linkage"], + ["master data management", "semantic web"], + ["master data management", "web data integration"], + ["object-relational mapping", "comparison of object–relational mapping software"], + ["object-relational mapping", "autofetch"], + ["object-relational mapping", "common object request broker architecture"], + ["object-relational mapping", "object database"], + ["object-relational mapping", "object persistence"], + ["object-relational mapping", "object–relational database"], + ["object-relational mapping", "object–relational impedance mismatch"], + ["object-relational mapping", "relational model"], + ["object-relational mapping", "sql"], + ["object-relational mapping", "java data objects"], + ["object-relational mapping", "service data objects"], + ["object-relational mapping", "entity framework"], + ["object-relational mapping", "active record pattern"], + ["object-relational mapping", "data mapper pattern"], + ["object-relational mapping", "single table inheritance"], + ["schema matching", "data integration"], + ["schema matching", "dataspaces"], + ["schema matching", "federated database system"], + ["schema matching", "minimal mappings"], + ["schema matching", "ontology alignment"], + ["web service", "middleware"], + ["structured english", "natural language programming"], + ["structured english", "self-documenting code"], + ["structured english", "structured programming"], + ["structured english", "pseudocode"], + ["structured english", "decision tree"], + ["structured english", "decision table"], + ["structured english", "attempto controlled english"], + ["control-flow graph", "abstract syntax tree"], + ["control-flow graph", "flowchart"], + ["control-flow graph", "control-flow diagram"], + ["control-flow graph", "control-flow analysis"], + ["control-flow graph", "data-flow analysis"], + ["control-flow graph", "interval (graph theory)"], + ["control-flow graph", "cyclomatic complexity"], + ["control-flow graph", "compiler construction"], + ["control-flow graph", "intermediate representation"], + ["heat map", "false color"], + ["contingency table", "confusion matrix"], + ["contingency table", "pivot table"], + ["contingency table", "iterative proportional fitting"], + ["contingency table", "multivariate statistics"], + ["contingency table", "olap cube"], + ["abscissa and ordinate", "dependent and independent variables"], + ["abscissa and ordinate", "relation (mathematics)"], + ["abscissa and ordinate", "line chart"], + ["blocking (statistics)", "combinatorial design"], + ["blocking (statistics)", "dependent and independent variables"], + ["blocking (statistics)", "blockmodeling"], + ["latent variable", "dependent and independent variables"], + ["latent variable", "latent variable model"], + ["latent variable", "partial least squares path modeling"], + ["latent variable", "partial least squares regression"], + ["latent variable", "structural equation modeling"], + ["observable variable", "latent variable model"], + ["cartesian tensor", "tensor calculus"], + ["fibre bundle", "principal bundle"], + ["fibre bundle", "vector bundle"], + ["one-form", "tensor"], + ["continuum mechanics", "bernoulli's principle"], + ["continuum mechanics", "tensor calculus"], + ["continuum mechanics", "tensor derivative (continuum mechanics)"], + ["covariant derivative", "affine connection"], + ["covariant derivative", "christoffel symbols"], + ["covariant derivative", "connection (algebraic framework)"], + ["covariant derivative", "connection (mathematics)"], + ["covariant derivative", "connection (vector bundle)"], + ["covariant derivative", "connection form"], + ["covariant derivative", "exterior covariant derivative"], + ["covariant derivative", "gauge covariant derivative"], + ["covariant derivative", "introduction to the mathematics of general relativity"], + ["covariant derivative", "levi-civita connection"], + ["covariant derivative", "parallel transport"], + ["covariant derivative", "ricci calculus"], + ["covariant derivative", "tensor derivative (continuum mechanics)"], + ["curvature", "vector bundle"], + ["curvature", "principal bundle"], + ["curvature", "connection (mathematics)"], + ["curvature", "principle of least action"], + ["diffusion mri", "connectome"], + ["einstein field equations", "ricci calculus"], + ["fluid mechanics", "bernoulli's principle"], + ["riemannian geometry", "systolic geometry"], + ["structure tensor", "tensor"], + ["tensor derivative", "affine connection"], + ["tensor derivative", "christoffel symbols"], + ["tensor derivative", "connection (algebraic framework)"], + ["tensor derivative", "connection (mathematics)"], + ["tensor derivative", "connection (vector bundle)"], + ["tensor derivative", "connection form"], + ["tensor derivative", "exterior covariant derivative"], + ["tensor derivative", "gauge covariant derivative"], + ["tensor derivative", "introduction to the mathematics of general relativity"], + ["tensor derivative", "levi-civita connection"], + ["tensor derivative", "parallel transport"], + ["tensor derivative", "ricci calculus"], + ["tensor derivative", "tensor derivative (continuum mechanics)"], + ["html attribute", "html element"], + ["column-oriented dbms", "data warehouse"], + ["distributed data store", "data store"], + ["distributed data store", "peer-to-peer"], + ["formal methods", "abstract interpretation"], + ["formal methods", "model checking"], + ["formal methods", "software engineering"], + ["functional specification", "benchmarking"], + ["functional specification", "software development process"], + ["functional specification", "specification (technical standard)"], + ["type theory", "domain theory"], + ["type theory", "type (model theory)"], + ["complex event processing", "event stream processing"], + ["complex event processing", "operational intelligence"], + ["complex event processing", "pattern matching"], + ["complex event processing", "real-time business intelligence"], + ["complex event processing", "real-time computing"], + ["pivot table", "business reporting"], + ["pivot table", "comparison of office suites"], + ["pivot table", "comparison of olap servers"], + ["pivot table", "contingency table"], + ["pivot table", "data drilling"], + ["pivot table", "data mining"], + ["pivot table", "data visualization"], + ["pivot table", "data warehouse"], + ["pivot table", "olap cube"], + ["pivot table", "relational algebra"], + ["iterative proportional fitting", "data cleansing"], + ["iterative proportional fitting", "data editing"], + ["olap cube", "business intelligence"], + ["olap cube", "comparison of olap servers"], + ["olap cube", "data mining"], + ["statistical interference", "probabilistic design"], + ["statistical interference", "process capability"], + ["statistical interference", "reliability engineering"], + ["statistical interference", "tolerance (engineering)"], + ["chartjunk", "misleading graph"], + ["chartjunk", "lexicography"], + ["misuse of statistics", "deception"], + ["misuse of statistics", "misleading graph"], + ["misuse of statistics", "post hoc analysis"], + ["misuse of statistics", "simpson's paradox"], + ["anscombe's quartet", "exploratory data analysis"], + ["anscombe's quartet", "goodness of fit"], + ["anscombe's quartet", "simpson's paradox"], + ["anscombe's quartet", "statistical model validation"], + ["data dredging", "aliasing"], + ["data dredging", "misuse of statistics"], + ["data dredging", "overfitting"], + ["data dredging", "post hoc analysis"], + ["data dredging", "predictive analytics"], + ["curve fitting", "estimation theory"], + ["curve fitting", "function approximation"], + ["curve fitting", "goodness of fit"], + ["curve fitting", "levenberg–marquardt algorithm"], + ["curve fitting", "line fitting"], + ["curve fitting", "nonlinear regression"], + ["curve fitting", "overfitting"], + ["curve fitting", "plane curve"], + ["curve fitting", "distribution fitting"], + ["curve fitting", "smoothing"], + ["curve fitting", "interpolating spline"], + ["curve fitting", "smoothing spline"], + ["curve fitting", "time series"], + ["curve fitting", "total least squares"], + ["curve fitting", "trend estimation"], + ["estimation theory", "expectation-maximization algorithm"], + ["estimation theory", "grey box model"], + ["estimation theory", "information theory"], + ["estimation theory", "maximum entropy spectral estimation"], + ["estimation theory", "pareto principle"], + ["estimation theory", "statistical signal processing"], + ["function approximation", "fitness approximation"], + ["function approximation", "radial basis function network"], + ["goodness of fit", "generalized linear model"], + ["goodness of fit", "overfitting"], + ["goodness of fit", "statistical model validation"], + ["line fitting", "regression dilution"], + ["nonlinear regression", "curve fitting"], + ["nonlinear regression", "generalized linear model"], + ["nonlinear regression", "local regression"], + ["overfitting", "curve fitting"], + ["overfitting", "data dredging"], + ["overfitting", "goodness of fit"], + ["overfitting", "model selection"], + ["overfitting", "occam's razor"], + ["distribution fitting", "curve fitting"], + ["distribution fitting", "density estimation"], + ["distribution fitting", "mixture distribution"], + ["distribution fitting", "product distribution"], + ["smoothing", "convolution"], + ["smoothing", "curve fitting"], + ["smoothing", "discretization"], + ["smoothing", "scale space"], + ["smoothing", "smoothing spline"], + ["smoothing", "statistical signal processing"], + ["interpolating spline", "smoothing spline"], + ["trend estimation", "forecasting"], + ["trend estimation", "line fitting"], + ["trend estimation", "regression analysis"], + ["hyperspectral imaging", "sensor fusion"], + ["enhanced metafile format", "postscript"], + ["enhanced metafile format", "vector markup language"], + ["enhanced metafile format", "scalable vector graphics"], + ["ms powerpoint", "powerpoint karaoke"], + ["ms powerpoint", "web-based slideshow"], + ["data binning", "histogram"], + ["data binning", "grouped data"], + ["data binning", "level of measurement"], + ["data binning", "quantization (signal processing)"], + ["data binning", "discretization of continuous features"], + ["kernel density estimation", "kernel (statistics)"], + ["kernel density estimation", "kernel smoothing"], + ["kernel density estimation", "kernel regression"], + ["kernel density estimation", "density estimation"], + ["kernel density estimation", "mean-shift"], + ["kernel density estimation", "scale space"], + ["kernel density estimation", "multivariate kernel density estimation"], + ["kernel density estimation", "variable kernel density estimation"], + ["image histogram", "curve (tonality)"], + ["image histogram", "histogram equalization"], + ["image histogram", "histogram matching"], + ["image histogram", "image editing"], + ["cumulative distribution function", "descriptive statistics"], + ["cumulative distribution function", "distribution fitting"], + ["pareto analysis", "pareto distribution"], + ["pareto analysis", "pareto chart"], + ["pareto analysis", "pareto interpolation"], + ["pareto analysis", "ishikawa diagram"], + ["pareto principle", "1% rule (internet culture)"], + ["pareto principle", "10/90 gap"], + ["pareto principle", "benford's law"], + ["pareto principle", "diminishing returns"], + ["pareto principle", "elephant flow"], + ["pareto principle", "keystone species"], + ["pareto principle", "long tail"], + ["pareto principle", "matthew effect"], + ["pareto principle", "mathematical economics"], + ["pareto principle", "megadiverse countries"], + ["pareto principle", "ninety-ninety rule"], + ["pareto principle", "pareto distribution"], + ["pareto principle", "parkinson's law"], + ["pareto principle", "derek j. de solla price"], + ["pareto principle", "principle of least effort"], + ["pareto principle", "profit risk"], + ["pareto principle", "rank-size distribution"], + ["pareto principle", "sturgeon's law"], + ["pareto principle", "vitality curve"], + ["pareto principle", "wealth concentration"], + ["pareto principle", "zipf's law"], + ["statistical quality control", "distribution-free control chart"], + ["statistical quality control", "process capability index"], + ["statistical quality control", "quality assurance"], + ["statistical quality control", "industrial engineering"], + ["statistical quality control", "anova gauge r&r"], + ["statistical quality control", "stochastic control"], + ["statistical quality control", "electronic design automation"], + ["statistical quality control", "process window index"], + ["statistical quality control", "reliability engineering"], + ["statistical quality control", "six sigma"], + ["statistical quality control", "total quality management"], + ["curve (tonality)", "image histogram"], + ["histogram equalization", "histogram matching"], + ["histogram matching", "histogram equalization"], + ["histogram matching", "image histogram"], + ["image editing", "computer graphics"], + ["image editing", "image processing"], + ["kernel (statistics)", "kernel density estimation"], + ["kernel (statistics)", "kernel smoother"], + ["kernel (statistics)", "density estimation"], + ["kernel (statistics)", "multivariate kernel density estimation"], + ["kernel smoothing", "kernel density estimation"], + ["kernel smoothing", "local regression"], + ["kernel smoothing", "kernel regression"], + ["kernel regression", "kernel smoother"], + ["kernel regression", "local regression"], + ["mean-shift", "optics algorithm"], + ["mean-shift", "kernel density estimation"], + ["mean-shift", "kernel (statistics)"], + ["multivariate kernel density estimation", "kernel density estimation"], + ["multivariate kernel density estimation", "variable kernel density estimation"], + ["generative model", "graphical model"], + ["order statistic", "box plot"], + ["order statistic", "rank-size distribution"], + ["order statistic", "quantile"], + ["order statistic", "descriptive statistics"], + ["probability distribution fitting", "curve fitting"], + ["probability distribution fitting", "density estimation"], + ["probability distribution fitting", "mixture distribution"], + ["probability distribution fitting", "product distribution"], + ["grouped data", "aggregate data"], + ["grouped data", "data binning"], + ["grouped data", "level of measurement"], + ["grouped data", "discretization of continuous features"], + ["level of measurement", "set theory"], + ["quantization (signal processing)", "data binning"], + ["quantization (signal processing)", "discretization"], + ["quantization (signal processing)", "quantile"], + ["quantization (signal processing)", "regression dilution"], + ["discretization of continuous features", "density estimation"], + ["rank-size distribution", "pareto principle"], + ["rank-size distribution", "long tail"], + ["process capability index", "process (engineering)"], + ["process capability index", "process capability"], + ["quality assurance", "quality management system"], + ["quality assurance", "software testing"], + ["quality assurance", "verification and validation"], + ["stochastic control", "stochastic process"], + ["stochastic control", "control theory"], + ["electronic design automation", "computer-aided design"], + ["total quality management", "capability maturity model integration"], + ["total quality management", "lean manufacturing"], + ["total quality management", "malcolm baldrige national quality award"], + ["total quality management", "people capability maturity model"], + ["total quality management", "zero defects"], + ["1% rule (internet culture)", "netocracy"], + ["1% rule (internet culture)", "sturgeon's law"], + ["10/90 gap", "pareto principle"], + ["10/90 gap", "economic inequality"], + ["benford's law", "predictive analytics"], + ["benford's law", "zipf's law"], + ["diminishing returns", "liebig's law of the minimum"], + ["diminishing returns", "pareto efficiency"], + ["diminishing returns", "teamwork"], + ["elephant flow", "pareto principle"], + ["long tail", "swarm intelligence"], + ["matthew effect", "attention inequality"], + ["matthew effect", "lindy effect"], + ["matthew effect", "metcalfe's law"], + ["matthew effect", "pareto distribution"], + ["matthew effect", "positive feedback"], + ["matthew effect", "preferential attachment"], + ["matthew effect", "social network analysis"], + ["matthew effect", "virtuous circle and vicious circle"], + ["matthew effect", "wealth concentration"], + ["mathematical economics", "econophysics"], + ["ninety-ninety rule", "hofstadter's law"], + ["ninety-ninety rule", "lindy effect"], + ["ninety-ninety rule", "pareto principle"], + ["pareto distribution", "bradford's law"], + ["pareto distribution", "matthew effect"], + ["pareto distribution", "pareto analysis"], + ["pareto distribution", "pareto efficiency"], + ["pareto distribution", "pareto interpolation"], + ["pareto distribution", "sturgeon's law"], + ["pareto distribution", "zipf's law"], + ["parkinson's law", "hofstadter's law"], + ["principle of least effort", "principle of least action"], + ["principle of least effort", "pareto principle"], + ["principle of least effort", "occam's razor"], + ["principle of least effort", "preferential attachment"], + ["profit risk", "pareto principle"], + ["profit risk", "risk management"], + ["sturgeon's law", "pareto distribution"], + ["sturgeon's law", "pareto principle"], + ["wealth concentration", "economic inequality"], + ["zipf's law", "1% rule (internet culture)"], + ["zipf's law", "benford's law"], + ["zipf's law", "bradford's law"], + ["zipf's law", "pareto distribution"], + ["zipf's law", "pareto principle"], + ["zipf's law", "principle of least effort"], + ["zipf's law", "rank-size distribution"], + ["zipf's law", "long tail"], + ["common cause and special cause", "corrective and preventive action"], + ["common cause and special cause", "nuclear safety"], + ["common cause and special cause", "probabilistic risk assessment"], + ["common cause and special cause", "statistical process control"], + ["w. edwards deming", "analytic and enumerative statistical studies"], + ["w. edwards deming", "common cause and special cause"], + ["w. edwards deming", "continual improvement process"], + ["w. edwards deming", "epistemology"], + ["w. edwards deming", "joseph m. juran"], + ["w. edwards deming", "kaizen"], + ["w. edwards deming", "maestro concept"], + ["w. edwards deming", "shewhart cycle"], + ["w. edwards deming", "toyota production system"], + ["process capability", "process (engineering)"], + ["process capability", "control chart"], + ["process capability", "corrective and preventative action"], + ["process capability", "kurtosis"], + ["process capability", "normal distribution"], + ["process capability", "six sigma"], + ["process capability", "statistical interference"], + ["process capability", "statistical process control"], + ["process capability", "tolerance (engineering)"], + ["statistical process control", "distribution-free control chart"], + ["statistical process control", "process capability index"], + ["statistical process control", "quality assurance"], + ["statistical process control", "industrial engineering"], + ["statistical process control", "anova gauge r&r"], + ["statistical process control", "stochastic control"], + ["statistical process control", "electronic design automation"], + ["statistical process control", "process window index"], + ["statistical process control", "reliability engineering"], + ["statistical process control", "six sigma"], + ["statistical process control", "total quality management"], + ["vector markup language", "scalable vector graphics"], + ["scalable vector graphics", "computer graphics"], + ["bar graph", "mw:extension:easytimeline"], + ["bar graph", "enhanced metafile format"], + ["bar graph", "ms powerpoint"], + ["bar graph", "histogram"], + ["bar graph", "misleading graph"], + ["float (project management)", "critical path method"], + ["gantt chart", "critical path method"], + ["gantt chart", "event chain methodology"], + ["gantt chart", "float (project management)"], + ["gantt chart", "program evaluation and review technique"], + ["gantt chart", "event chain diagram"], + ["project planning", "cost overrun"], + ["project planning", "enterprise resource planning"], + ["project planning", "megaproject"], + ["project planning", "operations research"], + ["project planning", "prince2"], + ["project planning", "project management institute"], + ["project planning", "project plan"], + ["project planning", "project stakeholders"], + ["project planning", "scope creep"], + ["program evaluation and review technique", "activity diagram"], + ["program evaluation and review technique", "arrow diagramming method"], + ["program evaluation and review technique", "critical chain project management"], + ["program evaluation and review technique", "critical path method"], + ["program evaluation and review technique", "float (project management)"], + ["program evaluation and review technique", "gantt chart"], + ["program evaluation and review technique", "precedence diagram method"], + ["program evaluation and review technique", "project network"], + ["program evaluation and review technique", "project management"], + ["program evaluation and review technique", "project planning"], + ["program evaluation and review technique", "triangular distribution"], + ["program evaluation and review technique", "prince2"], + ["activity diagram", "business process modeling notation"], + ["activity diagram", "control-flow graph"], + ["activity diagram", "data flow diagram"], + ["activity diagram", "drakon"], + ["activity diagram", "event-driven process chain"], + ["activity diagram", "pseudocode"], + ["activity diagram", "state diagram"], + ["activity diagram", "flowchart"], + ["arrow diagramming method", "precedence diagram method"], + ["arrow diagramming method", "program evaluation and review technique"], + ["critical chain project management", "theory of constraints"], + ["critical chain project management", "event chain methodology"], + ["critical path method", "gantt chart"], + ["critical path method", "program evaluation and review technique"], + ["critical path method", "critical chain project management"], + ["critical path method", "liebig's law of the minimum"], + ["critical path method", "project management"], + ["critical path method", "project planning"], + ["critical path method", "work breakdown structure"], + ["project network", "bar chart"], + ["project network", "float (project management)"], + ["project network", "gantt chart"], + ["project network", "project management"], + ["project network", "project planning"], + ["project network", "program evaluation and review technique"], + ["triangular distribution", "three-point estimation"], + ["triangular distribution", "five-number summary"], + ["triangular distribution", "seven-number summary"], + ["triangular distribution", "bates distribution"], + ["prince2", "comparison of project-management software"], + ["prince2", "gantt chart"], + ["prince2", "work breakdown structure"], + ["enterprise resource planning", "business process management"], + ["megaproject", "reference class forecasting"], + ["megaproject", "optimism bias"], + ["project plan", "project planning"], + ["scope creep", "anti-pattern"], + ["scope creep", "cost overrun"], + ["architectural engineering", "building officials"], + ["architectural engineering", "civil engineering"], + ["architectural engineering", "construction engineering"], + ["architectural engineering", "international building code"], + ["construction management", "architectural engineering"], + ["construction management", "building officials"], + ["construction management", "civil engineering"], + ["construction management", "construction engineering"], + ["construction management", "construction estimating software"], + ["construction management", "cost overrun"], + ["construction management", "cost engineering"], + ["construction management", "international building code"], + ["construction management", "work breakdown structure"], + ["cost engineering", "construction management"], + ["cost engineering", "construction estimating software"], + ["cost engineering", "cost overrun"], + ["cost engineering", "optimism bias"], + ["cost engineering", "project management"], + ["cost engineering", "reference class forecasting"], + ["project management software", "calendaring software"], + ["project management software", "comparison of project-management software"], + ["project management software", "comparison of development estimation software"], + ["project management software", "construction collaboration technology"], + ["project management software", "program evaluation and review technique"], + ["project management software", "project accounting"], + ["project management software", "project management simulation"], + ["project management software", "project planning"], + ["project management software", "project portfolio management"], + ["project management software", "workflow management system"], + ["project portfolio management", "comparison of project-management software"], + ["project portfolio management", "project management"], + ["project portfolio management", "project management software"], + ["project portfolio management", "project management simulation"], + ["collaborative project management", "project management"], + ["collaborative project management", "learning agenda"], + ["collaborative project management", "teamwork"], + ["earned value management", "critical chain project management"], + ["kanban (development)", "lean software development"], + ["process architecture", "complex system"], + ["process architecture", "enterprise information security architecture"], + ["process architecture", "flowchart"], + ["process architecture", "information architecture"], + ["process architecture", "method engineering"], + ["process architecture", "petri net"], + ["process architecture", "process calculus"], + ["process architecture", "process engineering"], + ["process architecture", "process management"], + ["process architecture", "process modeling"], + ["process architecture", "process theory"], + ["process architecture", "system of systems"], + ["process architecture", "systems architecture"], + ["process architecture", "systems theory"], + ["process architecture", "workflow"], + ["program management", "cost overrun"], + ["program management", "project management institute"], + ["program management", "systems engineering"], + ["program management", "comparison of project management software"], + ["project accounting", "project management"], + ["project accounting", "project management software"], + ["project accounting", "project manager"], + ["project governance", "cost overrun"], + ["project management simulation", "project management"], + ["project management simulation", "project manager"], + ["comparison of project management software", "kanban (development)"], + ["comparison of project management software", "project management"], + ["comparison of project management software", "project planning"], + ["comparison of project management software", "comparison of development estimation software"], + ["comparison of project management software", "comparison of crm systems"], + ["event chain methodology", "program evaluation and review technique"], + ["event chain methodology", "project management"], + ["event chain methodology", "project planning"], + ["event chain methodology", "work breakdown structure"], + ["event chain diagram", "gantt chart"], + ["event chain diagram", "run chart"], + ["enterprise information security architecture", "enterprise architecture"], + ["enterprise information security architecture", "enterprise architecture planning"], + ["process engineering", "industrial engineering"], + ["process modeling", "model selection"], + ["process modeling", "process architecture"], + ["process modeling", "process calculus"], + ["process modeling", "process ontology"], + ["process theory", "process architecture"], + ["system of systems", "model-based systems engineering"], + ["system of systems", "enterprise systems engineering"], + ["system of systems", "complex adaptive system"], + ["system of systems", "systems architecture"], + ["system of systems", "process architecture"], + ["system of systems", "software architecture"], + ["system of systems", "enterprise architecture"], + ["system of systems", "department of defense architecture framework"], + ["three-point estimation", "five-number summary"], + ["three-point estimation", "seven-number summary"], + ["three-point estimation", "program evaluation and review technique"], + ["five-number summary", "seven-number summary"], + ["five-number summary", "three-point estimation"], + ["five-number summary", "box plot"], + ["seven-number summary", "three-point estimation"], + ["seven-number summary", "stanine"], + ["business process modeling notation", "drakon"], + ["business process modeling notation", "bpel"], + ["business process modeling notation", "business process management"], + ["business process modeling notation", "business process modeling"], + ["business process modeling notation", "comparison of business process model and notation modeling tools"], + ["business process modeling notation", "decision model and notation"], + ["business process modeling notation", "cmmn"], + ["business process modeling notation", "process driven messaging service"], + ["business process modeling notation", "event-driven process chain"], + ["business process modeling notation", "function model"], + ["business process modeling notation", "functional software architecture"], + ["business process modeling notation", "workflow"], + ["business process modeling notation", "workflow patterns"], + ["business process modeling notation", "service component architecture"], + ["business process modeling notation", "xpdl"], + ["business process modeling notation", "yawl"], + ["pseudocode", "drakon"], + ["pseudocode", "flowchart"], + ["pseudocode", "literate programming"], + ["pseudocode", "program design language"], + ["pseudocode", "short code"], + ["pseudocode", "structured english"], + ["state diagram", "david harel"], + ["state diagram", "drakon"], + ["state diagram", "scxml"], + ["state diagram", "uml state machine"], + ["capability maturity model integration", "capability immaturity model"], + ["capability maturity model integration", "capability maturity model"], + ["capability maturity model integration", "people capability maturity model"], + ["lean manufacturing", "a3 problem solving"], + ["lean manufacturing", "industrial engineering"], + ["lean manufacturing", "ishikawa diagram"], + ["lean manufacturing", "operations management"], + ["lean manufacturing", "ovsiankina effect"], + ["lean manufacturing", "poka-yoke"], + ["lean manufacturing", "production flow analysis"], + ["lean manufacturing", "six sigma"], + ["lean manufacturing", "theory of constraints"], + ["lean manufacturing", "total productive maintenance"], + ["lean manufacturing", "total quality management"], + ["malcolm baldrige national quality award", "total quality management"], + ["people capability maturity model", "capability maturity model"], + ["people capability maturity model", "capability immaturity model"], + ["people capability maturity model", "capability maturity model integration"], + ["zero defects", "six sigma"], + ["zero defects", "total quality management"], + ["corrective and preventative action", "eight disciplines problem solving"], + ["corrective and preventative action", "good documentation practice"], + ["corrective and preventative action", "good automated manufacturing practice"], + ["kurtosis", "maximum entropy probability distribution"], + ["normal distribution", "bates distribution"], + ["normal distribution", "convolution"], + ["tolerance (engineering)", "probabilistic design"], + ["tolerance (engineering)", "process capability"], + ["tolerance (engineering)", "specification (technical standard)"], + ["tolerance (engineering)", "statistical process control"], + ["tolerance (engineering)", "verification and validation"], + ["continual improvement process", "benchmarking"], + ["continual improvement process", "lean manufacturing"], + ["continual improvement process", "training within industry"], + ["kaizen", "kanban (development)"], + ["kaizen", "six sigma"], + ["kaizen", "statistical process control"], + ["kaizen", "theory of constraints"], + ["kaizen", "total productive maintenance"], + ["kaizen", "triz"], + ["shewhart cycle", "decision cycle"], + ["shewhart cycle", "lean manufacturing"], + ["shewhart cycle", "learning cycle"], + ["shewhart cycle", "ooda loop"], + ["shewhart cycle", "six sigma"], + ["shewhart cycle", "theory of constraints"], + ["shewhart cycle", "software development process"], + ["shewhart cycle", "intelligence cycle"], + ["toyota production system", "w. edwards deming"], + ["toyota production system", "training within industry"], + ["toyota production system", "production flow analysis"], + ["probabilistic risk assessment", "comparison of risk analysis microsoft excel add-ins"], + ["probabilistic risk assessment", "reference class forecasting"], + ["probabilistic risk assessment", "risk assessment"], + ["probabilistic risk assessment", "risk management tools"], + ["comparison of risk analysis microsoft excel add-ins", "spreadsheet"], + ["comparison of risk analysis microsoft excel add-ins", "probability"], + ["comparison of risk analysis microsoft excel add-ins", "plug-in (computing)"], + ["fan chart (statistics)", "box plot"], + ["functional boxplot", "box plot"], + ["functional boxplot", "bagplot"], + ["control-flow diagram", "data-flow diagram"], + ["control-flow diagram", "control-flow graph"], + ["control-flow diagram", "drakon"], + ["control-flow diagram", "flow process chart"], + ["deployment flowchart", "business process"], + ["flow map", "flow diagram"], + ["flow map", "thematic map"], + ["functional flow block diagram", "activity diagram"], + ["functional flow block diagram", "block diagram"], + ["functional flow block diagram", "business process mapping"], + ["functional flow block diagram", "dataflow"], + ["functional flow block diagram", "drakon"], + ["functional flow block diagram", "flow diagram"], + ["functional flow block diagram", "flow process chart"], + ["functional flow block diagram", "function model"], + ["functional flow block diagram", "functional block diagram"], + ["functional flow block diagram", "idef0"], + ["functional flow block diagram", "n2 chart"], + ["functional flow block diagram", "structured analysis and design technique"], + ["functional flow block diagram", "signal flow"], + ["functional flow block diagram", "signal-flow graph"], + ["nassi–shneiderman diagram", "drakon"], + ["nassi–shneiderman diagram", "flowchart"], + ["nassi–shneiderman diagram", "pseudocode"], + ["warnier/orr diagram", "structure chart"], + ["warnier/orr diagram", "structured design"], + ["warnier/orr diagram", "structured programming"], + ["augmented transition network", "context free language"], + ["augmented transition network", "finite state machine"], + ["augmented transition network", "formal grammar"], + ["augmented transition network", "parsing"], + ["augmented transition network", "recursive transition network"], + ["business process mapping", "business model canvas"], + ["business process mapping", "business process discovery"], + ["business process mapping", "business process modeling"], + ["business process mapping", "drakon"], + ["business process mapping", "ethnography"], + ["business process mapping", "n2 chart"], + ["business process mapping", "organizational studies"], + ["business process mapping", "process-centered design"], + ["business process mapping", "structured analysis and design technique"], + ["business process mapping", "systems engineering"], + ["business process mapping", "value stream mapping"], + ["business process mapping", "workflow"], + ["recursive transition network", "syntax diagram"], + ["recursive transition network", "computational linguistics"], + ["recursive transition network", "context free language"], + ["recursive transition network", "finite state machine"], + ["recursive transition network", "formal grammar"], + ["recursive transition network", "parse tree"], + ["recursive transition network", "parsing"], + ["recursive transition network", "augmented transition network"], + ["charles sanders peirce", "charles sanders peirce's type–token distinction"], + ["charles sanders peirce", "continuous predicate"], + ["charles sanders peirce", "entitative graph"], + ["charles sanders peirce", "howland will forgery trial"], + ["charles sanders peirce", "hypostatic abstraction"], + ["charles sanders peirce", "laws of form"], + ["charles sanders peirce", "logic of information"], + ["charles sanders peirce", "logical machine"], + ["charles sanders peirce", "logical matrix"], + ["charles sanders peirce", "mathematical psychology"], + ["charles sanders peirce", "peirce triangle"], + ["charles sanders peirce", "peircean realism"], + ["charles sanders peirce", "phaneron"], + ["charles sanders peirce", "pragmatics"], + ["charles sanders peirce", "relation algebra"], + ["charles sanders peirce", "truth table"], + ["charles sanders peirce", "oliver wendell holmes jr."], + ["charles sanders peirce", "george herbert mead"], + ["logical connectives", "boolean domain"], + ["logical connectives", "boolean function"], + ["logical connectives", "boolean logic"], + ["logical connectives", "boolean-valued function"], + ["logical connectives", "four-valued logic"], + ["logical connectives", "logical constant"], + ["logical connectives", "modal operator"], + ["logical connectives", "propositional calculus"], + ["logical connectives", "truth function"], + ["logical connectives", "truth table"], + ["logical connectives", "truth value"], + ["marquand diagram", "algebraic normal form"], + ["marquand diagram", "binary decision diagram"], + ["marquand diagram", "espresso heuristic logic minimizer"], + ["marquand diagram", "logic optimization"], + ["marquand diagram", "punnett square"], + ["marquand diagram", "quine–mccluskey algorithm"], + ["marquand diagram", "reed–muller expansion"], + ["marquand diagram", "venn diagram"], + ["marquand diagram", "zhegalkin polynomial"], + ["veitch chart", "algebraic normal form"], + ["veitch chart", "binary decision diagram"], + ["veitch chart", "espresso heuristic logic minimizer"], + ["veitch chart", "logic optimization"], + ["veitch chart", "punnett square"], + ["veitch chart", "quine–mccluskey algorithm"], + ["veitch chart", "reed–muller expansion"], + ["veitch chart", "venn diagram"], + ["veitch chart", "zhegalkin polynomial"], + ["octahedron", "disdyakis dodecahedron"], + ["octahedron", "octahedral molecular geometry"], + ["octahedron", "octahedral symmetry"], + ["octahedron", "octahedral sphere"], + ["triquetra", "borromean rings"], + ["triquetra", "celtic knot"], + ["triquetra", "three hares"], + ["triquetra", "trefoil knot"], + ["triquetra", "triskelion"], + ["vesica piscis", "flower of life (geometry)"], + ["vesica piscis", "villarceau circles"], + ["flower of life (geometry)", "knot theory"], + ["villarceau circles", "vesica piscis"], + ["celtic knot", "triquetra"], + ["three hares", "borromean rings"], + ["trefoil knot", "triquetra"], + ["triskelion", "borromean rings"], + ["triskelion", "celtic knot"], + ["triskelion", "three hares"], + ["triskelion", "triquetra"], + ["ampheck", "bitwise operation"], + ["ampheck", "boolean algebra (logic)"], + ["ampheck", "boolean domain"], + ["ampheck", "boolean function"], + ["ampheck", "functional completeness"], + ["ampheck", "propositional logic"], + ["business process automation", "business-driven development"], + ["business process automation", "business process model and notation"], + ["business process automation", "business process reengineering"], + ["business process automation", "business rules engine"], + ["business process automation", "comparison of business integration software"], + ["process-driven application", "business process automation"], + ["process-driven application", "business process management"], + ["process-driven application", "business process modeling"], + ["process-driven application", "computer-supported collaboration"], + ["process-driven application", "document automation"], + ["process-driven application", "enterprise content management"], + ["process-driven application", "process architecture"], + ["process-driven application", "workflow"], + ["process-driven application", "workflow engine"], + ["process-driven application", "workflow management system"], + ["workflow engine", "business rules engine"], + ["workflow engine", "inference engine"], + ["workflow engine", "ripple down rules"], + ["workflow engine", "semantic reasoner"], + ["workflow engine", "bpel"], + ["workflow engine", "workflow management system"], + ["business process reengineering", "business process management"], + ["business process reengineering", "business process modeling notation"], + ["business process reengineering", "kaizen"], + ["business process reengineering", "learning agenda"], + ["enterprise planning systems", "business intelligence"], + ["enterprise planning systems", "business process management"], + ["enterprise planning systems", "enterprise information system"], + ["enterprise planning systems", "management information system"], + ["syntax diagram", "recursive transition network"], + ["syntax diagram", "extended backus–naur form"], + ["finite state machine", "artificial intelligence"], + ["finite state machine", "control system"], + ["finite state machine", "decision table"], + ["finite state machine", "hidden markov model"], + ["finite state machine", "petri net"], + ["finite state machine", "quantum finite automata"], + ["finite state machine", "scxml"], + ["finite state machine", "state diagram"], + ["finite state machine", "uml state machine"], + ["literate programming", "self-documenting code"], + ["program design language", "pseudocode"], + ["program design language", "flow chart"], + ["short code", "algorithm"], + ["structured programming", "drakon"], + ["structured programming", "nassi–shneiderman diagram"], + ["structured programming", "structure chart"], + ["business model canvas", "business process modeling"], + ["business model canvas", "business reference model"], + ["business process discovery", "business process management"], + ["business process discovery", "data mining"], + ["business process discovery", "process analysis"], + ["business process discovery", "process mining"], + ["ethnography", "ontology"], + ["n2 chart", "business process mapping"], + ["n2 chart", "drakon"], + ["n2 chart", "flow chart"], + ["n2 chart", "function model"], + ["n2 chart", "functional flow block diagram"], + ["process-centered design", "business process"], + ["process-centered design", "usability"], + ["structured analysis and design technique", "idef0"], + ["structured analysis and design technique", "jackson structured programming"], + ["structured analysis and design technique", "structure chart"], + ["structured analysis and design technique", "structured systems analysis and design method"], + ["structured analysis and design technique", "systems analysis"], + ["value stream mapping", "business process mapping"], + ["value stream mapping", "lean manufacturing"], + ["value stream mapping", "value-stream-mapping software"], + ["value stream mapping", "value chain"], + ["value stream mapping", "value stream"], + ["process mining", "business process management"], + ["process mining", "machine learning"], + ["process mining", "data science"], + ["process mining", "sequence mining"], + ["process mining", "data mining"], + ["process mining", "intention mining"], + ["process mining", "data visualization"], + ["process mining", "process analysis"], + ["idef0", "function model"], + ["idef0", "functional flow block diagram"], + ["structure chart", "computer-aided software engineering"], + ["structure chart", "system context diagram"], + ["structure chart", "function model"], + ["structure chart", "hipo"], + ["structure chart", "structured analysis and design technique"], + ["structure chart", "warnier/orr diagram"], + ["structure chart", "work breakdown structure"], + ["decision engineering", "antifragility"], + ["decision engineering", "business intelligence"], + ["decision engineering", "decision quality"], + ["decision engineering", "design rationale"], + ["decision engineering", "heuristics in judgment and decision-making"], + ["structured design", "event partitioning"], + ["structured design", "flow-based programming"], + ["structured design", "hipo"], + ["structured design", "jackson structured programming"], + ["block diagram", "black box"], + ["block diagram", "data flow diagram"], + ["block diagram", "functional flow block diagram"], + ["block diagram", "signal-flow graph"], + ["dataflow", "complex event processing"], + ["dataflow", "data flow diagram"], + ["dataflow", "data-flow analysis"], + ["dataflow", "flow-based programming"], + ["dataflow", "pipeline (computing)"], + ["flow diagram", "function model"], + ["flow process chart", "business process mapping"], + ["flow process chart", "data flow diagram"], + ["flow process chart", "flowchart"], + ["flow process chart", "functional flow block diagram"], + ["flow process chart", "workflow"], + ["functional block diagram", "function model"], + ["functional block diagram", "functional flow block diagram"], + ["pipeline (software)", "flow-based programming"], + ["pipeline (software)", "pipeline (computing)"], + ["pipeline (software)", "xml"], + ["control-flow analysis", "control-flow diagram"], + ["control-flow analysis", "data-flow analysis"], + ["data-flow analysis", "abstract interpretation"], + ["interval (graph theory)", "gallery of named graphs"], + ["interval (graph theory)", "graph algorithms"], + ["interval (graph theory)", "glossary of areas of mathematics"], + ["cyclomatic complexity", "software engineering"], + ["cyclomatic complexity", "software testing"], + ["compiler construction", "abstract interpretation"], + ["intermediate representation", "abstract syntax 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"interactome"], + ["protein–protein interaction prediction", "protein–protein interaction"], + ["protein–protein interaction prediction", "macromolecular docking"], + ["protein–protein interaction prediction", "protein–dna interaction site predictor"], + ["protein–protein interaction prediction", "two-hybrid screening"], + ["protein–protein interaction prediction", "protein structure prediction software"], + ["microsoft automatic graph layout", "graph algorithms"], + ["microsoft automatic graph layout", "graphviz"], + ["dot (graph description language)", "lisp2dot"], + ["dot (graph description language)", "lisp (programming language)"], + ["dot (graph description language)", "genetic programming"], + ["interactome", "bioinformatics"], + ["interactome", "proteomics"], + ["interactome", "genomics"], + ["interactome", "biological network"], + ["interactome", "connectome"], + ["interactome", "glossary of graph theory"], + ["interactome", "human interactome"], + ["interactome", 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@@ -0,0 +1,59 @@ + + + + + + image/svg+xml + + + + + + + + + diff --git a/modules/demo/sigma-server/public/images/company.svg b/modules/demo/sigma-server/public/images/company.svg new file mode 100644 index 000000000..442831bd1 --- /dev/null +++ b/modules/demo/sigma-server/public/images/company.svg @@ -0,0 +1,64 @@ + + + + + + image/svg+xml + + + + + + + + + + diff --git a/modules/demo/sigma-server/public/images/concept.svg b/modules/demo/sigma-server/public/images/concept.svg new file mode 100644 index 000000000..6d6c619a8 --- /dev/null +++ b/modules/demo/sigma-server/public/images/concept.svg @@ -0,0 +1,59 @@ + + + + + + image/svg+xml + + + + + + + + + diff --git a/modules/demo/sigma-server/public/images/field.svg b/modules/demo/sigma-server/public/images/field.svg new file mode 100644 index 000000000..116e06fdc --- /dev/null +++ b/modules/demo/sigma-server/public/images/field.svg @@ -0,0 +1,59 @@ + + + + + + image/svg+xml + + + + + + + + + diff --git a/modules/demo/sigma-server/public/images/list.svg b/modules/demo/sigma-server/public/images/list.svg new file mode 100644 index 000000000..ead61e61c --- /dev/null +++ b/modules/demo/sigma-server/public/images/list.svg @@ -0,0 +1,59 @@ + + + + + + image/svg+xml + + + + + + + + + diff --git a/modules/demo/sigma-server/public/images/method.svg b/modules/demo/sigma-server/public/images/method.svg new file mode 100644 index 000000000..9d14d80d8 --- /dev/null +++ b/modules/demo/sigma-server/public/images/method.svg @@ -0,0 +1,59 @@ + + + + + + image/svg+xml + + + + + + + + + diff --git a/modules/demo/sigma-server/public/images/organization.svg b/modules/demo/sigma-server/public/images/organization.svg new file mode 100644 index 000000000..6ab7858d3 --- /dev/null +++ b/modules/demo/sigma-server/public/images/organization.svg @@ -0,0 +1,59 @@ + + + + + + image/svg+xml + + + + + + + + + diff --git a/modules/demo/sigma-server/public/images/person.svg b/modules/demo/sigma-server/public/images/person.svg new file mode 100644 index 000000000..1d586dcaf --- /dev/null +++ b/modules/demo/sigma-server/public/images/person.svg @@ -0,0 +1,59 @@ + + + + + + image/svg+xml + + + + + + + + + diff --git a/modules/demo/sigma-server/public/images/technology.svg b/modules/demo/sigma-server/public/images/technology.svg new file mode 100644 index 000000000..f108a2526 --- /dev/null +++ b/modules/demo/sigma-server/public/images/technology.svg @@ -0,0 +1,59 @@ + + + + + + image/svg+xml + + + + + + + + + diff --git a/modules/demo/sigma-server/public/images/tool.svg b/modules/demo/sigma-server/public/images/tool.svg new file mode 100644 index 000000000..65d6a6adc --- /dev/null +++ b/modules/demo/sigma-server/public/images/tool.svg @@ -0,0 +1,68 @@ + + + + + + image/svg+xml + + + + + + + + + + + + diff --git a/modules/demo/sigma-server/public/images/unknown.svg b/modules/demo/sigma-server/public/images/unknown.svg new file mode 100644 index 000000000..fa684092a --- /dev/null +++ b/modules/demo/sigma-server/public/images/unknown.svg @@ -0,0 +1,58 @@ + + + + + + image/svg+xml + + + + + + + + + diff --git a/modules/demo/sigma-server/public/index.html b/modules/demo/sigma-server/public/index.html new file mode 100644 index 000000000..61f15ed27 --- /dev/null +++ b/modules/demo/sigma-server/public/index.html @@ -0,0 +1,34 @@ + + + + + + + + + + A cartography of Wikipedia pages around data visualization + + + +
+ + + diff --git a/modules/demo/sigma-server/src/canvas-utils.ts b/modules/demo/sigma-server/src/canvas-utils.ts new file mode 100644 index 000000000..ce5524ce1 --- /dev/null +++ b/modules/demo/sigma-server/src/canvas-utils.ts @@ -0,0 +1,114 @@ +import { NodeDisplayData, PartialButFor, PlainObject } from "sigma/types"; +import { Settings } from "sigma/settings"; + +const TEXT_COLOR = "#000000"; + +/** + * This function draw in the input canvas 2D context a rectangle. + * It only deals with tracing the path, and does not fill or stroke. + */ +export function drawRoundRect( + ctx: CanvasRenderingContext2D, + x: number, + y: number, + width: number, + height: number, + radius: number, +): void { + ctx.beginPath(); + ctx.moveTo(x + radius, y); + ctx.lineTo(x + width - radius, y); + ctx.quadraticCurveTo(x + width, y, x + width, y + radius); + ctx.lineTo(x + width, y + height - radius); + ctx.quadraticCurveTo(x + width, y + height, x + width - radius, y + height); + ctx.lineTo(x + radius, y + height); + ctx.quadraticCurveTo(x, y + height, x, y + height - radius); + ctx.lineTo(x, y + radius); + ctx.quadraticCurveTo(x, y, x + radius, y); + ctx.closePath(); +} + +/** + * Custom hover renderer + */ +export function drawHover(context: CanvasRenderingContext2D, data: PlainObject, settings: PlainObject) { + const size = settings.labelSize; + const font = settings.labelFont; + const weight = settings.labelWeight; + const subLabelSize = size - 2; + + const label = data.label; + const subLabel = data.tag !== "unknown" ? data.tag : ""; + const clusterLabel = data.clusterLabel; + + // Then we draw the label background + context.beginPath(); + context.fillStyle = "#fff"; + context.shadowOffsetX = 0; + context.shadowOffsetY = 2; + context.shadowBlur = 8; + context.shadowColor = "#000"; + + context.font = `${weight} ${size}px ${font}`; + const labelWidth = context.measureText(label).width; + context.font = `${weight} ${subLabelSize}px ${font}`; + const subLabelWidth = subLabel ? context.measureText(subLabel).width : 0; + context.font = `${weight} ${subLabelSize}px ${font}`; + const clusterLabelWidth = clusterLabel ? context.measureText(clusterLabel).width : 0; + + const textWidth = Math.max(labelWidth, subLabelWidth, clusterLabelWidth); + + const x = Math.round(data.x); + const y = Math.round(data.y); + const w = Math.round(textWidth + size / 2 + data.size + 3); + const hLabel = Math.round(size / 2 + 4); + const hSubLabel = subLabel ? Math.round(subLabelSize / 2 + 9) : 0; + const hClusterLabel = Math.round(subLabelSize / 2 + 9); + + drawRoundRect(context, x, y - hSubLabel - 12, w, hClusterLabel + hLabel + hSubLabel + 12, 5); + context.closePath(); + context.fill(); + + context.shadowOffsetX = 0; + context.shadowOffsetY = 0; + context.shadowBlur = 0; + + // And finally we draw the labels + context.fillStyle = TEXT_COLOR; + context.font = `${weight} ${size}px ${font}`; + context.fillText(label, data.x + data.size + 3, data.y + size / 3); + + if (subLabel) { + context.fillStyle = TEXT_COLOR; + context.font = `${weight} ${subLabelSize}px ${font}`; + context.fillText(subLabel, data.x + data.size + 3, data.y - (2 * size) / 3 - 2); + } + + context.fillStyle = data.color; + context.font = `${weight} ${subLabelSize}px ${font}`; + context.fillText(clusterLabel, data.x + data.size + 3, data.y + size / 3 + 3 + subLabelSize); +} + +/** + * Custom label renderer + */ +export default function drawLabel( + context: CanvasRenderingContext2D, + data: PartialButFor, + settings: Settings, +): void { + if (!data.label) return; + + const size = settings.labelSize, + font = settings.labelFont, + weight = settings.labelWeight; + + context.font = `${weight} ${size}px ${font}`; + const width = context.measureText(data.label).width + 8; + + context.fillStyle = "#ffffffcc"; + context.fillRect(data.x + data.size, data.y + size / 3 - 15, width, 20); + + context.fillStyle = "#000"; + context.fillText(data.label, data.x + data.size + 3, data.y + size / 3); +} diff --git a/modules/demo/sigma-server/src/index.tsx b/modules/demo/sigma-server/src/index.tsx new file mode 100644 index 000000000..f79341fbc --- /dev/null +++ b/modules/demo/sigma-server/src/index.tsx @@ -0,0 +1,12 @@ +import React from "react"; +import ReactDOM from "react-dom"; + +import "./styles.css"; +import Root from "./views/Root"; + +ReactDOM.render( + + + , + document.getElementById("root"), +); diff --git a/modules/demo/sigma-server/src/react-app-env.d.ts b/modules/demo/sigma-server/src/react-app-env.d.ts new file mode 100644 index 000000000..6431bc5fc --- /dev/null +++ b/modules/demo/sigma-server/src/react-app-env.d.ts @@ -0,0 +1 @@ +/// diff --git a/modules/demo/sigma-server/src/styles.css b/modules/demo/sigma-server/src/styles.css new file mode 100644 index 000000000..ab2092565 --- /dev/null +++ b/modules/demo/sigma-server/src/styles.css @@ -0,0 +1,335 @@ +@import url("https://fonts.googleapis.com/css2?family=Lora&family=Public+Sans:ital@0;1&display=swap"); + +/** + * VARIABLES: + * ********** + */ +:root { + --ruby: #e22653; + --grey: #999; + --dark-grey: #666; + --light-grey: #ccc; + --cream: #f9f7ed; + --transparent-white: #ffffffcc; + --transition: all ease-out 300ms; + --shadow: 0 1px 5px var(--dark-grey); + --hover-opacity: 0.7; + --stage-padding: 8px; + --panels-width: 350px; + --border-radius: 3px; +} + +/** + * BASE STYLES: + * ************ + */ +body { + font-family: "Public Sans", sans-serif; + background: white; + font-size: 0.9em; + overflow: hidden; +} +h1, +h2 { + font-family: Lora, serif; +} +h2 { + font-size: 1.3em; + margin: 0; +} +h2 > * { + vertical-align: text-top; +} +a { + color: black !important; +} +a:hover { + opacity: var(--hover-opacity); +} + +/** + * LAYOUT: + * ******* + */ +body { + margin: 0; + padding: 0; +} +#root { + width: 100vw; + height: 100vh; + position: relative; +} +#app-root, +.sigma-container { + position: absolute; + inset: 0; +} +.controls { + position: absolute; + bottom: var(--stage-padding); + left: var(--stage-padding); +} +.graph-title { + z-index: 1; + position: absolute; + top: 0; + left: 0; + display: flex; + flex-direction: column; + align-items: flex-start; + max-width: calc(100vw - var(--panels-width) - 3 * var(--stage-padding)); + padding: var(--stage-padding); +} +.graph-title h1 { + font-size: 1.8em; +} +.graph-title h1, +.graph-title h2 { + margin: 0; + background: var(--transparent-white); +} +.panels { + position: absolute; + bottom: 0; + right: 0; + width: 350px; + max-height: calc(100vh - 2 * var(--stage-padding)); + overflow-y: auto; + padding: var(--stage-padding); + scrollbar-width: thin; +} +::-webkit-scrollbar { + width: 5px; +} +::-webkit-scrollbar-track { + background: transparent; +} +::-webkit-scrollbar-thumb { + background-color: var(--grey); + border: transparent; +} + +/** + * USEFUL CLASSES: + * *************** + */ +div.ico > button { + display: block; + position: relative; + font-size: 1.8em; + width: 2em; + height: 2em; + border-radius: var(--border-radius); + box-shadow: var(--shadow); + color: black; + background: white; + border: none; + outline: none; + margin-top: 0.2em; + cursor: pointer; +} +div.ico > button:hover { + color: var(--dark-grey); +} +div.ico > button > * { + position: absolute; + inset: 0; + left: 50%; + top: 50%; + transform: translate(-50%, -50%); +} + +button.btn { + background: white; + color: black; + border: 1px solid black; + outline: none; + border-radius: var(--border-radius); + padding: 0.3em 0.5em; + font-size: 1em; + font-family: Lato, sans-serif; + cursor: pointer; +} +button.btn:hover { + opacity: var(--hover-opacity); +} +button.btn > * { + vertical-align: baseline; +} +.buttons { + display: flex; + justify-content: space-between; +} + +ul { + list-style: none; + padding: 0; +} +ul > li { + margin-top: 0.2em; +} +.text-muted { + color: var(--dark-grey); +} +.text-small { + font-size: 0.7em; + vertical-align: baseline; +} +.mouse-pointer { + cursor: pointer; +} + +/** + * CAPTIONS PANELS: + * **************** + */ +.panel { + background: white; + padding: 1em; + border-radius: var(--border-radius); + box-shadow: var(--shadow); +} +.panel:not(:last-child) { + margin-bottom: 0.5em; +} +.panel h2 button { + float: right; + background: white; + border: 1px solid black; + border-radius: var(--border-radius); + font-size: 1.2em; + height: 1em; + width: 1em; + text-align: center; + padding: 0; + cursor: pointer; + display: flex; + align-items: center; + justify-content: center; +} +.panel h2 button:hover { + opacity: var(--hover-opacity); +} + +.caption-row input[type="checkbox"] { + display: none; +} +.caption-row input[type="checkbox"]:not(:checked) + label { + color: var(--dark-grey); +} +.caption-row input[type="checkbox"]:not(:checked) + label .circle { + background-color: white !important; +} +.caption-row label { + display: flex; + flex-direction: row; + cursor: pointer; +} +.caption-row label:hover { + opacity: var(--hover-opacity); +} +.caption-row label .circle { + flex-shrink: 0; + display: inline-block; + width: 1.2em; + height: 1.2em; + border-radius: 1.2em; + vertical-align: middle; + box-sizing: border-box; + background-color: var(--dark-grey); + background-position: center; + background-size: cover; + background-repeat: no-repeat; + margin-right: 0.2em; + transition: var(--transition); + border: 3px solid var(--dark-grey); +} +.caption-row label .node-label { + flex-grow: 1; +} +.caption-row label .bar { + position: relative; + background: var(--light-grey); + height: 3px; + margin-bottom: 0.2em; +} +.caption-row label .bar .inside-bar { + position: absolute; + top: 0; + left: 0; + height: 100%; + background: var(--dark-grey); + transition: var(--transition); +} + +/** + * SEARCH FIELD: + * ************* + */ +.search-wrapper { + position: relative; +} +.search-wrapper > input[type="search"] { + width: calc(100%); + height: 3em; + box-shadow: var(--shadow); + border: none; + outline: none; + border-radius: var(--border-radius); + margin-bottom: 0.5em; + padding: 1em 1em 1em 3em; + font-family: Lato, sans-serif; + font-size: 1em; +} +.search-wrapper > .icon { + position: absolute; + width: 1em; + height: 1em; + top: 1em; + left: 1em; +} + +/** + * RESPONSIVENESS: + * *************** + */ +@media (max-width: 767.98px) { + #app-root:not(.show-contents) .contents, + #app-root.show-contents .controls { + display: none; + } + + #app-root.show-contents .contents { + position: absolute; + inset: 0; + overflow-y: auto; + scrollbar-width: thin; + background: var(--transparent-white); + } + #app-root.show-contents .graph-title, + #app-root.show-contents .panels { + height: auto; + max-height: unset; + max-width: unset; + position: static; + overflow-y: visible; + width: auto; + } + #app-root.show-contents .graph-title { + background: white; + padding-right: calc(3em + 2 * var(--stage-padding)); + min-height: 3em; + } + #app-root.show-contents .contents .hide-contents { + position: absolute; + top: var(--stage-padding); + right: var(--stage-padding); + } +} +@media (min-width: 768px) { + button.show-contents, + button.hide-contents { + display: none !important; + } +} diff --git a/modules/demo/sigma-server/src/types.ts b/modules/demo/sigma-server/src/types.ts new file mode 100644 index 000000000..86e9012d6 --- /dev/null +++ b/modules/demo/sigma-server/src/types.ts @@ -0,0 +1,32 @@ +export interface NodeData { + key: string; + label: string; + tag: string; + URL: string; + cluster: string; + x: number; + y: number; +} + +export interface Cluster { + key: string; + color: string; + clusterLabel: string; +} + +export interface Tag { + key: string; + image: string; +} + +export interface Dataset { + nodes: NodeData[]; + edges: [string, string][]; + clusters: Cluster[]; + tags: Tag[]; +} + +export interface FiltersState { + clusters: Record; + tags: Record; +} diff --git a/modules/demo/sigma-server/src/use-debounce.ts b/modules/demo/sigma-server/src/use-debounce.ts new file mode 100644 index 000000000..60ffc9174 --- /dev/null +++ b/modules/demo/sigma-server/src/use-debounce.ts @@ -0,0 +1,27 @@ +import { useEffect, useState } from "react"; + +function useDebounce(value: T, delay: number): T { + // State and setters for debounced value + const [debouncedValue, setDebouncedValue] = useState(value); + + useEffect( + () => { + // Update debounced value after delay + const handler = setTimeout(() => { + if (value !== debouncedValue) setDebouncedValue(value); + }, delay); + + // Cancel the timeout if value changes (also on delay change or unmount) + // This is how we prevent debounced value from updating if value is changed ... + // .. within the delay period. Timeout gets cleared and restarted. + return () => { + clearTimeout(handler); + }; + }, + [value, delay], // Only re-call effect if value or delay changes + ); + + return debouncedValue; +} + +export default useDebounce; diff --git a/modules/demo/sigma-server/src/views/ClustersPanel.tsx b/modules/demo/sigma-server/src/views/ClustersPanel.tsx new file mode 100644 index 000000000..2fcad0141 --- /dev/null +++ b/modules/demo/sigma-server/src/views/ClustersPanel.tsx @@ -0,0 +1,112 @@ +import React, { FC, useEffect, useMemo, useState } from "react"; +import { useSigma } from "react-sigma-v2"; +import { sortBy, values, keyBy, mapValues } from "lodash"; +import { MdGroupWork } from "react-icons/md"; +import { AiOutlineCheckCircle, AiOutlineCloseCircle } from "react-icons/ai"; + +import { Cluster, FiltersState } from "../types"; +import Panel from "./Panel"; + +const ClustersPanel: FC<{ + clusters: Cluster[]; + filters: FiltersState; + toggleCluster: (cluster: string) => void; + setClusters: (clusters: Record) => void; +}> = ({ clusters, filters, toggleCluster, setClusters }) => { + const sigma = useSigma(); + const graph = sigma.getGraph(); + + const nodesPerCluster = useMemo(() => { + const index: Record = {}; + graph.forEachNode((_, { cluster }) => (index[cluster] = (index[cluster] || 0) + 1)); + return index; + }, []); + + const maxNodesPerCluster = useMemo(() => Math.max(...values(nodesPerCluster)), [nodesPerCluster]); + const visibleClustersCount = useMemo(() => Object.keys(filters.clusters).length, [filters]); + + const [visibleNodesPerCluster, setVisibleNodesPerCluster] = useState>(nodesPerCluster); + useEffect(() => { + // To ensure the graphology instance has up to data "hidden" values for + // nodes, we wait for next frame before reindexing. This won't matter in the + // UX, because of the visible nodes bar width transition. + requestAnimationFrame(() => { + const index: Record = {}; + graph.forEachNode((_, { cluster, hidden }) => !hidden && (index[cluster] = (index[cluster] || 0) + 1)); + setVisibleNodesPerCluster(index); + }); + }, [filters]); + + const sortedClusters = useMemo( + () => sortBy(clusters, (cluster) => -nodesPerCluster[cluster.key]), + [clusters, nodesPerCluster], + ); + + return ( + + Clusters + {visibleClustersCount < clusters.length ? ( + + {" "} + ({visibleClustersCount} / {clusters.length}) + + ) : ( + "" + )} + + } + > +

+ Click a cluster to show/hide related pages from the network. +

+

+ {" "} + +

+
    + {sortedClusters.map((cluster) => { + const nodesCount = nodesPerCluster[cluster.key]; + const visibleNodesCount = visibleNodesPerCluster[cluster.key] || 0; + return ( +
  • 1 ? "s" : ""}${ + visibleNodesCount !== nodesCount ? ` (only ${visibleNodesCount} visible)` : "" + }`} + > + toggleCluster(cluster.key)} + id={`cluster-${cluster.key}`} + /> +
    • + ); + })} +
+ + ); +}; + +export default ClustersPanel; diff --git a/modules/demo/sigma-server/src/views/DescriptionPanel.tsx b/modules/demo/sigma-server/src/views/DescriptionPanel.tsx new file mode 100644 index 000000000..9f587f8c1 --- /dev/null +++ b/modules/demo/sigma-server/src/views/DescriptionPanel.tsx @@ -0,0 +1,70 @@ +import React, { FC } from "react"; +import { BsInfoCircle } from "react-icons/bs"; + +import Panel from "./Panel"; + +const DescriptionPanel: FC = () => { + return ( + + Description + + } + > +

+ This map represents a network of Wikipedia articles around the topic of "Data vizualisation". Each{" "} + node represents an article, and each edge a{" "} + + "See also" link + + . +

+

+ The seed articles were selected by hand by the{" "} + + Sciences-Po médialab + {" "} + team, and the network was crawled using{" "} + + Seealsology + + , and then cleaned and enriched manually. This makes the dataset creditable to both the médialab team and{" "} + + Wikipedia editors + + . +

+

+ This web application has been developed by{" "} + + OuestWare + + , using{" "} + + react + {" "} + and{" "} + + sigma.js + + . You can read the source code{" "} + + on GitHub + + . +

+

+ Nodes sizes are related to their{" "} + + betweenness centrality + + . More central nodes (ie. bigger nodes) are important crossing points in the network. Finally, You can click a + node to open the related Wikipedia article. +

+ + ); +}; + +export default DescriptionPanel; diff --git a/modules/demo/sigma-server/src/views/GraphDataController.tsx b/modules/demo/sigma-server/src/views/GraphDataController.tsx new file mode 100644 index 000000000..a374e6ce7 --- /dev/null +++ b/modules/demo/sigma-server/src/views/GraphDataController.tsx @@ -0,0 +1,62 @@ +import { useSigma } from "react-sigma-v2"; +import { FC, useEffect } from "react"; +import { keyBy, omit } from "lodash"; + +import { Dataset, FiltersState } from "../types"; + +const GraphDataController: FC<{ dataset: Dataset; filters: FiltersState }> = ({ dataset, filters, children }) => { + const sigma = useSigma(); + const graph = sigma.getGraph(); + + /** + * Feed graphology with the new dataset: + */ + useEffect(() => { + console.log('useEffect GraphDataController.'); + if (!graph || !dataset) return; + + const clusters = keyBy(dataset.clusters, "key"); + const tags = keyBy(dataset.tags, "key"); + + dataset.nodes.forEach((node) => + graph.addNode(node.key, { + ...node, + ...omit(clusters[node.cluster], "key"), + image: `${process.env.PUBLIC_URL}/images/${tags[node.tag].image}`, + }), + ); + dataset.edges.forEach(([source, target]) => graph.addEdge(source, target, { size: 1 })); + + // Use degrees as node sizes: + const scores = graph.nodes().map((node) => graph.getNodeAttribute(node, "score")); + const minDegree = Math.min(...scores); + const maxDegree = Math.max(...scores); + const MIN_NODE_SIZE = 3; + const MAX_NODE_SIZE = 30; + graph.forEachNode((node) => + graph.setNodeAttribute( + node, + "size", + ((graph.getNodeAttribute(node, "score") - minDegree) / (maxDegree - minDegree)) * + (MAX_NODE_SIZE - MIN_NODE_SIZE) + + MIN_NODE_SIZE, + ), + ); + + return () => graph.clear(); + }, [graph, dataset]); + + /** + * Apply filters to graphology: + */ + useEffect(() => { + const { clusters, tags } = filters; + graph.forEachNode((node, { cluster, tag }) => + graph.setNodeAttribute(node, "hidden", !clusters[cluster] || !tags[tag]), + ); + }, [graph, filters]); + + return <>{children}; +}; + +export default GraphDataController; diff --git a/modules/demo/sigma-server/src/views/GraphEventsController.tsx b/modules/demo/sigma-server/src/views/GraphEventsController.tsx new file mode 100644 index 000000000..17f443fe6 --- /dev/null +++ b/modules/demo/sigma-server/src/views/GraphEventsController.tsx @@ -0,0 +1,42 @@ +import { useRegisterEvents, useSigma } from "react-sigma-v2"; +import { FC, useEffect } from "react"; + +function getMouseLayer() { + return document.querySelector(".sigma-mouse"); +} + +const GraphEventsController: FC<{ setHoveredNode: (node: string | null) => void }> = ({ setHoveredNode, children }) => { + const sigma = useSigma(); + const graph = sigma.getGraph(); + const registerEvents = useRegisterEvents(); + + /** + * Initialize here settings that require to know the graph and/or the sigma + * instance: + */ + useEffect(() => { + registerEvents({ + clickNode({ node }) { + if (!graph.getNodeAttribute(node, "hidden")) { + window.open(graph.getNodeAttribute(node, "URL"), "_blank"); + } + }, + enterNode({ node }) { + setHoveredNode(node); + // TODO: Find a better way to get the DOM mouse layer: + const mouseLayer = getMouseLayer(); + if (mouseLayer) mouseLayer.classList.add("mouse-pointer"); + }, + leaveNode() { + setHoveredNode(null); + // TODO: Find a better way to get the DOM mouse layer: + const mouseLayer = getMouseLayer(); + if (mouseLayer) mouseLayer.classList.remove("mouse-pointer"); + }, + }); + }, []); + + return <>{children}; +}; + +export default GraphEventsController; diff --git a/modules/demo/sigma-server/src/views/GraphSettingsController.tsx b/modules/demo/sigma-server/src/views/GraphSettingsController.tsx new file mode 100644 index 000000000..4e46974d0 --- /dev/null +++ b/modules/demo/sigma-server/src/views/GraphSettingsController.tsx @@ -0,0 +1,60 @@ +import { useSigma } from "react-sigma-v2"; +import { FC, useEffect } from "react"; + +import { drawHover } from "../canvas-utils"; +import useDebounce from "../use-debounce"; + +const NODE_FADE_COLOR = "#bbb"; +const EDGE_FADE_COLOR = "#eee"; + +const GraphSettingsController: FC<{ hoveredNode: string | null }> = ({ children, hoveredNode }) => { + const sigma = useSigma(); + const graph = sigma.getGraph(); + + // Here we debounce the value to avoid having too much highlights refresh when + // moving the mouse over the graph: + const debouncedHoveredNode = useDebounce(hoveredNode, 40); + + /** + * Initialize here settings that require to know the graph and/or the sigma + * instance: + */ + useEffect(() => { + sigma.setSetting("hoverRenderer", (context, data, settings) => + drawHover(context, { ...sigma.getNodeDisplayData(data.key), ...data }, settings), + ); + }, [sigma, graph]); + + /** + * Update node and edge reducers when a node is hovered, to highlight its + * neighborhood: + */ + useEffect(() => { + const hoveredColor: string = debouncedHoveredNode ? sigma.getNodeDisplayData(debouncedHoveredNode)!.color : ""; + + sigma.setSetting( + "nodeReducer", + debouncedHoveredNode + ? (node, data) => + node === debouncedHoveredNode || + graph.hasEdge(node, debouncedHoveredNode) || + graph.hasEdge(debouncedHoveredNode, node) + ? { ...data, zIndex: 1 } + : { ...data, zIndex: 0, label: "", color: NODE_FADE_COLOR, image: null, highlighted: false } + : null, + ); + sigma.setSetting( + "edgeReducer", + debouncedHoveredNode + ? (edge, data) => + graph.hasExtremity(edge, debouncedHoveredNode) + ? { ...data, color: hoveredColor, size: 4 } + : { ...data, color: EDGE_FADE_COLOR, hidden: true } + : null, + ); + }, [debouncedHoveredNode]); + + return <>{children}; +}; + +export default GraphSettingsController; diff --git a/modules/demo/sigma-server/src/views/GraphTitle.tsx b/modules/demo/sigma-server/src/views/GraphTitle.tsx new file mode 100644 index 000000000..51373a453 --- /dev/null +++ b/modules/demo/sigma-server/src/views/GraphTitle.tsx @@ -0,0 +1,47 @@ +import React, { FC, useEffect, useState } from "react"; +import { useSigma } from "react-sigma-v2"; + +import { FiltersState } from "../types"; + +function prettyPercentage(val: number): string { + return (val * 100).toFixed(1) + "%"; +} + +const GraphTitle: FC<{ filters: FiltersState }> = ({ filters }) => { + const sigma = useSigma(); + const graph = sigma.getGraph(); + + const [visibleItems, setVisibleItems] = useState<{ nodes: number; edges: number }>({ nodes: 0, edges: 0 }); + useEffect(() => { + // To ensure the graphology instance has up to data "hidden" values for + // nodes, we wait for next frame before reindexing. This won't matter in the + // UX, because of the visible nodes bar width transition. + requestAnimationFrame(() => { + const index = { nodes: 0, edges: 0 }; + graph.forEachNode((_, { hidden }) => !hidden && index.nodes++); + graph.forEachEdge((_, _2, _3, _4, source, target) => !source.hidden && !target.hidden && index.edges++); + setVisibleItems(index); + }); + }, [filters]); + + return ( +
+

A cartography of Wikipedia pages around data visualization

+

+ + {graph.order} node{graph.order > 1 ? "s" : ""}{" "} + {visibleItems.nodes !== graph.order + ? ` (only ${prettyPercentage(visibleItems.nodes / graph.order)} visible)` + : ""} + , {graph.size} edge + {graph.size > 1 ? "s" : ""}{" "} + {visibleItems.edges !== graph.size + ? ` (only ${prettyPercentage(visibleItems.edges / graph.size)} visible)` + : ""} + +

+
+ ); +}; + +export default GraphTitle; diff --git a/modules/demo/sigma-server/src/views/Panel.tsx b/modules/demo/sigma-server/src/views/Panel.tsx new file mode 100644 index 000000000..3485f9191 --- /dev/null +++ b/modules/demo/sigma-server/src/views/Panel.tsx @@ -0,0 +1,37 @@ +import React, { FC, useEffect, useRef, useState } from "react"; +import { MdExpandLess, MdExpandMore } from "react-icons/md"; +import AnimateHeight from "react-animate-height"; + +const DURATION = 300; + +const Panel: FC<{ title: JSX.Element | string; initiallyDeployed?: boolean }> = ({ + title, + initiallyDeployed, + children, +}) => { + const [isDeployed, setIsDeployed] = useState(initiallyDeployed || false); + const dom = useRef(null); + + useEffect(() => { + if (isDeployed) + setTimeout(() => { + if (dom.current) dom.current.parentElement!.scrollTo({ top: dom.current.offsetTop - 5, behavior: "smooth" }); + }, DURATION); + }, [isDeployed]); + + return ( +
+

+ {title}{" "} + +

+ + {children} + +
+ ); +}; + +export default Panel; diff --git a/modules/demo/sigma-server/src/views/Root.tsx b/modules/demo/sigma-server/src/views/Root.tsx new file mode 100644 index 000000000..a70c0ddcc --- /dev/null +++ b/modules/demo/sigma-server/src/views/Root.tsx @@ -0,0 +1,153 @@ +import React, { FC, useEffect, useState } from "react"; +import { SigmaContainer, ZoomControl, FullScreenControl } from "react-sigma-v2"; +import { omit, mapValues, keyBy, constant } from "lodash"; + +import getNodeProgramImage from "sigma/rendering/webgl/programs/node.image"; + +import GraphSettingsController from "./GraphSettingsController"; +import GraphEventsController from "./GraphEventsController"; +import GraphDataController from "./GraphDataController"; +import DescriptionPanel from "./DescriptionPanel"; +import { Dataset, FiltersState } from "../types"; +import ClustersPanel from "./ClustersPanel"; +import SearchField from "./SearchField"; +import drawLabel from "../canvas-utils"; +import GraphTitle from "./GraphTitle"; +import TagsPanel from "./TagsPanel"; + +import "react-sigma-v2/lib/react-sigma-v2.css"; +import { GrClose } from "react-icons/gr"; +import { BiRadioCircleMarked, BiBookContent } from "react-icons/bi"; +import { BsArrowsFullscreen, BsFullscreenExit, BsZoomIn, BsZoomOut } from "react-icons/bs"; + +const Root: FC = () => { + const [showContents, setShowContents] = useState(false); + const [dataReady, setDataReady] = useState(false); + const [dataset, setDataset] = useState(null); + const [filtersState, setFiltersState] = useState({ + clusters: {}, + tags: {}, + }); + const [hoveredNode, setHoveredNode] = useState(null); + + // Load data on mount: + useEffect(() => { + fetch(`${process.env.PUBLIC_URL}/dataset_small.json`) + .then((res) => res.json()) + .then((dataset: Dataset) => { + setDataset(dataset); + setFiltersState({ + clusters: mapValues(keyBy(dataset.clusters, "key"), constant(true)), + tags: mapValues(keyBy(dataset.tags, "key"), constant(true)), + }); + requestAnimationFrame(() => setDataReady(true)); + }); + }, []); + + if (!dataset) return null; + + return ( +
+ + + + + + {dataReady && ( + <> +
+
+ +
+ } + customExitFullScreen={} + /> + } + customZoomOut={} + customZoomCenter={} + /> +
+
+
+ +
+ +
+ + + + setFiltersState((filters) => ({ + ...filters, + clusters, + })) + } + toggleCluster={(cluster) => { + setFiltersState((filters) => ({ + ...filters, + clusters: filters.clusters[cluster] + ? omit(filters.clusters, cluster) + : { ...filters.clusters, [cluster]: true }, + })); + }} + /> + + setFiltersState((filters) => ({ + ...filters, + tags, + })) + } + toggleTag={(tag) => { + setFiltersState((filters) => ({ + ...filters, + tags: filters.tags[tag] ? omit(filters.tags, tag) : { ...filters.tags, [tag]: true }, + })); + }} + /> +
+
+ + )} + +
+ ); +}; + +export default Root; diff --git a/modules/demo/sigma-server/src/views/SearchField.tsx b/modules/demo/sigma-server/src/views/SearchField.tsx new file mode 100644 index 000000000..466410305 --- /dev/null +++ b/modules/demo/sigma-server/src/views/SearchField.tsx @@ -0,0 +1,102 @@ +import React, { KeyboardEvent, ChangeEvent, FC, useEffect, useState } from "react"; +import { useSigma } from "react-sigma-v2"; +import { Attributes } from "graphology-types"; +import { BsSearch } from "react-icons/bs"; + +import { FiltersState } from "../types"; + +/** + * This component is basically a fork from React-sigma-v2's SearchControl + * component, to get some minor adjustments: + * 1. We need to hide hidden nodes from results + * 2. We need custom markup + */ +const SearchField: FC<{ filters: FiltersState }> = ({ filters }) => { + const sigma = useSigma(); + + const [search, setSearch] = useState(""); + const [values, setValues] = useState>([]); + const [selected, setSelected] = useState(null); + + const refreshValues = () => { + const newValues: Array<{ id: string; label: string }> = []; + const lcSearch = search.toLowerCase(); + if (!selected && search.length > 1) { + sigma.getGraph().forEachNode((key: string, attributes: Attributes): void => { + if (!attributes.hidden && attributes.label && attributes.label.toLowerCase().indexOf(lcSearch) === 0) + newValues.push({ id: key, label: attributes.label }); + }); + } + setValues(newValues); + }; + + // Refresh values when search is updated: + useEffect(() => refreshValues(), [search]); + + // Refresh values when filters are updated (but wait a frame first): + useEffect(() => { + requestAnimationFrame(refreshValues); + }, [filters]); + + useEffect(() => { + if (!selected) return; + + sigma.getGraph().setNodeAttribute(selected, "highlighted", true); + const nodeDisplayData = sigma.getNodeDisplayData(selected); + + if (nodeDisplayData) + sigma.getCamera().animate( + { ...nodeDisplayData, ratio: 0.05 }, + { + duration: 600, + }, + ); + + return () => { + sigma.getGraph().setNodeAttribute(selected, "highlighted", false); + }; + }, [selected]); + + const onInputChange = (e: ChangeEvent) => { + const searchString = e.target.value; + const valueItem = values.find((value) => value.label === searchString); + if (valueItem) { + setSearch(valueItem.label); + setValues([]); + setSelected(valueItem.id); + } else { + setSelected(null); + setSearch(searchString); + } + }; + + const onKeyPress = (e: KeyboardEvent) => { + if (e.key === "Enter" && values.length) { + setSearch(values[0].label); + setSelected(values[0].id); + } + }; + + return ( +
+ + + + {values.map((value: { id: string; label: string }) => ( + + ))} + +
+ ); +}; + +export default SearchField; diff --git a/modules/demo/sigma-server/src/views/TagsPanel.tsx b/modules/demo/sigma-server/src/views/TagsPanel.tsx new file mode 100644 index 000000000..b0b78167d --- /dev/null +++ b/modules/demo/sigma-server/src/views/TagsPanel.tsx @@ -0,0 +1,115 @@ +import React, { FC, useEffect, useMemo, useState } from "react"; +import { useSigma } from "react-sigma-v2"; +import { MdCategory } from "react-icons/md"; +import { keyBy, mapValues, sortBy, values } from "lodash"; +import { AiOutlineCheckCircle, AiOutlineCloseCircle } from "react-icons/ai"; + +import { FiltersState, Tag } from "../types"; +import Panel from "./Panel"; + +const TagsPanel: FC<{ + tags: Tag[]; + filters: FiltersState; + toggleTag: (tag: string) => void; + setTags: (tags: Record) => void; +}> = ({ tags, filters, toggleTag, setTags }) => { + const sigma = useSigma(); + const graph = sigma.getGraph(); + + const nodesPerTag = useMemo(() => { + const index: Record = {}; + graph.forEachNode((_, { tag }) => (index[tag] = (index[tag] || 0) + 1)); + return index; + }, []); + + const maxNodesPerTag = useMemo(() => Math.max(...values(nodesPerTag)), [nodesPerTag]); + const visibleTagsCount = useMemo(() => Object.keys(filters.tags).length, [filters]); + + const [visibleNodesPerTag, setVisibleNodesPerTag] = useState>(nodesPerTag); + useEffect(() => { + // To ensure the graphology instance has up to data "hidden" values for + // nodes, we wait for next frame before reindexing. This won't matter in the + // UX, because of the visible nodes bar width transition. + requestAnimationFrame(() => { + const index: Record = {}; + graph.forEachNode((_, { tag, hidden }) => !hidden && (index[tag] = (index[tag] || 0) + 1)); + setVisibleNodesPerTag(index); + }); + }, [filters]); + + const sortedTags = useMemo( + () => sortBy(tags, (tag) => (tag.key === "unknown" ? Infinity : -nodesPerTag[tag.key])), + [tags, nodesPerTag], + ); + + return ( + + Categories + {visibleTagsCount < tags.length ? ( + + {" "} + ({visibleTagsCount} / {tags.length}) + + ) : ( + "" + )} + + } + > +

+ Click a category to show/hide related pages from the network. +

+

+ {" "} + +

+
    + {sortedTags.map((tag) => { + const nodesCount = nodesPerTag[tag.key]; + const visibleNodesCount = visibleNodesPerTag[tag.key] || 0; + return ( +
  • 1 ? "s" : ""}${ + visibleNodesCount !== nodesCount ? ` (only ${visibleNodesCount} visible)` : "" + }`} + > + toggleTag(tag.key)} + id={`tag-${tag.key}`} + /> +
    • + ); + })} +
+ + ); +}; + +export default TagsPanel; diff --git a/modules/demo/sigma-server/tsconfig.json b/modules/demo/sigma-server/tsconfig.json new file mode 100644 index 000000000..a273b0cfc --- /dev/null +++ b/modules/demo/sigma-server/tsconfig.json @@ -0,0 +1,26 @@ +{ + "compilerOptions": { + "target": "es5", + "lib": [ + "dom", + "dom.iterable", + "esnext" + ], + "allowJs": true, + "skipLibCheck": true, + "esModuleInterop": true, + "allowSyntheticDefaultImports": true, + "strict": true, + "forceConsistentCasingInFileNames": true, + "noFallthroughCasesInSwitch": true, + "module": "esnext", + "moduleResolution": "node", + "resolveJsonModule": true, + "isolatedModules": true, + "noEmit": true, + "jsx": "react-jsx" + }, + "include": [ + "src" + ] +} From f6ccc10f52b53b0bcc4963ab52539ea88519d8a4 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Thu, 12 May 2022 17:46:07 -0500 Subject: [PATCH 11/68] Get it working with TypeScript. --- modules/demo/rapids-api-server/app.js | 17 +- .../demo/rapids-api-server/package-lock.json | 2886 +++++++++++++++++ modules/demo/rapids-api-server/package.json | 5 +- modules/demo/rapids-api-server/routes/root.js | 29 - modules/demo/rapids-api-server/routes/root.ts | 96 + 5 files changed, 2993 insertions(+), 40 deletions(-) create mode 100644 modules/demo/rapids-api-server/package-lock.json delete mode 100644 modules/demo/rapids-api-server/routes/root.js create mode 100644 modules/demo/rapids-api-server/routes/root.ts diff --git a/modules/demo/rapids-api-server/app.js b/modules/demo/rapids-api-server/app.js index a01f327bd..7c6f12ea1 100644 --- a/modules/demo/rapids-api-server/app.js +++ b/modules/demo/rapids-api-server/app.js @@ -1,9 +1,9 @@ 'use strict' -const path = require('path') +const path = require('path') const AutoLoad = require('@fastify/autoload') -module.exports = async function (fastify, opts) { +module.exports = async function(fastify, opts) { // Place here your custom code! // Do not touch the following lines @@ -11,15 +11,12 @@ module.exports = async function (fastify, opts) { // This loads all plugins defined in plugins // those should be support plugins that are reused // through your application - fastify.register(AutoLoad, { - dir: path.join(__dirname, 'plugins'), - options: Object.assign({}, opts) - }) + fastify.register(AutoLoad, + {dir: path.join(__dirname, 'plugins'), options: Object.assign({}, opts)}) // This loads all plugins defined in routes // define your routes in one of these - fastify.register(AutoLoad, { - dir: path.join(__dirname, 'routes'), - options: Object.assign({}, opts) - }) + fastify.register( + AutoLoad, + {dir: path.join(__dirname, 'routes'), options: Object.assign({}, opts), ignorePattern: /.*.ts/}) } diff --git a/modules/demo/rapids-api-server/package-lock.json b/modules/demo/rapids-api-server/package-lock.json 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"sha512-y11nGElTIV+CT3Zv9t7VKl+Q3hTQoT9a1Qzezhhl6Rp21gJ/IVTW7Z3y9EWXhuUBC2Shnf+DX0antecpAwSP8w==" + }, + "yoga-layout-prebuilt": { + "version": "1.10.0", + "resolved": "https://registry.npmjs.org/yoga-layout-prebuilt/-/yoga-layout-prebuilt-1.10.0.tgz", + "integrity": "sha512-YnOmtSbv4MTf7RGJMK0FvZ+KD8OEe/J5BNnR0GHhD8J/XcG/Qvxgszm0Un6FTHWW4uHlTgP0IztiXQnGyIR45g==", + "dev": true, + "requires": { + "@types/yoga-layout": "1.9.2" + } + } + } +} diff --git a/modules/demo/rapids-api-server/package.json b/modules/demo/rapids-api-server/package.json index 3347c5d94..fdc6b3ae5 100644 --- a/modules/demo/rapids-api-server/package.json +++ b/modules/demo/rapids-api-server/package.json @@ -8,6 +8,7 @@ }, "scripts": { "test": "tap \"test/**/*.test.js\"", + "build": "tsc -p tsconfig.json", "start": "fastify start -l info app.js", "dev": "fastify start -w -l info -P app.js" }, @@ -17,9 +18,11 @@ "dependencies": { "@fastify/autoload": "^4.0.0", "@fastify/sensible": "^4.0.0", + "@types/node": "17.0.33", "fastify": "^3.0.0", "fastify-cli": "^3.0.1", - "fastify-plugin": "^3.0.0" + "fastify-plugin": "^3.0.0", + "typescript": "4.6.4" }, "devDependencies": { "tap": "^16.1.0" diff --git a/modules/demo/rapids-api-server/routes/root.js b/modules/demo/rapids-api-server/routes/root.js deleted file mode 100644 index 3827060ce..000000000 --- a/modules/demo/rapids-api-server/routes/root.js +++ /dev/null @@ -1,29 +0,0 @@ -'use strict' - -const {Series} = require('@rapidsai/cudf'); - -module.exports = async function(fastify, opts) { - fastify.get('/', async function(request, reply) { - const x = Series.new([1, 2, 3]); - return { root: true, data: x.toArray() } - }); - fastify.get('/hello', async function(request, reply) { return 'hello'; }); - fastify.route({ - method: 'GET', - url: '/load-graphology-json', - schema: { - querystring: {filename: {type: 'string'}}, - - response: { - 200: { - type: 'object', - properties: - {success: {type: 'boolean'}, message: {type: 'string'}, params: {type: 'string'}} - } - } - }, - handler: async (request, reply) => { - return { 'params': request.query.filename, success: false, message: 'Not implemented.' } - } - }); -} diff --git a/modules/demo/rapids-api-server/routes/root.ts b/modules/demo/rapids-api-server/routes/root.ts new file mode 100644 index 000000000..40f4dc84e --- /dev/null +++ b/modules/demo/rapids-api-server/routes/root.ts @@ -0,0 +1,96 @@ +import { + Bool8, + Column, + DataFrame, + DataType, + Float32, + Float32Series, + Float64, + Float64Series, + Int16, + Int16Series, + Int32, + Int32Series, + Int64, + Int64Series, + Int8, + Int8Series, + Series, + SeriesMap, + StringSeries, + TimestampDay, + TimestampMicrosecond, + TimestampMillisecond, + TimestampNanosecond, + TimestampSecond, + Uint16, + Uint16Series, + Uint32, + Uint32Series, + Uint64, + Uint64Series, + Uint8, + Uint8Series, + Utf8String +} from '@rapidsai/cudf'; + +/* TODO: How do I apply a list of dtypes? + */ +function json_aos_to_dataframe( + str: StringSeries, columns: ReadonlyArray, _: ReadonlyArray): DataFrame { + const arr = {} as SeriesMap; + columns.forEach((col, ix) => { + const no_open_list = str.split('[\n').gather([1], false); + const tokenized = no_open_list.split('},'); + console.log(tokenized.toArray()); + const parse_result = tokenized._col.getJSONObject('.' + columns[ix]); + arr[col] = Series.new(parse_result); + console.log(Series.new(parse_result).toArray()); + }); + const result = new DataFrame(arr); + return result; +} +/* TODO: How do I apply a list of dtypes? + */ +function json_aoa_to_dataframe(str: StringSeries, dtypes: ReadonlyArray): DataFrame { + const arr = {} as SeriesMap; + dtypes.forEach((_, ix) => { + const no_open_list = str.split('[\n').gather([1], false); + const tokenized = no_open_list.split('],'); + const get_ix = `[${ix}]`; + const parse_result = tokenized._col.getJSONObject(get_ix); + arr[ix] = Series.new(parse_result); + }); + const result = new DataFrame(arr); + return result; +} + +module.exports = async function(fastify: any, opts: any) { + fastify.get('/', async function(request: any, reply: any) { + const x = Series.new([1, 2, 3]); + return { root: true, data: x.toArray() } + }); + fastify.get('/hello', async function(request: any, reply: any) { return 'hello'; }); + fastify.route({ + method: 'GET', + url: '/load-graphology-json', + schema: { + querystring: {filename: {type: 'string'}}, + + response: { + 200: { + type: 'object', + properties: + {success: {type: 'boolean'}, message: {type: 'string'}, params: {type: 'string'}} + } + } + }, + handler: async (request: any, reply: any) => { + // load the file via read_text + // parse it with json etc + // store the results in a global cache + // return that it is done + return { 'params': request.query.filename, success: false, message: 'Not implemented.' } + } + }); +} From a32a77e6d1befba63aa54dba065e15a0eb604158 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 13 May 2022 14:56:53 -0500 Subject: [PATCH 12/68] Write fastify server that can read graphology datasets. --- .../routes/dataset_small.json.txt | 105 ++++++++++++++++++ .../routes/graphology/root.ts | 91 +++++++++++++++ modules/demo/rapids-api-server/routes/root.ts | 103 +++++++++++++++-- modules/demo/rapids-api-server/tsconfig.json | 101 +++++++++++++++++ 4 files changed, 388 insertions(+), 12 deletions(-) create mode 100644 modules/demo/rapids-api-server/routes/dataset_small.json.txt create mode 100644 modules/demo/rapids-api-server/routes/graphology/root.ts create mode 100644 modules/demo/rapids-api-server/tsconfig.json diff --git a/modules/demo/rapids-api-server/routes/dataset_small.json.txt b/modules/demo/rapids-api-server/routes/dataset_small.json.txt new file mode 100644 index 000000000..fbc30ccf0 --- /dev/null +++ b/modules/demo/rapids-api-server/routes/dataset_small.json.txt @@ -0,0 +1,105 @@ +{ + "nodes": [ + { + "key": "customer data management", + "label": "Customer data management", + "tag": "Field", + "URL": "https://en.wikipedia.org/wiki/Customer%20data%20management", + "cluster": "7", + "x": -278.2200012207031, + "y": 436.0100402832031, + "score": 0 + }, + { + "key": "educational data mining", + "label": "Educational data mining", + "tag": "Field", + "URL": "https://en.wikipedia.org/wiki/Educational%20data%20mining", + "cluster": "7", + "x": -1.9823756217956543, + "y": 250.4990692138672, + "score": 0 + }, + { + "key": "pathogenomics", + "label": "Pathogenomics", + "tag": "Field", + "URL": "https://en.wikipedia.org/wiki/Pathogenomics", + "cluster": "15", + "x": 959.1505737304688, + "y": -845.7308349609375, + "score": 0 + }, + { + "key": "office suite", + "label": "Office suite", + "tag": "Technology", + "URL": "https://en.wikipedia.org/wiki/Office%20suite", + "cluster": "1", + "x": -768.05224609375, + "y": 397.08294677734375, + "score": 0 + }, + { + "key": "human interactome", + "label": "Human interactome", + "tag": "Concept", + "URL": "https://en.wikipedia.org/wiki/Human%20interactome", + "cluster": "15", + "x": 1014.8722534179688, + "y": -673.8775634765625, + "score": 0 + } + ], + "edges": [ + ["office suite", "human interactome"], + ["educational data mining", "human interactome"], + ["customer data management", "office suite"], + ["educational data mining", "office suite"], + ["pathogenomics", "educational data mining"], + ["pathogenomics", "office suite"], + ["educational data mining", "pathogenomics"], + ["educational data mining", "customer data management"], + ["office suite", "pathogenomics"], + ["customer data management", "pathogenomics"] + ], + "clusters": [ + { "key": "0", "color": "#6c3e81", "clusterLabel": "human interactome" }, + { "key": "1", "color": "#666666", "clusterLabel": "Spreadsheets" }, + { "key": "3", "color": "#57a835", "clusterLabel": "Logic of information" }, + { "key": "4", "color": "#7145cd", "clusterLabel": "Trees and data structures" }, + { "key": "5", "color": "#579f5f", "clusterLabel": "Business intelligence" }, + { "key": "6", "color": "#d043c4", "clusterLabel": "Exploratory data analysis" }, + { "key": "7", "color": "#477028", "clusterLabel": "Softwares and data mining" }, + { "key": "8", "color": "#b174cb", "clusterLabel": "Project management" }, + { "key": "10", "color": "#a4923a", "clusterLabel": "Engineering" }, + { "key": "11", "color": "#5f83cc", "clusterLabel": "Semantic networks" }, + { "key": "12", "color": "#666666", "clusterLabel": "Sociometry" }, + { "key": "13", "color": "#666666", "clusterLabel": "Ideas and concepts" }, + { "key": "14", "color": "#db4139", "clusterLabel": "Arguments / Logic" }, + { "key": "15", "color": "#379982", "clusterLabel": "Scientific classification" }, + { "key": "16", "color": "#666666", "clusterLabel": "Decision trees" }, + { "key": "17", "color": "#666666", "clusterLabel": "Motion perception" }, + { "key": "18", "color": "#c94c83", "clusterLabel": "Artificial intelligence" }, + { "key": "19", "color": "#666666", "clusterLabel": "Linguistics" }, + { "key": "20", "color": "#7c5d28", "clusterLabel": "Collaborative problem solving" }, + { "key": "21", "color": "#a54a49", "clusterLabel": "Knowledge management" }, + { "key": "22", "color": "#666666", "clusterLabel": "Clinical terms and technologies" }, + { "key": "23", "color": "#cf7435", "clusterLabel": "Network Science" }, + { "key": "25", "color": "#666666", "clusterLabel": "Knots" }, + { "key": "24", "color": "#666666", "clusterLabel": "Tensors (mathematics)" } + ], + "tags": [ + { "key": "Chart type", "image": "charttype.svg" }, + { "key": "Company", "image": "company.svg" }, + { "key": "Concept", "image": "concept.svg" }, + { "key": "Field", "image": "field.svg" }, + { "key": "List", "image": "list.svg" }, + { "key": "Method", "image": "method.svg" }, + { "key": "Organization", "image": "organization.svg" }, + { "key": "Person", "image": "person.svg" }, + { "key": "Technology", "image": "technology.svg" }, + { "key": "Tool", "image": "tool.svg" }, + { "key": "unknown", "image": "unknown.svg" } + ] +} diff --git a/modules/demo/rapids-api-server/routes/graphology/root.ts b/modules/demo/rapids-api-server/routes/graphology/root.ts new file mode 100644 index 000000000..996d1f13e --- /dev/null +++ b/modules/demo/rapids-api-server/routes/graphology/root.ts @@ -0,0 +1,91 @@ +import { + Bool8, + Column, + DataFrame, + DataType, + Float32, + Float32Series, + Float64, + Float64Series, + Int16, + Int16Series, + Int32, + Int32Series, + Int64, + Int64Series, + Int8, + Int8Series, + Series, + SeriesMap, + StringSeries, + TimestampDay, + TimestampMicrosecond, + TimestampMillisecond, + TimestampNanosecond, + TimestampSecond, + Uint16, + Uint16Series, + Uint32, + Uint32Series, + Uint64, + Uint64Series, + Uint8, + Uint8Series, + Utf8String +} from '@rapidsai/cudf'; + +/* TODO: How do I apply a list of dtypes? + */ +function json_aos_to_dataframe( + str: StringSeries, columns: ReadonlyArray, _: ReadonlyArray): DataFrame { + const arr = {} as SeriesMap; + columns.forEach((col, ix) => { + const no_open_list = str.split('[\n').gather([1], false); + const tokenized = no_open_list.split('},'); + console.log(tokenized.toArray()); + const parse_result = tokenized._col.getJSONObject('.' + columns[ix]); + arr[col] = Series.new(parse_result); + console.log(Series.new(parse_result).toArray()); + }); + const result = new DataFrame(arr); + return result; +} +/* TODO: How do I apply a list of dtypes? + */ +function json_aoa_to_dataframe(str: StringSeries, dtypes: ReadonlyArray): DataFrame { + const arr = {} as SeriesMap; + dtypes.forEach((_, ix) => { + const no_open_list = str.split('[\n').gather([1], false); + const tokenized = no_open_list.split('],'); + const get_ix = `[${ix}]`; + const parse_result = tokenized._col.getJSONObject(get_ix); + arr[ix] = Series.new(parse_result); + }); + const result = new DataFrame(arr); + return result; +} + +module.exports = async function(fastify: any, opts: any) { + fastify.route({ + method: 'GET', + url: '/graphology/read_json/:filename', + schema: { + querystring: {filename: {type: 'string'}}, + + response: { + 200: { + type: 'object', + properties: + {success: {type: 'boolean'}, message: {type: 'string'}, params: {type: 'string'}} + } + } + }, + handler: async (request: any, reply: any) => { + // load the file via read_text + // parse it with json etc + // store the results in a global cache + // return that it is done + return { 'params': request.query.filename, success: false, message: 'Not implemented.' } + } + }); +} diff --git a/modules/demo/rapids-api-server/routes/root.ts b/modules/demo/rapids-api-server/routes/root.ts index 40f4dc84e..c74945e39 100644 --- a/modules/demo/rapids-api-server/routes/root.ts +++ b/modules/demo/rapids-api-server/routes/root.ts @@ -33,6 +33,10 @@ import { Uint8Series, Utf8String } from '@rapidsai/cudf'; +import {fstat} from 'fs'; + +const Fs = require('fs'); +const Path = require('path'); /* TODO: How do I apply a list of dtypes? */ @@ -42,10 +46,8 @@ function json_aos_to_dataframe( columns.forEach((col, ix) => { const no_open_list = str.split('[\n').gather([1], false); const tokenized = no_open_list.split('},'); - console.log(tokenized.toArray()); const parse_result = tokenized._col.getJSONObject('.' + columns[ix]); arr[col] = Series.new(parse_result); - console.log(Series.new(parse_result).toArray()); }); const result = new DataFrame(arr); return result; @@ -66,16 +68,32 @@ function json_aoa_to_dataframe(str: StringSeries, dtypes: ReadonlyArray { // load the file via read_text - // parse it with json etc - // store the results in a global cache - // return that it is done - return { 'params': request.query.filename, success: false, message: 'Not implemented.' } + // is the file local or remote? + let message: string = 'Unknown error'; + let result = {'params': JSON.stringify(request.query), success: false, message: message}; + + console.log(result); + if (request.query.filename.search('http') != -1) { + message = 'Remote files not supported yet.' + console.log(result); + } else { + message = 'File is not remote'; + // does the file exist? + const path = Path.join(__dirname, request.query.filename); + try { + Fs.stat(path, (err: any, stats: any) => { + if (err) { + message = 'File does not exist at ' + path; + result.message = message; + reply.code(200).send(result); + } else { + // did the file read? + message = 'File is available'; + const dataset = StringSeries.read_text(path, ''); + message = 'File could not be read'; + request.query.rootkeys.reverse().forEach((element: ' string') => { + let split = dataset.split('"tags":'); + const ttags = split.gather([1], false); + let rest = split.gather([0], false); + split = rest.split('"clusters":'); + const tclusters = split.gather([1], false); + rest = split.gather([0], false); + split = rest.split('"edges":'); + const tedges = split.gather([1], false); + rest = split.gather([0], false); + split = rest.split('"nodes":'); + const tnodes = split.gather([1], false); + const tags = + json_aos_to_dataframe(ttags, ['key', 'image'], [new Utf8String, new Utf8String]); + const clusters = json_aos_to_dataframe(tclusters, + ['key', 'color', 'clusterLabel'], + [new Int32, new Utf8String, new Utf8String]); + const nodes = json_aos_to_dataframe( + tnodes, ['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score'], [ + new Utf8String, + new Utf8String, + new Utf8String, + new Utf8String, + new Int32, + new Float64, + new Float64, + new Int32 + ]); + const edges = json_aoa_to_dataframe(tedges, [new Utf8String, new Utf8String]); + }); + result.success = true; + message = 'Successfully parsed json file onto GPU.'; + result.message = message; + reply.code(200).send(result); + } + }); + } catch { + message = 'Exception reading file.'; + result.message = message; + reply.code(200).send(result); + }; + } } }); } diff --git a/modules/demo/rapids-api-server/tsconfig.json b/modules/demo/rapids-api-server/tsconfig.json new file mode 100644 index 000000000..56794816b --- /dev/null +++ b/modules/demo/rapids-api-server/tsconfig.json @@ -0,0 +1,101 @@ +{ + "compilerOptions": { + /* Visit https://aka.ms/tsconfig.json to read more about this file */ + + /* Projects */ + // "incremental": true, /* Enable incremental compilation */ + // "composite": true, /* Enable constraints that allow a TypeScript project to be used with project references. */ + // "tsBuildInfoFile": "./", /* Specify the folder for .tsbuildinfo incremental compilation files. */ + // "disableSourceOfProjectReferenceRedirect": true, /* Disable preferring source files instead of declaration files when referencing composite projects */ + // "disableSolutionSearching": true, /* Opt a project out of multi-project reference checking when editing. */ + // "disableReferencedProjectLoad": true, /* Reduce the number of projects loaded automatically by TypeScript. */ + + /* Language and Environment */ + "target": "es2016", /* Set the JavaScript language version for emitted JavaScript and include compatible library declarations. */ + // "lib": [], /* Specify a set of bundled library declaration files that describe the target runtime environment. */ + // "jsx": "preserve", /* Specify what JSX code is generated. */ + // "experimentalDecorators": true, /* Enable experimental support for TC39 stage 2 draft decorators. */ + // "emitDecoratorMetadata": true, /* Emit design-type metadata for decorated declarations in source files. */ + // "jsxFactory": "", /* Specify the JSX factory function used when targeting React JSX emit, e.g. 'React.createElement' or 'h' */ + // "jsxFragmentFactory": "", /* Specify the JSX Fragment reference used for fragments when targeting React JSX emit e.g. 'React.Fragment' or 'Fragment'. */ + // "jsxImportSource": "", /* Specify module specifier used to import the JSX factory functions when using `jsx: react-jsx*`.` */ + // "reactNamespace": "", /* Specify the object invoked for `createElement`. This only applies when targeting `react` JSX emit. */ + // "noLib": true, /* Disable including any library files, including the default lib.d.ts. */ + // "useDefineForClassFields": true, /* Emit ECMAScript-standard-compliant class fields. */ + + /* Modules */ + "module": "commonjs", /* Specify what module code is generated. */ + // "rootDir": "./", /* Specify the root folder within your source files. */ + // "moduleResolution": "node", /* Specify how TypeScript looks up a file from a given module specifier. */ + // "baseUrl": "./", /* Specify the base directory to resolve non-relative module names. */ + // "paths": {}, /* Specify a set of entries that re-map imports to additional lookup locations. */ + // "rootDirs": [], /* Allow multiple folders to be treated as one when resolving modules. */ + // "typeRoots": [], /* Specify multiple folders that act like `./node_modules/@types`. */ + // "types": [], /* Specify type package names to be included without being referenced in a source file. */ + // "allowUmdGlobalAccess": true, /* Allow accessing UMD globals from modules. */ + // "resolveJsonModule": true, /* Enable importing .json files */ + // "noResolve": true, /* Disallow `import`s, `require`s or ``s from expanding the number of files TypeScript should add to a project. */ + + /* JavaScript Support */ + // "allowJs": true, /* Allow JavaScript files to be a part of your program. Use the `checkJS` option to get errors from these files. */ + // "checkJs": true, /* Enable error reporting in type-checked JavaScript files. */ + // "maxNodeModuleJsDepth": 1, /* Specify the maximum folder depth used for checking JavaScript files from `node_modules`. Only applicable with `allowJs`. */ + + /* Emit */ + // "declaration": true, /* Generate .d.ts files from TypeScript and JavaScript files in your project. */ + // "declarationMap": true, /* Create sourcemaps for d.ts files. */ + // "emitDeclarationOnly": true, /* Only output d.ts files and not JavaScript files. */ + // "sourceMap": true, /* Create source map files for emitted JavaScript files. */ + // "outFile": "./", /* Specify a file that bundles all outputs into one JavaScript file. If `declaration` is true, also designates a file that bundles all .d.ts output. */ + // "outDir": "./", /* Specify an output folder for all emitted files. */ + // "removeComments": true, /* Disable emitting comments. */ + // "noEmit": true, /* Disable emitting files from a compilation. */ + // "importHelpers": true, /* Allow importing helper functions from tslib once per project, instead of including them per-file. */ + // "importsNotUsedAsValues": "remove", /* Specify emit/checking behavior for imports that are only used for types */ + // "downlevelIteration": true, /* Emit more compliant, but verbose and less performant JavaScript for iteration. */ + // "sourceRoot": "", /* Specify the root path for debuggers to find the reference source code. */ + // "mapRoot": "", /* Specify the location where debugger should locate map files instead of generated locations. */ + // "inlineSourceMap": true, /* Include sourcemap files inside the emitted JavaScript. */ + // "inlineSources": true, /* Include source code in the sourcemaps inside the emitted JavaScript. */ + // "emitBOM": true, /* Emit a UTF-8 Byte Order Mark (BOM) in the beginning of output files. */ + // "newLine": "crlf", /* Set the newline character for emitting files. */ + // "stripInternal": true, /* Disable emitting declarations that have `@internal` in their JSDoc comments. */ + // "noEmitHelpers": true, /* Disable generating custom helper functions like `__extends` in compiled output. */ + // "noEmitOnError": true, /* Disable emitting files if any type checking errors are reported. */ + // "preserveConstEnums": true, /* Disable erasing `const enum` declarations in generated code. */ + // "declarationDir": "./", /* Specify the output directory for generated declaration files. */ + // "preserveValueImports": true, /* Preserve unused imported values in the JavaScript output that would otherwise be removed. */ + + /* Interop Constraints */ + // "isolatedModules": true, /* Ensure that each file can be safely transpiled without relying on other imports. */ + // "allowSyntheticDefaultImports": true, /* Allow 'import x from y' when a module doesn't have a default export. */ + "esModuleInterop": true, /* Emit additional JavaScript to ease support for importing CommonJS modules. This enables `allowSyntheticDefaultImports` for type compatibility. */ + // "preserveSymlinks": true, /* Disable resolving symlinks to their realpath. This correlates to the same flag in node. */ + "forceConsistentCasingInFileNames": true, /* Ensure that casing is correct in imports. */ + + /* Type Checking */ + "strict": true, /* Enable all strict type-checking options. */ + // "noImplicitAny": true, /* Enable error reporting for expressions and declarations with an implied `any` type.. */ + // "strictNullChecks": true, /* When type checking, take into account `null` and `undefined`. */ + // "strictFunctionTypes": true, /* When assigning functions, check to ensure parameters and the return values are subtype-compatible. */ + // "strictBindCallApply": true, /* Check that the arguments for `bind`, `call`, and `apply` methods match the original function. */ + // "strictPropertyInitialization": true, /* Check for class properties that are declared but not set in the constructor. */ + // "noImplicitThis": true, /* Enable error reporting when `this` is given the type `any`. */ + // "useUnknownInCatchVariables": true, /* Type catch clause variables as 'unknown' instead of 'any'. */ + // "alwaysStrict": true, /* Ensure 'use strict' is always emitted. */ + // "noUnusedLocals": true, /* Enable error reporting when a local variables aren't read. */ + // "noUnusedParameters": true, /* Raise an error when a function parameter isn't read */ + // "exactOptionalPropertyTypes": true, /* Interpret optional property types as written, rather than adding 'undefined'. */ + // "noImplicitReturns": true, /* Enable error reporting for codepaths that do not explicitly return in a function. */ + // "noFallthroughCasesInSwitch": true, /* Enable error reporting for fallthrough cases in switch statements. */ + // "noUncheckedIndexedAccess": true, /* Include 'undefined' in index signature results */ + // "noImplicitOverride": true, /* Ensure overriding members in derived classes are marked with an override modifier. */ + // "noPropertyAccessFromIndexSignature": true, /* Enforces using indexed accessors for keys declared using an indexed type */ + // "allowUnusedLabels": true, /* Disable error reporting for unused labels. */ + // "allowUnreachableCode": true, /* Disable error reporting for unreachable code. */ + + /* Completeness */ + // "skipDefaultLibCheck": true, /* Skip type checking .d.ts files that are included with TypeScript. */ + "skipLibCheck": true /* Skip type checking all .d.ts files. */ + } +} From 8c568682deb9aa5973677beb2da54cb5d69bb315 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Tue, 17 May 2022 13:37:03 -0500 Subject: [PATCH 13/68] First pass with fully working fastify server. --- .../demo/rapids-api-server/package-lock.json | 2886 ----------------- modules/demo/rapids-api-server/package.json | 5 +- .../public/dataset_small.json.txt | 105 + .../routes/graphology/index.js | 124 + .../routes/graphology/root.ts | 91 - modules/demo/rapids-api-server/routes/root.ts | 175 - modules/demo/rapids-api-server/tsconfig.json | 250 +- .../demo/rapids-api-server/util/gpu_cache.js | 91 + modules/demo/rapids-api-server/yarn.lock | 35 + 9 files changed, 514 insertions(+), 3248 deletions(-) delete mode 100644 modules/demo/rapids-api-server/package-lock.json create mode 100644 modules/demo/rapids-api-server/public/dataset_small.json.txt create mode 100644 modules/demo/rapids-api-server/routes/graphology/index.js delete mode 100644 modules/demo/rapids-api-server/routes/graphology/root.ts delete mode 100644 modules/demo/rapids-api-server/routes/root.ts create mode 100644 modules/demo/rapids-api-server/util/gpu_cache.js diff --git a/modules/demo/rapids-api-server/package-lock.json b/modules/demo/rapids-api-server/package-lock.json deleted file mode 100644 index 2ef8010e4..000000000 --- a/modules/demo/rapids-api-server/package-lock.json +++ /dev/null @@ -1,2886 +0,0 @@ -{ - "name": "test", - "version": "1.0.0", - "lockfileVersion": 1, - "requires": true, - "dependencies": { - "@ampproject/remapping": { - "version": "2.2.0", - "resolved": "https://registry.npmjs.org/@ampproject/remapping/-/remapping-2.2.0.tgz", - "integrity": "sha512-qRmjj8nj9qmLTQXXmaR1cck3UXSRMPrbsLJAasZpF+t3riI71BXed5ebIOYwQntykeZuhjsdweEc9BxH5Jc26w==", - "dev": true, - "requires": { - "@jridgewell/gen-mapping": "^0.1.0", - "@jridgewell/trace-mapping": "^0.3.9" - } - }, - "@babel/code-frame": { - "version": "7.16.7", - "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.16.7.tgz", - "integrity": 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-25,6 +25,7 @@ "typescript": "4.6.4" }, "devDependencies": { + "path": "0.12.7", "tap": "^16.1.0" } } diff --git a/modules/demo/rapids-api-server/public/dataset_small.json.txt b/modules/demo/rapids-api-server/public/dataset_small.json.txt new file mode 100644 index 000000000..fbc30ccf0 --- /dev/null +++ b/modules/demo/rapids-api-server/public/dataset_small.json.txt @@ -0,0 +1,105 @@ +{ + "nodes": [ + { + "key": "customer data management", + "label": "Customer data management", + "tag": "Field", + "URL": "https://en.wikipedia.org/wiki/Customer%20data%20management", + "cluster": "7", + "x": -278.2200012207031, + "y": 436.0100402832031, + "score": 0 + }, + { + "key": "educational data mining", + "label": "Educational data mining", + "tag": "Field", + "URL": "https://en.wikipedia.org/wiki/Educational%20data%20mining", + "cluster": "7", + "x": -1.9823756217956543, + "y": 250.4990692138672, + "score": 0 + }, + { + "key": "pathogenomics", + "label": "Pathogenomics", + "tag": "Field", + "URL": "https://en.wikipedia.org/wiki/Pathogenomics", + "cluster": "15", + "x": 959.1505737304688, + "y": -845.7308349609375, + "score": 0 + }, + { + "key": "office suite", + "label": "Office suite", + "tag": "Technology", + "URL": "https://en.wikipedia.org/wiki/Office%20suite", + "cluster": "1", + "x": -768.05224609375, + "y": 397.08294677734375, + "score": 0 + }, + { + "key": "human interactome", + "label": "Human interactome", + "tag": "Concept", + "URL": "https://en.wikipedia.org/wiki/Human%20interactome", + "cluster": "15", + "x": 1014.8722534179688, + "y": -673.8775634765625, + "score": 0 + } + ], + "edges": [ + ["office suite", "human interactome"], + ["educational data mining", "human interactome"], + ["customer data management", "office suite"], + ["educational data mining", "office suite"], + ["pathogenomics", "educational data mining"], + ["pathogenomics", "office suite"], + ["educational data mining", "pathogenomics"], + ["educational data mining", "customer data management"], + ["office suite", "pathogenomics"], + ["customer data management", "pathogenomics"] + ], + "clusters": [ + { "key": "0", "color": "#6c3e81", "clusterLabel": "human interactome" }, + { "key": "1", "color": "#666666", "clusterLabel": "Spreadsheets" }, + { "key": "3", "color": "#57a835", "clusterLabel": "Logic of information" }, + { "key": "4", "color": "#7145cd", "clusterLabel": "Trees and data structures" }, + { "key": "5", "color": "#579f5f", "clusterLabel": "Business intelligence" }, + { "key": "6", "color": "#d043c4", "clusterLabel": "Exploratory data analysis" }, + { "key": "7", "color": "#477028", "clusterLabel": "Softwares and data mining" }, + { "key": "8", "color": "#b174cb", "clusterLabel": "Project management" }, + { "key": "10", "color": "#a4923a", "clusterLabel": "Engineering" }, + { "key": "11", "color": "#5f83cc", "clusterLabel": "Semantic networks" }, + { "key": "12", "color": "#666666", "clusterLabel": "Sociometry" }, + { "key": "13", "color": "#666666", "clusterLabel": "Ideas and concepts" }, + { "key": "14", "color": "#db4139", "clusterLabel": "Arguments / Logic" }, + { "key": "15", "color": "#379982", "clusterLabel": "Scientific classification" }, + { "key": "16", "color": "#666666", "clusterLabel": "Decision trees" }, + { "key": "17", "color": "#666666", "clusterLabel": "Motion perception" }, + { "key": "18", "color": "#c94c83", "clusterLabel": "Artificial intelligence" }, + { "key": "19", "color": "#666666", "clusterLabel": "Linguistics" }, + { "key": "20", "color": "#7c5d28", "clusterLabel": "Collaborative problem solving" }, + { "key": "21", "color": "#a54a49", "clusterLabel": "Knowledge management" }, + { "key": "22", "color": "#666666", "clusterLabel": "Clinical terms and technologies" }, + { "key": "23", "color": "#cf7435", "clusterLabel": "Network Science" }, + { "key": "25", "color": "#666666", "clusterLabel": "Knots" }, + { "key": "24", "color": "#666666", "clusterLabel": "Tensors (mathematics)" } + ], + "tags": [ + { "key": "Chart type", "image": "charttype.svg" }, + { "key": "Company", "image": "company.svg" }, + { "key": "Concept", "image": "concept.svg" }, + { "key": "Field", "image": "field.svg" }, + { "key": "List", "image": "list.svg" }, + { "key": "Method", "image": "method.svg" }, + { "key": "Organization", "image": "organization.svg" }, + { "key": "Person", "image": "person.svg" }, + { "key": "Technology", "image": "technology.svg" }, + { "key": "Tool", "image": "tool.svg" }, + { "key": "unknown", "image": "unknown.svg" } + ] +} diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js new file mode 100644 index 000000000..a257a1589 --- /dev/null +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -0,0 +1,124 @@ +// Copyright (c) 2022, NVIDIA CORPORATION. +// +// Licensed under the Apache License, Version 2.0 (the "License"); +// you may not use this file except in compliance with the License. +// You may obtain a copy of the License at +// +// http://www.apache.org/licenses/LICENSE-2.0 +// +// Unless required by applicable law or agreed to in writing, software +// distributed under the License is distributed on an "AS IS" BASIS, +// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +// See the License for the specific language governing permissions and +// limitations under the License. + +const Fs = require('fs'); +const {Utf8String, Int32, DataFrame, StringSeries, Series, Float64} = require('@rapidsai/cudf'); +const {Field, Vector, List} = require('apache-arrow'); +const Path = require('path'); +const {promisify} = require('util'); +const Stat = promisify(Fs.stat); + +const fastify = require('fastify'); +const gpu_cache = require('../../util/gpu_cache.js'); + +module.exports = async function(fastify, opts) { + fastify.get('/', async function(request, reply) { + return { + graphology: { + description: 'The graphology api provides GPU acceleration of graphology datasets.', + schema: { + read_json: { + filename: 'A URI to a graphology json dataset file.', + returns: 'Result OK/Not Found/Fail' + }, + list_tables: + {returns: 'An object containing graphology related datasets resident on GPU memory.'}, + + ':table': { + ':column': 'The name of the column you want to request.', + returns: 'An arrow buffer of the column contents.' + } + } + } + } + }); + + fastify.route({ + method: 'GET', + url: '/read_json', + schema: { + querystring: {filename: {type: 'string'}, 'rootkeys': {type: 'array'}}, + + response: { + 200: { + type: 'object', + properties: + {success: {type: 'boolean'}, message: {type: 'string'}, params: {type: 'string'}} + } + } + }, + handler: async (request, reply) => { + // load the file via read_text + // is the file local or remote? + let message = 'Unknown error'; + let result = {'params': JSON.stringify(request.query), success: false, message: message}; + + console.log(result); + if (request.query.filename.search('http') != -1) { + message = 'Remote files not supported yet.' + console.log(result); + } else { + message = 'File is not remote'; + console.log(message); + // does the file exist? + const path = Path.join(__dirname, request.query.filename); + console.log('Does the file exist?'); + try { + const stats = await Stat(path); + if (stats == null) { + message = 'File does not exist at ' + path; + console.log(message); + result.message = message; + reply.code(200).send(result); + } else { + // did the file read? + message = 'File is available'; + console.log(message); + result.success = true; + message = 'Successfully parsed json file onto GPU.'; + result.message = message; + const graphology = gpu_cache.readGraphology(path); + gpu_cache.setDataframe('nodes', graphology['nodes']); + gpu_cache.setDataframe('edges', graphology['edges']); + gpu_cache.setDataframe('clusters', graphology['clusters']); + gpu_cache.setDataframe('tags', graphology['tags']); + reply.code(200).send(result); + } + } catch { + message = 'Exception reading file.'; + result.message = message; + reply.code(200).send(result); + }; + } + } + }); + + fastify.route({ + method: 'GET', + url: '/get_column/:table/:column', + schema: {querystring: {table: {type: 'string'}, 'column': {type: 'string'}}}, + handler: async (request, reply) => { + let message = 'Not Implemented'; + let result = {'params': JSON.stringify(request.params), success: false, message: message}; + console.log(request.params.table); + const table = gpu_cache.getDataframe(request.params.table); + console.log(table); + const column = table.get(request.params.column); + console.log(column); + console.log(result); + result.column = column.toArray(); + reply.code(200).send(result); + } + }); +} diff --git a/modules/demo/rapids-api-server/routes/graphology/root.ts b/modules/demo/rapids-api-server/routes/graphology/root.ts deleted file mode 100644 index 996d1f13e..000000000 --- a/modules/demo/rapids-api-server/routes/graphology/root.ts +++ /dev/null @@ -1,91 +0,0 @@ -import { - Bool8, - Column, - DataFrame, - DataType, - Float32, - Float32Series, - Float64, - Float64Series, - Int16, - Int16Series, - Int32, - Int32Series, - Int64, - Int64Series, - Int8, - Int8Series, - Series, - SeriesMap, - StringSeries, - TimestampDay, - TimestampMicrosecond, - TimestampMillisecond, - TimestampNanosecond, - TimestampSecond, - Uint16, - Uint16Series, - Uint32, - Uint32Series, - Uint64, - Uint64Series, - Uint8, - Uint8Series, - Utf8String -} from '@rapidsai/cudf'; - -/* TODO: How do I apply a list of dtypes? - */ -function json_aos_to_dataframe( - str: StringSeries, columns: ReadonlyArray, _: ReadonlyArray): DataFrame { - const arr = {} as SeriesMap; - columns.forEach((col, ix) => { - const no_open_list = str.split('[\n').gather([1], false); - const tokenized = no_open_list.split('},'); - console.log(tokenized.toArray()); - const parse_result = tokenized._col.getJSONObject('.' + columns[ix]); - arr[col] = Series.new(parse_result); - console.log(Series.new(parse_result).toArray()); - }); - const result = new DataFrame(arr); - return result; -} -/* TODO: How do I apply a list of dtypes? - */ -function json_aoa_to_dataframe(str: StringSeries, dtypes: ReadonlyArray): DataFrame { - const arr = {} as SeriesMap; - dtypes.forEach((_, ix) => { - const no_open_list = str.split('[\n').gather([1], false); - const tokenized = no_open_list.split('],'); - const get_ix = `[${ix}]`; - const parse_result = tokenized._col.getJSONObject(get_ix); - arr[ix] = Series.new(parse_result); - }); - const result = new DataFrame(arr); - return result; -} - -module.exports = async function(fastify: any, opts: any) { - fastify.route({ - method: 'GET', - url: '/graphology/read_json/:filename', - schema: { - querystring: {filename: {type: 'string'}}, - - response: { - 200: { - type: 'object', - properties: - {success: {type: 'boolean'}, message: {type: 'string'}, params: {type: 'string'}} - } - } - }, - handler: async (request: any, reply: any) => { - // load the file via read_text - // parse it with json etc - // store the results in a global cache - // return that it is done - return { 'params': request.query.filename, success: false, message: 'Not implemented.' } - } - }); -} diff --git a/modules/demo/rapids-api-server/routes/root.ts b/modules/demo/rapids-api-server/routes/root.ts deleted file mode 100644 index c74945e39..000000000 --- a/modules/demo/rapids-api-server/routes/root.ts +++ /dev/null @@ -1,175 +0,0 @@ -import { - Bool8, - Column, - DataFrame, - DataType, - Float32, - Float32Series, - Float64, - Float64Series, - Int16, - Int16Series, - Int32, - Int32Series, - Int64, - Int64Series, - Int8, - Int8Series, - Series, - SeriesMap, - StringSeries, - TimestampDay, - TimestampMicrosecond, - TimestampMillisecond, - TimestampNanosecond, - TimestampSecond, - Uint16, - Uint16Series, - Uint32, - Uint32Series, - Uint64, - Uint64Series, - Uint8, - Uint8Series, - Utf8String -} from '@rapidsai/cudf'; -import {fstat} from 'fs'; - -const Fs = require('fs'); -const Path = require('path'); - -/* TODO: How do I apply a list of dtypes? - */ -function json_aos_to_dataframe( - str: StringSeries, columns: ReadonlyArray, _: ReadonlyArray): DataFrame { - const arr = {} as SeriesMap; - columns.forEach((col, ix) => { - const no_open_list = str.split('[\n').gather([1], false); - const tokenized = no_open_list.split('},'); - const parse_result = tokenized._col.getJSONObject('.' + columns[ix]); - arr[col] = Series.new(parse_result); - }); - const result = new DataFrame(arr); - return result; -} -/* TODO: How do I apply a list of dtypes? - */ -function json_aoa_to_dataframe(str: StringSeries, dtypes: ReadonlyArray): DataFrame { - const arr = {} as SeriesMap; - dtypes.forEach((_, ix) => { - const no_open_list = str.split('[\n').gather([1], false); - const tokenized = no_open_list.split('],'); - const get_ix = `[${ix}]`; - const parse_result = tokenized._col.getJSONObject(get_ix); - arr[ix] = Series.new(parse_result); - }); - const result = new DataFrame(arr); - return result; -} - -module.exports = async function(fastify: any, opts: any) { - fastify.get('/graphology', async function(request: any, reply: any) { - return { - graphology: { - description: 'The graphology api provides GPU acceleration of graphology datasets.', - schema: { - read_json: { - filename: 'A URI to a graphology json dataset file.', - returns: 'Result OK/Not Found/Fail' - - }, - list_tables: - {returns: 'An object containing graphology related datasets resident on GPU memory.'}, - - ':table': { - ':column': 'The name of the column you want to request.', - returns: 'An arrow buffer of the column contents.' - } - } - } - } - }); - fastify.route({ - method: 'GET', - url: '/graphology/read_json', - schema: { - querystring: {filename: {type: 'string'}, 'rootkeys': {type: 'array'}}, - - response: { - 200: { - type: 'object', - properties: - {success: {type: 'boolean'}, message: {type: 'string'}, params: {type: 'string'}} - } - } - }, - handler: async (request: any, reply: any) => { - // load the file via read_text - // is the file local or remote? - let message: string = 'Unknown error'; - let result = {'params': JSON.stringify(request.query), success: false, message: message}; - - console.log(result); - if (request.query.filename.search('http') != -1) { - message = 'Remote files not supported yet.' - console.log(result); - } else { - message = 'File is not remote'; - // does the file exist? - const path = Path.join(__dirname, request.query.filename); - try { - Fs.stat(path, (err: any, stats: any) => { - if (err) { - message = 'File does not exist at ' + path; - result.message = message; - reply.code(200).send(result); - } else { - // did the file read? - message = 'File is available'; - const dataset = StringSeries.read_text(path, ''); - message = 'File could not be read'; - request.query.rootkeys.reverse().forEach((element: ' string') => { - let split = dataset.split('"tags":'); - const ttags = split.gather([1], false); - let rest = split.gather([0], false); - split = rest.split('"clusters":'); - const tclusters = split.gather([1], false); - rest = split.gather([0], false); - split = rest.split('"edges":'); - const tedges = split.gather([1], false); - rest = split.gather([0], false); - split = rest.split('"nodes":'); - const tnodes = split.gather([1], false); - const tags = - json_aos_to_dataframe(ttags, ['key', 'image'], [new Utf8String, new Utf8String]); - const clusters = json_aos_to_dataframe(tclusters, - ['key', 'color', 'clusterLabel'], - [new Int32, new Utf8String, new Utf8String]); - const nodes = json_aos_to_dataframe( - tnodes, ['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score'], [ - new Utf8String, - new Utf8String, - new Utf8String, - new Utf8String, - new Int32, - new Float64, - new Float64, - new Int32 - ]); - const edges = json_aoa_to_dataframe(tedges, [new Utf8String, new Utf8String]); - }); - result.success = true; - message = 'Successfully parsed json file onto GPU.'; - result.message = message; - reply.code(200).send(result); - } - }); - } catch { - message = 'Exception reading file.'; - result.message = message; - reply.code(200).send(result); - }; - } - } - }); -} diff --git a/modules/demo/rapids-api-server/tsconfig.json b/modules/demo/rapids-api-server/tsconfig.json index 56794816b..dba667980 100644 --- a/modules/demo/rapids-api-server/tsconfig.json +++ b/modules/demo/rapids-api-server/tsconfig.json @@ -1,101 +1,163 @@ { - "compilerOptions": { - /* Visit https://aka.ms/tsconfig.json to read more about this file */ + "include": [ + "modules/*/src/**/*.ts", + ], + "exclude": ["node_modules"], + "compilerOptions": { + "baseUrl": "../../../", + "paths": { + "@rapidsai/core": ["modules/rapids-core/src/index"], + "@rapidsai/core/*": ["modules/rapids-core/src/*"], + "@rapidsai/cuda": ["modules/cuda/src/index"], + "@rapidsai/cuda/*": ["modules/cuda/src/*"], + "@rapidsai/rmm": ["modules/rmm/src/index"], + "@rapidsai/rmm/*": ["modules/rmm/src/*"], 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["node_modules/@deck.gl/test-utils/src/*"], + "@deck.gl/test-utils/dist/esm/*": ["node_modules/@deck.gl/test-utils/src/*"], + "@luma.gl/constants": ["node_modules/@luma.gl/constants/src/index"], + "@luma.gl/constants/dist/es5/*": ["node_modules/@luma.gl/constants/src/*"], + "@luma.gl/constants/dist/es6/*": ["node_modules/@luma.gl/constants/src/*"], + "@luma.gl/constants/dist/esm/*": ["node_modules/@luma.gl/constants/src/*"], + "@luma.gl/core": ["node_modules/@luma.gl/core/src/index"], + "@luma.gl/core/dist/es5/*": ["node_modules/@luma.gl/core/src/*"], + "@luma.gl/core/dist/es6/*": ["node_modules/@luma.gl/core/src/*"], + "@luma.gl/core/dist/esm/*": ["node_modules/@luma.gl/core/src/*"], + "@luma.gl/debug": ["node_modules/@luma.gl/debug/src/index"], + "@luma.gl/debug/dist/es5/*": ["node_modules/@luma.gl/debug/src/*"], + "@luma.gl/debug/dist/es6/*": ["node_modules/@luma.gl/debug/src/*"], + "@luma.gl/debug/dist/esm/*": ["node_modules/@luma.gl/debug/src/*"], + "@luma.gl/engine": ["node_modules/@luma.gl/engine/src/index"], + "@luma.gl/engine/dist/es5/*": ["node_modules/@luma.gl/engine/src/*"], + "@luma.gl/engine/dist/es6/*": ["node_modules/@luma.gl/engine/src/*"], + "@luma.gl/engine/dist/esm/*": ["node_modules/@luma.gl/engine/src/*"], + "@luma.gl/experimental": ["node_modules/@luma.gl/experimental/src/index"], + "@luma.gl/experimental/dist/es5/*": ["node_modules/@luma.gl/experimental/src/*"], + "@luma.gl/experimental/dist/es6/*": ["node_modules/@luma.gl/experimental/src/*"], + "@luma.gl/experimental/dist/esm/*": ["node_modules/@luma.gl/experimental/src/*"], + "@luma.gl/gltools": ["node_modules/@luma.gl/gltools/src/index"], + "@luma.gl/gltools/dist/es5/*": ["node_modules/@luma.gl/gltools/src/*"], + "@luma.gl/gltools/dist/es6/*": ["node_modules/@luma.gl/gltools/src/*"], + "@luma.gl/gltools/dist/esm/*": ["node_modules/@luma.gl/gltools/src/*"], + "@luma.gl/shadertools": ["node_modules/@luma.gl/shadertools/src/index"], + "@luma.gl/shadertools/dist/es5/*": ["node_modules/@luma.gl/shadertools/src/*"], + "@luma.gl/shadertools/dist/es6/*": ["node_modules/@luma.gl/shadertools/src/*"], + "@luma.gl/shadertools/dist/esm/*": ["node_modules/@luma.gl/shadertools/src/*"], + "@luma.gl/test-utils": ["node_modules/@luma.gl/test-utils/src/index"], + "@luma.gl/test-utils/dist/es5/*": ["node_modules/@luma.gl/test-utils/src/*"], + "@luma.gl/test-utils/dist/es6/*": ["node_modules/@luma.gl/test-utils/src/*"], + "@luma.gl/test-utils/dist/esm/*": ["node_modules/@luma.gl/test-utils/src/*"], + "@luma.gl/webgl": ["node_modules/@luma.gl/webgl/src/index"], + "@luma.gl/webgl/dist/es5/*": ["node_modules/@luma.gl/webgl/src/*"], + "@luma.gl/webgl/dist/es6/*": ["node_modules/@luma.gl/webgl/src/*"], + "@luma.gl/webgl/dist/esm/*": ["node_modules/@luma.gl/webgl/src/*"], + }, + "target": "ESNEXT", + "module": "commonjs", + "outDir": "./build/js", - /* Projects */ - // "incremental": true, /* Enable incremental compilation */ - // "composite": true, /* Enable constraints that allow a TypeScript project to be used with project references. */ - // "tsBuildInfoFile": "./", /* Specify the folder for .tsbuildinfo incremental compilation files. */ - // "disableSourceOfProjectReferenceRedirect": true, /* Disable preferring source files instead of declaration files when referencing composite projects */ - // "disableSolutionSearching": true, /* Opt a project out of multi-project reference checking when editing. */ - // "disableReferencedProjectLoad": true, /* Reduce the number of projects loaded automatically by TypeScript. */ + /* Decorators */ + "experimentalDecorators": true, - /* Language and Environment */ - "target": "es2016", /* Set the JavaScript language version for emitted JavaScript and include compatible library declarations. */ - // "lib": [], /* Specify a set of bundled library declaration files that describe the target runtime environment. */ - // "jsx": "preserve", /* Specify what JSX code is generated. */ - // "experimentalDecorators": true, /* Enable experimental support for TC39 stage 2 draft decorators. */ - // "emitDecoratorMetadata": true, /* Emit design-type metadata for decorated declarations in source files. */ - // "jsxFactory": "", /* Specify the JSX factory function used when targeting React JSX emit, e.g. 'React.createElement' or 'h' */ - // "jsxFragmentFactory": "", /* Specify the JSX Fragment reference used for fragments when targeting React JSX emit e.g. 'React.Fragment' or 'Fragment'. */ - // "jsxImportSource": "", /* Specify module specifier used to import the JSX factory functions when using `jsx: react-jsx*`.` */ - // "reactNamespace": "", /* Specify the object invoked for `createElement`. This only applies when targeting `react` JSX emit. */ - // "noLib": true, /* Disable including any library files, including the default lib.d.ts. */ - // "useDefineForClassFields": true, /* Emit ECMAScript-standard-compliant class fields. */ + /* Basic stuff */ + "moduleResolution": "node", + "skipLibCheck": true, + "skipDefaultLibCheck": true, + "lib": ["dom", "esnext", "esnext.asynciterable"], - /* Modules */ - "module": "commonjs", /* Specify what module code is generated. */ - // "rootDir": "./", /* Specify the root folder within your source files. */ - // "moduleResolution": "node", /* Specify how TypeScript looks up a file from a given module specifier. */ - // "baseUrl": "./", /* Specify the base directory to resolve non-relative module names. */ - // "paths": {}, /* Specify a set of entries that re-map imports to additional lookup locations. */ - // "rootDirs": [], /* Allow multiple folders to be treated as one when resolving modules. */ - // "typeRoots": [], /* Specify multiple folders that act like `./node_modules/@types`. */ - // "types": [], /* Specify type package names to be included without being referenced in a source file. */ - // "allowUmdGlobalAccess": true, /* Allow accessing UMD globals from modules. */ - // "resolveJsonModule": true, /* Enable importing .json files */ - // "noResolve": true, /* Disallow `import`s, `require`s or ``s from expanding the number of files TypeScript should add to a project. */ + /* Control what is emitted */ + "declaration": true, + "noEmitOnError": true, + "removeComments": false, + "downlevelIteration": true, - /* JavaScript Support */ - // "allowJs": true, /* Allow JavaScript files to be a part of your program. Use the `checkJS` option to get errors from these files. */ - // "checkJs": true, /* Enable error reporting in type-checked JavaScript files. */ - // "maxNodeModuleJsDepth": 1, /* Specify the maximum folder depth used for checking JavaScript files from `node_modules`. Only applicable with `allowJs`. */ + /* Create inline sourcemaps with sources */ + "sourceMap": false, + "inlineSources": true, + "inlineSourceMap": true, - /* Emit */ - // "declaration": true, /* Generate .d.ts files from TypeScript and JavaScript files in your project. */ - // "declarationMap": true, /* Create sourcemaps for d.ts files. */ - // "emitDeclarationOnly": true, /* Only output d.ts files and not JavaScript files. */ - // "sourceMap": true, /* Create source map files for emitted JavaScript files. */ - // "outFile": "./", /* Specify a file that bundles all outputs into one JavaScript file. If `declaration` is true, also designates a file that bundles all .d.ts output. */ - // "outDir": "./", /* Specify an output folder for all emitted files. */ - // "removeComments": true, /* Disable emitting comments. */ - // "noEmit": true, /* Disable emitting files from a compilation. */ - // "importHelpers": true, /* Allow importing helper functions from tslib once per project, instead of including them per-file. */ - // "importsNotUsedAsValues": "remove", /* Specify emit/checking behavior for imports that are only used for types */ - // "downlevelIteration": true, /* Emit more compliant, but verbose and less performant JavaScript for iteration. */ - // "sourceRoot": "", /* Specify the root path for debuggers to find the reference source code. */ - // "mapRoot": "", /* Specify the location where debugger should locate map files instead of generated locations. */ - // "inlineSourceMap": true, /* Include sourcemap files inside the emitted JavaScript. */ - // "inlineSources": true, /* Include source code in the sourcemaps inside the emitted JavaScript. */ - // "emitBOM": true, /* Emit a UTF-8 Byte Order Mark (BOM) in the beginning of output files. */ - // "newLine": "crlf", /* Set the newline character for emitting files. */ - // "stripInternal": true, /* Disable emitting declarations that have `@internal` in their JSDoc comments. */ - // "noEmitHelpers": true, /* Disable generating custom helper functions like `__extends` in compiled output. */ - // "noEmitOnError": true, /* Disable emitting files if any type checking errors are reported. */ - // "preserveConstEnums": true, /* Disable erasing `const enum` declarations in generated code. */ - // "declarationDir": "./", /* Specify the output directory for generated declaration files. */ - // "preserveValueImports": true, /* Preserve unused imported values in the JavaScript output that would otherwise be removed. */ - - /* Interop Constraints */ - // "isolatedModules": true, /* Ensure that each file can be safely transpiled without relying on other imports. */ - // "allowSyntheticDefaultImports": true, /* Allow 'import x from y' when a module doesn't have a default export. */ - "esModuleInterop": true, /* Emit additional JavaScript to ease support for importing CommonJS modules. This enables `allowSyntheticDefaultImports` for type compatibility. */ - // "preserveSymlinks": true, /* Disable resolving symlinks to their realpath. This correlates to the same flag in node. */ - "forceConsistentCasingInFileNames": true, /* Ensure that casing is correct in imports. */ - - /* Type Checking */ - "strict": true, /* Enable all strict type-checking options. */ - // "noImplicitAny": true, /* Enable error reporting for expressions and declarations with an implied `any` type.. */ - // "strictNullChecks": true, /* When type checking, take into account `null` and `undefined`. */ - // "strictFunctionTypes": true, /* When assigning functions, check to ensure parameters and the return values are subtype-compatible. */ - // "strictBindCallApply": true, /* Check that the arguments for `bind`, `call`, and `apply` methods match the original function. */ - // "strictPropertyInitialization": true, /* Check for class properties that are declared but not set in the constructor. */ - // "noImplicitThis": true, /* Enable error reporting when `this` is given the type `any`. */ - // "useUnknownInCatchVariables": true, /* Type catch clause variables as 'unknown' instead of 'any'. */ - // "alwaysStrict": true, /* Ensure 'use strict' is always emitted. */ - // "noUnusedLocals": true, /* Enable error reporting when a local variables aren't read. */ - // "noUnusedParameters": true, /* Raise an error when a function parameter isn't read */ - // "exactOptionalPropertyTypes": true, /* Interpret optional property types as written, rather than adding 'undefined'. */ - // "noImplicitReturns": true, /* Enable error reporting for codepaths that do not explicitly return in a function. */ - // "noFallthroughCasesInSwitch": true, /* Enable error reporting for fallthrough cases in switch statements. */ - // "noUncheckedIndexedAccess": true, /* Include 'undefined' in index signature results */ - // "noImplicitOverride": true, /* Ensure overriding members in derived classes are marked with an override modifier. */ - // "noPropertyAccessFromIndexSignature": true, /* Enforces using indexed accessors for keys declared using an indexed type */ - // "allowUnusedLabels": true, /* Disable error reporting for unused labels. */ - // "allowUnreachableCode": true, /* Disable error reporting for unreachable code. */ - - /* Completeness */ - // "skipDefaultLibCheck": true, /* Skip type checking .d.ts files that are included with TypeScript. */ - "skipLibCheck": true /* Skip type checking all .d.ts files. */ - } + /* The most restrictive settings possible */ + "strict": true, + "importHelpers": true, + "noEmitHelpers": true, + "noImplicitAny": true, + "noUnusedLocals": true, + "noImplicitReturns": true, + "allowUnusedLabels": false, + "noUnusedParameters": true, + "allowUnreachableCode": false, + "noFallthroughCasesInSwitch": true, + "forceConsistentCasingInFileNames": true + } } diff --git a/modules/demo/rapids-api-server/util/gpu_cache.js b/modules/demo/rapids-api-server/util/gpu_cache.js new file mode 100644 index 000000000..88ce1a75e --- /dev/null +++ b/modules/demo/rapids-api-server/util/gpu_cache.js @@ -0,0 +1,91 @@ +// Copyright (c) 2022, NVIDIA CORPORATION. +// +// Licensed under the Apache License, Version 2.0 (the "License"); +// you may not use this file except in compliance with the License. +// You may obtain a copy of the License at +// +// http://www.apache.org/licenses/LICENSE-2.0 +// +// Unless required by applicable law or agreed to in writing, software +// distributed under the License is distributed on an "AS IS" BASIS, +// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +// See the License for the specific language governing permissions and +// limitations under the License. + +const {Utf8String, Int32, DataFrame, StringSeries, Series, Float64} = require('@rapidsai/cudf'); + +let timeout = -1; +let datasets = {}; + +function clearCachedGPUData() { + datasets.keys().forall(key => { datasets[key] = null; }); +}; + +/* TODO: How do I apply a list of dtypes? + */ +function json_aos_to_dataframe(str, columns, _) { + let arr = {}; + columns.forEach((col, ix) => { + const no_open_list = str.split('[\n').gather([1], false); + const tokenized = no_open_list.split('},'); + const parse_result = tokenized._col.getJSONObject('.' + columns[ix]); + arr[col] = Series.new(parse_result); + }); + const result = new DataFrame(arr); + return result; +} +/* TODO: How do I apply a list of dtypes? + */ +function json_aoa_to_dataframe(str, dtypes) { + let arr = {}; + dtypes.forEach((_, ix) => { + const no_open_list = str.split('[\n').gather([1], false); + const tokenized = no_open_list.split('],'); + const get_ix = `[${ix}]`; + const parse_result = tokenized._col.getJSONObject(get_ix); + arr[ix] = Series.new(parse_result); + }); + const result = new DataFrame(arr); + return result; +} + +module.exports = { +setDataframe(name, dataframe) { + if (timeout) { clearTimeout(timeout); } + timeout = setTimeout(clearCachedGPUData, 10 * 60 * 1000); + datasets[name] = dataframe; + console.log(datasets); +}, +getDataframe(name) { return datasets[name] }, +readGraphology(path) { + console.log('readGraphology'); + const dataset = StringSeries.read_text(path, ''); + let split = dataset.split('"tags":'); + const ttags = split.gather([1], false); + let rest = split.gather([0], false); + split = rest.split('"clusters":'); + const tclusters = split.gather([1], false); + rest = split.gather([0], false); + split = rest.split('"edges":'); + const tedges = split.gather([1], false); + rest = split.gather([0], false); + split = rest.split('"nodes":'); + const tnodes = split.gather([1], false); + const tags = json_aos_to_dataframe(ttags, ['key', 'image'], [new Utf8String, new Utf8String]); + const clusters = json_aos_to_dataframe( + tclusters, ['key', 'color', 'clusterLabel'], [new Int32, new Utf8String, new Utf8String]); + const nodes = + json_aos_to_dataframe(tnodes, ['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score'], [ + new Utf8String, + new Utf8String, + new Utf8String, + new Utf8String, + new Int32, + new Float64, + new Float64, + new Int32 + ]); + const edges = json_aoa_to_dataframe(tedges, [new Utf8String, new Utf8String]); + return {nodes: nodes, edges:edges, tags:tags, clusters:clusters}; +} +} diff --git a/modules/demo/rapids-api-server/yarn.lock b/modules/demo/rapids-api-server/yarn.lock index 615b4aae7..54591b98e 100644 --- a/modules/demo/rapids-api-server/yarn.lock +++ b/modules/demo/rapids-api-server/yarn.lock @@ -342,6 +342,11 @@ "@jridgewell/resolve-uri" "^3.0.3" "@jridgewell/sourcemap-codec" "^1.4.10" +"@types/node@17.0.33": + version "17.0.33" + resolved "https://registry.npmjs.org/@types/node/-/node-17.0.33.tgz#3c1879b276dc63e73030bb91165e62a4509cd506" + integrity sha512-miWq2m2FiQZmaHfdZNcbpp9PuXg34W5JZ5CrJ/BaS70VuhoJENBEQybeiYSaPBRNq6KQGnjfEnc/F3PN++D+XQ== + "@types/prop-types@*": version "15.7.5" resolved "https://registry.npmjs.org/@types/prop-types/-/prop-types-15.7.5.tgz#5f19d2b85a98e9558036f6a3cacc8819420f05cf" @@ -1153,6 +1158,11 @@ inherits@2, inherits@2.0.4, inherits@^2.0.3: resolved "https://registry.npmjs.org/inherits/-/inherits-2.0.4.tgz#0fa2c64f932917c3433a0ded55363aae37416b7c" integrity sha512-k/vGaX4/Yla3WzyMCvTQOXYeIHvqOKtnqBduzTHpzpQZzAskKMhZ2K+EnBiSM9zGSoIFeMpXKxa4dYeZIQqewQ== +inherits@2.0.3: + version "2.0.3" + resolved "https://registry.npmjs.org/inherits/-/inherits-2.0.3.tgz#633c2c83e3da42a502f52466022480f4208261de" + integrity sha1-Yzwsg+PaQqUC9SRmAiSA9CCCYd4= + ink@^3.2.0: version "3.2.0" resolved "https://registry.npmjs.org/ink/-/ink-3.2.0.tgz#434793630dc57d611c8fe8fffa1db6b56f1a16bb" @@ -1661,6 +1671,14 @@ path-key@^3.1.0: resolved "https://registry.npmjs.org/path-key/-/path-key-3.1.1.tgz#581f6ade658cbba65a0d3380de7753295054f375" integrity sha512-ojmeN0qd+y0jszEtoY48r0Peq5dwMEkIlCOu6Q5f41lfkswXuKtYrhgoTpLnyIcHm24Uhqx+5Tqm2InSwLhE6Q== +path@0.12.7: + version "0.12.7" + resolved "https://registry.npmjs.org/path/-/path-0.12.7.tgz#d4dc2a506c4ce2197eb481ebfcd5b36c0140b10f" + integrity sha1-1NwqUGxM4hl+tIHr/NWzbAFAsQ8= + dependencies: + process "^0.11.1" + util "^0.10.3" + picocolors@^1.0.0: version "1.0.0" resolved "https://registry.npmjs.org/picocolors/-/picocolors-1.0.0.tgz#cb5bdc74ff3f51892236eaf79d68bc44564ab81c" @@ -1738,6 +1756,11 @@ process-warning@^1.0.0: resolved "https://registry.npmjs.org/process-warning/-/process-warning-1.0.0.tgz#980a0b25dc38cd6034181be4b7726d89066b4616" integrity sha512-du4wfLyj4yCZq1VupnVSZmRsPJsNuxoDQFdCFHLaYiEbFBD7QE0a+I4D7hOxrVnh78QE/YipFAj9lXHiXocV+Q== +process@^0.11.1: + version "0.11.10" + resolved "https://registry.npmjs.org/process/-/process-0.11.10.tgz#7332300e840161bda3e69a1d1d91a7d4bc16f182" + integrity sha1-czIwDoQBYb2j5podHZGn1LwW8YI= + proxy-addr@^2.0.7: version "2.0.7" resolved "https://registry.npmjs.org/proxy-addr/-/proxy-addr-2.0.7.tgz#f19fe69ceab311eeb94b42e70e8c2070f9ba1025" @@ -2241,6 +2264,11 @@ typedarray-to-buffer@^3.1.5: dependencies: is-typedarray "^1.0.0" +typescript@4.6.4: + version "4.6.4" + resolved "https://registry.npmjs.org/typescript/-/typescript-4.6.4.tgz#caa78bbc3a59e6a5c510d35703f6a09877ce45e9" + integrity sha512-9ia/jWHIEbo49HfjrLGfKbZSuWo9iTMwXO+Ca3pRsSpbsMbc7/IU8NKdCZVRRBafVPGnoJeFL76ZOAA84I9fEg== + unicode-length@^2.0.2: version "2.0.2" resolved "https://registry.npmjs.org/unicode-length/-/unicode-length-2.0.2.tgz#e5eb4c0d523fdf7bebb59ca261c9ca1cf732da96" @@ -2261,6 +2289,13 @@ util-deprecate@^1.0.1: resolved "https://registry.npmjs.org/util-deprecate/-/util-deprecate-1.0.2.tgz#450d4dc9fa70de732762fbd2d4a28981419a0ccf" integrity sha1-RQ1Nyfpw3nMnYvvS1KKJgUGaDM8= +util@^0.10.3: + version "0.10.4" + resolved "https://registry.npmjs.org/util/-/util-0.10.4.tgz#3aa0125bfe668a4672de58857d3ace27ecb76901" + integrity sha512-0Pm9hTQ3se5ll1XihRic3FDIku70C+iHUdT/W926rSgHV5QgXsYbKZN8MSC3tJtSkhuROzvsQjAaFENRXr+19A== + dependencies: + inherits "2.0.3" + uuid@^3.3.3: version "3.4.0" resolved "https://registry.npmjs.org/uuid/-/uuid-3.4.0.tgz#b23e4358afa8a202fe7a100af1f5f883f02007ee" From 233606d2041f91a1f6281ec11b55e9c5ef5cc9f0 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Tue, 17 May 2022 17:03:29 -0500 Subject: [PATCH 14/68] Trying to add fastify-arrow now --- modules/demo/rapids-api-server/package.json | 1 + .../routes/graphology/index.js | 46 +++- modules/demo/rapids-api-server/routes/root.js | 38 ++++ modules/demo/rapids-api-server/yarn.lock | 205 +++++++++++++++++- 4 files changed, 276 insertions(+), 14 deletions(-) create mode 100644 modules/demo/rapids-api-server/routes/root.js diff --git a/modules/demo/rapids-api-server/package.json b/modules/demo/rapids-api-server/package.json index c96d99946..63ab69aac 100644 --- a/modules/demo/rapids-api-server/package.json +++ b/modules/demo/rapids-api-server/package.json @@ -20,6 +20,7 @@ "@fastify/sensible": "^4.0.0", "@types/node": "17.0.33", "fastify": "^3.0.0", + "fastify-arrow": "0.1.0", "fastify-cli": "^3.0.1", "fastify-plugin": "^3.0.0", "typescript": "4.6.4" diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index a257a1589..56e48e3e6 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -14,15 +14,18 @@ const Fs = require('fs'); const {Utf8String, Int32, DataFrame, StringSeries, Series, Float64} = require('@rapidsai/cudf'); -const {Field, Vector, List} = require('apache-arrow'); -const Path = require('path'); -const {promisify} = require('util'); -const Stat = promisify(Fs.stat); +const {RecordBatchStreamWriter, Field, Vector, List} = require('apache-arrow'); +const pipeline = require('util').promisify(require('stream').pipeline); +const Path = require('path'); +const {promisify} = require('util'); +const Stat = promisify(Fs.stat); -const fastify = require('fastify'); -const gpu_cache = require('../../util/gpu_cache.js'); +const fastify = require('fastify'); +const arrowPlugin = require('fastify-arrow'); +const gpu_cache = require('../../util/gpu_cache.js'); module.exports = async function(fastify, opts) { + fastify.register(arrowPlugin); fastify.get('/', async function(request, reply) { return { graphology: { @@ -108,17 +111,36 @@ module.exports = async function(fastify, opts) { method: 'GET', url: '/get_column/:table/:column', schema: {querystring: {table: {type: 'string'}, 'column': {type: 'string'}}}, - handler: async (request, reply) => { + handler: (request, reply) => { let message = 'Not Implemented'; let result = {'params': JSON.stringify(request.params), success: false, message: message}; console.log(request.params.table); const table = gpu_cache.getDataframe(request.params.table); console.log(table); - const column = table.get(request.params.column); - console.log(column); - console.log(result); - result.column = column.toArray(); - reply.code(200).send(result); + if (table == undefined) { + result.message = 'Table not found'; + reply.code(404).send(result); + } else { + const column = table.get(request.params.column); + console.log(column); + console.log(result); + console.log('reply.stream()'); + console.log('reply.streamed'); + console.log(column.toArrow()); + console.log(column.toArrow().values.length); + // reply.code(200).send(column.toArray()); + // reply.header('Content-Type', 'Application/octet-stream'); + // reply.header('Accepts', 'Application/octet-stream'); + // reply.code(200); + // reply.header('Content-Length', column.toArrow().values.length); + RecordBatchStreamWriter.writeAll(column.toArrow()).pipe(reply.stream({objectMode: false})); + } } }); + fastify.inject({ + method: 'GET', + url: '/get_column/:table/:column', + headers: {'accepts': 'application/octet-stream'} + }, + (err, res) => {}); } diff --git a/modules/demo/rapids-api-server/routes/root.js b/modules/demo/rapids-api-server/routes/root.js new file mode 100644 index 000000000..a365538ed --- /dev/null +++ b/modules/demo/rapids-api-server/routes/root.js @@ -0,0 +1,38 @@ +// Copyright (c) 2022, NVIDIA CORPORATION. +// +// Licensed under the Apache License, Version 2.0 (the "License"); +// you may not use this file except in compliance with the License. +// You may obtain a copy of the License at +// +// http://www.apache.org/licenses/LICENSE-2.0 +// +// Unless required by applicable law or agreed to in writing, software +// distributed under the License is distributed on an "AS IS" BASIS, +// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +// See the License for the specific language governing permissions and +// limitations under the License. + +const fastify = require('fastify'); + +module.exports = async function(fastify, opts) { + fastify.get('/', async function(request, reply) { + return { + graphology: { + description: 'The graphology api provides GPU acceleration of graphology datasets.', + schema: { + read_json: { + filename: 'A URI to a graphology json dataset file.', + returns: 'Result OK/Not Found/Fail' + }, + list_tables: + {returns: 'An object containing graphology related datasets resident on GPU memory.'}, + + ':table': { + ':column': 'The name of the column you want to request.', + returns: 'An arrow buffer of the column contents.' + } + } + } + } + }); +} diff --git a/modules/demo/rapids-api-server/yarn.lock b/modules/demo/rapids-api-server/yarn.lock index 54591b98e..a87009d49 100644 --- a/modules/demo/rapids-api-server/yarn.lock +++ b/modules/demo/rapids-api-server/yarn.lock @@ -342,11 +342,26 @@ "@jridgewell/resolve-uri" "^3.0.3" "@jridgewell/sourcemap-codec" "^1.4.10" +"@types/flatbuffers@^1.10.0": + version "1.10.0" + resolved "https://registry.npmjs.org/@types/flatbuffers/-/flatbuffers-1.10.0.tgz#aa74e30ffdc86445f2f060e1808fc9d56b5603ba" + integrity sha512-7btbphLrKvo5yl/5CC2OCxUSMx1wV1wvGT1qDXkSt7yi00/YW7E8k6qzXqJHsp+WU0eoG7r6MTQQXI9lIvd0qA== + "@types/node@17.0.33": version "17.0.33" resolved "https://registry.npmjs.org/@types/node/-/node-17.0.33.tgz#3c1879b276dc63e73030bb91165e62a4509cd506" integrity 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"https://registry.npmjs.org/find-up/-/find-up-3.0.0.tgz#49169f1d7993430646da61ecc5ae355c21c97b73" @@ -996,6 +1109,11 @@ findit@^2.0.0: resolved "https://registry.npmjs.org/findit/-/findit-2.0.0.tgz#6509f0126af4c178551cfa99394e032e13a4d56e" integrity sha1-ZQnwEmr0wXhVHPqZOU4DLhOk1W4= +flatbuffers@1.12.0: + version "1.12.0" + resolved "https://registry.npmjs.org/flatbuffers/-/flatbuffers-1.12.0.tgz#72e87d1726cb1b216e839ef02658aa87dcef68aa" + integrity sha512-c7CZADjRcl6j0PlvFy0ZqXQ67qSEZfrVPynmnL+2zPc+NtMvrF8Y0QceMo7QqnSPc7+uWjUIAbvCQ5WIKlMVdQ== + flatstr@^1.0.12: version "1.0.12" resolved "https://registry.npmjs.org/flatstr/-/flatstr-1.0.12.tgz#c2ba6a08173edbb6c9640e3055b95e287ceb5931" @@ -1119,6 +1237,11 @@ help-me@^3.0.0: glob "^7.1.6" readable-stream "^3.6.0" +hexoid@^1.0.0: + version "1.0.0" + resolved "https://registry.npmjs.org/hexoid/-/hexoid-1.0.0.tgz#ad10c6573fb907de23d9ec63a711267d9dc9bc18" + integrity 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lodash.flattendeep "^4.4.0" release-zalgo "^1.0.0" +pad-left@^2.1.0: + version "2.1.0" + resolved "https://registry.npmjs.org/pad-left/-/pad-left-2.1.0.tgz#16e6a3b2d44a8e138cb0838cc7cb403a4fc9e994" + integrity sha1-FuajstRKjhOMsIOMx8tAOk/J6ZQ= + dependencies: + repeat-string "^1.5.4" + parse-ms@^2.1.0: version "2.1.0" resolved "https://registry.npmjs.org/parse-ms/-/parse-ms-2.1.0.tgz#348565a753d4391fa524029956b172cb7753097d" @@ -1840,6 +1988,11 @@ redeyed@~2.1.0: dependencies: esprima "~4.0.0" +reduce-flatten@^2.0.0: + version "2.0.0" + resolved "https://registry.npmjs.org/reduce-flatten/-/reduce-flatten-2.0.0.tgz#734fd84e65f375d7ca4465c69798c25c9d10ae27" + integrity sha512-EJ4UNY/U1t2P/2k6oqotuX2Cc3T6nxJwsM0N0asT7dhrtH1ltUxDn4NalSYmPE2rCkVpcf/X6R0wDwcFpzhd4w== + release-zalgo@^1.0.0: version "1.0.0" resolved "https://registry.npmjs.org/release-zalgo/-/release-zalgo-1.0.0.tgz#09700b7e5074329739330e535c5a90fb67851730" @@ -1847,6 +2000,11 @@ release-zalgo@^1.0.0: dependencies: es6-error "^4.0.1" +repeat-string@^1.5.4: + version "1.6.1" + resolved "https://registry.npmjs.org/repeat-string/-/repeat-string-1.6.1.tgz#8dcae470e1c88abc2d600fff4a776286da75e637" + integrity sha1-jcrkcOHIirwtYA//Sndihtp15jc= + require-directory@^2.1.1: version "2.1.1" resolved "https://registry.npmjs.org/require-directory/-/require-directory-2.1.1.tgz#8c64ad5fd30dab1c976e2344ffe7f792a6a6df42" @@ -2057,6 +2215,16 @@ statuses@2.0.1: resolved "https://registry.npmjs.org/statuses/-/statuses-2.0.1.tgz#55cb000ccf1d48728bd23c685a063998cf1a1b63" integrity sha512-RwNA9Z/7PrK06rYLIzFMlaF+l73iwpzsqRIFgbMLbTcLD6cOao82TaWefPXQvB2fOC4AjuYSEndS7N/mTCbkdQ== +stream-wormhole@^1.1.0: + version "1.1.0" + resolved "https://registry.npmjs.org/stream-wormhole/-/stream-wormhole-1.1.0.tgz#300aff46ced553cfec642a05251885417693c33d" + integrity sha512-gHFfL3px0Kctd6Po0M8TzEvt3De/xu6cnRrjlfYNhwbhLPLwigI2t1nc6jrzNuaYg5C4YF78PPFuQPzRiqn9ew== + +streamsearch@0.1.2: + version "0.1.2" + resolved "https://registry.npmjs.org/streamsearch/-/streamsearch-0.1.2.tgz#808b9d0e56fc273d809ba57338e929919a1a9f1a" + integrity sha1-gIudDlb8Jz2Am6VzOOkpkZoanxo= + string-similarity@^4.0.1: version "4.0.4" resolved "https://registry.npmjs.org/string-similarity/-/string-similarity-4.0.4.tgz#42d01ab0b34660ea8a018da8f56a3309bb8b2a5b" @@ -2111,6 +2279,16 @@ supports-color@^7.1.0: dependencies: has-flag "^4.0.0" +table-layout@^1.0.1: + version "1.0.2" + resolved "https://registry.npmjs.org/table-layout/-/table-layout-1.0.2.tgz#c4038a1853b0136d63365a734b6931cf4fad4a04" + integrity sha512-qd/R7n5rQTRFi+Zf2sk5XVVd9UQl6ZkduPFC3S7WEGJAmetDTjY3qPN50eSKzwuzEyQKy5TN2TiZdkIjos2L6A== + dependencies: + array-back "^4.0.1" + deep-extend "~0.6.0" + typical "^5.2.0" + wordwrapjs "^4.0.0" + tap-mocha-reporter@^5.0.3: version "5.0.3" resolved "https://registry.npmjs.org/tap-mocha-reporter/-/tap-mocha-reporter-5.0.3.tgz#3e261b2a43092ba8bc0cb67a89b33e283decee05" @@ -2234,6 +2412,11 @@ trivial-deferred@^1.0.1: resolved "https://registry.npmjs.org/trivial-deferred/-/trivial-deferred-1.0.1.tgz#376d4d29d951d6368a6f7a0ae85c2f4d5e0658f3" integrity sha1-N21NKdlR1jaKb3oK6FwvTV4GWPM= +tslib@^2.3.0: + version "2.4.0" + resolved "https://registry.npmjs.org/tslib/-/tslib-2.4.0.tgz#7cecaa7f073ce680a05847aa77be941098f36dc3" + integrity sha512-d6xOpEDfsi2CZVlPQzGeux8XMwLT9hssAsaPYExaQMuYskwb+x1x7J371tWlbBdWHroy99KnVB6qIkUbs5X3UQ== + type-fest@^0.12.0: version "0.12.0" resolved "https://registry.npmjs.org/type-fest/-/type-fest-0.12.0.tgz#f57a27ab81c68d136a51fd71467eff94157fa1ee" @@ -2269,6 +2452,16 @@ typescript@4.6.4: resolved "https://registry.npmjs.org/typescript/-/typescript-4.6.4.tgz#caa78bbc3a59e6a5c510d35703f6a09877ce45e9" integrity sha512-9ia/jWHIEbo49HfjrLGfKbZSuWo9iTMwXO+Ca3pRsSpbsMbc7/IU8NKdCZVRRBafVPGnoJeFL76ZOAA84I9fEg== +typical@^4.0.0: + version "4.0.0" + resolved "https://registry.npmjs.org/typical/-/typical-4.0.0.tgz#cbeaff3b9d7ae1e2bbfaf5a4e6f11eccfde94fc4" + integrity sha512-VAH4IvQ7BDFYglMd7BPRDfLgxZZX4O4TFcRDA6EN5X7erNJJq+McIEp8np9aVtxrCJ6qx4GTYVfOWNjcqwZgRw== + +typical@^5.2.0: + version "5.2.0" + resolved "https://registry.npmjs.org/typical/-/typical-5.2.0.tgz#4daaac4f2b5315460804f0acf6cb69c52bb93066" + integrity sha512-dvdQgNDNJo+8B2uBQoqdb11eUCE1JQXhvjC/CZtgvZseVd5TYMXnq0+vuUemXbd/Se29cTaUuPX3YIc2xgbvIg== + unicode-length@^2.0.2: version "2.0.2" resolved "https://registry.npmjs.org/unicode-length/-/unicode-length-2.0.2.tgz#e5eb4c0d523fdf7bebb59ca261c9ca1cf732da96" @@ -2332,6 +2525,14 @@ widest-line@^3.1.0: dependencies: string-width "^4.0.0" +wordwrapjs@^4.0.0: + version "4.0.1" + resolved "https://registry.npmjs.org/wordwrapjs/-/wordwrapjs-4.0.1.tgz#d9790bccfb110a0fc7836b5ebce0937b37a8b98f" + integrity sha512-kKlNACbvHrkpIw6oPeYDSmdCTu2hdMHoyXLTcUKala++lx5Y+wjJ/e474Jqv5abnVmwxw08DiTuHmw69lJGksA== + dependencies: + reduce-flatten "^2.0.0" + typical "^5.2.0" + wrap-ansi@^6.2.0: version "6.2.0" resolved "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-6.2.0.tgz#e9393ba07102e6c91a3b221478f0257cd2856e53" From 45d3ae153bb355b20e4d75a1525d287845b4323b Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Tue, 17 May 2022 17:29:44 -0500 Subject: [PATCH 15/68] Final batch of review changes. --- .../src/column/strings/multibyte_split.cpp | 9 +-- modules/cudf/src/series.ts | 10 +-- modules/cudf/test/cudf-series-test.ts | 70 ------------------- 3 files changed, 10 insertions(+), 79 deletions(-) diff --git a/modules/cudf/src/column/strings/multibyte_split.cpp b/modules/cudf/src/column/strings/multibyte_split.cpp index 0d941d1be..64312ffb4 100644 --- a/modules/cudf/src/column/strings/multibyte_split.cpp +++ b/modules/cudf/src/column/strings/multibyte_split.cpp @@ -12,12 +12,13 @@ // See the License for the specific language governing permissions and // limitations under the License. -#include -#include #include #include #include +#include +#include + namespace nv { namespace { @@ -65,8 +66,8 @@ Napi::Value Column::read_text(Napi::CallbackInfo const& info) { Napi::Error::New(info.Env(), "read_text expects a filename and an optional delimiter")); } - auto source = args[0]; - auto delimiter = args[1]; + std::string source = args[0]; + std::string delimiter = args[1]; try { return read_text_files(info, source, delimiter); diff --git a/modules/cudf/src/series.ts b/modules/cudf/src/series.ts index e1ac84d9c..28853a79e 100644 --- a/modules/cudf/src/series.ts +++ b/modules/cudf/src/series.ts @@ -939,11 +939,11 @@ export class AbstractSeries { /** * @summary Return sub-selection from a Series using the specified integral indices. * - * @description Gathers the rows of the source columns according to `selection`, such that row - * "i" in the resulting Series's columns will contain row `selection[i]` from the source - * columns. The number of rows in the result series will be equal to the number of elements in - * selection. A negative value i in the selection is interpreted as i+n, where `n` is the number - * of rows in the source series. + * @description Gathers the rows of the source columns according to `selection`, such that row "i" + * in the resulting Series's columns will contain row `selection[i]` from the source columns. The + * number of rows in the result series will be equal to the number of elements in selection. A + * negative value i in the selection is interpreted as i+n, where `n` is the number of rows in + * the source series. * * For dictionary columns, the keys column component is copied and not trimmed if the gather * results in abandoned key elements. diff --git a/modules/cudf/test/cudf-series-test.ts b/modules/cudf/test/cudf-series-test.ts index 4f3a10114..b3a6795c6 100644 --- a/modules/cudf/test/cudf-series-test.ts +++ b/modules/cudf/test/cudf-series-test.ts @@ -869,76 +869,6 @@ ${false} | ${false} | ${false} | ${[4, null, 1, 2, null, 3, 4]} | ${[1, 2, 3 expect([...result]).toEqual(expected); }); -/* TODO: How do I apply a list of dtypes? - */ -function json_aos_to_dataframe( - str: StringSeries, columns: ReadonlyArray, _: ReadonlyArray): DataFrame { - const arr = {} as SeriesMap; - columns.forEach((col, ix) => { - const no_open_list = str.split('[\n').gather([1], false); - const tokenized = no_open_list.split('},'); - console.log(tokenized.toArray()); - const parse_result = tokenized._col.getJSONObject('.' + columns[ix]); - arr[col] = Series.new(parse_result); - console.log(Series.new(parse_result).toArray()); - }); - const result = new DataFrame(arr); - return result; -} -/* TODO: How do I apply a list of dtypes? - */ -function json_aoa_to_dataframe(str: StringSeries, dtypes: ReadonlyArray): DataFrame { - const arr = {} as SeriesMap; - dtypes.forEach((_, ix) => { - const no_open_list = str.split('[\n').gather([1], false); - const tokenized = no_open_list.split('],'); - const get_ix = `[${ix}]`; - const parse_result = tokenized._col.getJSONObject(get_ix); - arr[ix] = Series.new(parse_result); - }); - const result = new DataFrame(arr); - return result; -} - -describe('Graphology dataset parsing', () => { - test('extracts four objects from the base object', () => { - const dataset = StringSeries.read_text('dataset_small.json.txt', ''); - let split = dataset.split('"tags":'); - const ttags = split.gather([1], false); - let rest = split.gather([0], false); - split = rest.split('"clusters":'); - const tclusters = split.gather([1], false); - rest = split.gather([0], false); - split = rest.split('"edges":'); - const tedges = split.gather([1], false); - rest = split.gather([0], false); - split = rest.split('"nodes":'); - const tnodes = split.gather([1], false); - const tags = json_aos_to_dataframe(ttags, ['key', 'image'], [new Utf8String, new Utf8String]); - const clusters = json_aos_to_dataframe( - tclusters, ['key', 'color', 'clusterLabel'], [new Int32, new Utf8String, new Utf8String]); - const nodes = - json_aos_to_dataframe(tnodes, ['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score'], [ - new Utf8String, - new Utf8String, - new Utf8String, - new Utf8String, - new Int32, - new Float64, - new Float64, - new Int32 - ]); - const edges = json_aoa_to_dataframe(tedges, [new Utf8String, new Utf8String]); - expect(nodes.names).toEqual(['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score']); - expect(nodes.numRows).toEqual(5); - expect(edges.numRows).toEqual(11); - expect(clusters.names).toEqual(['key', 'color', 'clusterLabel']); - expect(clusters.numRows).toEqual(24); - expect(tags.names).toEqual(['key', 'image']); - expect(tags.numRows).toEqual(11); - }); -}); - describe('StringSeries.read_text', () => { test('can read a json file', async () => { const rows = [ From 3133d46849a185c61faf606912a07fb7eb3250b6 Mon Sep 17 00:00:00 2001 From: Paul Taylor Date: Wed, 18 May 2022 11:00:27 -0700 Subject: [PATCH 16/68] Apply suggestions from code review --- modules/cudf/src/column.cpp | 2 +- modules/cudf/src/column.ts | 2 +- modules/cudf/src/column/strings/multibyte_split.cpp | 2 +- modules/cudf/src/series/string.ts | 8 ++++---- modules/cudf/test/cudf-series-test.ts | 8 ++++---- 5 files changed, 11 insertions(+), 11 deletions(-) diff --git a/modules/cudf/src/column.cpp b/modules/cudf/src/column.cpp index a9cbcfe92..02454576c 100644 --- a/modules/cudf/src/column.cpp +++ b/modules/cudf/src/column.cpp @@ -149,7 +149,7 @@ Napi::Function Column::Init(Napi::Env const& env, Napi::Object exports) { // column/strings/json.cpp InstanceMethod<&Column::get_json_object>("getJSONObject"), // io/text/multibyte_split.cpp - StaticMethod<&Column::read_text>("read_text"), + StaticMethod<&Column::readText>("read_text"), InstanceMethod<&Column::split>("split"), // column/strings/padding.cpp InstanceMethod<&Column::pad>("pad"), diff --git a/modules/cudf/src/column.ts b/modules/cudf/src/column.ts index ab2649883..6f94453ad 100644 --- a/modules/cudf/src/column.ts +++ b/modules/cudf/src/column.ts @@ -136,7 +136,7 @@ export interface ColumnConstructor { * * @note The maximum size of a string read with this method is 2^30 */ - read_text(filepath: string, delimiter: string): Column; + readText(filepath: string, delimiter: string): Column; } /** diff --git a/modules/cudf/src/column/strings/multibyte_split.cpp b/modules/cudf/src/column/strings/multibyte_split.cpp index 64312ffb4..41bd8ec8a 100644 --- a/modules/cudf/src/column/strings/multibyte_split.cpp +++ b/modules/cudf/src/column/strings/multibyte_split.cpp @@ -1,4 +1,4 @@ -// Copyright (c) 2021, NVIDIA CORPORATION. +// Copyright (c) 2022, NVIDIA CORPORATION. // // Licensed under the Apache License, Version 2.0 (the "License"); // you may not use this file except in compliance with the License. diff --git a/modules/cudf/src/series/string.ts b/modules/cudf/src/series/string.ts index d892b78b4..32aa0d573 100644 --- a/modules/cudf/src/series/string.ts +++ b/modules/cudf/src/series/string.ts @@ -458,7 +458,7 @@ export class StringSeries extends Series { * ```typescript * import {Series} from '@rapidsai/cudf'; * - * Series.read_text('./inputAsciiFile.txt') + * Series.readText('./inputAsciiFile.txt') * ``` */ split(delimiter: string): Series { @@ -479,11 +479,11 @@ export class StringSeries extends Series { * ```typescript * import {Series} from '@rapidsai/cudf'; * - * const infile = Series.read_text('./inputAsciiFile.txt') + * const infile = Series.readText('./inputAsciiFile.txt') * ``` */ - public static read_text(filepath: string, delimiter: string): Series { - return StringSeries.new(Column.read_text(filepath, delimiter ?? '')); + public static readText(filepath: string, delimiter: string): Series { + return Series.new(Column.readText(filepath, delimiter ?? '')); } /** diff --git a/modules/cudf/test/cudf-series-test.ts b/modules/cudf/test/cudf-series-test.ts index b3a6795c6..757753417 100644 --- a/modules/cudf/test/cudf-series-test.ts +++ b/modules/cudf/test/cudf-series-test.ts @@ -869,7 +869,7 @@ ${false} | ${false} | ${false} | ${[4, null, 1, 2, null, 3, 4]} | ${[1, 2, 3 expect([...result]).toEqual(expected); }); -describe('StringSeries.read_text', () => { +describe('Series.readText', () => { test('can read a json file', async () => { const rows = [ {a: 0, b: 1.0, c: '2'}, @@ -879,7 +879,7 @@ describe('StringSeries.read_text', () => { const outputString = JSON.stringify(rows); const path = Path.join(readTextTmpDir, 'simple.txt'); await promises.writeFile(path, outputString); - const text = StringSeries.read_text(path, ''); + const text = Series.readText(path, ''); expect(text.getValue(0)).toEqual(outputString); await new Promise((resolve, reject) => rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); @@ -888,7 +888,7 @@ describe('StringSeries.read_text', () => { const outputString = 'abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789!@#$%^&*()'; const path = Path.join(readTextTmpDir, 'simple.txt'); await promises.writeFile(path, outputString); - const text = StringSeries.read_text(path, ''); + const text = Series.readText(path, ''); expect(text.getValue(0)).toEqual(outputString); await new Promise((resolve, reject) => rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); @@ -897,7 +897,7 @@ describe('StringSeries.read_text', () => { const outputString = ''; const path = Path.join(readTextTmpDir, 'simple.txt'); await promises.writeFile(path, outputString); - const text = StringSeries.read_text(path, ''); + const text = Series.readText(path, ''); expect(text.getValue(0)).toEqual(outputString); await new Promise((resolve, reject) => rimraf(path, (err?: Error|null) => err ? reject(err) : resolve())); From e013dd0e1796ae4baca8f1590b3b7b7215da1dad Mon Sep 17 00:00:00 2001 From: ptaylor Date: Wed, 18 May 2022 11:05:57 -0700 Subject: [PATCH 17/68] move readText from StringSeries to Series --- modules/cudf/src/column.cpp | 2 +- modules/cudf/src/series.ts | 21 +++++++++++++++++++++ modules/cudf/src/series/string.ts | 21 --------------------- 3 files changed, 22 insertions(+), 22 deletions(-) diff --git a/modules/cudf/src/column.cpp b/modules/cudf/src/column.cpp index 02454576c..a3fb08533 100644 --- a/modules/cudf/src/column.cpp +++ b/modules/cudf/src/column.cpp @@ -149,7 +149,7 @@ Napi::Function Column::Init(Napi::Env const& env, Napi::Object exports) { // column/strings/json.cpp InstanceMethod<&Column::get_json_object>("getJSONObject"), // io/text/multibyte_split.cpp - StaticMethod<&Column::readText>("read_text"), + StaticMethod<&Column::read_text>("readText"), InstanceMethod<&Column::split>("split"), // column/strings/padding.cpp InstanceMethod<&Column::pad>("pad"), diff --git a/modules/cudf/src/series.ts b/modules/cudf/src/series.ts index 28853a79e..d66a0cffe 100644 --- a/modules/cudf/src/series.ts +++ b/modules/cudf/src/series.ts @@ -529,6 +529,27 @@ export class AbstractSeries { return columnToSeries(asColumn(input)) as any as Series; } + /** + * Constructs a Series from a text file path. + * + * @note If delimiter is omitted, the default is ''. + * + * @param filepath Path of the input file. + * @param delimiter Optional delimiter. + * + * @returns StringSeries from the file, split by delimiter. + * + * @example + * ```typescript + * import {Series} from '@rapidsai/cudf'; + * + * const infile = Series.readText('./inputAsciiFile.txt') + * ``` + */ + public static readText(filepath: string, delimiter: string): Series { + return Series.new(Column.readText(filepath, delimiter ?? '')); + } + /** * Constructs a Series with a sequence of values. * diff --git a/modules/cudf/src/series/string.ts b/modules/cudf/src/series/string.ts index 32aa0d573..a3fc53166 100644 --- a/modules/cudf/src/series/string.ts +++ b/modules/cudf/src/series/string.ts @@ -465,27 +465,6 @@ export class StringSeries extends Series { return this.__construct(this._col.split(delimiter)); } - /** - * Constructs a Series with an input filename as source. - * - * @note If delimiter is omitted, the default is ''. - * - * @param filepath Path of the input file. - * @param delimiter Optional delimiter. - * - * @returns StringSeries from the file, split by delimiter - * - * @example - * ```typescript - * import {Series} from '@rapidsai/cudf'; - * - * const infile = Series.readText('./inputAsciiFile.txt') - * ``` - */ - public static readText(filepath: string, delimiter: string): Series { - return Series.new(Column.readText(filepath, delimiter ?? '')); - } - /** * Applies a JSONPath(string) where each row in the series is a valid json string. Returns New * StringSeries containing the retrieved json object strings From f681da89abfc2f4df851fe3baf46df161459dd18 Mon Sep 17 00:00:00 2001 From: ptaylor Date: Wed, 18 May 2022 11:06:42 -0700 Subject: [PATCH 18/68] update npmrc option --- dev/dockerfiles/devel/main.Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dev/dockerfiles/devel/main.Dockerfile b/dev/dockerfiles/devel/main.Dockerfile index b24989772..8abf09090 100644 --- a/dev/dockerfiles/devel/main.Dockerfile +++ b/dev/dockerfiles/devel/main.Dockerfile @@ -122,7 +122,7 @@ RUN --mount=type=cache,target=/var/lib/apt \ fund=false\n\ audit=false\n\ save-prefix=\n\ -optional=false\n\ +--omit=optional\n\ save-exact=true\n\ package-lock=false\n\ update-notifier=false\n\ From 777266c47b71c2a135bddd631b233e24cdc4eeb9 Mon Sep 17 00:00:00 2001 From: ptaylor Date: Wed, 18 May 2022 11:09:37 -0700 Subject: [PATCH 19/68] remove unused imports --- modules/cudf/test/cudf-series-test.ts | 3 --- 1 file changed, 3 deletions(-) diff --git a/modules/cudf/test/cudf-series-test.ts b/modules/cudf/test/cudf-series-test.ts index 757753417..b37aacf9e 100644 --- a/modules/cudf/test/cudf-series-test.ts +++ b/modules/cudf/test/cudf-series-test.ts @@ -29,8 +29,6 @@ import { import { Bool8, Column, - DataFrame, - DataType, Float32, Float32Series, Float64, @@ -44,7 +42,6 @@ import { Int8, Int8Series, Series, - SeriesMap, StringSeries, TimestampDay, TimestampMicrosecond, From 1558df5aa751f9292f21d3bd719f891954c84469 Mon Sep 17 00:00:00 2001 From: ptaylor Date: Wed, 18 May 2022 11:30:16 -0700 Subject: [PATCH 20/68] compare split values --- modules/cudf/test/cudf-series-test.ts | 12 ++++-------- 1 file changed, 4 insertions(+), 8 deletions(-) diff --git a/modules/cudf/test/cudf-series-test.ts b/modules/cudf/test/cudf-series-test.ts index b37aacf9e..2fba75239 100644 --- a/modules/cudf/test/cudf-series-test.ts +++ b/modules/cudf/test/cudf-series-test.ts @@ -903,16 +903,12 @@ describe('Series.readText', () => { describe('StringSeries split', () => { test('split a basic string', () => { - const input = StringSeries.new(['abcdefg']); - const example = StringSeries.new(['abcd', 'efg']); - const result = StringSeries.new(input._col.split('d')); - expect(result).toEqual(example); + const input = Series.new(['abcdefg']).split('d'); + expect(input.toArray()).toEqual(['abcd', 'efg']); }); test('split a string twice', () => { - const input = StringSeries.new(['abcdefgdcba']); - const example = StringSeries.new(['abcd', 'efgd', 'cba']); - const result = StringSeries.new(input._col.split('d')); - expect(result).toEqual(example); + const input = Series.new(['abcdefgdcba']).split('d'); + expect(input.toArray()).toEqual(['abcd', 'efgd', 'cba']); }); }); From 921b21af254c2c0ae9ec167ea4abedb560622421 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Thu, 19 May 2022 10:10:00 -0500 Subject: [PATCH 21/68] Get Arrow Table streaming working from server. --- lerna.json | 1 + modules/demo/rapids-api-server/index.js | 33 + modules/demo/rapids-api-server/package.json | 2 +- .../routes/graphology/index.js | 34 +- package.json | 1 + yarn.lock | 1088 ++++++++++++++++- 6 files changed, 1102 insertions(+), 57 deletions(-) create mode 100644 modules/demo/rapids-api-server/index.js diff --git a/lerna.json b/lerna.json index 4f97bce98..c950c0a4b 100644 --- a/lerna.json +++ b/lerna.json @@ -15,6 +15,7 @@ "modules/demo/ssr/*", "modules/demo/tfjs/*", "modules/demo/client-server", + "modules/demo/rapids-api-demo", "modules/demo/viz-app", "modules/demo/sql/*" ] diff --git a/modules/demo/rapids-api-server/index.js b/modules/demo/rapids-api-server/index.js new file mode 100644 index 000000000..2ec231544 --- /dev/null +++ b/modules/demo/rapids-api-server/index.js @@ -0,0 +1,33 @@ +#!/usr/bin/env node + +// Copyright (c) 2022, NVIDIA CORPORATION. +// +// Licensed under the Apache License, Version 2.0 (the "License"); +// you may not use this file except in compliance with the License. +// You may obtain a copy of the License at +// +// http://www.apache.org/licenses/LICENSE-2.0 +// +// Unless required by applicable law or agreed to in writing, software +// distributed under the License is distributed on an "AS IS" BASIS, +// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +// See the License for the specific language governing permissions and +// limitations under the License. + +const Path = require('path'); + +// Change cwd to the example dir so relative file paths are resolved +process.chdir(__dirname); + +const fastify = require.resolve('fastify-cli/cli.js'); + +const {spawnSync} = require('child_process'); + +const env = { + NEXT_TELEMETRY_DISABLED: 1, // disable https://fastifyjs.org/telemetry + ...process.env, +}; + +spawnSync(process.execPath, + [fastify, 'start', '-l', 'info', '-P', '-w', 'app.js'], + {env, cwd: __dirname, stdio: 'inherit'}); diff --git a/modules/demo/rapids-api-server/package.json b/modules/demo/rapids-api-server/package.json index 63ab69aac..e03613fd7 100644 --- a/modules/demo/rapids-api-server/package.json +++ b/modules/demo/rapids-api-server/package.json @@ -2,7 +2,7 @@ "name": "test", "version": "1.0.0", "description": "This project was bootstrapped with Fastify-CLI.", - "main": "app.js", + "main": "index.js", "directories": { "test": "test" }, diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index 56e48e3e6..1a7a03a55 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -14,11 +14,10 @@ const Fs = require('fs'); const {Utf8String, Int32, DataFrame, StringSeries, Series, Float64} = require('@rapidsai/cudf'); -const {RecordBatchStreamWriter, Field, Vector, List} = require('apache-arrow'); -const pipeline = require('util').promisify(require('stream').pipeline); -const Path = require('path'); -const {promisify} = require('util'); -const Stat = promisify(Fs.stat); +const {RecordBatchStreamWriter, Field, Vector, List, Table} = require('apache-arrow'); +const Path = require('path'); +const {promisify} = require('util'); +const Stat = promisify(Fs.stat); const fastify = require('fastify'); const arrowPlugin = require('fastify-arrow'); @@ -111,36 +110,17 @@ module.exports = async function(fastify, opts) { method: 'GET', url: '/get_column/:table/:column', schema: {querystring: {table: {type: 'string'}, 'column': {type: 'string'}}}, - handler: (request, reply) => { + handler: async (request, reply) => { let message = 'Not Implemented'; let result = {'params': JSON.stringify(request.params), success: false, message: message}; - console.log(request.params.table); const table = gpu_cache.getDataframe(request.params.table); - console.log(table); if (table == undefined) { result.message = 'Table not found'; reply.code(404).send(result); } else { - const column = table.get(request.params.column); - console.log(column); - console.log(result); - console.log('reply.stream()'); - console.log('reply.streamed'); - console.log(column.toArrow()); - console.log(column.toArrow().values.length); - // reply.code(200).send(column.toArray()); - // reply.header('Content-Type', 'Application/octet-stream'); - // reply.header('Accepts', 'Application/octet-stream'); - // reply.code(200); - // reply.header('Content-Length', column.toArrow().values.length); - RecordBatchStreamWriter.writeAll(column.toArrow()).pipe(reply.stream({objectMode: false})); + const writer = RecordBatchStreamWriter.writeAll(table.toArrow()); + reply.code(200).send(writer.toNodeStream()); } } }); - fastify.inject({ - method: 'GET', - url: '/get_column/:table/:column', - headers: {'accepts': 'application/octet-stream'} - }, - (err, res) => {}); } diff --git a/package.json b/package.json index 230214168..8724f3a37 100644 --- a/package.json +++ b/package.json @@ -74,6 +74,7 @@ "modules/demo/ssr/*", "modules/demo/tfjs/*", "modules/demo/client-server", + "modules/demo/rapids-api-server", "modules/demo/viz-app", "modules/demo/sql/*" ], diff --git a/yarn.lock b/yarn.lock index af451ec82..e69ab3c96 100644 --- a/yarn.lock +++ b/yarn.lock @@ -11,6 +11,14 @@ "@jridgewell/trace-mapping" "^0.2.2" sourcemap-codec "1.4.8" +"@ampproject/remapping@^2.1.0": + version "2.2.0" + resolved "https://registry.npmjs.org/@ampproject/remapping/-/remapping-2.2.0.tgz#56c133824780de3174aed5ab6834f3026790154d" + integrity sha512-qRmjj8nj9qmLTQXXmaR1cck3UXSRMPrbsLJAasZpF+t3riI71BXed5ebIOYwQntykeZuhjsdweEc9BxH5Jc26w== + dependencies: + "@jridgewell/gen-mapping" "^0.1.0" + "@jridgewell/trace-mapping" "^0.3.9" + "@babel/code-frame@7.12.11": version "7.12.11" resolved "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.12.11.tgz#f4ad435aa263db935b8f10f2c552d23fb716a63f" @@ -30,6 +38,11 @@ resolved "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.17.0.tgz#86850b8597ea6962089770952075dcaabb8dba34" integrity sha512-392byTlpGWXMv4FbyWw3sAZ/FrW/DrwqLGXpy0mbyNe9Taqv1mg9yON5/o0cnr8XYCkFTZbC1eV+c+LAROgrng== +"@babel/compat-data@^7.17.10": + version "7.17.10" + resolved "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.17.10.tgz#711dc726a492dfc8be8220028b1b92482362baab" + integrity sha512-GZt/TCsG70Ms19gfZO1tM4CVnXsPgEPBCpJu+Qz3L0LUDsY5nZqFZglIoPC1kIYOtNBZlrnFT+klg12vFGZXrw== + "@babel/core@7.15.5": version "7.15.5" resolved "https://registry.npmjs.org/@babel/core/-/core-7.15.5.tgz#f8ed9ace730722544609f90c9bb49162dc3bf5b9" @@ -72,6 +85,27 @@ json5 "^2.1.2" semver "^6.3.0" +"@babel/core@^7.5.5": + version "7.17.12" + resolved "https://registry.npmjs.org/@babel/core/-/core-7.17.12.tgz#b4eb2d7ebc3449b062381644c93050db545b70ee" + integrity sha512-44ODe6O1IVz9s2oJE3rZ4trNNKTX9O7KpQpfAP4t8QII/zwrVRHL7i2pxhqtcY7tqMLrrKfMlBKnm1QlrRFs5w== + dependencies: + 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"https://registry.npmjs.org/@babel/helper-create-class-features-plugin/-/helper-create-class-features-plugin-7.17.0.tgz#3ba0eae83313d4077319d11a768c46adad026433" @@ -164,6 +217,14 @@ "@babel/template" "^7.16.7" "@babel/types" "^7.16.7" +"@babel/helper-function-name@^7.17.9": + version "7.17.9" + resolved "https://registry.npmjs.org/@babel/helper-function-name/-/helper-function-name-7.17.9.tgz#136fcd54bc1da82fcb47565cf16fd8e444b1ff12" + integrity sha512-7cRisGlVtiVqZ0MW0/yFB4atgpGLWEHUVYnb448hZK4x+vih0YO5UoS11XIYtZYqHd0dIPMdUSv8q5K4LdMnIg== + dependencies: + "@babel/template" "^7.16.7" + "@babel/types" "^7.17.0" + "@babel/helper-get-function-arity@^7.16.7": version "7.16.7" resolved "https://registry.npmjs.org/@babel/helper-get-function-arity/-/helper-get-function-arity-7.16.7.tgz#ea08ac753117a669f1508ba06ebcc49156387419" @@ -206,6 +267,20 @@ "@babel/traverse" "^7.16.7" "@babel/types" "^7.16.7" +"@babel/helper-module-transforms@^7.17.12": + version "7.17.12" + resolved "https://registry.npmjs.org/@babel/helper-module-transforms/-/helper-module-transforms-7.17.12.tgz#bec00139520cb3feb078ef7a4578562480efb77e" + integrity sha512-t5s2BeSWIghhFRPh9XMn6EIGmvn8Lmw5RVASJzkIx1mSemubQQBNIZiQD7WzaFmaHIrjAec4x8z9Yx8SjJ1/LA== + dependencies: + "@babel/helper-environment-visitor" "^7.16.7" + "@babel/helper-module-imports" "^7.16.7" + "@babel/helper-simple-access" "^7.17.7" + "@babel/helper-split-export-declaration" "^7.16.7" + "@babel/helper-validator-identifier" "^7.16.7" + "@babel/template" "^7.16.7" + "@babel/traverse" "^7.17.12" + "@babel/types" "^7.17.12" + "@babel/helper-optimise-call-expression@^7.16.7": version "7.16.7" resolved "https://registry.npmjs.org/@babel/helper-optimise-call-expression/-/helper-optimise-call-expression-7.16.7.tgz#a34e3560605abbd31a18546bd2aad3e6d9a174f2" @@ -218,6 +293,11 @@ resolved "https://registry.npmjs.org/@babel/helper-plugin-utils/-/helper-plugin-utils-7.16.7.tgz#aa3a8ab4c3cceff8e65eb9e73d87dc4ff320b2f5" integrity 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sha512-txyMCGroZ96i+Pxr3Je3lzEJjqwaRC9buMUgtomcrLe5Nd0+fk1h0LLA+ixUF5OW7AhHuQ7Es1WcQJZmZsz2XA== + dependencies: + "@babel/types" "^7.17.0" + "@babel/helper-skip-transparent-expression-wrappers@^7.16.0": version "7.16.0" resolved "https://registry.npmjs.org/@babel/helper-skip-transparent-expression-wrappers/-/helper-skip-transparent-expression-wrappers-7.16.0.tgz#0ee3388070147c3ae051e487eca3ebb0e2e8bb09" @@ -288,6 +375,15 @@ "@babel/traverse" "^7.17.0" "@babel/types" "^7.17.0" +"@babel/helpers@^7.17.9": + version "7.17.9" + resolved "https://registry.npmjs.org/@babel/helpers/-/helpers-7.17.9.tgz#b2af120821bfbe44f9907b1826e168e819375a1a" + integrity sha512-cPCt915ShDWUEzEp3+UNRktO2n6v49l5RSnG9M5pS24hA+2FAc5si+Pn1i4VVbQQ+jh+bIZhPFQOJOzbrOYY1Q== + dependencies: + "@babel/template" "^7.16.7" + "@babel/traverse" "^7.17.9" + "@babel/types" "^7.17.0" + "@babel/highlight@^7.10.4", "@babel/highlight@^7.16.7": version "7.16.10" resolved "https://registry.npmjs.org/@babel/highlight/-/highlight-7.16.10.tgz#744f2eb81579d6eea753c227b0f570ad785aba88" @@ -302,6 +398,11 @@ resolved "https://registry.npmjs.org/@babel/parser/-/parser-7.17.0.tgz#f0ac33eddbe214e4105363bb17c3341c5ffcc43c" integrity sha512-VKXSCQx5D8S04ej+Dqsr1CzYvvWgf20jIw2D+YhQCrIlr2UZGaDds23Y0xg75/skOxpLCRpUZvk/1EAVkGoDOw== +"@babel/parser@^7.17.12": + version "7.17.12" + resolved "https://registry.npmjs.org/@babel/parser/-/parser-7.17.12.tgz#36c2ed06944e3691ba82735fc4cf62d12d491a23" + integrity sha512-FLzHmN9V3AJIrWfOpvRlZCeVg/WLdicSnTMsLur6uDj9TT8ymUlG9XxURdW/XvuygK+2CW0poOJABdA4m/YKxA== + "@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining@^7.15.4": version "7.16.7" resolved "https://registry.npmjs.org/@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining/-/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.16.7.tgz#cc001234dfc139ac45f6bcf801866198c8c72ff9" @@ -396,6 +497,17 @@ "@babel/plugin-syntax-object-rest-spread" "^7.8.3" 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integrity sha512-KMvVuFzpKBuiIXW3E4u3mySRO2/mCHSyZDJQM5NQ9Q9KHWHWh0NHgfbRMLLrceUK5qAL4ytALJbpRMjixFZh8A== + ws@^7.4.5: version "7.5.6" resolved "https://registry.npmjs.org/ws/-/ws-7.5.6.tgz#e59fc509fb15ddfb65487ee9765c5a51dec5fe7b" @@ -14544,12 +15567,12 @@ yallist@^4.0.0: resolved "https://registry.npmjs.org/yallist/-/yallist-4.0.0.tgz#9bb92790d9c0effec63be73519e11a35019a3a72" integrity sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A== -yaml@^1.10.0, yaml@^1.7.2: +yaml@^1.10.0, yaml@^1.5.0, yaml@^1.7.2: version "1.10.2" resolved "https://registry.npmjs.org/yaml/-/yaml-1.10.2.tgz#2301c5ffbf12b467de8da2333a459e29e7920e4b" integrity sha512-r3vXyErRCYJ7wg28yvBY5VSoAF8ZvlcW9/BwUzEtUsjvX/DKs24dIkuwjtuprwJJHsbyUbLApepYTR1BN4uHrg== -yargs-parser@20.x, yargs-parser@^20.2.2, yargs-parser@^20.2.3: +yargs-parser@20.x, yargs-parser@^20.0.0, yargs-parser@^20.2.2, yargs-parser@^20.2.3: version "20.2.9" resolved 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"https://registry.npmjs.org/yoga-layout-prebuilt/-/yoga-layout-prebuilt-1.10.0.tgz#2936fbaf4b3628ee0b3e3b1df44936d6c146faa6" + integrity sha512-YnOmtSbv4MTf7RGJMK0FvZ+KD8OEe/J5BNnR0GHhD8J/XcG/Qvxgszm0Un6FTHWW4uHlTgP0IztiXQnGyIR45g== + dependencies: + "@types/yoga-layout" "1.9.2" + zeromq@6.0.0-beta.6: version "6.0.0-beta.6" resolved "https://registry.npmjs.org/zeromq/-/zeromq-6.0.0-beta.6.tgz#2b8934cafce735ea9007fd3074ec8aca9bf11204" From ca6db6402a874e91a3ea058d9a70beeead2aa84a Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Thu, 19 May 2022 10:31:59 -0500 Subject: [PATCH 22/68] Add sigma-server to lerna. --- lerna.json | 3 ++- package.json | 1 + 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/lerna.json b/lerna.json index c950c0a4b..1964df36b 100644 --- a/lerna.json +++ b/lerna.json @@ -15,7 +15,8 @@ "modules/demo/ssr/*", "modules/demo/tfjs/*", "modules/demo/client-server", - "modules/demo/rapids-api-demo", + "modules/demo/rapids-api-server", + "modules/demo/sigma-server", "modules/demo/viz-app", "modules/demo/sql/*" ] diff --git a/package.json b/package.json index 8724f3a37..dbc6846c1 100644 --- a/package.json +++ b/package.json @@ -75,6 +75,7 @@ "modules/demo/tfjs/*", "modules/demo/client-server", "modules/demo/rapids-api-server", + "modules/demo/sigma-server", "modules/demo/viz-app", "modules/demo/sql/*" ], From f763d313446cd4791d1cf91309d8f41d0d1cf54e Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Mon, 23 May 2022 17:32:31 -0500 Subject: [PATCH 23/68] rapids-api-server working with sigma.js example demo. --- lerna.json | 3 +- modules/demo/.vscode/launch.json | 2 +- modules/demo/rapids-api-server/package.json | 3 +- .../routes/graphology/index.js | 9 +- modules/demo/rapids-api-server/tsconfig.json | 3 +- .../demo/rapids-api-server/util/gpu_cache.js | 84 +- modules/demo/sigma-server/README.md | 34 - modules/demo/sigma-server/package-lock.json | 27377 ---------------- modules/demo/sigma-server/package.json | 52 - .../sigma-server/public/dataset_full.json | 26304 --------------- .../sigma-server/public/dataset_small.json | 105 - .../sigma-server/public/dataset_small.json.gz | Bin 1138 -> 0 bytes .../public/dataset_small.json.txt | 105 - modules/demo/sigma-server/public/favicon.ico | Bin 15086 -> 0 bytes .../sigma-server/public/images/charttype.svg | 59 - .../sigma-server/public/images/company.svg | 64 - .../sigma-server/public/images/concept.svg | 59 - .../demo/sigma-server/public/images/field.svg | 59 - .../demo/sigma-server/public/images/list.svg | 59 - .../sigma-server/public/images/method.svg | 59 - .../public/images/organization.svg | 59 - .../sigma-server/public/images/person.svg | 59 - .../sigma-server/public/images/technology.svg | 59 - .../demo/sigma-server/public/images/tool.svg | 68 - .../sigma-server/public/images/unknown.svg | 58 - modules/demo/sigma-server/public/index.html | 34 - modules/demo/sigma-server/src/canvas-utils.ts | 114 - modules/demo/sigma-server/src/index.tsx | 12 - .../demo/sigma-server/src/react-app-env.d.ts | 1 - modules/demo/sigma-server/src/styles.css | 335 - modules/demo/sigma-server/src/types.ts | 32 - modules/demo/sigma-server/src/use-debounce.ts | 27 - .../sigma-server/src/views/ClustersPanel.tsx | 112 - .../src/views/DescriptionPanel.tsx | 70 - .../src/views/GraphDataController.tsx | 62 - .../src/views/GraphEventsController.tsx | 42 - .../src/views/GraphSettingsController.tsx | 60 - .../sigma-server/src/views/GraphTitle.tsx | 47 - modules/demo/sigma-server/src/views/Panel.tsx | 37 - modules/demo/sigma-server/src/views/Root.tsx | 153 - .../sigma-server/src/views/SearchField.tsx | 102 - .../demo/sigma-server/src/views/TagsPanel.tsx | 115 - modules/demo/sigma-server/tsconfig.json | 26 - modules/demo/sigma.js | 1 + package.json | 6 +- yarn.lock | 6918 +++- 46 files changed, 6749 insertions(+), 56300 deletions(-) delete mode 100644 modules/demo/sigma-server/README.md delete mode 100644 modules/demo/sigma-server/package-lock.json delete mode 100644 modules/demo/sigma-server/package.json delete mode 100644 modules/demo/sigma-server/public/dataset_full.json delete mode 100644 modules/demo/sigma-server/public/dataset_small.json delete mode 100644 modules/demo/sigma-server/public/dataset_small.json.gz delete mode 100644 modules/demo/sigma-server/public/dataset_small.json.txt delete mode 100644 modules/demo/sigma-server/public/favicon.ico delete mode 100644 modules/demo/sigma-server/public/images/charttype.svg delete mode 100644 modules/demo/sigma-server/public/images/company.svg delete mode 100644 modules/demo/sigma-server/public/images/concept.svg delete mode 100644 modules/demo/sigma-server/public/images/field.svg delete mode 100644 modules/demo/sigma-server/public/images/list.svg delete mode 100644 modules/demo/sigma-server/public/images/method.svg delete mode 100644 modules/demo/sigma-server/public/images/organization.svg delete mode 100644 modules/demo/sigma-server/public/images/person.svg delete mode 100644 modules/demo/sigma-server/public/images/technology.svg delete mode 100644 modules/demo/sigma-server/public/images/tool.svg delete mode 100644 modules/demo/sigma-server/public/images/unknown.svg delete mode 100644 modules/demo/sigma-server/public/index.html delete mode 100644 modules/demo/sigma-server/src/canvas-utils.ts delete mode 100644 modules/demo/sigma-server/src/index.tsx delete mode 100644 modules/demo/sigma-server/src/react-app-env.d.ts delete mode 100644 modules/demo/sigma-server/src/styles.css delete mode 100644 modules/demo/sigma-server/src/types.ts delete mode 100644 modules/demo/sigma-server/src/use-debounce.ts delete mode 100644 modules/demo/sigma-server/src/views/ClustersPanel.tsx delete mode 100644 modules/demo/sigma-server/src/views/DescriptionPanel.tsx delete mode 100644 modules/demo/sigma-server/src/views/GraphDataController.tsx delete mode 100644 modules/demo/sigma-server/src/views/GraphEventsController.tsx delete mode 100644 modules/demo/sigma-server/src/views/GraphSettingsController.tsx delete mode 100644 modules/demo/sigma-server/src/views/GraphTitle.tsx delete mode 100644 modules/demo/sigma-server/src/views/Panel.tsx delete mode 100644 modules/demo/sigma-server/src/views/Root.tsx delete mode 100644 modules/demo/sigma-server/src/views/SearchField.tsx delete mode 100644 modules/demo/sigma-server/src/views/TagsPanel.tsx delete mode 100644 modules/demo/sigma-server/tsconfig.json create mode 160000 modules/demo/sigma.js diff --git a/lerna.json b/lerna.json index 1964df36b..f8de4aba7 100644 --- a/lerna.json +++ b/lerna.json @@ -15,8 +15,9 @@ "modules/demo/ssr/*", "modules/demo/tfjs/*", "modules/demo/client-server", + "modules/demo/sigma.js", + "modules/demo/sigma.js/examples", "modules/demo/rapids-api-server", - "modules/demo/sigma-server", "modules/demo/viz-app", "modules/demo/sql/*" ] diff --git a/modules/demo/.vscode/launch.json b/modules/demo/.vscode/launch.json index 62745d932..9e5baecc1 100644 --- a/modules/demo/.vscode/launch.json +++ b/modules/demo/.vscode/launch.json @@ -113,7 +113,7 @@ "command": "shellCommand.execute", "args": { "description": "Select a demo to debug", - "command": "echo client-server viz-app luma graph spatial xterm $(find modules/demo/deck modules/demo/tfjs modules/demo/ipc modules/demo/ssr modules/demo/sql -maxdepth 2 -type f -name 'package.json' -print0 | grep -z -v node_modules | tr -d '\\0' | sed -r 's@modules/demo/@@g' | sed -r 's@/package.json@ @g') | sort -Vr | sed -r 's@\\s@\\n@g'", + "command": "echo client-server viz-app what rapids-api-server luma graph spatial xterm $(find modules/demo/deck modules/demo/tfjs modules/demo/ipc modules/demo/ssr modules/demo/sql -maxdepth 2 -type f -name 'package.json' -print0 | grep -z -v node_modules | tr -d '\\0' | sed -r 's@modules/demo/@@g' | sed -r 's@/package.json@ @g') | sort -Vr | sed -r 's@\\s@\\n@g'", } }, ] diff --git a/modules/demo/rapids-api-server/package.json b/modules/demo/rapids-api-server/package.json index e03613fd7..05067e287 100644 --- a/modules/demo/rapids-api-server/package.json +++ b/modules/demo/rapids-api-server/package.json @@ -8,7 +8,7 @@ }, "scripts": { "test": "tap \"test/**/*.test.js\"", - "build": "tsc -p ./tsconfig.json", + "build": "tsc -p ../../../tsconfig.json", "start": "npm run build; fastify start -l info -P -w app.js", "dev": "fastify start -w -l info -P app.js" }, @@ -23,6 +23,7 @@ "fastify-arrow": "0.1.0", "fastify-cli": "^3.0.1", "fastify-plugin": "^3.0.0", + "@fastify/cors": "latest", "typescript": "4.6.4" }, "devDependencies": { diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index 1a7a03a55..3c20e80af 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -18,13 +18,15 @@ const {RecordBatchStreamWriter, Field, Vector, List, Table} = require('a const Path = require('path'); const {promisify} = require('util'); const Stat = promisify(Fs.stat); +const fastifyCors = require('@fastify/cors'); +const fastify = require('fastify'); -const fastify = require('fastify'); const arrowPlugin = require('fastify-arrow'); const gpu_cache = require('../../util/gpu_cache.js'); module.exports = async function(fastify, opts) { fastify.register(arrowPlugin); + fastify.register(fastifyCors, {origin: 'http://localhost:3002'}); fastify.get('/', async function(request, reply) { return { graphology: { @@ -72,7 +74,6 @@ module.exports = async function(fastify, opts) { console.log(result); } else { message = 'File is not remote'; - console.log(message); // does the file exist? const path = Path.join(__dirname, request.query.filename); console.log('Does the file exist?'); @@ -97,9 +98,9 @@ module.exports = async function(fastify, opts) { gpu_cache.setDataframe('tags', graphology['tags']); reply.code(200).send(result); } - } catch { + } catch (e) { message = 'Exception reading file.'; - result.message = message; + result.message = e; reply.code(200).send(result); }; } diff --git a/modules/demo/rapids-api-server/tsconfig.json b/modules/demo/rapids-api-server/tsconfig.json index dba667980..c03eb26dd 100644 --- a/modules/demo/rapids-api-server/tsconfig.json +++ b/modules/demo/rapids-api-server/tsconfig.json @@ -1,6 +1,7 @@ { "include": [ - "modules/*/src/**/*.ts", + "routes/**/*.ts", + "plugins/**/*.ts" ], "exclude": ["node_modules"], "compilerOptions": { diff --git a/modules/demo/rapids-api-server/util/gpu_cache.js b/modules/demo/rapids-api-server/util/gpu_cache.js index 88ce1a75e..064dcc15e 100644 --- a/modules/demo/rapids-api-server/util/gpu_cache.js +++ b/modules/demo/rapids-api-server/util/gpu_cache.js @@ -12,13 +12,13 @@ // See the License for the specific language governing permissions and // limitations under the License. -const {Utf8String, Int32, DataFrame, StringSeries, Series, Float64} = require('@rapidsai/cudf'); +const {Utf8String, Int32, DataFrame, StringSeries, Series, Float64} = require('@rapidsai/cudf'); -let timeout = -1; -let datasets = {}; +let timeout = -1; +let datasets = {}; function clearCachedGPUData() { - datasets.keys().forall(key => { datasets[key] = null; }); + for (const key in datasets) { datasets[key] = null; } }; /* TODO: How do I apply a list of dtypes? @@ -50,42 +50,42 @@ function json_aoa_to_dataframe(str, dtypes) { } module.exports = { -setDataframe(name, dataframe) { - if (timeout) { clearTimeout(timeout); } - timeout = setTimeout(clearCachedGPUData, 10 * 60 * 1000); - datasets[name] = dataframe; - console.log(datasets); -}, -getDataframe(name) { return datasets[name] }, -readGraphology(path) { - console.log('readGraphology'); - const dataset = StringSeries.read_text(path, ''); - let split = dataset.split('"tags":'); - const ttags = split.gather([1], false); - let rest = split.gather([0], false); - split = rest.split('"clusters":'); - const tclusters = split.gather([1], false); - rest = split.gather([0], false); - split = rest.split('"edges":'); - const tedges = split.gather([1], false); - rest = split.gather([0], false); - split = rest.split('"nodes":'); - const tnodes = split.gather([1], false); - const tags = json_aos_to_dataframe(ttags, ['key', 'image'], [new Utf8String, new Utf8String]); - const clusters = json_aos_to_dataframe( - tclusters, ['key', 'color', 'clusterLabel'], [new Int32, new Utf8String, new Utf8String]); - const nodes = - json_aos_to_dataframe(tnodes, ['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score'], [ - new Utf8String, - new Utf8String, - new Utf8String, - new Utf8String, - new Int32, - new Float64, - new Float64, - new Int32 - ]); - const edges = json_aoa_to_dataframe(tedges, [new Utf8String, new Utf8String]); - return {nodes: nodes, edges:edges, tags:tags, clusters:clusters}; -} + setDataframe(name, dataframe) { + if (timeout) { clearTimeout(timeout); } + timeout = setTimeout(clearCachedGPUData, 10 * 60 * 1000); + datasets[name] = dataframe; + console.log(datasets); + }, + getDataframe(name) { return datasets[name] }, + readGraphology(path) { + console.log('readGraphology'); + const dataset = StringSeries.readText(path, ''); + let split = dataset.split('"tags":'); + const ttags = split.gather([1], false); + let rest = split.gather([0], false); + split = rest.split('"clusters":'); + const tclusters = split.gather([1], false); + rest = split.gather([0], false); + split = rest.split('"edges":'); + const tedges = split.gather([1], false); + rest = split.gather([0], false); + split = rest.split('"nodes":'); + const tnodes = split.gather([1], false); + const tags = json_aos_to_dataframe(ttags, ['key', 'image'], [new Utf8String, new Utf8String]); + const clusters = json_aos_to_dataframe( + tclusters, ['key', 'color', 'clusterLabel'], [new Int32, new Utf8String, new Utf8String]); + const nodes = + json_aos_to_dataframe(tnodes, ['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score'], [ + new Utf8String, + new Utf8String, + new Utf8String, + new Utf8String, + new Int32, + new Float64, + new Float64, + new Int32 + ]); + const edges = json_aoa_to_dataframe(tedges, [new Utf8String, new Utf8String]); + return {nodes: nodes, edges: edges, tags: tags, clusters: clusters}; + } } diff --git a/modules/demo/sigma-server/README.md b/modules/demo/sigma-server/README.md deleted file mode 100644 index 251e60b47..000000000 --- a/modules/demo/sigma-server/README.md +++ /dev/null @@ -1,34 +0,0 @@ -# Sigma.js full-featured demo - -This project aims to provide a full-features "real life" application using sigma.js. It was bootstrapped with [Create React App](https://github.com/facebook/create-react-app) and uses [react-sigma-v2](https://github.com/sim51/react-sigma-v2) to interface sigma.js with React. - -## Dataset - -The dataset has been kindly crafted by the [Sciences-Po médialab](https://medialab.sciencespo.fr/) and [OuestWare](https://www.ouestware.com/en/) teams using [Seealsology](https://densitydesign.github.io/strumentalia-seealsology/). It represents a network of Wikipedia pages, connected by ["See also"](https://en.wikipedia.org/wiki/See_also) links. It then was tagged by hand. - -## Available Scripts - -In the project directory, you can run: - -### `npm start` - -Runs the app in the development mode.\ -Open [http://localhost:5000](http://localhost:5000) to view it in the browser. - -The page will reload if you make edits.\ -You will also see any lint errors in the console. - -### `npm test` - -Launches the test runner in the interactive watch mode.\ -See the section about [running tests](https://facebook.github.io/create-react-app/docs/running-tests) for more information. - -### `npm run build` - -Builds the app for production to the `build` folder.\ -It correctly bundles React in production mode and optimizes the build for the best performance. - -The build is minified and the filenames include the hashes.\ -Your app is ready to be deployed! - -See the section about [deployment](https://facebook.github.io/create-react-app/docs/deployment) for more information. diff --git a/modules/demo/sigma-server/package-lock.json b/modules/demo/sigma-server/package-lock.json deleted file mode 100644 index 673efb744..000000000 --- a/modules/demo/sigma-server/package-lock.json +++ /dev/null @@ -1,27377 +0,0 @@ -{ - 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["scientific classification", "bacterial taxonomy"], - ["scientific classification", "cladogram"], - ["scientific classification", "cladistics"], - ["scientific classification", "cluster analysis"], - ["scientific classification", "consortium for the barcode of life"], - ["scientific classification", "consortium of european taxonomic facilities"], - ["scientific classification", "dendrogram"], - ["scientific classification", "genetypes"], - ["scientific classification", "glossary of scientific naming"], - ["scientific classification", "identification (biology)"], - ["scientific classification", "incertae sedis"], - ["scientific classification", "open tree of life"], - ["scientific classification", "parataxonomy"], - ["scientific classification", "phenogram"], - ["scientific classification", "set theory"], - ["scientific classification", "taxonomy (general)"], - ["scientific classification", "virus classification"], - ["subclade", "clade"], - ["subclade", "cladistics"], - ["subclade", "haplotype"], - ["systematics", "taxonomy (biology)"], - ["systematics", "cladistics"], - ["systematics", "methodology"], - ["systematics", "global biodiversity"], - ["systematics", "phenetics"], - ["systematics", "phylogeny"], - ["systematics", "phylogenetic comparative methods"], - ["systematics", "biodiversity"], - ["systematics", "scientific classification"], - ["three-taxon analysis", "cladistics"], - ["tree model", "comparative method"], - ["tree model", "evolutionary linguistics"], - ["tree model", "genetic relationship (linguistics)"], - ["tree model", "indo-european studies"], - ["tree model", "language family"], - ["tree model", "linkage (linguistics)"], - ["tree model", "wave model (linguistics)"], - ["tree model", "father tongue hypothesis"], - ["cognitive geography", "behavioral geography"], - ["cognitive geography", "cognitive psychology"], - ["cognitive geography", "spatial cognition"], - ["cognitive geography", "geovisualization"], - ["cognitive geography", "wayfinding"], - ["fuzzy cognitive map", "causal diagram"], - ["fuzzy cognitive map", "causal loop diagram"], - ["fuzzy cognitive map", "system dynamics"], - ["fuzzy cognitive map", "cognitive map"], - ["motion perception", "biological motion"], - ["motion perception", "cognitive map"], - ["motion perception", "eye movement (sensory)"], - ["motion perception", "illusory motion"], - ["motion perception", "induced movement"], - ["motion perception", "jerkiness"], - ["motion perception", "lilac chaser"], - ["motion perception", "max wertheimer"], - ["motion perception", "motion aftereffect"], - ["motion perception", "motion (physics)"], - ["motion perception", "motion sensing in vision"], - ["motion perception", "optical flow"], - ["motion perception", "peripheral drift illusion"], - ["motion perception", "persistence of vision"], - ["motion perception", "pulfrich effect"], - ["motion perception", "strobe light"], - ["motion perception", "stroboscopic effect"], - ["motion perception", "visual modularity"], - ["motion perception", "visual perception"], - ["motion perception", "wagon-wheel effect"], - ["repertory grid", "graph (abstract data type)"], - ["repertory grid", "idea networking"], - ["repertory grid", "implicit relational assessment procedure"], - ["repertory grid", "knowledge representation and reasoning"], - ["repertory grid", "q methodology"], - ["repertory grid", "tree (data structure)"], - ["alphabet of human thought", "algebraic logic"], - ["alphabet of human thought", "language of thought hypothesis"], - ["alphabet of human thought", "natural semantic metalanguage"], - ["alphabet of human thought", "philosophical language"], - ["alphabet of human thought", "upper ontology"], - ["chunking (psychology)", "language acquisition"], - ["chunking (psychology)", "conceptual graph"], - ["chunking (psychology)", "flow (psychology)"], - ["chunking (psychology)", "forgetting curve"], - ["chunking (psychology)", "generalization (learning)"], - ["chunking (psychology)", "knowledge representation and reasoning"], - ["chunking (psychology)", "memory"], - ["chunking (psychology)", "merge (linguistics)"], - ["chunking (psychology)", "method of loci"], - ["chunking (psychology)", "mnemonic"], - ["resource description framework", "rdfa"], - ["resource description framework", "json-ld"], - ["resource description framework", "notation3"], - ["resource description framework", "entity–attribute–value model"], - ["resource description framework", "graph theory"], - ["resource description framework", "tag (metadata)"], - ["resource description framework", "scicrunch"], - ["resource description framework", "semantic network"], - ["resource description framework", "semantic technology"], - ["resource description framework", "associative model of data"], - ["resource description framework", "business intelligence 2.0"], - ["resource description framework", "data portability"], - ["resource description framework", "folksonomy"], - ["resource description framework", "lsid"], - ["resource description framework", "swoogle"], - ["resource description framework", "universal networking language"], - ["resource description framework", "void"], - ["sparql", "sparql query results xml format"], - ["sparql", "wikidata"], - ["abstract semantic graph", "abstract syntax tree"], - ["abstract semantic graph", "ontology (computer science)"], - ["abstract semantic graph", "semantic web"], - ["abstract semantic graph", "semantic grid"], - ["ontology (information science)", "commonsense knowledge bases"], - ["ontology (information science)", "concept map"], - ["ontology (information science)", "controlled vocabulary"], - ["ontology (information science)", "classification scheme (information science)"], - ["ontology (information science)", "folksonomy"], - ["ontology (information science)", "formal concept analysis"], - ["ontology (information science)", "formal ontology"], - ["ontology (information science)", "knowledge graph"], - ["ontology (information science)", "lattice (order)"], - ["ontology (information science)", "ontology"], - ["ontology (information science)", "ontology alignment"], - ["ontology (information science)", "ontology chart"], - ["ontology (information science)", "open semantic framework"], - ["ontology (information science)", "semantic technology"], - ["ontology (information science)", "soft ontology"], - ["ontology (information science)", "terminology extraction"], - ["ontology (information science)", "weak ontology"], - ["ontology (information science)", "web ontology language"], - ["ontology (information science)", "alphabet of human thought"], - ["ontology (information science)", "characteristica universalis"], - ["ontology (information science)", "interoperability"], - ["ontology (information science)", "metalanguage"], - ["ontology (information science)", "natural semantic metalanguage"], - ["semantic lexicon", "gellish"], - ["semantic lexicon", "lexicon"], - ["semantic lexicon", "semantic network"], - ["semeval", "computational semantics"], - ["semeval", "natural language processing"], - ["semeval", "word sense"], - ["semeval", "semantic analysis (computational)"], - ["semantic analysis (computational)", "computational semantics"], - ["semantic analysis (computational)", "natural language processing"], - ["semantic analysis (computational)", "semantic analytics"], - ["semantic analysis (computational)", "semantic analysis (machine learning)"], - ["semantic analysis (computational)", "semantic web"], - ["semantic analysis (computational)", "semeval"], - ["taxonomy (general)", "categorization"], - ["taxonomy (general)", "classification (general theory)"], - ["taxonomy (general)", "celestial emporium of benevolent recognition"], - ["taxonomy (general)", "conflation"], - ["taxonomy (general)", "folksonomy"], - ["taxonomy (general)", "hypernym"], - ["taxonomy (general)", "knowledge representation"], - ["taxonomy (general)", "lexicon"], - ["taxonomy (general)", "ontology (information science)"], - ["taxonomy (general)", "philosophical language"], - ["taxonomy (general)", "protégé (software)"], - ["taxonomy (general)", "semantic network"], - ["taxonomy (general)", "semantic similarity network"], - ["taxonomy (general)", "structuralism"], - ["taxonomy (general)", "systematics"], - ["taxonomy (general)", "taxon"], - ["taxonomy (general)", "taxonomy for search engines"], - ["taxonomy (general)", "thesaurus (information retrieval)"], - ["unified medical language system", "medical classification"], - ["opencog", "soar (cognitive architecture)"], - ["opencog", "cyc"], - ["opencog", "openai"], - ["open mind common sense", "attempto controlled english"], - ["open mind common sense", "never-ending language learning"], - ["open mind common sense", "mindpixel"], - ["open mind common sense", "thoughttreasure"], - ["open mind common sense", "semantic web"], - ["open mind common sense", "dbpedia"], - ["open mind common sense", "freebase (database)"], - ["open mind common sense", "yago (database)"], - ["snomed ct", "clinical data interchange standards consortium"], - ["snomed ct", "clinical care classification system"], - ["snomed ct", "docle"], - ["snomed ct", "en 13606"], - ["snomed ct", "medcin"], - ["snomed ct", "meddra"], - ["snomed ct", "omaha system"], - ["snomed ct", "foundational model of anatomy"], - ["universal networking language", "semantic network"], - ["universal networking language", "abstract semantic graph"], - ["universal networking language", "semantic translation"], - ["universal networking language", "semantic unification"], - ["wikidata", "babelnet"], - ["wikidata", "dbpedia"], - ["wikidata", "freebase (database)"], - ["wikidata", "semantic mediawiki"], - ["freebase (database)", "babelnet"], - ["freebase (database)", "cyc"], - ["freebase (database)", "dbpedia"], - ["freebase (database)", "entity–relationship model"], - ["freebase (database)", "true knowledge"], - ["freebase (database)", "yago (database)"], - ["freebase (database)", "knowledge vault"], - ["freebase (database)", "wikidata"], - ["sparql query results xml format", "sparql"], - ["rdfa", "microformat"], - ["rdfa", "microdata (html)"], - ["rdfa", "xml"], - ["rdfa", "schema.org"], - ["entity–attribute–value model", "attribute-value system"], - ["entity–attribute–value model", "linked data"], - ["entity–attribute–value model", "resource description framework"], - ["entity–attribute–value model", "semantic web"], - ["entity–attribute–value model", "triplestore"], - ["entity–attribute–value model", "slowly changing dimension"], - ["graph theory", "gallery of named graphs"], - ["graph theory", "glossary of graph theory"], - ["graph theory", "algebraic graph theory"], - ["graph theory", "citation graph"], - ["graph theory", "conceptual graph"], - ["graph theory", "data structure"], - ["graph theory", "dual-phase evolution"], - ["graph theory", "entitative graph"], - ["graph theory", "existential graph"], - ["graph theory", "graph algebra"], - ["graph theory", "graph automorphism"], - ["graph theory", "graph coloring"], - ["graph theory", "graph database"], - ["graph theory", "graph (data structure)"], - ["graph theory", "graph drawing"], - ["graph theory", "graph rewriting"], - ["graph theory", "graph property"], - ["graph theory", "intersection graph"], - ["graph theory", "knight's tour"], - ["graph theory", "logical graph"], - ["graph theory", "loop (graph theory)"], - ["graph theory", "network theory"], - ["graph theory", "null graph"], - ["graph theory", "percolation"], - ["graph theory", "quantum graph"], - ["graph theory", "semantic networks"], - ["graph theory", "spectral graph theory"], - ["graph theory", "strongly regular graph"], - ["graph theory", "symmetric graph"], - ["graph theory", "transitive reduction"], - ["graph theory", "tree (data structure)"], - ["graph theory", "bellman–ford algorithm"], - ["graph theory", "borůvka's algorithm"], - ["graph theory", "breadth-first search"], - ["graph theory", "depth-first search"], - ["graph theory", "dijkstra's algorithm"], - ["graph theory", "edmonds–karp algorithm"], - ["graph theory", "floyd–warshall algorithm"], - ["graph theory", "ford–fulkerson algorithm"], - ["graph theory", "hopcroft–karp algorithm"], - ["graph theory", "hungarian algorithm"], - ["graph theory", "kruskal's algorithm"], - ["graph theory", "prim's algorithm"], - ["graph theory", "tarjan's strongly connected components algorithm"], - ["graph theory", "topological sorting"], - ["graph theory", "geometric graph theory"], - ["graph theory", "extremal graph theory"], - ["graph theory", "random graph"], - ["graph theory", "topological graph theory"], - ["graph theory", "combinatorics"], - ["graph theory", "group theory"], - ["graph theory", "knot theory"], - ["graph theory", "ramsey theory"], - ["graph theory", "hypergraph"], - ["graph theory", "abstract simplicial complex"], - ["graph theory", "noga alon"], - ["graph theory", "john adrian bondy"], - ["graph theory", "gabriel andrew dirac"], - ["graph theory", "paul erdős"], - ["graph theory", "percy john heawood"], - ["graph theory", "anton kotzig"], - ["graph theory", "dénes kőnig"], - ["graph theory", "lászló lovász"], - ["graph theory", "paul seymour (mathematician)"], - ["graph theory", "w. t. tutte"], - ["graph theory", "hassler whitney"], - ["tag (metadata)", "collective intelligence"], - ["tag (metadata)", "concept map"], - ["tag (metadata)", "enterprise bookmarking"], - ["tag (metadata)", "expert system"], - ["tag (metadata)", "human–computer interaction"], - ["tag (metadata)", "knowledge transfer"], - ["tag (metadata)", "management information system"], - ["tag (metadata)", "semantic web"], - ["tag (metadata)", "subject indexing"], - ["scicrunch", "lsid"], - ["scicrunch", "resource description framework"], - ["scicrunch", "tag (metadata)"], - ["semantic technology", "knowledge graph"], - ["semantic technology", "metadata"], - ["semantic technology", "ontology (information science)"], - ["semantic technology", "resource description framework"], - ["semantic technology", "schema.org"], - ["semantic technology", "semantic heterogeneity"], - ["semantic technology", "semantic integration"], - ["semantic technology", "semantic matching"], - ["semantic technology", "semantic web"], - ["semantic technology", "web ontology language"], - ["associative model of data", "topic maps"], - ["associative model of data", "triplestore"], - ["associative model of data", "attribute-value system"], - ["business intelligence 2.0", "enterprise bookmarking"], - ["business intelligence 2.0", "linked data"], - ["business intelligence 2.0", "ontology alignment"], - ["business intelligence 2.0", "relationship extraction"], - ["business intelligence 2.0", "semantic grid"], - ["business intelligence 2.0", "semantic web rule language"], - ["business intelligence 2.0", "spreadmart"], - ["folksonomy", "collective intelligence"], - ["folksonomy", "enterprise bookmarking"], - ["folksonomy", "faceted classification"], - ["folksonomy", "hierarchical clustering"], - ["folksonomy", "semantic similarity"], - ["folksonomy", "thesaurus"], - ["folksonomy", "weak ontology"], - ["lsid", "resource description framework"], - ["lsid", "scicrunch"], - ["swoogle", "ontology (computer science)"], - ["swoogle", "darpa agent markup language"], - ["swoogle", "web ontology language"], - ["swoogle", "semantic web"], - ["language acquisition", "chunking (psychology)"], - ["language acquisition", "evolutionary linguistics"], - ["language acquisition", "evolutionary psychology of language"], - ["language acquisition", "foxp2"], - ["language acquisition", "origin of language"], - ["flow (psychology)", "imagination"], - ["flow (psychology)", "ovsiankina effect"], - ["flow (psychology)", "wu wei"], - ["generalization (learning)", "chunking (psychology)"], - ["knowledge representation and reasoning", "alphabet of human thought"], - ["knowledge representation and reasoning", "belief revision"], - ["knowledge representation and reasoning", "chunking (psychology)"], - ["knowledge representation and reasoning", "commonsense knowledge base"], - ["knowledge representation and reasoning", "conceptual graph"], - ["knowledge representation and reasoning", "datr"], - ["knowledge representation and reasoning", "logico-linguistic modeling"], - ["knowledge representation and reasoning", "personal knowledge base"], - ["knowledge representation and reasoning", "knowledge graph"], - ["knowledge representation and reasoning", "knowledge management"], - ["knowledge representation and reasoning", "semantic technology"], - ["knowledge representation and reasoning", "valuation-based system"], - ["memory", "method of loci"], - ["memory", "mnemonic major system"], - ["merge (linguistics)", "chunking (psychology)"], - ["mnemonic", "method of loci"], - ["mnemonic", "mnemonic major system"], - ["algebraic logic", "boolean algebra"], - ["algebraic logic", "codd's theorem"], - ["language of thought hypothesis", "universal grammar"], - ["language of thought hypothesis", "world view"], - ["natural semantic metalanguage", "metalanguage"], - ["natural semantic metalanguage", "upper ontology"], - ["philosophical language", "natural semantic metalanguage"], - ["upper ontology", "authority control"], - ["upper ontology", "formal ontology"], - ["upper ontology", "library classification"], - ["upper ontology", "ontology (information science)"], - ["upper ontology", "process ontology"], - ["upper ontology", "semantic interoperability"], - ["formal ontology", "mereology"], - ["formal ontology", "ontology (information science)"], - ["formal ontology", "upper ontology"], - ["semantic interoperability", "data integration"], - ["semantic interoperability", "interoperability"], - ["semantic interoperability", "semantic computing"], - ["semantic interoperability", "udef"], - ["metalanguage", "category theory"], - ["metalanguage", "language-oriented programming"], - ["metalanguage", "metaphilosophy"], - ["metalanguage", "natural semantic metalanguage"], - ["metalanguage", "self-reference"], - ["personal knowledge base", "commonplace book"], - ["personal knowledge base", "issue-based information system"], - ["personal knowledge base", "lifelog"], - ["personal knowledge base", "notetaking"], - ["personal knowledge base", "comparison of notetaking software"], - ["personal knowledge base", "outliner"], - ["personal knowledge base", "personal knowledge management"], - ["personal knowledge base", "personal wiki"], - ["knowledge graph", "concept map"], - ["knowledge graph", "semantic technology"], - ["knowledge graph", "yago (database)"], - ["knowledge management", "information governance"], - ["knowledge management", "information management"], - ["knowledge management", "knowledge transfer"], - ["knowledge management", "personal knowledge management"], - ["evolutionary linguistics", "biolinguistics"], - ["evolutionary linguistics", "evolutionary psychology of language"], - ["evolutionary linguistics", "foxp2"], - ["evolutionary linguistics", "origin of language"], - ["evolutionary linguistics", "historical linguistics"], - ["evolutionary linguistics", "phylogenetic tree"], - ["origin of language", "abiogenesis"], - ["origin of language", "biolinguistics"], - ["origin of language", "digital infinity"], - ["origin of language", "evolutionary psychology of language"], - ["origin of language", "historical linguistics"], - ["origin of language", "origin of speech"], - ["origin of language", "proto-language"], - ["semantic translation", "data mapping"], - ["semantic translation", "iso/iec 11179"], - ["semantic translation", "national information exchange model"], - ["semantic translation", "semantic heterogeneity"], - ["semantic translation", "semantic mapper"], - ["semantic translation", "semantic web"], - ["semantic translation", "vocabulary-based transformation"], - ["semantic translation", "web ontology language"], - ["semantic unification", "ontology alignment"], - ["semantic unification", "schema matching"], - ["semantic unification", "semantic mapper"], - ["semantic unification", "semantic integration"], - ["semantic unification", "semantic parsing"], - ["semantic unification", "open mind common sense"], - ["ontology (computer science)", "commonsense knowledge bases"], - ["ontology (computer science)", "concept map"], - ["ontology (computer science)", "controlled vocabulary"], - ["ontology (computer science)", "classification scheme (information science)"], - ["ontology (computer science)", "folksonomy"], - ["ontology (computer science)", "formal concept analysis"], - ["ontology (computer science)", "formal ontology"], - ["ontology (computer science)", "knowledge graph"], - ["ontology (computer science)", "lattice (order)"], - ["ontology (computer science)", "ontology"], - ["ontology (computer science)", "ontology alignment"], - ["ontology (computer science)", "ontology chart"], - ["ontology (computer science)", "open semantic framework"], - ["ontology (computer science)", "semantic technology"], - ["ontology (computer science)", "soft ontology"], - ["ontology (computer science)", "terminology extraction"], - ["ontology (computer science)", "weak ontology"], - ["ontology (computer science)", "web ontology language"], - ["ontology (computer science)", "alphabet of human thought"], - ["ontology (computer science)", "characteristica universalis"], - ["ontology (computer science)", "interoperability"], - ["ontology (computer science)", "metalanguage"], - ["ontology (computer science)", "natural semantic metalanguage"], - ["web ontology language", "resource description framework"], - ["web ontology language", "semantic technology"], - ["web ontology language", "ideas group"], - ["web ontology language", "unified modeling language"], - ["web ontology language", "semantic reasoner"], - ["semantic web", "business semantics management"], - ["semantic web", "computational semantics"], - ["semantic web", "dbpedia"], - ["semantic web", "entity–attribute–value model"], - ["semantic web", "hyperdata"], - ["semantic web", "internet of things"], - ["semantic web", "linked data"], - ["semantic web", "ontology alignment"], - ["semantic web", "ontology learning"], - ["semantic web", "resource description framework"], - ["semantic web", "web ontology language"], - ["semantic web", "semantic computing"], - ["semantic web", "semantic heterogeneity"], - ["semantic web", "semantic integration"], - ["semantic web", "semantic matching"], - ["semantic web", "semantic mediawiki"], - ["semantic web", "semantic technology"], - ["semantic web", "web science"], - ["enterprise bookmarking", "enterprise 2.0"], - ["enterprise bookmarking", "knowledge management"], - ["enterprise bookmarking", "knowledge tagging"], - ["enterprise bookmarking", "web 2.0"], - ["enterprise bookmarking", "semantic web"], - ["enterprise bookmarking", "social networking"], - ["enterprise bookmarking", "social software"], - ["hierarchical clustering", "binary space partitioning"], - ["hierarchical clustering", "bounding volume hierarchy"], - ["hierarchical clustering", "brown clustering"], - ["hierarchical clustering", "cladistics"], - ["hierarchical clustering", "cluster analysis"], - ["hierarchical clustering", "computational phylogenetics"], - ["hierarchical clustering", "cure data clustering algorithm"], - ["hierarchical clustering", "dendrogram"], - ["hierarchical clustering", "determining the number of clusters in a data set"], - ["hierarchical clustering", "hierarchical clustering of networks"], - ["hierarchical clustering", "locality-sensitive hashing"], - ["hierarchical clustering", "nearest neighbor search"], - ["hierarchical clustering", "numerical taxonomy"], - ["hierarchical clustering", "optics algorithm"], - ["hierarchical clustering", "statistical distance"], - ["hierarchical clustering", "persistent homology"], - ["linked data", "authority control"], - ["linked data", "hyperdata"], - ["linked data", "schema.org"], - ["linked data", "void"], - ["linked data", "web ontology language"], - ["ontology alignment", "ontology (computer science)"], - ["ontology alignment", "semantic integration"], - ["ontology alignment", "semantic matching"], - ["ontology alignment", "minimal mappings"], - ["ontology alignment", "semantic unification"], - ["ontology alignment", "semantic heterogeneity"], - ["semantic grid", "business intelligence 2.0"], - ["semantic grid", "lsid"], - ["semantic grid", "semantic web rule language"], - ["semantic integration", "data integration"], - ["semantic integration", "dataspaces"], - ["semantic integration", "enterprise integration"], - ["semantic integration", "ontology-based data integration"], - ["semantic integration", "ontology alignment"], - ["semantic integration", "ontology engineering"], - ["semantic integration", "semantic heterogeneity"], - ["semantic integration", "semantic technology"], - ["semantic integration", "semantic translation"], - ["semantic integration", "semantic unification"], - ["management information system", "bachelor of computer information systems"], - ["management information system", "business intelligence"], - ["management information system", "business performance management"], - ["management information system", "business rule"], - ["management information system", "corporate governance of information technology"], - ["management information system", "data mining"], - ["management information system", "predictive analytics"], - ["management information system", "purchase order request"], - ["management information system", "enterprise architecture"], - ["management information system", "enterprise information system"], - ["management information system", "enterprise planning system"], - ["management information system", "management by objectives"], - ["management information system", "online analytical processing"], - ["management information system", "online office suite"], - ["management information system", "real-time computing"], - ["management information system", "real-time marketing"], - ["glossary of graph theory", "gallery of named graphs"], - ["glossary of graph theory", "graph algorithms"], - ["glossary of graph theory", "glossary of areas of mathematics"], - ["algebraic graph theory", "spectral graph theory"], - ["algebraic graph theory", "algebraic connectivity"], - ["algebraic graph theory", "graph property"], - ["citation graph", "web graph"], - ["citation graph", "directed acyclic graph"], - ["data structure", "abstract data type"], - ["data structure", "data model"], - ["data structure", "queap"], - ["data structure", "tree (data structure)"], - ["entitative graph", "charles sanders peirce bibliography"], - ["entitative graph", "logical graph"], - ["existential graph", "ampheck"], - ["existential graph", "conceptual graph"], - ["existential graph", "entitative graph"], - ["existential graph", "logical graph"], - ["graph automorphism", "algebraic graph theory"], - ["graph database", "hierarchical database model"], - ["graph database", "datalog"], - ["graph database", "object database"], - ["graph (data structure)", "graph traversal"], - ["graph (data structure)", "graph database"], - ["graph (data structure)", "graph rewriting"], - ["graph (data structure)", "graph drawing software"], - ["graph rewriting", "category theory"], - ["graph rewriting", "graph theory"], - ["graph rewriting", "shape grammar"], - ["graph rewriting", "formal grammar"], - ["logical graph", "charles sanders peirce bibliography"], - ["logical graph", "conceptual graph"], - ["logical graph", "propositional calculus"], - ["logical graph", "truth table"], - ["logical graph", "venn diagram"], - ["loop (graph theory)", "graph theory"], - ["loop (graph theory)", "glossary of graph theory"], - ["loop (graph theory)", "strange loop"], - ["network theory", "complex network"], - ["network theory", "quantum complex network"], - ["network theory", "dual-phase evolution"], - ["network theory", "network science"], - ["network theory", "network theory in risk assessment"], - ["network theory", "network topology"], - ["network theory", "network management"], - ["network theory", "small-world networks"], - ["network theory", "social network"], - ["network theory", "scale-free networks"], - ["network theory", "network dynamics"], - ["network theory", "sequential dynamical system"], - ["network theory", "pathfinder network"], - ["network theory", "biological network"], - ["network theory", "network medicine"], - ["null graph", "glossary of graph theory"], - ["percolation", "network theory"], - ["percolation", "percolation theory"], - ["percolation", "self-organization"], - ["semantic networks", "abstract semantic graph"], - ["semantic networks", "chunking (psychology)"], - ["semantic networks", "cmaptools"], - ["semantic networks", "concept map"], - ["semantic networks", "network diagram"], - ["semantic networks", "ontology (information science)"], - ["semantic networks", "repertory grid"], - ["semantic networks", "semantic lexicon"], - ["semantic networks", "semantic similarity network"], - ["semantic networks", "semantic neural network"], - ["semantic networks", "semeval"], - ["semantic networks", "semantic analysis (computational)"], - ["semantic networks", "sparse distributed memory"], - ["semantic networks", "taxonomy (general)"], - ["semantic networks", "unified medical language system"], - ["semantic networks", "resource description framework"], - ["semantic networks", "cognition network technology"], - ["semantic networks", "lexipedia"], - ["semantic networks", "opencog"], - ["semantic networks", "open mind common sense"], - ["semantic networks", "schema.org"], - ["semantic networks", "snomed ct"], - ["semantic networks", "universal networking language"], - ["semantic networks", "wikidata"], - ["semantic networks", "freebase (database)"], - ["spectral graph theory", "strongly regular graph"], - ["spectral graph theory", "algebraic connectivity"], - ["spectral graph theory", "algebraic graph theory"], - ["spectral graph theory", "spectral clustering"], - ["symmetric graph", "algebraic graph theory"], - ["symmetric graph", "gallery of named graphs"], - ["tree (data structure)", "tree structure"], - ["tree (data structure)", "tree (graph theory)"], - ["tree (data structure)", "tree (set theory)"], - ["tree (data structure)", "cardinal tree"], - ["tree (data structure)", "ordinal tree"], - ["tree (data structure)", "hierarchy (mathematics)"], - ["tree (data structure)", "dialog tree"], - ["tree (data structure)", "single inheritance"], - ["tree (data structure)", "generative grammar"], - ["tree (data structure)", "genetic programming"], - ["tree (data structure)", "hierarchical clustering"], - ["tree (data structure)", "binary space partition tree"], - ["tree (data structure)", "recursion"], - ["tree (data structure)", "fenwick tree"], - ["tree (data structure)", "trie"], - ["tree (data structure)", "enfilade (xanadu)"], - ["tree (data structure)", "hierarchical temporal memory"], - ["breadth-first search", "depth-first search"], - ["breadth-first search", "iterative deepening depth-first search"], - ["depth-first search", "breadth-first search"], - ["depth-first search", "iterative deepening depth-first search"], - ["dijkstra's algorithm", "bellman–ford algorithm"], - ["dijkstra's algorithm", "floyd–warshall algorithm"], - ["hopcroft–karp algorithm", "assignment problem"], - ["hopcroft–karp algorithm", "hungarian algorithm"], - ["hopcroft–karp algorithm", "edmonds–karp algorithm"], - ["kruskal's algorithm", "prim's algorithm"], - ["kruskal's algorithm", "dijkstra's algorithm"], - ["kruskal's algorithm", "borůvka's algorithm"], - ["prim's algorithm", "dijkstra's algorithm"], - ["prim's algorithm", "shortest path problem"], - ["prim's algorithm", "greedoid"], - ["topological sorting", "tarjan's strongly connected components algorithm"], - ["geometric graph theory", "topological graph theory"], - ["geometric graph theory", "spatial network"], - ["extremal graph theory", "ramsey theory"], - ["random graph", "complex networks"], - ["random graph", "dual-phase evolution"], - ["random graph", "erdős–rényi model"], - ["random graph", "graph theory"], - ["random graph", "interdependent networks"], - ["random graph", "network science"], - ["random graph", "percolation"], - ["random graph", "percolation theory"], - ["random graph", "random graph theory of gelation"], - ["topological graph theory", "topological combinatorics"], - ["combinatorics", "phylogenetics"], - ["ramsey theory", "extremal graph theory"], - ["hypergraph", "combinatorial design"], - ["hypergraph", "factor graph"], - ["hypergraph", "greedoid"], - ["hypergraph", "incidence structure"], - ["lászló lovász", "topological combinatorics"], - ["lászló lovász", "greedoid"], - ["w. t. tutte", "systolic geometry"], - ["babelnet", "knowledge acquisition"], - ["babelnet", "semantic network"], - ["babelnet", "semantic relatedness"], - ["babelnet", "wikidata"], - ["babelnet", "word sense induction"], - ["dbpedia", "babelnet"], - ["dbpedia", "semantic mediawiki"], - ["dbpedia", "wikidata"], - ["semantic mediawiki", "dbpedia"], - ["semantic mediawiki", "freebase (database)"], - ["semantic mediawiki", "wikidata"], - ["cyc", "babelnet"], - ["cyc", "categorical logic"], - ["cyc", "darpa agent markup language"], - ["cyc", "dbpedia"], - ["cyc", "freebase (database)"], - ["cyc", "mindpixel"], - ["cyc", "never-ending language learning"], - ["cyc", "open mind common sense"], - ["cyc", "semantic web"], - ["cyc", "true knowledge"], - ["cyc", "wolfram alpha"], - ["cyc", "yago (database)"], - ["entity–relationship model", "associative entity"], - ["entity–relationship model", "concept map"], - ["entity–relationship model", "database design"], - ["entity–relationship model", "data structure diagram"], - ["entity–relationship model", "enhanced entity–relationship model"], - ["entity–relationship model", "enterprise architecture framework"], - ["entity–relationship model", "entity data model"], - ["entity–relationship model", "fundamental modeling concepts"], - ["entity–relationship model", "comparison of data modeling tools"], - ["entity–relationship model", "ontology (information science)"], - ["entity–relationship model", "object-role modeling"], - ["entity–relationship model", "three schema approach"], - ["entity–relationship model", "structured entity relationship model"], - ["entity–relationship model", "schema-agnostic databases"], - ["true knowledge", "cyc"], - ["true knowledge", "wolfram alpha"], - ["true knowledge", "yago (database)"], - ["yago (database)", "commonsense knowledge bases"], - ["yago (database)", "cyc"], - ["yago (database)", "wikidata"], - ["yago (database)", "dbpedia"], - ["knowledge vault", "dbpedia"], - ["knowledge vault", "linked data"], - ["knowledge vault", "knowledge graph"], - ["knowledge vault", "semantic integration"], - ["knowledge vault", "semantic network"], - ["knowledge vault", "wikidata"], - ["clinical data interchange standards consortium", "clinical trial"], - ["clinical data interchange standards consortium", "data model"], - ["clinical data interchange standards consortium", "data warehouse"], - ["clinical data interchange standards consortium", "health informatics service architecture"], - ["clinical data interchange standards consortium", "health level 7"], - ["clinical data interchange standards consortium", "loinc"], - ["clinical data interchange standards consortium", "systematized nomenclature of medicine"], - ["clinical data interchange standards consortium", "snomed ct"], - ["docle", "loinc"], - ["docle", "medical classification"], - ["docle", "snomed ct"], - ["en 13606", "clinical data interchange standards consortium"], - ["en 13606", "continuity of care record"], - ["en 13606", "health informatics service architecture"], - ["en 13606", "health level 7"], - ["en 13606", "openehr"], - ["en 13606", "snomed ct"], - ["en 13606", "loinc"], - ["medcin", "clinical care classification system"], - ["medcin", "loinc"], - ["medcin", "snomed"], - ["medcin", "hl7"], - ["medcin", "health informatics"], - ["meddra", "systematized nomenclature of medicine"], - ["meddra", "snomed ct"], - ["meddra", "international classification of diseases"], - ["meddra", "clinical trials"], - ["omaha system", "clinical care classification system"], - ["omaha system", "health informatics"], - ["omaha system", "nanda"], - ["attempto controlled english", "gellish"], - ["attempto controlled english", "natural language processing"], - ["attempto controlled english", "natural language programming"], - ["attempto controlled english", "structured english"], - ["never-ending language learning", "cognitive architecture"], - ["never-ending language learning", "computational models of language acquisition"], - ["never-ending language learning", "cyc"], - ["mindpixel", "never-ending language learning"], - ["mindpixel", "cyc"], - ["thoughttreasure", "cyc"], - ["thoughttreasure", "open mind common sense"], - ["thoughttreasure", "wordnet"], - ["soar (cognitive architecture)", "cognitive architecture"], - ["openai", "opencog"], - ["medical classification", "health information management"], - ["medical classification", "health informatics"], - ["medical classification", "hrhis"], - ["medical classification", "nanda"], - ["medical classification", "nosology"], - ["categorization", "classification (general theory)"], - ["categorization", "library classification"], - ["categorization", "pattern recognition"], - ["categorization", "statistical classification"], - ["classification (general theory)", "taxonomy (biology)"], - ["classification (general theory)", "categorization"], - ["classification (general theory)", "folk taxonomy"], - ["classification (general theory)", "library classification"], - ["classification (general theory)", "medical classification"], - ["classification (general theory)", "statistical classification"], - ["classification (general theory)", "taxonomy (general)"], - ["hypernym", "taxonomy (general)"], - ["hypernym", "wordnet"], - ["hypernym", "semantic lexicon"], - ["knowledge representation", "alphabet of human thought"], - ["knowledge representation", "belief revision"], - ["knowledge representation", "chunking (psychology)"], - ["knowledge representation", "commonsense knowledge base"], - ["knowledge representation", "conceptual graph"], - ["knowledge representation", "datr"], - ["knowledge representation", "logico-linguistic modeling"], - ["knowledge representation", "personal knowledge base"], - ["knowledge representation", "knowledge graph"], - ["knowledge representation", "knowledge management"], - ["knowledge representation", "semantic technology"], - ["knowledge representation", "valuation-based system"], - ["lexicon", "glossary"], - ["lexicon", "lexicography"], - ["protégé (software)", "web ontology language"], - ["protégé (software)", "resource description framework"], - ["protégé (software)", "semantic technology"], - ["structuralism", "engaged theory"], - ["structuralism", "holism"], - ["taxon", "alpha taxonomy"], - ["taxon", "cladistics"], - ["taxon", "folk taxonomy"], - ["taxon", "virus classification"], - ["thesaurus (information retrieval)", "controlled vocabulary"], - ["thesaurus (information retrieval)", "thesaurus"], - ["computational semantics", "natural language understanding"], - ["computational semantics", "semantic compression"], - ["computational semantics", "semantic parsing"], - ["computational semantics", "semantic web"], - ["computational semantics", "semeval"], - ["computational semantics", "wordnet"], - ["natural language processing", "computational linguistics"], - ["natural language processing", "computer-assisted reviewing"], - ["natural language processing", "controlled natural language"], - ["natural language processing", "deep learning"], - ["natural language processing", "information extraction"], - ["natural language processing", "natural language programming"], - ["natural language processing", "natural language user interface"], - ["natural language processing", "text simplification"], - ["semantic analytics", "relationship extraction"], - ["semantic analytics", "semantic similarity"], - ["semantic analytics", "text analytics"], - ["semantic analysis (machine learning)", "information extraction"], - ["semantic analysis (machine learning)", "semantic similarity"], - ["semantic analysis (machine learning)", "ontology learning"], - ["word sense", "semantics"], - ["word sense", "word sense induction"], - ["graph (abstract data type)", "graph traversal"], - ["graph (abstract data type)", "graph database"], - ["graph (abstract data type)", "graph rewriting"], - ["graph (abstract data type)", "graph drawing software"], - ["idea networking", "brainstorming"], - ["idea networking", "concept driven strategy"], - ["idea networking", "concept mapping"], - ["idea networking", "group concept mapping"], - ["idea networking", "pathfinder network"], - ["idea networking", "repertory grid"], - ["idea networking", "social network analysis"], - ["q methodology", "card sorting"], - ["q methodology", "group concept mapping"], - ["commonsense knowledge bases", "commonsense reasoning"], - ["commonsense knowledge bases", "linked data"], - ["commonsense knowledge bases", "semantic web"], - ["commonsense knowledge bases", "ontology (information science)"], - ["commonsense knowledge bases", "artificial general intelligence"], - ["controlled vocabulary", "authority control"], - ["controlled vocabulary", "controlled natural language"], - ["controlled vocabulary", "named-entity recognition"], - ["controlled vocabulary", "ontology (computer science)"], - ["controlled vocabulary", "terminology"], - ["controlled vocabulary", "universal data element framework"], - ["controlled vocabulary", "vocabulary-based transformation"], - ["classification scheme (information science)", "iso/iec 11179"], - ["classification scheme (information science)", "metadata"], - ["classification scheme (information science)", "ontology (computer science)"], - ["classification scheme (information science)", "representation term"], - ["formal concept analysis", "association rule learning"], - ["formal concept analysis", "cluster analysis"], - ["formal concept analysis", "commonsense reasoning"], - ["formal concept analysis", "conceptual clustering"], - ["formal concept analysis", "factor analysis"], - ["formal concept analysis", "graphical model"], - ["formal concept analysis", "inductive logic programming"], - ["lattice (order)", "abstract interpretation"], - ["lattice (order)", "first-order logic"], - ["lattice (order)", "domain theory"], - ["lattice (order)", "ontology (computer science)"], - ["lattice (order)", "formal concept analysis"], - ["lattice (order)", "bloom filter"], - ["open semantic framework", "data integration"], - ["open semantic framework", "data management"], - ["open semantic framework", "enterprise information integration"], - ["open semantic framework", "linked data"], - ["open semantic framework", "middleware"], - ["open semantic framework", "ontology-based data integration"], - ["open semantic framework", "resource description framework"], - ["open semantic framework", "semantic computing"], - ["open semantic framework", "semantic integration"], - ["open semantic framework", "semantic technology"], - ["open semantic framework", "web ontology language"], - ["terminology extraction", "computational linguistics"], - ["terminology extraction", "glossary"], - ["terminology extraction", "natural language processing"], - ["terminology extraction", "subject indexing"], - ["terminology extraction", "taxonomy (general)"], - ["terminology extraction", "terminology"], - ["terminology extraction", "text mining"], - ["terminology extraction", "text simplification"], - ["interoperability", "architecture of interoperable information systems"], - ["interoperability", "semantic web"], - ["interoperability", "collaboration"], - ["interoperability", "polytely"], - ["interoperability", "universal data element framework"], - ["abstract syntax tree", "abstract semantic graph"], - ["abstract syntax tree", "control-flow graph"], - ["abstract syntax tree", "directed acyclic graph"], - ["abstract syntax tree", "extended backus–naur form"], - ["abstract syntax tree", "lisp (programming language)"], - ["abstract syntax tree", "parse tree"], - ["abstract syntax tree", "symbol table"], - ["abstract syntax tree", "dynamic syntax tree"], - ["exquisite corpse", "photoshop tennis"], - ["exquisite corpse", "comic jam"], - ["exquisite corpse", "round-robin story"], - ["exquisite corpse", "mindmap"], - ["graph (discrete mathematics)", "conceptual graph"], - ["graph (discrete mathematics)", "graph (abstract data type)"], - ["graph (discrete mathematics)", "graph database"], - ["graph (discrete mathematics)", "graph drawing"], - ["graph (discrete mathematics)", "network theory"], - ["idea", "idealism"], - ["idea", "brainstorming"], - ["idea", "creativity techniques"], - ["idea", "diffusion of innovations"], - ["idea", "ideology"], - ["idea", "notion (philosophy)"], - ["idea", "object of the mind"], - ["idea", "think tank"], - ["idea", "thought experiment"], - ["idea", "history of ideas"], - ["idea", "intellectual history"], - ["idea", "concept"], - ["idea", "philosophical analysis"], - ["nodal organizational structure", "antifragility"], - ["nodal organizational structure", "complexity theory and organizations"], - ["nodal organizational structure", "engineering of systems"], - ["nodal organizational structure", "enterprise modelling"], - ["nodal organizational structure", "flat organization"], - ["nodal organizational structure", "information management"], - ["nodal organizational structure", "hierarchical organization"], - ["nodal organizational structure", "organizational architecture"], - ["nodal organizational structure", "organizational culture"], - ["nodal organizational structure", "organizational structure"], - ["nodal organizational structure", "industrial and organizational psychology"], - ["nodal organizational structure", "social group"], - ["nodal organizational structure", "spontaneous order"], - ["nodal organizational structure", "systems theory"], - ["nodal organizational structure", "clandestine cell system"], - ["nodal organizational structure", "unorganisation"], - ["personal wiki", "commonplace book"], - ["personal wiki", "comparison of wiki software"], - ["personal wiki", "notetaking"], - ["personal wiki", "outliner"], - ["personal wiki", "personal information manager"], - ["personal wiki", "personal knowledge base"], - ["personal wiki", "personal knowledge management"], - ["personal wiki", "zettelkasten"], - ["rhizome (philosophy)", "contextualism"], - ["rhizome (philosophy)", "deleuze and guattari"], - ["rhizome (philosophy)", "heterarchy"], - ["rhizome (philosophy)", "minority (philosophy)"], - ["rhizome (philosophy)", "multiplicity (philosophy)"], - ["rhizome (philosophy)", "mutualism (biology)"], - ["rhizome (philosophy)", "perspectivism"], - ["rhizome (philosophy)", "plane of immanence"], - ["rhizome (philosophy)", "graph (abstract data type)"], - ["rhizome (philosophy)", "digital infinity"], - ["social map", "sociogram"], - ["spider mapping", "mind map"], - ["spider mapping", "concept map"], - ["biological motion", "motion perception"], - ["biological motion", "motion capture"], - ["induced movement", "motion aftereffect"], - ["induced movement", "motion perception"], - ["jerkiness", "persistence of vision"], - ["motion aftereffect", "afterimage"], - ["motion aftereffect", "motion perception"], - ["motion (physics)", "motion capture"], - ["motion sensing in vision", "biological motion"], - ["motion sensing in vision", "cognitive map"], - ["motion sensing in vision", "eye movement (sensory)"], - ["motion sensing in vision", "illusory motion"], - ["motion sensing in vision", "induced movement"], - ["motion sensing in vision", "jerkiness"], - ["motion sensing in vision", "lilac chaser"], - ["motion sensing in vision", "max wertheimer"], - ["motion sensing in vision", "motion aftereffect"], - ["motion sensing in vision", "motion (physics)"], - ["motion sensing in vision", "optical flow"], - ["motion sensing in vision", "peripheral drift illusion"], - ["motion sensing in vision", "persistence of vision"], - ["motion sensing in vision", "pulfrich effect"], - ["motion sensing in vision", "strobe light"], - ["motion sensing in vision", "stroboscopic effect"], - ["motion sensing in vision", "visual modularity"], - ["motion sensing in vision", "visual perception"], - ["motion sensing in vision", "wagon-wheel effect"], - ["persistence of vision", "afterimage"], - ["persistence of vision", "flicker fusion threshold"], - ["persistence of vision", "motion perception"], - ["strobe light", "flicker (light)"], - ["strobe light", "flicker fusion threshold"], - ["strobe light", "jerkiness"], - ["strobe light", "wagon-wheel effect"], - ["stroboscopic effect", "flicker (light)"], - ["stroboscopic effect", "flicker fusion threshold"], - ["visual modularity", "modularity"], - ["visual perception", "computer vision"], - ["visual perception", "motion perception"], - ["visual perception", "multisensory integration"], - ["visual perception", "cognitive science"], - ["wagon-wheel effect", "aliasing"], - ["wagon-wheel effect", "stroboscopic effect"], - ["causal diagram", "bayesian network"], - ["causal diagram", "structural equation modeling"], - ["causal diagram", "path analysis (statistics)"], - ["causal diagram", "causal map"], - ["causal loop diagram", "bayesian network"], - ["causal loop diagram", "directed acyclic graph"], - ["causal loop diagram", "path analysis (statistics)"], - ["causal loop diagram", "positive feedback"], - ["causal loop diagram", "system dynamics"], - ["system dynamics", "causal loop diagram"], - ["system dynamics", "ecosystem model"], - ["system dynamics", "system dynamics society"], - ["system dynamics", "wicked problem"], - ["system dynamics", "population dynamics"], - ["system dynamics", "dynamical systems theory"], - ["system dynamics", "grey box model"], - ["system dynamics", "operations research"], - ["system dynamics", "system identification"], - ["system dynamics", "systems theory"], - ["system dynamics", "systems thinking"], - ["system dynamics", "triz"], - ["operations research", "black box"], - ["operations research", "dynamic programming"], - ["operations research", "c. west churchman"], - ["operations research", "big data"], - ["operations research", "business process management"], - ["operations research", "engineering management"], - ["operations research", "industrial engineering"], - ["operations research", "project production management"], - ["operations research", "reliability engineering"], - ["operations research", "strategic management"], - ["operations research", "system safety"], - ["systems theory", "glossary of systems theory"], - ["systems theory", "autonomous agency theory"], - ["systems theory", "bibliography of sociology"], - ["systems theory", "cellular automata"], - ["systems theory", "chaos theory"], - ["systems theory", "complex systems"], - ["systems theory", "emergence"], - ["systems theory", "engaged theory"], - ["systems theory", "fractal"], - ["systems theory", "grey box model"], - ["systems theory", "irreducible complexity"], - ["systems theory", "meta-systems"], - ["systems theory", "multidimensional systems"], - ["systems theory", "open and closed systems in social science"], - ["systems theory", "pattern language"], - ["systems theory", "recursion (computer science)"], - ["systems theory", "reductionism"], - ["systems theory", "reversal theory"], - ["systems theory", "social rule system theory"], - ["systems theory", "sociotechnical system"], - ["systems theory", "sociology and complexity science"], - ["systems theory", "structure–organization–process"], - ["systems theory", "systemantics"], - ["systems theory", "system identification"], - ["systems theory", "systematics – study of multi-term systems"], - ["systems theory", "systemics"], - ["systems theory", "systemography"], - ["systems theory", "systems science"], - ["systems theory", "theoretical ecology"], - ["systems theory", "tektology"], - ["systems theory", "user-in-the-loop"], - ["systems theory", "viable system theory"], - ["systems theory", "viable systems approach"], - ["systems theory", "world-systems theory"], - ["systems theory", "structuralist economics"], - ["systems theory", "dependency theory"], - ["systems theory", "hierarchy theory"], - ["systems theory", "american society for cybernetics"], - ["systems theory", "cybernetics society"], - ["systems theory", "ieee systems, man, and cybernetics society"], - ["systems theory", "international federation for systems research"], - ["systems theory", "international society for the systems sciences"], - ["systems theory", "new england complex systems institute"], - ["systems theory", "system dynamics society"], - ["systems thinking", "glossary of systems theory"], - ["systems thinking", "autonomous agency theory"], - ["systems thinking", "bibliography of sociology"], - ["systems thinking", "cellular automata"], - ["systems thinking", "chaos theory"], - ["systems thinking", "complex systems"], - ["systems thinking", "emergence"], - ["systems thinking", "engaged theory"], - ["systems thinking", "fractal"], - ["systems thinking", "grey box model"], - ["systems thinking", "irreducible complexity"], - ["systems thinking", "meta-systems"], - ["systems thinking", "multidimensional systems"], - ["systems thinking", "open and closed systems in social science"], - ["systems thinking", "pattern language"], - ["systems thinking", "recursion (computer science)"], - ["systems thinking", "reductionism"], - ["systems thinking", "reversal theory"], - ["systems thinking", "social rule system theory"], - ["systems thinking", "sociotechnical system"], - ["systems thinking", "sociology and complexity science"], - ["systems thinking", "structure–organization–process"], - ["systems thinking", "systemantics"], - ["systems thinking", "system identification"], - ["systems thinking", "systematics – study of multi-term systems"], - ["systems thinking", "systemics"], - ["systems thinking", "systemography"], - ["systems thinking", "systems science"], - ["systems thinking", "theoretical ecology"], - ["systems thinking", "tektology"], - ["systems thinking", "user-in-the-loop"], - ["systems thinking", "viable system theory"], - ["systems thinking", "viable systems approach"], - ["systems thinking", "world-systems theory"], - ["systems thinking", "structuralist economics"], - ["systems thinking", "dependency theory"], - ["systems thinking", "hierarchy theory"], - ["systems thinking", "american society for cybernetics"], - ["systems thinking", "cybernetics society"], - ["systems thinking", "ieee systems, man, and cybernetics society"], - ["systems thinking", "international federation for systems research"], - ["systems thinking", "international society for the systems sciences"], - ["systems thinking", "new england complex systems institute"], - ["systems thinking", "system dynamics society"], - ["triz", "brainstorming"], - ["triz", "lateral thinking"], - ["triz", "systems theory"], - ["structural equation modeling", "causal model"], - ["structural equation modeling", "graphical model"], - ["structural equation modeling", "multivariate statistics"], - ["structural equation modeling", "partial least squares path modeling"], - ["structural equation modeling", "partial least squares regression"], - ["structural equation modeling", "causal map"], - ["tree (graph theory)", "hypertree"], - ["tree (graph theory)", "tree structure"], - ["tree (graph theory)", "tree (data structure)"], - ["tree (graph theory)", "decision tree"], - ["tree (graph theory)", "unrooted binary tree"], - ["tree (set theory)", "kurepa tree"], - ["tree (set theory)", "laver tree"], - ["tree (set theory)", "tree (descriptive set theory)"], - ["ordinal tree", "cardinal tree"], - ["hierarchy (mathematics)", "order theory"], - ["hierarchy (mathematics)", "tree structure"], - ["hierarchy (mathematics)", "tree (data structure)"], - ["hierarchy (mathematics)", "tree (graph theory)"], - ["hierarchy (mathematics)", "tree (descriptive set theory)"], - ["hierarchy (mathematics)", "tree (set theory)"], - ["generative grammar", "digital infinity"], - ["generative grammar", "formal grammar"], - ["generative grammar", "parsing"], - ["genetic programming", "fitness approximation"], - ["genetic programming", "gene expression programming"], - ["binary space partition tree", "k-d tree"], - ["binary space partition tree", "octree"], - ["binary space partition tree", "quadtree"], - ["binary space partition tree", "hierarchical clustering"], - ["binary space partition tree", "3d model"], - ["binary space partition tree", "guillotine cutting"], - ["recursion", "digital infinity"], - ["recursion", "self-reference"], - ["recursion", "strange loop"], - ["trie", "radix tree"], - ["enfilade (xanadu)", "hypertext"], - ["enfilade (xanadu)", "gist"], - ["hierarchical temporal memory", "deep learning"], - ["hierarchical temporal memory", "artificial general intelligence"], - ["hierarchical temporal memory", "artificial consciousness"], - ["hierarchical temporal memory", "cognitive architecture"], - ["hierarchical temporal memory", "memory-prediction framework"], - ["hierarchical temporal memory", "belief revision"], - ["hierarchical temporal memory", "belief propagation"], - ["hierarchical temporal memory", "neural networks"], - ["brainstorming", "group concept mapping"], - ["brainstorming", "lateral thinking"], - ["brainstorming", "mass collaboration"], - ["brainstorming", "speed thinking"], - ["brainstorming", "thinking outside the box"], - ["social network analysis", "attention inequality"], - ["social network analysis", "blockmodeling"], - ["social network analysis", "community structure"], - ["social network analysis", "complex network"], - ["social network analysis", "digital humanities"], - ["social network analysis", "dynamic network analysis"], - ["social network analysis", "metcalfe's law"], - ["social network analysis", "network science"], - ["social network analysis", "social media analytics"], - ["social network analysis", "social media mining"], - ["social network analysis", "social network"], - ["social network analysis", "social network analysis software"], - ["social network analysis", "social networking service"], - ["social network analysis", "social software"], - ["social network analysis", "social web"], - ["social network analysis", "sociomapping"], - ["contextualism", "anekantavada"], - ["contextualism", "degrees of truth"], - ["contextualism", "false dilemma"], - ["contextualism", "fuzzy logic"], - ["contextualism", "logical value"], - ["contextualism", "perspectivism"], - ["contextualism", "principle of bivalence"], - ["contextualism", "propositional logic"], - ["contextualism", "relativism"], - ["contextualism", "rhizome (philosophy)"], - ["deleuze and guattari", "rhizome (philosophy)"], - ["heterarchy", "folksonomy"], - ["multiplicity (philosophy)", "contextualism"], - ["multiplicity (philosophy)", "perspectivism"], - ["multiplicity (philosophy)", "rhizome (philosophy)"], - ["perspectivism", "anekantavada"], - ["perspectivism", "conceptual framework"], - ["perspectivism", "intersubjectivity"], - ["perspectivism", "metaphilosophy"], - ["perspectivism", "rhizome (philosophy)"], - ["plane of immanence", "complex systems"], - ["digital infinity", "origin of language"], - ["digital infinity", "origin of speech"], - ["digital infinity", "recursion"], - ["commonplace book", "florilegium"], - ["commonplace book", "memex"], - ["commonplace book", "notetaking"], - ["commonplace book", "comparison of notetaking software"], - ["commonplace book", "personal knowledge base"], - ["commonplace book", "personal knowledge management"], - ["commonplace book", "personal wiki"], - ["commonplace book", "reference management software"], - ["commonplace book", "thesaurus"], - ["commonplace book", "zettelkasten"], - ["comparison of wiki software", "comparison of notetaking software"], - ["comparison of wiki software", "comparison of text editors"], - ["comparison of wiki software", "comparison of word processors"], - ["comparison of wiki software", "outliner"], - ["notetaking", "florilegium"], - ["notetaking", "forgetting curve"], - ["outliner", "personal information manager"], - ["outliner", "personal knowledge base"], - ["outliner", "concept mapping"], - ["outliner", "mind map"], - ["outliner", "notetaking"], - ["outliner", "comparison of notetaking software"], - ["personal information manager", "calendaring software"], - ["personal information manager", "information management"], - ["personal information manager", "personal information management"], - ["personal information manager", "personal knowledge base"], - ["personal information manager", "personal wiki"], - ["personal knowledge management", "commonplace book"], - ["personal knowledge management", "drakon"], - ["personal knowledge management", "zettelkasten"], - ["zettelkasten", "argument map"], - ["zettelkasten", "commonplace book"], - ["zettelkasten", "hypertext"], - ["zettelkasten", "issue-based information system"], - ["zettelkasten", "memex"], - ["zettelkasten", "notetaking"], - ["zettelkasten", "comparison of notetaking software"], - ["zettelkasten", "outliner"], - ["zettelkasten", "personal knowledge base"], - ["zettelkasten", "personal knowledge management"], - ["zettelkasten", "personal wiki"], - ["zettelkasten", "reference management software"], - ["antifragility", "complexity theory and organizations"], - ["antifragility", "information management"], - ["antifragility", "nodal organizational structure"], - ["antifragility", "systems theory"], - ["antifragility", "systems engineering"], - ["antifragility", "system accident"], - ["complexity theory and organizations", "self-organization"], - ["complexity theory and organizations", "new england complex systems institute"], - ["engineering of systems", "arcadia (engineering)"], - ["engineering of systems", "control engineering"], - ["engineering of systems", "design review (u.s. government)"], - ["engineering of systems", "engineering management"], - ["engineering of systems", "enterprise systems engineering"], - ["engineering of systems", "industrial engineering"], - ["engineering of systems", "interdisciplinarity"], - ["engineering of systems", "management cybernetics"], - ["engineering of systems", "model-based systems engineering"], - ["engineering of systems", "operations management"], - ["engineering of systems", "structured systems analysis and design method"], - ["engineering of systems", "system of systems engineering"], - ["engineering of systems", "system accident"], - ["engineering of systems", "systems architecture"], - ["engineering of systems", "systems development life cycle"], - ["engineering of systems", "systems thinking"], - ["engineering of systems", "theory of constraints"], - ["engineering of systems", "value-stream mapping"], - ["engineering of systems", "system information modelling"], - ["enterprise modelling", "business process modeling"], - ["enterprise modelling", "enterprise architecture"], - ["enterprise modelling", "enterprise architecture framework"], - ["enterprise modelling", "enterprise integration"], - ["enterprise modelling", "enterprise data modeling"], - ["flat organization", "hierarchical organization"], - ["information management", "knowledge management"], - ["information management", "information technology"], - ["information management", "project management"], - ["information management", "business process"], - ["information management", "balanced scorecard"], - ["information management", "strategic management"], - ["information management", "data management"], - ["information management", "content management"], - ["information management", "information resources management journal"], - ["hierarchical organization", "biological organisation"], - ["hierarchical organization", "flat organization"], - ["organizational architecture", "organizational structure"], - ["organizational architecture", "enterprise architecture framework"], - ["organizational architecture", "view model"], - ["organizational culture", "kick the cat"], - ["organizational culture", "kiss up kick down"], - ["organizational culture", "machiavellianism in the workplace"], - ["organizational culture", "narcissism in the workplace"], - ["organizational culture", "organizational behavior"], - ["organizational culture", "organizational studies"], - ["organizational culture", "power (social and political)"], - ["organizational culture", "psychopathy in the workplace"], - ["organizational culture", "three circles model"], - ["organizational culture", "organizational learning"], - ["industrial and organizational psychology", "human resource management"], - ["industrial and organizational psychology", "industrial revolution"], - ["industrial and organizational psychology", "kick the cat"], - ["industrial and organizational psychology", "kiss up kick down"], - ["industrial and organizational psychology", "machiavellianism in the workplace"], - ["industrial and organizational psychology", "narcissism in the workplace"], - ["industrial and organizational psychology", "occupational safety and health"], - ["industrial and organizational psychology", "organizational behavior"], - ["industrial and organizational psychology", "organizational learning"], - ["industrial and organizational psychology", "psychopathy in the workplace"], - ["social group", "corporate group"], - ["social group", "globalization"], - ["social group", "group dynamics"], - ["social group", "intergroup relations"], - ["social group", "public opinion"], - ["social group", "social class"], - ["social group", "social isolation"], - ["social group", "social network"], - ["spontaneous order", "emergence"], - ["spontaneous order", "tragedy of the commons"], - ["spontaneous order", "wu wei"], - ["clandestine cell system", "leaderless resistance"], - ["unorganisation", "collaboration"], - ["unorganisation", "leaderless resistance"], - ["idealism", "rationality"], - ["idealism", "reason"], - ["creativity techniques", "decision tree"], - ["creativity techniques", "imagination"], - ["creativity techniques", "invention"], - ["creativity techniques", "lateral thinking"], - ["creativity techniques", "oblique strategies"], - ["diffusion of innovations", "collaborative innovation network"], - ["diffusion of innovations", "frugal innovation"], - ["diffusion of innovations", "hierarchical organization"], - ["diffusion of innovations", "lateral diffusion"], - ["diffusion of innovations", "memetics"], - ["diffusion of innovations", "technological revolution"], - ["ideology", "social criticism"], - ["ideology", "world view"], - ["notion (philosophy)", "concept"], - ["object of the mind", "abstraction"], - ["think tank", "collective intelligence"], - ["think tank", "internet think tanks"], - ["think tank", "mass collaboration"], - ["think tank", "mass communication"], - ["thought experiment", "black box"], - ["thought experiment", "futures studies"], - ["history of ideas", "cambridge school (intellectual history)"], - ["history of ideas", "global intellectual history"], - ["history of ideas", "great conversation"], - ["intellectual history", "cambridge school (intellectual history)"], - ["intellectual history", "global intellectual history"], - ["intellectual history", "great conversation"], - ["concept", "abstraction"], - ["concept", "categorization"], - ["concept", "class (philosophy)"], - ["concept", "concept map"], - ["concept", "conceptual framework"], - ["concept", "conceptual model"], - ["concept", "formal concept analysis"], - ["concept", "hypostatic abstraction"], - ["concept", "idea"], - ["concept", "notion (philosophy)"], - ["philosophical analysis", "thesis, antithesis, synthesis"], - ["comic jam", "exquisite corpse"], - ["mindmap", "exquisite corpse"], - ["mindmap", "graph (discrete mathematics)"], - ["mindmap", "idea"], - ["mindmap", "mental literacy"], - ["mindmap", "nodal organizational structure"], - ["mindmap", "personal wiki"], - ["mindmap", "rhizome (philosophy)"], - ["mindmap", "social map"], - ["mindmap", "spider mapping"], - ["behavioral geography", "cognitive geography"], - ["cognitive psychology", "cognition"], - ["cognitive psychology", "cognitive robotics"], - ["cognitive psychology", "digital infinity"], - ["cognitive psychology", "artificial intelligence"], - ["cognitive psychology", "formal fallacy"], - ["cognitive psychology", "personal information management"], - ["spatial cognition", "space mapping"], - ["spatial cognition", "cognitive science"], - ["spatial cognition", "cognition"], - ["geovisualization", "cartography"], - ["geovisualization", "computer-aided design"], - ["geovisualization", "computer graphics"], - ["geovisualization", "computer vision"], - ["geovisualization", "exploratory data analysis"], - ["geovisualization", "geoinformatics"], - ["geovisualization", "image processing"], - ["geovisualization", "signal processing"], - ["b-tree", "b+ tree"], - ["b-tree", "r-tree"], - ["b-tree", "red–black tree"], - ["b-tree", "2–3 tree"], - ["b-tree", "2–3–4 tree"], - ["hierarchical model", "tree structure"], - ["hierarchical model", "hierarchical query"], - ["hierarchical model", "hierarchical clustering"], - ["hierarchical query", "datalog"], - ["hierarchical query", "hierarchical model"], - ["hierarchical query", "reachability"], - ["hierarchical query", "transitive closure"], - ["hierarchical query", "tree structure"], - ["comparative method", "comparative linguistics"], - ["comparative method", "historical linguistics"], - ["comparative method", "lexicostatistics"], - ["comparative method", "proto-language"], - ["genetic relationship (linguistics)", "language family"], - ["genetic relationship (linguistics)", "comparative linguistics"], - ["genetic relationship (linguistics)", "language isolate"], - ["indo-european studies", "historical linguistics"], - ["linkage (linguistics)", "language contact"], - ["wave model (linguistics)", "memetics"], - ["father tongue hypothesis", "language family"], - ["constructed language", "knowledge representation"], - ["constructed language", "metalanguage"], - ["constructed language", "universal grammar"], - ["constructed language", "origin of language"], - ["constructed language", "universal language"], - ["endangered language", "language death"], - ["endangered language", "language policy"], - ["endangered language", "language revitalization"], - ["endangered language", "lists of endangered languages"], - ["endangered language", "lists of extinct languages"], - ["endangered language", "minority language"], - ["endangered language", "the linguists"], - ["extinct language", "endangered language"], - ["extinct language", "globalization"], - ["extinct language", "language death"], - ["extinct language", "lists of endangered languages"], - ["language death", "endangered language"], - ["language death", "lists of endangered languages"], - ["language death", "extinct language"], - ["language death", "lists of extinct languages"], - ["language death", "international auxiliary language"], - ["language death", "language contact"], - ["language death", "language policy"], - ["language death", "language revitalization"], - ["language death", "linguistic imperialism"], - ["language death", "minority language"], - ["language death", "the linguists"], - ["global language system", "linguistic imperialism"], - ["global language system", "universal language"], - ["global language system", "minority language"], - ["global language system", "international auxiliary language"], - ["proto-language (historical linguistics)", "comparative method"], - ["proto-language (historical linguistics)", "japhetic theory"], - ["proto-language (historical linguistics)", "historical linguistics"], - ["proto-language (historical linguistics)", "origin of language"], - ["proto-language (historical linguistics)", "proto-human language"], - ["proto-language (historical linguistics)", "universal language"], - ["proto-human language", "origin of language"], - ["proto-human language", "origin of speech"], - ["proto-human language", "proto-language"], - ["proto-human language", "universal grammar"], - ["unclassified language", "language isolate"], - ["datalog", "semantic web rule language"], - ["datalog", "relational database"], - ["transitive closure", "transitive reduction"], - ["binary space partitioning", "k-d tree"], - ["binary space partitioning", "octree"], - ["binary space partitioning", "quadtree"], - ["binary space partitioning", "hierarchical clustering"], - ["binary space partitioning", "3d model"], - ["binary space partitioning", "guillotine cutting"], - ["bounding volume hierarchy", "binary space partitioning"], - ["bounding volume hierarchy", "octree"], - ["bounding volume hierarchy", "k-d tree"], - ["bounding volume hierarchy", "r-tree"], - ["bounding volume hierarchy", "hierarchical clustering"], - ["cluster analysis", "conceptual clustering"], - ["cluster analysis", "community structure"], - ["cluster analysis", "spectral clustering"], - ["cluster analysis", "artificial neural network"], - ["cluster analysis", "nearest neighbor search"], - ["cluster analysis", "dimension reduction"], - ["cluster analysis", "principal component analysis"], - ["cluster analysis", "curse of dimensionality"], - ["cluster analysis", "determining the number of clusters in a data set"], - ["cluster analysis", "parallel coordinates"], - ["cluster analysis", "structured data analysis (statistics)"], - ["computational phylogenetics", "bayesian network"], - ["computational phylogenetics", "bioinformatics"], - ["computational phylogenetics", "cladistics"], - ["computational phylogenetics", "disk-covering method"], - ["computational phylogenetics", "microbial phylogenetics"], - ["computational phylogenetics", "phylogenetic comparative methods"], - ["computational phylogenetics", "phylogenetic tree"], - ["computational phylogenetics", "phylogenetics"], - ["computational phylogenetics", "population genetics"], - ["computational phylogenetics", "statistical classification"], - ["computational phylogenetics", "systematics"], - ["computational phylogenetics", "taxonomy (biology)"], - ["hierarchical clustering of networks", "network topology"], - ["hierarchical clustering of networks", "numerical taxonomy"], - ["hierarchical clustering of networks", "tree structure"], - ["locality-sensitive hashing", "bloom filter"], - ["locality-sensitive hashing", "curse of dimensionality"], - ["locality-sensitive hashing", "multilinear subspace learning"], - ["locality-sensitive hashing", "principal component analysis"], - ["locality-sensitive hashing", "singular value decomposition"], - ["locality-sensitive hashing", "sparse distributed memory"], - ["nearest neighbor search", "cluster analysis"], - ["nearest neighbor search", "curse of dimensionality"], - ["nearest neighbor search", "digital signal processing"], - ["nearest neighbor search", "dimension reduction"], - ["nearest neighbor search", "principal component analysis"], - ["nearest neighbor search", "singular value decomposition"], - ["nearest neighbor search", "sparse distributed memory"], - ["nearest neighbor search", "statistical distance"], - ["nearest neighbor search", "time series"], - ["numerical taxonomy", "computational phylogenetics"], - ["numerical taxonomy", "taxonomy (biology)"], - ["tree (descriptive set theory)", "laver tree"], - ["tree (descriptive set theory)", "set theory"], - ["behavior tree (artificial intelligence, robotics and control)", "decision tree"], - ["behavior tree (artificial intelligence, robotics and control)", "hybrid system"], - ["behavior tree (artificial intelligence, robotics and control)", "subsumption architecture"], - ["boosting (machine learning)", "adaboost"], - ["boosting (machine learning)", "random forest"], - ["boosting (machine learning)", "alternating decision tree"], - ["boosting (machine learning)", "bootstrap aggregating"], - ["boosting (machine learning)", "cascading classifiers"], - ["boosting (machine learning)", "brownboost"], - ["boosting (machine learning)", "coboosting"], - ["boosting (machine learning)", "logistic regression"], - ["boosting (machine learning)", "principle of maximum entropy"], - ["boosting (machine learning)", "neural network"], - ["boosting (machine learning)", "support vector machine"], - ["boosting (machine learning)", "gradient boosting"], - ["boosting (machine learning)", "cross-validation (statistics)"], - ["boosting (machine learning)", "machine learning"], - ["decision cycle", "adaptive management"], - ["decision cycle", "decision tree"], - ["decision cycle", "decisional balance sheet"], - ["decision cycle", "learning cycle"], - ["decision cycle", "systems development lifecycle"], - ["decision cycle", "virtuous circle and vicious circle"], - ["decision cycle", "intelligence cycle"], - ["decision list", "decision stump"], - ["decision table", "decision tree"], - ["decision table", "case based reasoning"], - ["decision table", "cause–effect graph"], - ["decision table", "dominance-based rough set approach"], - ["decision table", "drakon"], - ["decision table", "karnaugh-veitch diagram"], - ["decision table", "many-valued logic"], - ["decision table", "semantic decision table"], - ["decision tree model", "decision tree"], - ["design rationale", "goal structuring notation"], - ["design rationale", "method engineering"], - ["design rationale", "problem structuring methods"], - ["design rationale", "theory of justification"], - ["markov chain", "markov chain approximation method"], - ["markov chain", "markov chain mixing time"], - ["markov chain", "markov decision process"], - ["markov chain", "markov information source"], - ["markov chain", "markov odometer"], - ["markov chain", "markov random field"], - ["markov chain", "quantum markov chain"], - ["markov chain", "semi-markov process"], - ["markov chain", "stochastic cellular automaton"], - ["markov chain", "variable-order markov model"], - ["random forest", "boosting (machine learning)"], - ["random forest", "decision tree learning"], - ["random forest", "ensemble learning"], - ["random forest", "gradient boosting"], - ["random forest", "non-parametric statistics"], - ["random forest", "randomized algorithm"], - ["odds algorithm", "odds"], - ["odds algorithm", "clinical trial"], - ["odds algorithm", "expanded access"], - ["odds algorithm", "secretary problem"], - ["topological combinatorics", "sperner's lemma"], - ["topological combinatorics", "discrete exterior calculus"], - ["topological combinatorics", "topological graph theory"], - ["topological combinatorics", "combinatorial topology"], - ["topological combinatorics", "finite topological space"], - ["truth table", "boolean domain"], - ["truth table", "boolean-valued function"], - ["truth table", "first-order logic"], - ["truth table", "functional completeness"], - ["truth table", "karnaugh maps"], - ["truth table", "logic gate"], - ["truth table", "logical connective"], - ["truth table", "logical graph"], - ["truth table", "method of analytic tableaux"], - ["truth table", "propositional calculus"], - ["truth table", "truth function"], - ["b+ tree", "b-tree"], - ["r-tree", "k-d tree"], - ["r-tree", "bounding volume hierarchy"], - ["r-tree", "gist"], - ["red–black tree", "aa tree"], - ["red–black tree", "avl tree"], - ["red–black tree", "b-tree"], - ["red–black tree", "2–3 tree"], - ["red–black tree", "2–3–4 tree"], - ["red–black tree", "b+ tree"], - ["red–black tree", "splay tree"], - ["2–3 tree", "2–3–4 tree"], - ["2–3 tree", "aa tree"], - ["2–3 tree", "b-tree"], - ["2–3–4 tree", "2–3 tree"], - ["2–3–4 tree", "red–black tree"], - ["2–3–4 tree", "b-tree"], - ["2–3–4 tree", "queap"], - ["exploratory data analysis", "anscombe's quartet"], - ["exploratory data analysis", "data dredging"], - ["exploratory data analysis", "predictive analytics"], - ["exploratory data analysis", "structured data analysis (statistics)"], - ["exploratory data analysis", "descriptive statistics"], - ["taxonomy (biology)", "automated species identification"], - ["taxonomy (biology)", "bacterial taxonomy"], - ["taxonomy (biology)", "cladogram"], - ["taxonomy (biology)", "cladistics"], - ["taxonomy (biology)", "cluster analysis"], - ["taxonomy (biology)", "consortium for the barcode of life"], - ["taxonomy (biology)", "consortium of european taxonomic facilities"], - ["taxonomy (biology)", "dendrogram"], - ["taxonomy (biology)", "genetypes"], - ["taxonomy (biology)", "glossary of scientific naming"], - ["taxonomy (biology)", "identification (biology)"], - ["taxonomy (biology)", "incertae sedis"], - ["taxonomy (biology)", "open tree of life"], - ["taxonomy (biology)", "parataxonomy"], - ["taxonomy (biology)", "phenogram"], - ["taxonomy (biology)", "set theory"], - ["taxonomy (biology)", "taxonomy (general)"], - ["taxonomy (biology)", "virus classification"], - ["methodology", "scientific method"], - ["phenetics", "distance matrices in phylogeny"], - ["phenetics", "folk taxonomy"], - ["phenetics", "taxonomy (biology)"], - ["phenetics", "dendrogram"], - ["phylogeny", "clade"], - ["phylogeny", "cladistics"], - ["phylogeny", "computational phylogenetics"], - ["phylogeny", "evolutionary taxonomy"], - ["phylogeny", "phylogenetic comparative methods"], - ["phylogenetic comparative methods", "allometry"], - ["phylogenetic comparative methods", "biodiversity"], - ["phylogenetic comparative methods", "bioinformatics"], - ["phylogenetic comparative methods", "cladistics"], - ["phylogenetic comparative methods", "comparative method"], - ["phylogenetic comparative methods", "computational phylogenetics"], - ["phylogenetic comparative methods", "disk-covering method"], - ["phylogenetic comparative methods", "generalized linear model"], - ["phylogenetic comparative methods", "joe felsenstein"], - ["phylogenetic comparative methods", "maximum parsimony"], - ["phylogenetic comparative methods", "phylogenetics"], - ["phylogenetic comparative methods", "statistics"], - ["phylogenetic comparative methods", "systematics"], - ["biodiversity", "megadiverse countries"], - ["clade", "binomial nomenclature"], - ["clade", "biological classification"], - ["clade", "cladistics"], - ["clade", "phylogenetic network"], - ["clade", "phylogenetic nomenclature"], - ["clade", "phylogenetics"], - ["bacterial taxonomy", "taxonomy (biology)"], - ["bacterial taxonomy", "microbial ecology"], - ["cladogram", "phylogenetics"], - ["cladogram", "dendrogram"], - ["genetypes", "dna barcoding"], - ["identification (biology)", "automated species identification"], - ["identification (biology)", "dna barcoding"], - ["identification (biology)", "taxonomy (biology)"], - ["incertae sedis", "glossary of scientific naming"], - ["incertae sedis", "unclassified language"], - ["parataxonomy", "folk taxonomy"], - ["parataxonomy", "citizen science"], - ["set theory", "relational model"], - ["virus classification", "glossary of scientific naming"], - ["virus classification", "binomial nomenclature"], - ["virus classification", "biological classification"], - ["virus classification", "taxonomy (biology)"], - ["relational model", "domain relational calculus"], - ["relational model", "query language"], - ["relational model", "relation (mathematics)"], - ["relational model", "relational database"], - ["alpha taxonomy", "automated species identification"], - ["alpha taxonomy", "bacterial taxonomy"], - ["alpha taxonomy", "cladogram"], - ["alpha taxonomy", "cladistics"], - ["alpha taxonomy", "cluster analysis"], - ["alpha taxonomy", "consortium for the barcode of life"], - ["alpha taxonomy", "consortium of european taxonomic facilities"], - ["alpha taxonomy", "dendrogram"], - ["alpha taxonomy", "genetypes"], - ["alpha taxonomy", "glossary of scientific naming"], - ["alpha taxonomy", "identification (biology)"], - ["alpha taxonomy", "incertae sedis"], - ["alpha taxonomy", "open tree of life"], - ["alpha taxonomy", "parataxonomy"], - ["alpha taxonomy", "phenogram"], - ["alpha taxonomy", "set theory"], - ["alpha taxonomy", "taxonomy (general)"], - ["alpha taxonomy", "virus classification"], - ["glossary of botanical terms", "glossary of scientific naming"], - ["species description", "binomial nomenclature"], - ["species description", "glossary of scientific naming"], - ["freeware", "gratis versus libre"], - ["freeware", "comparison of user features of messaging platforms"], - ["phylogenetics", "bioinformatics"], - ["phylogenetics", "biomathematics"], - ["phylogenetics", "coalescent theory"], - ["phylogenetics", "evolutionary taxonomy"], - ["phylogenetics", "joe felsenstein"], - ["phylogenetics", "language family"], - ["phylogenetics", "maximum parsimony"], - ["phylogenetics", "microbial phylogenetics"], - ["phylogenetics", "phylogenetic comparative methods"], - ["phylogenetics", "phylogenetic network"], - ["phylogenetics", "phylogenetic nomenclature"], - ["phylogenetics", "systematics"], - ["statistics", "official statistics"], - ["the ancestor's tale", "phylogenetic tree"], - ["biological applications of bifurcation theory", "dynamical systems theory"], - ["biological applications of bifurcation theory", "theoretical biology"], - ["biological applications of bifurcation theory", "computational biology"], - ["biological applications of bifurcation theory", "systems biology"], - ["biostatistics", "bioinformatics"], - ["biostatistics", "epidemiology"], - ["biostatistics", "mathematical and theoretical biology"], - ["entropy and life", "abiogenesis"], - ["entropy and life", "complex systems"], - ["entropy and life", "dissipative system"], - ["entropy and life", "biodiversity"], - ["entropy and life", "ecology"], - ["entropy and life", "dynamical system"], - ["entropy and life", "self-organization"], - ["ewens's sampling formula", "coalescent theory"], - ["ewens's sampling formula", "biomathematics"], - ["logistic function", "diffusion of innovations"], - ["logistic function", "logistic regression"], - ["logistic function", "population dynamics"], - ["mathematical modelling of infectious disease", "disease surveillance"], - ["mathematical modelling of infectious disease", "ecosystem model"], - ["metabolic network modelling", "computational systems biology"], - ["metabolic network modelling", "computer simulation"], - ["metabolic network modelling", "metabolic network"], - ["metabolic network modelling", "metabolic pathway"], - ["metabolic network modelling", "metagenomics"], - ["molecular modelling", "cheminformatics"], - ["molecular modelling", "comparison of nucleic acid simulation software"], - ["molecular modelling", "molecular design software"], - ["molecular modelling", "molecular graphics"], - ["molecular modelling", "monte carlo method"], - ["molecular modelling", "simulated reality"], - ["molecular modelling", "structural bioinformatics"], - ["morphometrics", "allometry"], - ["morphometrics", "phylogenetic comparative methods"], - ["theoretical ecology", "butterfly effect"], - ["theoretical ecology", "ecosystem model"], - ["theoretical ecology", "mathematical biology"], - ["theoretical ecology", "population dynamics"], - ["theoretical ecology", "theoretical biology"], - ["turing pattern", "mathematical and theoretical biology"], - ["computational biology", "international society for computational biology"], - ["computational biology", "bioinformatics"], - ["computational biology", "biosimulation"], - ["computational biology", "biostatistics"], - ["computational biology", "mathematical biology"], - ["computational biology", "monte carlo method"], - ["computational biology", "structural genomics"], - ["computational biology", "systems biology"], - ["computational biomodeling", "biological data visualization"], - ["computational biomodeling", "biosimulation"], - ["computational biomodeling", "gillespie algorithm"], - ["computational biomodeling", "stochastic simulation"], - ["computational genomics", "bioinformatics"], - ["computational genomics", "computational biology"], - ["computational genomics", "genomics"], - ["computational genomics", "microarray"], - ["computational genomics", "blast"], - ["functional genomics", "systems biology"], - ["functional genomics", "structural genomics"], - ["functional genomics", "bioinformatics"], - ["health informatics", "bioinformatics"], - ["health informatics", "continuity of care record"], - ["health informatics", "health information management"], - ["health informatics", "hrhis"], - ["health informatics", "international classification of diseases"], - ["health informatics", "nosology"], - ["health informatics", "hl7"], - ["health informatics", "omaha system"], - ["health informatics", "openehr"], - ["health informatics", "snomed"], - ["jumping library", "bioinformatics"], - ["metabolomics", "genomics"], - ["metabolomics", "epigenomics"], - ["metabolomics", "proteomics"], - ["proteomics", "functional genomics"], - ["proteomics", "systems biology"], - ["proteomics", "glycomics"], - ["proteomics", "european bioinformatics institute"], - ["gene disease database", "biodiversity informatics"], - ["gene disease database", "bioinformatics companies"], - ["gene disease database", "computational biology"], - ["gene disease database", "computational biomodeling"], - ["gene disease database", "computational genomics"], - ["gene disease database", "european bioinformatics institute"], - ["gene disease database", "functional genomics"], - ["gene disease database", "health informatics"], - ["gene disease database", "international society for computational biology"], - ["gene disease database", "jumping library"], - ["gene disease database", "pathology"], - ["gene disease database", "phylogenetics"], - ["gene disease database", "structural bioinformatics"], - ["genomics", "computational genomics"], - ["genomics", "epigenomics"], - ["genomics", "functional genomics"], - ["genomics", "glycomics"], - ["genomics", "metagenomics"], - ["genomics", "pathogenomics"], - ["genomics", "proteomics"], - ["blast", "sequence alignment"], - ["simulated reality", "artificial life"], - ["simulated reality", "artificial society"], - ["simulated reality", "computational sociology"], - ["simulated reality", "philosophy of information"], - ["simulated reality", "social simulation"], - ["computational systems biology", "biological data visualization"], - ["computational systems biology", "biosimulation"], - ["computational systems biology", "gillespie algorithm"], - ["computational systems biology", "stochastic simulation"], - ["metabolic network", "metabolic network modelling"], - ["metabolic network", "metabolic pathway"], - ["metabolic pathway", "metabolic network"], - ["metabolic pathway", "metabolic network modelling"], - ["metagenomics", "microbial ecology"], - ["metagenomics", "pathogenomics"], - ["logistic regression", "logistic function"], - ["logistic regression", "logistic model tree"], - ["resolution (logic)", "inductive logic programming"], - ["resolution (logic)", "method of analytic tableaux"], - ["argument mining", "argument technology"], - ["argument mining", "argumentation theory"], - ["parse tree", "abstract syntax tree"], - ["parse tree", "computational linguistics"], - ["parse tree", "parsing"], - ["parse tree", "dynamic syntax tree"], - ["logical argument", "abductive reasoning"], - ["logical argument", "argument map"], - ["logical argument", "argumentation theory"], - ["logical argument", "bayes' theorem"], - ["logical argument", "belief bias"], - ["logical argument", "boolean logic"], - ["logical argument", "critical thinking"], - ["logical argument", "dialectic"], - ["logical argument", "evidence"], - ["logical argument", "evidence-based policy"], - ["logical argument", "inquiry"], - ["logical argument", "logical reasoning"], - ["logical argument", "practical arguments"], - ["logical argument", "soundness theorem"], - ["logical argument", "syllogism"], - ["toulmin model of argument", "argumentation theory"], - ["argumentation theory", "argument"], - ["argumentation theory", "critical thinking"], - ["argumentation theory", "dialectic"], - ["argumentation theory", "logic and dialectic"], - ["argumentation theory", "logic of argumentation"], - ["argumentation theory", "logical reasoning"], - ["argumentation theory", "public sphere"], - ["argumentation theory", "rationality"], - ["argumentation theory", "rogerian argument"], - ["argumentation theory", "social engineering (political science)"], - ["argumentation theory", "social psychology"], - ["argumentation theory", "source criticism"], - ["argumentation theory", "straight and crooked thinking"], - ["defeater", "argumentation framework"], - ["diagrammatic reasoning", "natural deduction"], - ["diagrammatic reasoning", "propositional calculus"], - ["diagrammatic reasoning", "spatial-temporal reasoning"], - ["diagrammatic reasoning", "visual reasoning"], - ["paraconsistent logic", "intuitionistic logic"], - ["boolean logic", "boolean algebra (structure)"], - ["boolean logic", "boolean algebras canonically defined"], - ["boolean logic", "intuitionistic logic"], - ["boolean logic", "principia mathematica"], - ["boolean logic", "propositional calculus"], - ["boolean logic", "relation algebra"], - ["critical thinking", "age of enlightenment"], - ["critical thinking", "argument"], - ["critical thinking", "argumentation theory"], - ["critical thinking", "cognitive bias mitigation"], - ["critical thinking", "critic"], - ["critical thinking", "demarcation problem"], - ["critical thinking", "dialectic"], - ["critical thinking", "disinformation"], - ["critical thinking", "freedom of thought"], - ["critical thinking", "freethought"], - ["critical thinking", "indoctrination"], - ["critical thinking", "logic"], - ["critical thinking", "logical reasoning"], - ["critical thinking", "philosophy education"], - ["critical thinking", "sapere aude"], - ["critical thinking", "source criticism"], - ["critical thinking", "world philosophy day"], - ["inquiry", "charles sanders peirce bibliography"], - ["inquiry", "c. west churchman"], - ["inquiry", "information theory"], - ["inquiry", "logic of information"], - ["inquiry", "pragmatic theory of truth"], - ["inquiry", "pragmaticism"], - ["inquiry", "research question"], - ["logical reasoning", "analogy"], - ["logical reasoning", "argument"], - ["logical reasoning", "argumentation theory"], - ["logical reasoning", "critical thinking"], - ["logical reasoning", "dialogical logic"], - ["logical reasoning", "fallacy"], - ["logical reasoning", "informal logic"], - ["logical reasoning", "logic"], - ["logical reasoning", "reason"], - ["computational linguistics", "computational models of language acquisition"], - ["computational linguistics", "computational semantics"], - ["computational linguistics", "computer-assisted reviewing"], - ["computational linguistics", "lexicostatistics"], - ["computational linguistics", "natural language processing"], - ["computational linguistics", "natural language user interface"], - ["computational linguistics", "semantic relatedness"], - ["computational linguistics", "universal networking language"], - ["mathematical logic", "argument"], - ["mathematical logic", "informal logic"], - ["mathematical logic", "knowledge representation and reasoning"], - ["mathematical logic", "logic"], - ["mathematical logic", "mereology"], - ["mathematical logic", "propositional calculus"], - ["mathematical logic", "well-formed formula"], - ["sequent calculus", "resolution (logic)"], - ["gerhard gentzen", "bertrand russell"], - ["system l", "natural deduction"], - ["system l", "sequent calculus"], - ["argument", "abductive reasoning"], - ["argument", "argument map"], - ["argument", "argumentation theory"], - ["argument", "bayes' theorem"], - ["argument", "belief bias"], - ["argument", "boolean logic"], - ["argument", "critical thinking"], - ["argument", "dialectic"], - ["argument", "evidence"], - ["argument", "evidence-based policy"], - ["argument", "inquiry"], - ["argument", "logical reasoning"], - ["argument", "practical arguments"], - ["argument", "soundness theorem"], - ["argument", "syllogism"], - ["rogerian argument", "cognitive bias modification"], - ["rogerian argument", "dialogue"], - ["rogerian argument", "dialogue mapping"], - ["rogerian argument", "epistemic virtue"], - ["rogerian argument", "group dynamics"], - ["rogerian argument", "immunity to change"], - ["rogerian argument", "intergroup dialogue"], - ["rogerian argument", "philosophy of dialogue"], - ["rogerian argument", "thesis, antithesis, synthesis"], - ["source criticism", "argumentation theory"], - ["source criticism", "critical thinking"], - ["source criticism", "deception"], - ["method of analytic tableaux", "resolution (logic)"], - ["logic", "logic gate"], - ["propositional calculus", "first-order logic"], - ["propositional calculus", "second-order logic"], - ["propositional calculus", "higher-order logic"], - ["propositional calculus", "boolean algebra (logic)"], - ["propositional calculus", "boolean algebra (structure)"], - ["propositional calculus", "boolean algebra topics"], - ["propositional calculus", "boolean domain"], - ["propositional calculus", "boolean function"], - ["propositional calculus", "boolean-valued function"], - ["propositional calculus", "categorical logic"], - ["propositional calculus", "combinational logic"], - ["propositional calculus", "conceptual graph"], - ["propositional calculus", "entitative graph"], - ["propositional calculus", "existential graph"], - ["propositional calculus", "laws of form"], - ["propositional calculus", "logical graph"], - ["propositional calculus", "logical value"], - ["propositional calculus", "mathematical logic"], - ["propositional calculus", "truth function"], - ["propositional calculus", "truth table"], - ["fallacy", "straight and crooked thinking"], - ["collaborative software", "collaboration technologies"], - ["collaborative software", "telecommuting"], - ["collaborative software", "computer supported cooperative work"], - ["collaborative software", "integrated collaboration environment"], - ["collaborative software", "content management system"], - ["collaborative software", "customer relationship management"], - ["collaborative software", "document management system"], - ["collaborative software", "enterprise content management"], - ["collaborative software", "intranet"], - ["collaborative software", "massively distributed collaboration"], - ["collaborative software", "online consultation"], - ["collaborative software", "online deliberation"], - ["collaborative software", "collaborative innovation network"], - ["collaborative software", "commons-based peer production"], - ["collaborative software", "electronic business"], - ["collaborative software", "information technology management"], - ["collaborative software", "management information systems"], - ["collaborative software", "management"], - ["collaborative software", "office of the future"], - ["collaborative software", "operational transformation"], - ["collaborative software", "organizational memory system"], - ["collaborative software", "cloud collaboration"], - ["collaborative software", "document collaboration"], - ["collaborative software", "mediawiki"], - ["collaborative software", "wikipedia"], - ["computational sociology", "journal of artificial societies and social simulation"], - ["computational sociology", "artificial society"], - ["computational sociology", "simulated reality"], - ["computational sociology", "social simulation"], - ["computational sociology", "agent-based social simulation"], - ["computational sociology", "social complexity"], - ["computational sociology", "computational economics"], - ["computational sociology", "cliodynamics"], - ["computational sociology", "predictive analytics"], - ["creative problem solving", "creativity"], - ["creative problem solving", "collective problem solving"], - ["creative problem solving", "frugal innovation"], - ["creative problem solving", "invention"], - ["creative problem solving", "lateral thinking"], - ["creative problem solving", "problem structuring methods"], - ["creative problem solving", "systems thinking"], - ["creative problem solving", "triz"], - ["deliberation", "argument map"], - ["deliberation", "dialogue mapping"], - ["deliberation", "low-information rationality"], - ["dialogue", "argumentation theory"], - ["dialogue", "collaborative leadership"], - ["dialogue", "deliberation"], - ["dialogue", "dialogical self"], - ["dialogue", "dialogue among civilizations"], - ["dialogue", "dialogue mapping"], - ["dialogue", "intercultural dialogue"], - ["dialogue", "interfaith dialogue"], - ["dialogue", "intergroup dialogue"], - ["dialogue", "rogerian argument"], - ["dialogue", "speech"], - ["knowledge base", "content management"], - ["knowledge base", "database"], - ["knowledge base", "enterprise bookmarking"], - ["knowledge base", "information repository"], - ["knowledge base", "knowledge-based system"], - ["knowledge base", "knowledge graph"], - ["knowledge base", "knowledge management"], - ["knowledge base", "microsoft knowledge base"], - ["knowledge base", "diffbot"], - ["knowledge base", "semantic network"], - ["knowledge base", "text mining"], - ["knowledge base", "wikidata"], - ["knowledge base", "yago (database)"], - ["socratic questioning", "argument map"], - ["socratic questioning", "argumentation theory"], - ["socratic questioning", "inquiry"], - ["socratic questioning", "intellectual virtue"], - ["socratic questioning", "interrogation"], - ["socratic questioning", "issue map"], - ["why–because analysis", "accident"], - ["why–because analysis", "cause–effect graph"], - ["why–because analysis", "fault tree analysis"], - ["why–because analysis", "five whys"], - ["why–because analysis", "ishikawa diagram"], - ["why–because analysis", "issue map"], - ["why–because analysis", "issue tree"], - ["why–because analysis", "root cause analysis"], - ["accident", "root cause analysis"], - ["accident", "safety engineering"], - ["accident", "poka-yoke"], - ["accident", "risk management"], - ["accident", "occupational safety and health"], - ["cause–effect graph", "causal diagram"], - ["cause–effect graph", "decision table"], - ["fault tree analysis", "failure mode and effects analysis"], - ["fault tree analysis", "ishikawa diagram"], - ["fault tree analysis", "reliability engineering"], - ["fault tree analysis", "root cause analysis"], - ["fault tree analysis", "safety engineering"], - ["fault tree analysis", "system safety"], - ["fault tree analysis", "why-because analysis"], - ["five whys", "eight disciplines problem solving"], - ["five whys", "five ws"], - ["five whys", "four causes"], - ["five whys", "issue map"], - ["five whys", "issue tree"], - ["five whys", "root cause analysis"], - ["five whys", "socratic method"], - ["five whys", "why–because analysis"], - ["ishikawa diagram", "seven basic tools of quality"], - ["ishikawa diagram", "five whys"], - ["ishikawa diagram", "issue map"], - ["ishikawa diagram", "issue tree"], - ["ishikawa diagram", "resource management"], - ["issue map", "collaborative software"], - ["issue map", "computational sociology"], - ["issue map", "creative problem solving"], - ["issue map", "critical thinking"], - ["issue map", "deliberation"], - ["issue map", "dialogue"], - ["issue map", "issue tree"], - ["issue map", "knowledge base"], - ["issue map", "personal knowledge base"], - ["issue map", "socratic questioning"], - ["issue map", "why–because analysis"], - ["intellectual virtue", "critical thinking"], - ["intellectual virtue", "epistemic virtue"], - ["lifelog", "personal knowledge base"], - ["comparison of notetaking software", "comparison of text editors"], - ["comparison of notetaking software", "web annotation"], - ["comparison of notetaking software", "comparison of wiki software"], - ["comparison of notetaking software", "comparison of word processors"], - ["comparison of notetaking software", "outliner"], - ["comparison of notetaking software", "personal information manager"], - ["comparison of notetaking software", "personal knowledge base"], - ["content management", "content management interoperability services"], - ["content management", "content management system"], - ["content management", "enterprise content management"], - ["content management", "information architecture"], - ["content management", "snippet management"], - ["database", "comparison of object–relational database management systems"], - ["database", "comparison of relational database management systems"], - ["database", "data store"], - ["knowledge-based system", "knowledge representation and reasoning"], - ["knowledge-based system", "knowledge base"], - ["knowledge-based system", "inference engine"], - ["knowledge-based system", "expert system"], - ["knowledge-based system", "conceptual graph"], - ["knowledge-based system", "semantic web"], - ["knowledge-based system", "neural networks"], - ["microsoft knowledge base", "diffbot"], - ["text mining", "concept mining"], - ["text mining", "news analytics"], - ["text mining", "ontology learning"], - ["text mining", "record linkage"], - ["text mining", "web mining"], - ["horizon scanning", "futurology"], - ["horizon scanning", "risk analysis"], - ["horizon scanning", "scientific lacuna"], - ["horizon scanning", "technology assessment"], - ["horizon scanning", "technology scouting"], - ["collaborative leadership", "collaboration"], - ["collaborative leadership", "wikinomics"], - ["dialogical self", "philosophy of dialogue"], - ["dialogue among civilizations", "centre for dialogue"], - ["dialogue among civilizations", "fethullah gülen"], - ["dialogue among civilizations", "interfaith dialogue"], - ["dialogue among civilizations", "kaiciid dialogue centre"], - ["dialogue among civilizations", "parliament of the world's religions"], - ["interfaith dialogue", "centre for dialogue"], - ["interfaith dialogue", "fethullah gülen"], - ["interfaith dialogue", "intercultural dialogue"], - ["interfaith dialogue", "kaiciid dialogue centre"], - ["interfaith dialogue", "parliament of the world's religions"], - ["intergroup dialogue", "dialogue"], - ["intergroup dialogue", "dialogue mapping"], - ["intergroup dialogue", "group dynamics"], - ["intergroup dialogue", "intercultural dialogue"], - ["intergroup dialogue", "intergroup relations"], - ["speech", "foxp2"], - ["speech", "origin of language"], - ["cognitive bias mitigation", "cognitive bias modification"], - ["cognitive bias mitigation", "critical theory"], - ["cognitive bias mitigation", "critical thinking"], - ["cognitive bias mitigation", "freedom of thought"], - ["cognitive bias mitigation", "freethought"], - ["cognitive bias mitigation", "inquiry"], - ["cognitive bias mitigation", "logic"], - ["critic", "analysis"], - ["critic", "critical theory"], - ["critic", "critical thinking"], - ["critic", "social criticism"], - ["demarcation problem", "idealism"], - ["demarcation problem", "relativism"], - ["disinformation", "social engineering (political science)"], - ["freedom of thought", "freethought"], - ["freedom of thought", "free will"], - ["freedom of thought", "public opinion"], - ["freethought", "freedom of thought"], - ["indoctrination", "groupthink"], - ["philosophy education", "socratic method"], - ["philosophy education", "world philosophy day"], - ["creativity", "adaptive performance"], - ["creativity", "brainstorming"], - ["creativity", "creativity techniques"], - ["creativity", "heroic theory of invention and scientific development"], - ["creativity", "innovation"], - ["creativity", "invention"], - ["creativity", "lateral thinking"], - ["creativity", "multiple discovery"], - ["collective problem solving", "actuarial science"], - ["collective problem solving", "collective intelligence"], - ["collective problem solving", "community of practice"], - ["collective problem solving", "coworking"], - ["collective problem solving", "divergent thinking"], - ["collective problem solving", "innovation"], - ["collective problem solving", "problem structuring methods"], - ["collective problem solving", "wicked problem"], - ["invention", "creativity techniques"], - ["invention", "heroic theory of invention and scientific development"], - ["invention", "multiple discovery"], - ["invention", "technological revolution"], - ["lateral thinking", "creativity techniques"], - ["lateral thinking", "brainstorming"], - ["lateral thinking", "divergent thinking"], - ["lateral thinking", "critical thinking"], - ["lateral thinking", "problem solving"], - ["lateral thinking", "oblique strategies"], - ["lateral thinking", "thinking outside the box"], - ["lateral thinking", "reason"], - ["lateral thinking", "logical reasoning"], - ["lateral thinking", "abductive reasoning"], - ["lateral thinking", "speed thinking"], - ["problem structuring methods", "causal model"], - ["problem structuring methods", "decision conferencing"], - ["problem structuring methods", "group concept mapping"], - ["problem structuring methods", "method engineering"], - ["problem structuring methods", "research question"], - ["artificial society", "complex system"], - ["artificial society", "computational sociology"], - ["artificial society", "emergence"], - ["artificial society", "evolutionary algorithm"], - ["artificial society", "simulated reality"], - ["artificial society", "social complexity"], - ["artificial society", "social simulation"], - ["social simulation", "agent-based computational economics"], - ["social simulation", "agent-based social simulation"], - ["social simulation", "artificial consciousness"], - ["social simulation", "artificial society"], - ["social simulation", "computational sociology"], - ["social simulation", "cliodynamics"], - ["social simulation", "journal of artificial societies and social simulation"], - ["social simulation", "simulated reality"], - ["social simulation", "system dynamics"], - ["agent-based social simulation", "artificial life"], - ["agent-based social simulation", "simulated reality"], - ["agent-based social simulation", "social simulation"], - ["agent-based social simulation", "journal of artificial societies and social simulation"], - ["social complexity", "complexity economics"], - ["social complexity", "complexity theory and organizations"], - ["social complexity", "econophysics"], - ["social complexity", "engaged theory"], - ["social complexity", "personal information management"], - ["social complexity", "aggregate data"], - ["social complexity", "artificial neural network"], - ["social complexity", "dual-phase evolution"], - ["social complexity", "game theory"], - ["social complexity", "multi-agent system"], - ["social complexity", "systemography"], - ["predictive analytics", "actuarial science"], - ["predictive analytics", "computational sociology"], - ["predictive analytics", "disease surveillance"], - ["predictive analytics", "learning analytics"], - ["predictive analytics", "odds algorithm"], - ["predictive analytics", "pattern recognition"], - ["predictive analytics", "social media analytics"], - ["collaboration technologies", "collaborative innovation network"], - ["collaboration technologies", "collaborative leadership"], - ["collaboration technologies", "collaborative software"], - ["collaboration technologies", "commons-based peer production"], - ["collaboration technologies", "critical thinking"], - ["collaboration technologies", "crowdsourcing"], - ["collaboration technologies", "digital collaboration"], - ["collaboration technologies", "facilitation (business)"], - ["collaboration technologies", "knowledge management"], - ["collaboration technologies", "unorganisation"], - ["collaboration technologies", "wikinomics"], - ["collaboration technologies", "outsourcing"], - ["collaboration technologies", "coworking"], - ["telecommuting", "comparison of office suites"], - ["telecommuting", "comparison of file hosting services"], - ["telecommuting", "comparison of cross-platform instant messaging clients"], - ["telecommuting", "coworking"], - ["telecommuting", "outsourcing"], - ["telecommuting", "smart city"], - ["telecommuting", "virtual workplace"], - ["computer supported cooperative work", "collaborative software"], - ["computer supported cooperative work", "collaborative innovation network"], - ["computer supported cooperative work", "collaborative information seeking"], - ["computer supported cooperative work", "computer-supported collaboration"], - ["computer supported cooperative work", "commons-based peer production"], - ["computer supported cooperative work", "integrated collaboration environment"], - ["computer supported cooperative work", "knowledge management"], - ["computer supported cooperative work", "mass collaboration"], - ["computer supported cooperative work", "social peer-to-peer processes"], - ["content management system", "content management"], - ["content management system", "document management system"], - ["content management system", "dynamic web page"], - ["content management system", "enterprise content management"], - ["content management system", "html"], - ["content management system", "information management"], - ["content management system", "knowledge management"], - ["content management system", "revision control"], - ["customer relationship management", "comparison of crm systems"], - ["customer relationship management", "intersubjectivity"], - ["document management system", "construction collaboration technology"], - ["document management system", "document automation"], - ["document management system", "enterprise content management"], - ["document management system", "information repository"], - ["document management system", "information science"], - ["document management system", "knowledge base"], - ["document management system", "knowledge management"], - ["document management system", "library science"], - ["document management system", "revision control"], - ["document management system", "snippet management"], - ["document management system", "taxonomy (general)"], - ["document management system", "technical documentation"], - ["enterprise content management", "content management interoperability services"], - ["enterprise content management", "information governance"], - ["enterprise content management", "information science"], - ["enterprise content management", "content management system"], - ["intranet", "virtual workplace"], - ["massively distributed collaboration", "collective intelligence"], - ["massively distributed collaboration", "digital collaboration"], - ["massively distributed collaboration", "mass communication"], - ["massively distributed collaboration", "open collaboration"], - ["online consultation", "collaborative software"], - ["online consultation", "intranet"], - ["online consultation", "online deliberation"], - ["online consultation", "usability"], - ["online deliberation", "argument map"], - ["online deliberation", "collaborative software"], - ["online deliberation", "computer supported cooperative work"], - ["online deliberation", "deliberation"], - ["online deliberation", "online consultation"], - ["online deliberation", "public sphere"], - ["online deliberation", "web annotation"], - ["collaborative innovation network", "collective intelligence"], - ["collaborative innovation network", "polytely"], - ["collaborative innovation network", "swarm intelligence"], - ["collaborative innovation network", "symbolic interactionism"], - ["collaborative innovation network", "commons-based peer production"], - ["collaborative innovation network", "community of practice"], - ["commons-based peer production", "collaboration"], - ["commons-based peer production", "crowdsourcing"], - ["commons-based peer production", "gift economy"], - ["commons-based peer production", "mass collaboration"], - ["commons-based peer production", "open collaboration"], - ["commons-based peer production", "social peer-to-peer processes"], - ["information technology management", "information resources management journal"], - ["management information systems", "bachelor of computer information systems"], - ["management information systems", "business intelligence"], - ["management information systems", "business performance management"], - ["management information systems", "business rule"], - ["management information systems", "corporate governance of information technology"], - ["management information systems", "data mining"], - ["management information systems", "predictive analytics"], - ["management information systems", "purchase order request"], - ["management information systems", "enterprise architecture"], - ["management information systems", "enterprise information system"], - ["management information systems", "enterprise planning system"], - ["management information systems", "management by objectives"], - ["management information systems", "online analytical processing"], - ["management information systems", "online office suite"], - ["management information systems", "real-time computing"], - ["management information systems", "real-time marketing"], - ["management", "engineering management"], - ["office of the future", "memex"], - ["organizational memory system", "knowledge tagging"], - ["cloud collaboration", "document collaboration"], - ["mediawiki", "semantic mediawiki"], - ["wikipedia", "internet"], - ["wikipedia", "network effect"], - ["wikipedia", "tree structure"], - ["wikipedia", "recursion"], - ["bayesian epistemology", "bayesian probability"], - ["bayesian epistemology", "bayesian inference"], - ["bayesian programming", "bayesian inference"], - ["bayesian programming", "bayesian probability"], - ["bayesian programming", "bayesian spam filtering"], - ["bayesian programming", "belief propagation"], - ["bayesian programming", "expectation-maximization algorithm"], - ["bayesian programming", "factor graph"], - ["bayesian programming", "graphical model"], - ["bayesian programming", "hidden markov model"], - ["bayesian programming", "kalman filter"], - ["bayesian programming", "naive bayes classifier"], - ["bayesian programming", "probabilistic logic"], - ["bayesian programming", "subjective logic"], - ["causal inference", "multivariate statistics"], - ["causal inference", "partial least squares regression"], - ["causal inference", "pathology"], - ["causal inference", "regression analysis"], - ["chow–liu tree", "bayesian network"], - ["chow–liu tree", "knowledge representation"], - ["computational intelligence", "cognitive robotics"], - ["computational intelligence", "computational economics"], - ["computational intelligence", "concept mining"], - ["computational intelligence", "data mining"], - ["deep belief network", "bayesian network"], - ["deep belief network", "deep learning"], - ["dempster–shafer theory", "probabilistic logic"], - ["dempster–shafer theory", "bayes' theorem"], - ["dempster–shafer theory", "bayesian network"], - ["dempster–shafer theory", "subjective logic"], - ["expectation–maximization algorithm", "mixture distribution"], - ["expectation–maximization algorithm", "compound distribution"], - ["expectation–maximization algorithm", "density estimation"], - ["factor graph", "belief propagation"], - ["factor graph", "bayesian inference"], - ["factor graph", "bayesian programming"], - ["factor graph", "bayesian network"], - ["factor graph", "hammersley–clifford theorem"], - ["kalman filter", "data assimilation"], - ["kalman filter", "sliding mode control"], - ["kalman filter", "stochastic differential equation"], - ["memory-prediction framework", "adaptive resonance theory"], - ["memory-prediction framework", "sparse distributed memory"], - ["mixture distribution", "compound distribution"], - ["mixture distribution", "expectation-maximization algorithm"], - ["mixture distribution", "product distribution"], - ["mixture distribution", "mixture (probability)"], - ["mixture distribution", "mixture model"], - ["mixture distribution", "graphical model"], - ["mixture distribution", "hierarchical bayes model"], - ["mixture model", "mixture (probability)"], - ["mixture model", "graphical model"], - ["mixture model", "hierarchical bayes model"], - ["naive bayes classifier", "bayesian spam filtering"], - ["naive bayes classifier", "bayesian network"], - ["naive bayes classifier", "logistic regression"], - ["polytree", "glossary of graph theory"], - ["sensor fusion", "data (computing)"], - ["sensor fusion", "data mining"], - ["sensor fusion", "image fusion"], - ["sensor fusion", "multisensory integration"], - ["sequence alignment", "sequence mining"], - ["sequence alignment", "blast"], - ["variable-order bayesian network", "markov chain"], - ["variable-order bayesian network", "examples of markov chains"], - ["variable-order bayesian network", "markov process"], - ["variable-order bayesian network", "markov chain monte carlo"], - ["variable-order bayesian network", "semi-markov process"], - ["variable-order bayesian network", "artificial intelligence"], - ["decisional balance", "immunity to change"], - ["decisional balance", "issue mapping"], - ["design pattern", "style guide"], - ["design pattern", "anti-pattern"], - ["heuristic", "algorithm"], - ["heuristic", "failure mode and effects analysis"], - ["heuristic", "heuristics in judgment and decision-making"], - ["pattern language", "method engineering"], - ["pattern language", "modularity"], - ["pattern language", "rule of thumb"], - ["pattern language", "systems theory"], - ["rule of thumb", "heuristic"], - ["method engineering", "computer-aided software engineering"], - ["method engineering", "configuration management"], - ["method engineering", "design pattern"], - ["method engineering", "design rationale"], - ["method engineering", "metadata modeling"], - ["method engineering", "pattern language"], - ["method engineering", "technical documentation"], - ["semi-markov process", "markov process"], - ["semi-markov process", "variable-order markov model"], - ["multivariate statistics", "structured data analysis (statistics)"], - ["multivariate statistics", "structural equation modeling"], - ["multivariate statistics", "design of experiments"], - ["multivariate statistics", "exploratory data analysis"], - ["multivariate statistics", "partial least squares regression"], - ["multivariate statistics", "pattern recognition"], - ["multivariate statistics", "principal component analysis"], - ["multivariate statistics", "regression analysis"], - ["multivariate statistics", "statistical interference"], - ["data mining", "association rule learning"], - ["data mining", "bayesian network"], - ["data mining", "statistical classification"], - ["data mining", "cluster analysis"], - ["data mining", "decision tree"], - ["data mining", "ensemble learning"], - ["data mining", "factor analysis"], - ["data mining", "intention mining"], - ["data mining", "multilinear subspace learning"], - ["data mining", "artificial neural network"], - ["data mining", "regression analysis"], - ["data mining", "sequence mining"], - ["data mining", "structured data analysis (statistics)"], - ["data mining", "text mining"], - ["data mining", "time series"], - ["data mining", "analytics"], - ["data mining", "big data"], - ["data mining", "bioinformatics"], - ["data mining", "business intelligence"], - ["data mining", "data analysis"], - ["data mining", "data warehouse"], - ["data mining", "exploratory data analysis"], - ["data mining", "predictive analytics"], - ["data mining", "web mining"], - ["data mining", "customer analytics"], - ["data mining", "educational data mining"], - ["data mining", "data integration"], - ["data mining", "information extraction"], - ["data mining", "information integration"], - ["data mining", "named-entity recognition"], - ["data mining", "social media mining"], - ["density estimation", "kernel density estimation"], - ["density estimation", "mean integrated squared error"], - ["density estimation", "histogram"], - ["density estimation", "multivariate kernel density estimation"], - ["density estimation", "spectral density estimation"], - ["density estimation", "generative model"], - ["density estimation", "order statistic"], - ["density estimation", "probability distribution fitting"], - ["hyperbolic geometry", "hyperbolic 3-manifold"], - ["hyperbolic geometry", "hyperbolic manifold"], - ["hyperbolic geometry", "hjelmslev transformation"], - ["hyperbolic geometry", "hyperbolic tree"], - ["hyperbolic geometry", "kleinian group"], - ["hyperbolic geometry", "lambert quadrilateral"], - ["hyperbolic geometry", "open universe"], - ["hyperbolic geometry", "poincaré metric"], - ["hyperbolic geometry", "saccheri quadrilateral"], - ["hyperbolic geometry", "systolic geometry"], - ["hyperbolic geometry", "δ-hyperbolic space"], - ["hyperbolic geometry", "band model"], - ["binary tiling", "baumslag–solitar group"], - ["binary tiling", "binary tree"], - ["binary tiling", "einstein problem"], - ["binary tiling", "hyperbolic tree"], - ["information visualization", "color coding technology for visualization"], - ["information visualization", "computational visualistics"], - ["information visualization", "data art"], - ["information visualization", "data presentation architecture"], - ["information visualization", "data visualization"], - ["information visualization", "geovisualization"], - ["information visualization", "infographics"], - ["information visualization", "software visualization"], - ["information visualization", "visual analytics"], - ["color coding technology for visualization", "false color"], - ["data art", "warming stripes"], - ["data art", "climate change art"], - ["data art", "data visualization"], - ["data art", "knowledge visualization"], - ["data art", "systems thinking"], - ["data presentation architecture", "analytics"], - ["data presentation architecture", "balanced scorecard"], - ["data presentation architecture", "big data"], - ["data presentation architecture", "business analysis"], - ["data presentation architecture", "business intelligence"], - ["data presentation architecture", "climate change art"], - ["data presentation architecture", "color coding technology for visualization"], - ["data presentation architecture", "dashboard (business)"], - ["data presentation architecture", "data analysis"], - ["data presentation architecture", "data art"], - ["data presentation architecture", "data profiling"], - ["data presentation architecture", "data science"], - ["data presentation architecture", "data warehouse"], - ["data presentation architecture", "exploratory data analysis"], - ["data presentation architecture", "infographic"], - ["data presentation architecture", "information architecture"], - ["data presentation architecture", "information design"], - ["data presentation architecture", "information visualization"], - ["data presentation architecture", "interaction design"], - ["data presentation architecture", "interaction techniques"], - ["data presentation architecture", "scientific visualization"], - ["data presentation architecture", "software visualization"], - ["data presentation architecture", "statistical analysis"], - ["data presentation architecture", "statistical graphics"], - ["data presentation architecture", "visual analytics"], - ["data presentation architecture", "visual journalism"], - ["data presentation architecture", "warming stripes"], - ["data visualization", "analytics"], - ["data visualization", "balanced scorecard"], - ["data visualization", "big data"], - ["data visualization", "business analysis"], - ["data visualization", "business intelligence"], - ["data visualization", "climate change art"], - ["data visualization", "color coding technology for visualization"], - ["data visualization", "dashboard (business)"], - ["data visualization", "data analysis"], - ["data visualization", "data art"], - ["data visualization", "data profiling"], - ["data visualization", "data science"], - ["data visualization", "data warehouse"], - ["data visualization", "exploratory data analysis"], - ["data visualization", "infographic"], - ["data visualization", "information architecture"], - ["data visualization", "information design"], - ["data visualization", "information visualization"], - ["data visualization", "interaction design"], - ["data visualization", "interaction techniques"], - ["data visualization", "scientific visualization"], - ["data visualization", "software visualization"], - ["data visualization", "statistical analysis"], - ["data visualization", "statistical graphics"], - ["data visualization", "visual analytics"], - ["data visualization", "visual journalism"], - ["data visualization", "warming stripes"], - ["infographics", "a picture is worth a thousand words"], - ["infographics", "argument map"], - ["infographics", "charts"], - ["infographics", "dashboards (management information systems)"], - ["infographics", "data presentation architecture"], - ["infographics", "data visualization"], - ["infographics", "edugraphic"], - ["infographics", "graphic design"], - ["infographics", "graphic image development"], - ["infographics", "graphic organizer"], - ["infographics", "information design"], - ["infographics", "scientific visualization"], - ["infographics", "statistical graphics"], - ["infographics", "technical illustration"], - ["infographics", "isotype (picture language)"], - ["infographics", "timeline"], - ["infographics", "visualization (graphic)"], - ["infographics", "news illustrated"], - ["infographics", "maestro concept"], - ["infographics", "family tree"], - ["software visualization", "software maintenance"], - ["software visualization", "software archaeology"], - ["visual analytics", "cartography"], - ["visual analytics", "computational visualistics"], - ["visual analytics", "critical thinking"], - ["visual analytics", "decision-making"], - ["visual analytics", "interaction design"], - ["visual analytics", "social network analysis software"], - ["visual analytics", "software visualization"], - ["visual analytics", "text analytics"], - ["visual analytics", "visual reasoning"], - ["baumslag–solitar group", "binary tiling"], - ["binary tree", "2–3 tree"], - ["binary tree", "2–3–4 tree"], - ["binary tree", "aa tree"], - ["binary tree", "avl tree"], - ["binary tree", "b-tree"], - ["binary tree", "binary space partitioning"], - ["binary tree", "recursion (computer science)"], - ["binary tree", "red–black tree"], - ["binary tree", "splay tree"], - ["binary tree", "unrooted binary tree"], - ["einstein problem", "binary tiling"], - ["decision-making", "adaptive performance"], - ["decision-making", "argument map"], - ["decision-making", "concept driven strategy"], - ["decision-making", "decision quality"], - ["decision-making", "free will"], - ["decision-making", "idea networking"], - ["decision-making", "rational choice theory"], - ["social network analysis software", "comparison of research networking tools and research profiling systems"], - ["social network analysis software", "social network"], - ["social network analysis software", "social network analysis"], - ["social network analysis software", "social networking"], - ["charts", "comparison of adobe flex charts"], - ["charts", "diagram"], - ["charts", "table (information)"], - ["charts", "drakon"], - ["charts", "exploratory data analysis"], - ["charts", "graphic organizer"], - ["charts", "information graphics"], - ["charts", "mathematical diagram"], - ["charts", "official statistics"], - ["charts", "plot (graphics)"], - ["charts", "edward tufte"], - ["charts", "misleading graph"], - ["dashboards (management information systems)", "business activity monitoring"], - ["dashboards (management information systems)", "complex event processing"], - ["dashboards (management information systems)", "corporate performance management"], - ["dashboards (management information systems)", "data presentation architecture"], - ["dashboards (management information systems)", "enterprise manufacturing intelligence"], - ["dashboards (management information systems)", "event stream processing"], - ["dashboards (management information systems)", "infographic"], - ["dashboards (management information systems)", "information design"], - ["dashboards (management information systems)", "scientific visualization"], - ["dashboards (management information systems)", "control panel (software)"], - ["graphic design", "illustration"], - ["graphic design", "information technology"], - ["graphic design", "technical illustration"], - ["graphic design", "user experience design"], - ["graphic design", "infographic"], - ["graphic design", "style guide"], - ["graphic image development", "illustration"], - ["graphic organizer", "diagram"], - ["graphic organizer", "visualization (graphic)"], - ["information design", "cartography"], - ["information design", "chief experience officer"], - ["information design", "content management"], - ["information design", "epidemiology"], - ["information design", "knowledge visualization"], - ["information design", "signage"], - ["information design", "statistics"], - ["information design", "technical illustration"], - ["information design", "wayfinding"], - ["scientific visualization", "data presentation architecture"], - ["scientific visualization", "data visualization"], - ["scientific visualization", "mathematical visualization"], - ["scientific visualization", "molecular graphics"], - ["scientific visualization", "visual analytics"], - ["statistical graphics", "data presentation architecture"], - ["statistical graphics", "chart"], - ["technical illustration", "information graphics"], - ["isotype (picture language)", "data visualization"], - ["isotype (picture language)", "information design"], - ["isotype (picture language)", "information graphics"], - ["analytics", "analysis"], - ["analytics", "analytic applications"], - ["analytics", "architectural analytics"], - ["analytics", "behavioral analytics"], - ["analytics", "business analytics"], - ["analytics", "business intelligence"], - ["analytics", "complex event processing"], - ["analytics", "customer analytics"], - ["analytics", "dashboard (business)"], - ["analytics", "data mining"], - ["analytics", "data presentation architecture"], - ["analytics", "learning analytics"], - ["analytics", "mobile location analytics"], - ["analytics", "news analytics"], - ["analytics", "online analytical processing"], - ["analytics", "online video analytics"], - ["analytics", "operational reporting"], - ["analytics", "operations research"], - ["analytics", "prediction"], - ["analytics", "predictive analytics"], - ["analytics", "predictive engineering analytics"], - ["analytics", "prescriptive analytics"], - ["analytics", "semantic analytics"], - ["analytics", "smart grid"], - ["analytics", "software analytics"], - ["analytics", "speech analytics"], - ["analytics", "statistics"], - ["analytics", "user behavior analytics"], - ["analytics", "visual analytics"], - ["analytics", "web analytics"], - ["business intelligence", "analytic applications"], - ["business intelligence", "artificial intelligence marketing"], - ["business intelligence", "business activity monitoring"], - ["business intelligence", "business intelligence 2.0"], - ["business intelligence", "business process discovery"], - ["business intelligence", "business process management"], - ["business intelligence", "customer dynamics"], - ["business intelligence", "decision engineering"], - ["business intelligence", "enterprise planning systems"], - ["business intelligence", "integrated business planning"], - ["business intelligence", "management information system"], - ["business intelligence", "mobile business intelligence"], - ["business intelligence", "operational intelligence"], - ["business intelligence", "process mining"], - ["business intelligence", "real-time business intelligence"], - ["business intelligence", "sales intelligence"], - ["business intelligence", "test and learn"], - ["dashboard (business)", "business activity monitoring"], - ["dashboard (business)", "complex event processing"], - ["dashboard (business)", "corporate performance management"], - ["dashboard (business)", "data presentation architecture"], - ["dashboard (business)", "enterprise manufacturing intelligence"], - ["dashboard (business)", "event stream processing"], - ["dashboard (business)", "infographic"], - ["dashboard (business)", "information design"], - ["dashboard (business)", "scientific visualization"], - ["dashboard (business)", "control panel (software)"], - ["information architecture", "card sorting"], - ["information architecture", "chief experience officer"], - ["information architecture", "content management"], - ["information architecture", "controlled vocabulary"], - ["information architecture", "data management"], - ["information architecture", "data presentation architecture"], - ["information architecture", "digital humanities"], - ["information architecture", "enterprise information security architecture"], - ["information architecture", "faceted classification"], - ["information architecture", "informatics"], - ["information architecture", "interaction design"], - ["information architecture", "process architecture"], - ["information architecture", "tree testing"], - ["information architecture", "user experience design"], - ["information architecture", "wayfinding"], - ["information architecture", "web graph"], - ["false color", "nasa world wind"], - ["false color", "imaginary colors"], - ["false color", "hyperspectral imaging"], - ["formal grammar", "abstract syntax tree"], - ["formal grammar", "extended backus–naur form"], - ["formal grammar", "shape grammar"], - ["formal grammar", "well-formed formula"], - ["hyperbolic manifold", "hyperbolic 3-manifold"], - ["poincaré metric", "kleinian group"], - ["saccheri quadrilateral", "lambert quadrilateral"], - ["boolean domain", "boolean-valued function"], - ["boolean-valued function", "boolean algebra (logic)"], - ["boolean-valued function", "boolean domain"], - ["boolean-valued function", "boolean logic"], - ["boolean-valued function", "propositional calculus"], - ["boolean-valued function", "truth table"], - ["boolean-valued function", "indicator function"], - ["boolean-valued function", "boolean function"], - ["first-order logic", "extension (predicate logic)"], - ["first-order logic", "higher-order logic"], - ["first-order logic", "relational algebra"], - ["first-order logic", "relational model"], - ["first-order logic", "second-order logic"], - ["first-order logic", "truth table"], - ["first-order logic", "type (model theory)"], - ["functional completeness", "algebra of sets"], - ["functional completeness", "boolean algebra"], - ["karnaugh maps", "algebraic normal form"], - ["karnaugh maps", "binary decision diagram"], - ["karnaugh maps", "espresso heuristic logic minimizer"], - ["karnaugh maps", "logic optimization"], - ["karnaugh maps", "punnett square"], - ["karnaugh maps", "quine–mccluskey algorithm"], - ["karnaugh maps", "reed–muller expansion"], - ["karnaugh maps", "venn diagram"], - ["karnaugh maps", "zhegalkin polynomial"], - ["logic gate", "boolean algebra topics"], - ["logic gate", "boolean function"], - ["logic gate", "espresso heuristic logic minimizer"], - ["logic gate", "functional completeness"], - ["logic gate", "karnaugh map"], - ["logic gate", "combinational logic"], - ["logic gate", "logical graph"], - ["logic gate", "propositional calculus"], - ["logic gate", "truth table"], - ["logical connective", "boolean domain"], - ["logical connective", "boolean function"], - ["logical connective", "boolean logic"], - ["logical connective", "boolean-valued function"], - ["logical connective", "four-valued logic"], - ["logical connective", "logical constant"], - ["logical connective", "modal operator"], - ["logical connective", "propositional calculus"], - ["logical connective", "truth function"], - ["logical connective", "truth table"], - ["logical connective", "truth value"], - ["truth function", "bertrand russell"], - ["truth function", "principia mathematica"], - ["truth function", "bitwise operation"], - ["truth function", "boolean domain"], - ["truth function", "boolean function"], - ["truth function", "boolean logic"], - ["truth function", "boolean-valued function"], - ["truth function", "logical connective"], - ["truth function", "logical constant"], - ["truth function", "modal operator"], - ["truth function", "propositional calculus"], - ["truth function", "truth table"], - ["truth function", "truth value"], - ["boolean function", "boolean-valued function"], - ["boolean function", "algebra of sets"], - ["boolean function", "decision tree model"], - ["boolean function", "indicator function"], - ["logical constant", "logical value"], - ["logical constant", "logical connective"], - ["truth value", "bayesian probability"], - ["truth value", "false dilemma"], - ["laws of form", "boolean algebra (logic)"], - ["laws of form", "boolean algebra (structure)"], - ["laws of form", "boolean algebras canonically defined"], - ["laws of form", "boolean logic"], - ["laws of form", "entitative graph"], - ["laws of form", "existential graph"], - ["laws of form", "propositional calculus"], - ["karnaugh map", "algebraic normal form"], - ["karnaugh map", "binary decision diagram"], - ["karnaugh map", "espresso heuristic logic minimizer"], - ["karnaugh map", "logic optimization"], - ["karnaugh map", "punnett square"], - ["karnaugh map", "quine–mccluskey algorithm"], - ["karnaugh map", "reed–muller expansion"], - ["karnaugh map", "venn diagram"], - ["karnaugh map", "zhegalkin polynomial"], - ["algebraic normal form", "reed–muller expansion"], - ["algebraic normal form", "zhegalkin normal form"], - ["algebraic normal form", "boolean function"], - ["algebraic normal form", "logical graph"], - ["algebraic normal form", "zhegalkin polynomial"], - ["algebraic normal form", "karnaugh map"], - ["binary decision diagram", "model checking"], - ["binary decision diagram", "radix tree"], - ["binary decision diagram", "karnaugh map"], - ["logic optimization", "binary decision diagram"], - ["punnett square", "karnaugh map"], - ["reed–muller expansion", "algebraic normal form"], - ["reed–muller expansion", "ring sum normal form"], - ["reed–muller expansion", "zhegalkin normal form"], - ["reed–muller expansion", "karnaugh map"], - ["zhegalkin polynomial", "algebraic normal form"], - ["zhegalkin polynomial", "ring sum normal form"], - ["zhegalkin polynomial", "boolean domain"], - ["zhegalkin polynomial", "boolean-valued function"], - ["relational algebra", "cartesian product"], - ["relational algebra", "d (data language specification)"], - ["relational algebra", "database"], - ["relational algebra", "logic of relatives"], - ["relational algebra", "object-role modeling"], - ["relational algebra", "projection (mathematics)"], - ["relational algebra", "projection (relational algebra)"], - ["relational algebra", "projection (set theory)"], - ["relational algebra", "relation (mathematics)"], - ["relational algebra", "relation (database)"], - ["relational algebra", "relation algebra"], - ["relational algebra", "relation composition"], - ["relational algebra", "relation construction"], - ["relational algebra", "relational calculus"], - ["relational algebra", "relational database"], - ["relational algebra", "relational model"], - ["relational algebra", "theory of relations"], - ["relational algebra", "triadic relation"], - ["relational algebra", "tuple relational calculus"], - ["relational algebra", "sql"], - ["relational algebra", "datalog"], - ["relational algebra", "codd's theorem"], - ["sperner's lemma", "topological combinatorics"], - ["discrete exterior calculus", "topological combinatorics"], - ["combinatorial topology", "topological combinatorics"], - ["combinatorial topology", "topological graph theory"], - ["finite topological space", "topological combinatorics"], - ["odds", "odds algorithm"], - ["odds", "logistic regression"], - ["odds", "optimal stopping"], - ["clinical trial", "odds algorithm"], - ["secretary problem", "assignment problem"], - ["secretary problem", "odds algorithm"], - ["secretary problem", "optimal stopping"], - ["decision tree learning", "binary decision diagram"], - ["decision tree learning", "predictive analytics"], - ["decision tree learning", "decision stump"], - ["decision tree learning", "adaboost"], - ["decision tree learning", "decision list"], - ["decision tree learning", "alternating decision tree"], - ["decision tree learning", "structured data analysis (statistics)"], - ["decision tree learning", "logistic model tree"], - ["decision tree learning", "hierarchical clustering"], - ["gradient boosting", "adaboost"], - ["gradient boosting", "random forest"], - ["gradient boosting", "decision tree learning"], - ["non-parametric statistics", "resampling (statistics)"], - ["markov chain approximation method", "control theory"], - ["markov chain approximation method", "optimal control"], - ["markov chain approximation method", "stochastic differential equation"], - ["markov chain approximation method", "stochastic process"], - ["markov decision process", "quantum finite automata"], - ["markov decision process", "dynamic programming"], - ["markov decision process", "optimal control"], - ["markov random field", "graphical model"], - ["markov random field", "hammersley–clifford theorem"], - ["markov random field", "markov chain"], - ["markov random field", "stochastic cellular automaton"], - ["variable-order markov model", "examples of markov chains"], - ["variable-order markov model", "markov process"], - ["variable-order markov model", "markov chain monte carlo"], - ["variable-order markov model", "semi-markov process"], - ["variable-order markov model", "artificial intelligence"], - ["goal structuring notation", "design rationale"], - ["adaboost", "bootstrap aggregating"], - ["adaboost", "coboosting"], - ["adaboost", "brownboost"], - ["adaboost", "gradient boosting"], - ["bootstrap aggregating", "boosting (meta-algorithm)"], - ["bootstrap aggregating", "bootstrapping (statistics)"], - ["bootstrap aggregating", "cross-validation (statistics)"], - ["bootstrap aggregating", "out-of-bag error"], - ["bootstrap aggregating", "random forest"], - ["bootstrap aggregating", "predictive analytics"], - ["cascading classifiers", "boosting (meta-algorithm)"], - ["cascading classifiers", "bootstrap aggregating"], - ["brownboost", "boosting (machine learning)"], - ["brownboost", "adaboost"], - ["brownboost", "alternating decision tree"], - ["principle of maximum entropy", "maximum entropy probability distribution"], - ["principle of maximum entropy", "maximum entropy spectral estimation"], - ["neural network", "adaptive resonance theory"], - ["neural network", "cognitive architecture"], - ["neural network", "cognitive science"], - ["neural network", "deep learning"], - ["neural network", "evolutionary algorithm"], - ["neural network", "genetic algorithm"], - ["neural network", "gene expression programming"], - ["neural network", "in situ adaptive tabulation"], - ["neural network", "multilinear subspace learning"], - ["neural network", "predictive analytics"], - ["neural network", "radial basis function network"], - ["neural network", "simulated reality"], - ["neural network", "support vector machine"], - ["support vector machine", "in situ adaptive tabulation"], - ["support vector machine", "predictive analytics"], - ["support vector machine", "space mapping"], - ["cross-validation (statistics)", "boosting (machine learning)"], - ["cross-validation (statistics)", "bootstrap aggregating"], - ["cross-validation (statistics)", "out-of-bag error"], - ["cross-validation (statistics)", "bootstrapping (statistics)"], - ["cross-validation (statistics)", "model selection"], - ["cross-validation (statistics)", "resampling (statistics)"], - ["decision stump", "decision list"], - ["case based reasoning", "abductive reasoning"], - ["case based reasoning", "commonsense reasoning"], - ["case based reasoning", "decision tree"], - ["case based reasoning", "genetic algorithm"], - ["case based reasoning", "pattern matching"], - ["case based reasoning", "analogy"], - ["case based reasoning", "ripple down rules"], - ["karnaugh-veitch diagram", "algebraic normal form"], - ["karnaugh-veitch diagram", "binary decision diagram"], - ["karnaugh-veitch diagram", "espresso heuristic logic minimizer"], - ["karnaugh-veitch diagram", "logic optimization"], - ["karnaugh-veitch diagram", "punnett square"], - ["karnaugh-veitch diagram", "quine–mccluskey algorithm"], - ["karnaugh-veitch diagram", "reed–muller expansion"], - ["karnaugh-veitch diagram", "venn diagram"], - ["karnaugh-veitch diagram", "zhegalkin polynomial"], - ["many-valued logic", "degrees of truth"], - ["many-valued logic", "fuzzy logic"], - ["many-valued logic", "principle of bivalence"], - ["many-valued logic", "false dilemma"], - ["adaptive management", "decision cycle"], - ["adaptive management", "ecology"], - ["adaptive management", "learning cycle"], - ["adaptive management", "operations research"], - ["decisional balance sheet", "immunity to change"], - ["decisional balance sheet", "issue mapping"], - ["systems development lifecycle", "application lifecycle management"], - ["systems development lifecycle", "decision cycle"], - ["systems development lifecycle", "ipo model"], - ["systems development lifecycle", "software development methodologies"], - ["virtuous circle and vicious circle", "causal loop diagram"], - ["virtuous circle and vicious circle", "positive feedback"], - ["intelligence cycle", "decision cycle"], - ["intelligence cycle", "learning cycle"], - ["intelligence cycle", "ooda loop"], - ["hybrid system", "sliding mode control"], - ["subsumption architecture", "cognitive architecture"], - ["multilinear subspace learning", "dimension reduction"], - ["multilinear subspace learning", "tensor"], - ["multilinear subspace learning", "tensor decomposition"], - ["multilinear subspace learning", "tensor software"], - ["risk analysis", "risk assessment"], - ["risk analysis", "optimism bias"], - ["risk analysis", "precautionary principle"], - ["risk analysis", "risk management tools"], - ["risk analysis", "reference class forecasting"], - ["technology assessment", "horizon scanning"], - ["technology assessment", "scientific lacuna"], - ["technology assessment", "technology dynamics"], - ["technology scouting", "futurology"], - ["technology scouting", "horizon scanning"], - ["technology scouting", "scientific lacuna"], - ["eight disciplines problem solving", "corrective and preventive action"], - ["eight disciplines problem solving", "failure mode and effects analysis"], - ["eight disciplines problem solving", "fault tree analysis"], - ["eight disciplines problem solving", "quality management system"], - ["eight disciplines problem solving", "problem solving"], - ["eight disciplines problem solving", "a3 problem solving"], - ["five ws", "five whys"], - ["why-because analysis", "accident"], - ["why-because analysis", "cause–effect graph"], - ["why-because analysis", "fault tree analysis"], - ["why-because analysis", "five whys"], - ["why-because analysis", "ishikawa diagram"], - ["why-because analysis", "issue map"], - ["why-because analysis", "issue tree"], - ["why-because analysis", "root cause analysis"], - ["corrective and preventive action", "eight disciplines problem solving"], - ["corrective and preventive action", "good documentation practice"], - ["corrective and preventive action", "good automated manufacturing practice"], - ["logic of information", "charles sanders peirce bibliography"], - ["logic of information", "information theory"], - ["logic of information", "inquiry"], - ["logic of information", "philosophy of information"], - ["logic of information", "pragmatic theory of truth"], - ["logic of information", "pragmaticism"], - ["logic of information", "scientific method"], - ["logic of information", "triadic relation"], - ["news analytics", "computational linguistics"], - ["news analytics", "text mining"], - ["news analytics", "natural language processing"], - ["ontology learning", "computational linguistics"], - ["ontology learning", "ontology (computer science)"], - ["ontology learning", "information extraction"], - ["ontology learning", "natural language understanding"], - ["ontology learning", "semantic web"], - ["ontology learning", "text mining"], - ["social networking", "collective intelligence"], - ["social networking", "comparison of research networking tools and research profiling systems"], - ["social networking", "enterprise bookmarking"], - ["social networking", "internet"], - ["social networking", "internet think tanks"], - ["social networking", "lateral diffusion"], - ["social networking", "mass collaboration"], - ["social networking", "social software"], - ["social networking", "social web"], - ["comparison of word processors", "comparison of spreadsheet software"], - ["comparison of word processors", "comparison of text editors"], - ["comparison of word processors", "comparison of office suites"], - ["comparison of word processors", "office suite"], - ["comparison of word processors", "online office suite"], - ["analysis", "methodology"], - ["analysis", "scientific method"], - ["online analytical processing", "comparison of olap servers"], - ["polytely", "cognitive science"], - ["polytely", "game theory"], - ["polytely", "multi-agent system"], - ["polytely", "network science"], - ["polytely", "organizational studies"], - ["polytely", "problem solving"], - ["polytely", "systems theory"], - ["html", "dynamic web page"], - ["html", "microdata (html)"], - ["html", "microformat"], - ["learning analytics", "analytics"], - ["learning analytics", "big data"], - ["learning analytics", "data mining"], - ["learning analytics", "educational data mining"], - ["learning analytics", "machine learning"], - ["learning analytics", "odds algorithm"], - ["learning analytics", "pattern recognition"], - ["learning analytics", "predictive analytics"], - ["learning analytics", "social network analysis"], - ["learning analytics", "text analytics"], - ["learning analytics", "web analytics"], - ["facilitation (business)", "decision conferencing"], - ["facilitation (business)", "dialogue mapping"], - ["computer-supported collaboration", "citizen science"], - ["computer-supported collaboration", "collaborative information seeking"], - ["computer-supported collaboration", "integrated collaboration environment"], - ["computer-supported collaboration", "mass collaboration"], - ["computer-supported collaboration", "wicked problem"], - ["comparison of office suites", "comparison of word processors"], - ["comparison of office suites", "comparison of spreadsheet software"], - ["game theory", "applied ethics"], - ["game theory", "precautionary principle"], - ["game theory", "risk management"], - ["game theory", "tragedy of the commons"], - ["gratis versus libre", "gift economy"], - ["comparison of user features of messaging platforms", "comparison of cross-platform instant messaging clients"], - ["complex system", "biological organisation"], - ["complex system", "chaos theory"], - ["complex system", "cognitive science"], - ["complex system", "complex adaptive system"], - ["complex system", "complex networks"], - ["complex system", "complexity economics"], - ["complex system", "decision engineering"], - ["complex system", "dissipative system"], - ["complex system", "dual-phase evolution"], - ["complex system", "dynamical system"], - ["complex system", "dynamical systems theory"], - ["complex system", "emergence"], - ["complex system", "enterprise systems engineering"], - ["complex system", "fractal"], - ["complex system", "hierarchy theory"], - ["complex system", "interdependent networks"], - ["complex system", "multi-agent system"], - ["complex system", "network science"], - ["complex system", "percolation"], - ["complex system", "percolation theory"], - ["complex system", "process architecture"], - ["complex system", "self-organization"], - ["complex system", "sociology and complexity science"], - ["complex system", "system accident"], - ["complex system", "system dynamics"], - ["complex system", "systems theory"], - ["complex system", "tektology"], - ["time series", "digital signal processing"], - ["time series", "estimation theory"], - ["time series", "forecasting"], - ["time series", "monte carlo method"], - ["time series", "signal processing"], - ["time series", "trend estimation"], - ["network topology", "computer network diagram"], - ["network topology", "rhizome (philosophy)"], - ["network topology", "tree structure"], - ["conceptual schema", "concept mapping"], - ["conceptual schema", "conceptual framework"], - ["conceptual schema", "conceptual graphs"], - ["conceptual schema", "conceptual model (computer science)"], - ["conceptual schema", "data modeling"], - ["conceptual schema", "entity-relationship model"], - ["conceptual schema", "object-relationship modelling"], - ["conceptual schema", "object-role modeling"], - ["conceptual schema", "knowledge representation"], - ["conceptual schema", "logical data model"], - ["conceptual schema", "mindmap"], - ["conceptual schema", "ontology (computer science)"], - ["conceptual schema", "physical data model"], - ["conceptual schema", "semantic web"], - ["conceptual schema", "three schema approach"], - ["information flow diagram", "access control matrix"], - ["information flow diagram", "business process model and notation"], - ["information flow diagram", "information cascade"], - ["information flow diagram", "information systems"], - ["information flow diagram", "niam"], - ["information flow diagram", "object-role modeling"], - ["information flow diagram", "system context diagram"], - ["information flow diagram", "systems thinking"], - ["ontology double articulation", "ontology modularization"], - ["ontology engineering", "ontology (information science)"], - ["ontology engineering", "ontology double articulation"], - ["ontology engineering", "ontology learning"], - ["ontology engineering", "ontology modularization"], - ["ontology engineering", "semantic decision table"], - ["ontology engineering", "semantic integration"], - ["ontology engineering", "semantic technology"], - ["ontology engineering", "semantic web"], - ["ontology engineering", "linked data"], - ["three schema approach", "conceptual schema"], - ["three schema approach", "data model"], - ["three schema approach", "data modeling"], - ["three schema approach", "entity-relationship model"], - ["three schema approach", "information systems"], - ["three schema approach", "object-role modeling"], - ["three schema approach", "view model"], - ["corporate interlocks", "cartel"], - ["corporate interlocks", "insider trading"], - ["corporate interlocks", "oligarchy"], - ["corporate interlocks", "price fixing"], - ["corporate interlocks", "revolving door (politics)"], - ["corporate interlocks", "social class"], - ["diagram", "chart"], - ["diagram", "table (information)"], - ["diagram", "diagrammatic reasoning"], - ["diagram", "experience model"], - ["diagram", "mathematical diagram"], - ["diagram", "plot (graphics)"], - ["network science", "cascading failure"], - ["network science", "climate as complex networks"], - ["network science", "collaborative innovation network"], - ["network science", "complex network"], - ["network science", "core-periphery structure"], - ["network science", "dual-phase evolution"], - ["network science", "erdős–rényi model"], - ["network science", "glossary of graph theory"], - ["network science", "higher category theory"], - ["network science", "irregular warfare"], - ["network science", "interdependent networks"], - ["network science", "network management"], - ["network science", "network dynamics"], - ["network science", "network theory in risk assessment"], - ["network science", "network topology"], - ["network science", "percolation"], - ["network science", "percolation theory"], - ["network science", "policy network analysis"], - ["network science", "polytely"], - ["network science", "quantum complex network"], - ["network science", "random networks"], - ["network science", "scale-free networks"], - ["network science", "sequential dynamical system"], - ["network science", "service network"], - ["network science", "small-world networks"], - ["network science", "structural cut-off"], - ["network science", "systems theory"], - ["social balance theory", "balance theory"], - ["social balance theory", "sociogram"], - ["sociomapping", "participatory rural appraisal"], - ["sociomapping", "high-performance teams"], - ["sociomapping", "human resources"], - ["sociomapping", "marketing research"], - ["sociomapping", "sociometry"], - ["sociomapping", "team management"], - ["sociometry", "psychodrama"], - ["sociometry", "social interaction"], - ["sociometry", "social status"], - ["sociometry", "socionics"], - ["psychodrama", "sociometry"], - ["social interaction", "social isolation"], - ["social interaction", "symbolic interactionism"], - ["social interaction", "engaged theory"], - ["social interaction", "social psychology"], - ["social status", "power (social and political)"], - ["social status", "ranked society"], - ["social status", "social class"], - ["social status", "social stratification"], - ["socionics", "japhetic theory"], - ["participatory rural appraisal", "problem structuring methods"], - ["human resources", "human resource management"], - ["human resources", "industrial and organizational psychology"], - ["marketing research", "a/b testing"], - ["marketing research", "knowledge management"], - ["team management", "management"], - ["team management", "socionics"], - ["balance theory", "social balance theory"], - ["cascading failure", "butterfly effect"], - ["cascading failure", "chaos theory"], - ["cascading failure", "network science"], - ["cascading failure", "network theory"], - ["cascading failure", "interdependent networks"], - ["cascading failure", "percolation theory"], - ["cascading failure", "virtuous circle and vicious circle"], - ["cascading failure", "wicked problem"], - ["climate as complex networks", "community structure"], - ["climate as complex networks", "network theory"], - ["climate as complex networks", "network science"], - ["complex network", "community structure"], - ["complex network", "complex adaptive system"], - ["complex network", "complex systems"], - ["complex network", "dual-phase evolution"], - ["complex network", "dynamic network analysis"], - ["complex network", "interdependent networks"], - ["complex network", "network theory"], - ["complex network", "network science"], - ["complex network", "percolation theory"], - ["complex network", "random graph"], - ["complex network", "random graph theory of gelation"], - ["complex network", "scale-free networks"], - ["complex network", "spatial network"], - ["interdependent networks", "cascading failure"], - ["interdependent networks", "complex networks"], - ["interdependent networks", "network science"], - ["interdependent networks", "percolation theory"], - ["network management", "integrated business planning"], - ["network dynamics", "dynamic network analysis"], - ["network dynamics", "neural network"], - ["network dynamics", "gene regulatory network"], - ["network dynamics", "dynamic bayesian network"], - ["network dynamics", "dual-phase evolution"], - ["network dynamics", "technology dynamics"], - ["policy network analysis", "rational choice theory"], - ["policy network analysis", "network science"], - ["quantum complex network", "erdős–rényi model"], - ["random networks", "ford–fulkerson algorithm"], - ["random networks", "shortest path problem"], - ["sequential dynamical system", "gene regulatory network"], - ["sequential dynamical system", "dynamic bayesian network"], - ["sequential dynamical system", "petri net"], - ["service network", "enterprise 2.0"], - ["structural cut-off", "complex network"], - ["petri net", "process architecture"], - ["integrated business planning", "business process modeling"], - ["integrated business planning", "business reference model"], - ["integrated business planning", "business intelligence"], - ["chart", "comparison of adobe flex charts"], - ["chart", "diagram"], - ["chart", "table (information)"], - ["chart", "drakon"], - ["chart", "exploratory data analysis"], - ["chart", "graphic organizer"], - ["chart", "information graphics"], - ["chart", "mathematical diagram"], - ["chart", "official statistics"], - ["chart", "plot (graphics)"], - ["chart", "edward tufte"], - ["chart", "misleading graph"], - ["experience model", "customer experience"], - ["experience model", "user experience"], - ["experience model", "user experience design"], - ["mathematical diagram", "category theory"], - ["mathematical diagram", "mathematical visualization"], - ["plot (graphics)", "chart"], - ["plot (graphics)", "diagram"], - ["plot (graphics)", "graph of a function"], - ["plot (graphics)", "line chart"], - ["cartel", "corporate group"], - ["oligarchy", "netocracy"], - ["oligarchy", "oligopoly"], - ["price fixing", "oligopoly"], - ["social class", "ranked society"], - ["social class", "social stratification"], - ["graph of a function", "chart"], - ["abstract data type", "concept (generic programming)"], - ["abstract data type", "formal methods"], - ["abstract data type", "functional specification"], - ["abstract data type", "generalized algebraic data type"], - ["abstract data type", "initial algebra"], - ["abstract data type", "liskov substitution principle"], - ["abstract data type", "type theory"], - ["column (database)", "column-oriented dbms"], - ["column (database)", "column (data store)"], - ["column (database)", "distributed data store"], - ["column (database)", "row (database)"], - ["column (database)", "sql"], - ["column (database)", "query language"], - ["information graphics", "a picture is worth a thousand words"], - ["information graphics", "argument map"], - ["information graphics", "charts"], - ["information graphics", "dashboards (management information systems)"], - ["information graphics", "data presentation architecture"], - ["information graphics", "data visualization"], - ["information graphics", "edugraphic"], - ["information graphics", "graphic design"], - ["information graphics", "graphic image development"], - ["information graphics", "graphic organizer"], - ["information graphics", "information design"], - ["information graphics", "scientific visualization"], - ["information graphics", "statistical graphics"], - ["information graphics", "technical illustration"], - ["information graphics", "isotype (picture language)"], - ["information graphics", "timeline"], - ["information graphics", "visualization (graphic)"], - ["information graphics", "news illustrated"], - ["information graphics", "maestro concept"], - ["information graphics", "family tree"], - ["row (database)", "column (database)"], - ["table (database)", "relation (database)"], - ["table (database)", "row (database)"], - ["table (database)", "column (database)"], - ["table (database)", "table (information)"], - ["html element", "html attribute"], - ["html element", "html"], - ["tensor", "array data type"], - ["tensor", "cartesian tensor"], - ["tensor", "fibre bundle"], - ["tensor", "multilinear subspace learning"], - ["tensor", "one-form"], - ["tensor", "tensor product of modules"], - ["tensor", "application of tensor theory in engineering"], - ["tensor", "continuum mechanics"], - ["tensor", "covariant derivative"], - ["tensor", "curvature"], - ["tensor", "diffusion mri"], - ["tensor", "einstein field equations"], - ["tensor", "fluid mechanics"], - ["tensor", "gravity"], - ["tensor", "riemannian geometry"], - ["tensor", "structure tensor"], - ["tensor", "tensor decomposition"], - ["tensor", "tensor derivative"], - ["tensor", "tensor software"], - ["dependent and independent variables", "abscissa and ordinate"], - ["dependent and independent variables", "blocking (statistics)"], - ["dependent and independent variables", "latent variable"], - ["dependent and independent variables", "observable variable"], - ["misleading graph", "chartjunk"], - ["misleading graph", "impression management"], - ["misleading graph", "misuse of statistics"], - ["misleading graph", "simpson's paradox"], - ["misleading graph", "how to lie with statistics"], - ["comparison of research networking tools and research profiling systems", "social networking service"], - ["social network", "bibliography of sociology"], - ["social network", "blockmodeling"], - ["social network", "network theory"], - ["social network", "network science"], - ["social network", "social network analysis"], - ["social network", "social networking service"], - ["social network", "social web"], - ["data model", "core architecture data model"], - ["data model", "data dictionary"], - ["data modeling", "architectural pattern (computer science)"], - ["data modeling", "comparison of data modeling tools"], - ["data modeling", "data (computing)"], - ["data modeling", "data dictionary"], - ["data modeling", "enterprise data modeling"], - ["data modeling", "entity data model"], - ["data modeling", "information management"], - ["data modeling", "metadata modeling"], - ["data modeling", "three schema approach"], - ["data modeling", "zachman framework"], - ["entity-relationship model", "associative entity"], - ["entity-relationship model", "concept map"], - ["entity-relationship model", "database design"], - ["entity-relationship model", "data structure diagram"], - ["entity-relationship model", "enhanced entity–relationship model"], - ["entity-relationship model", "enterprise architecture framework"], - ["entity-relationship model", "entity data model"], - ["entity-relationship model", "fundamental modeling concepts"], - ["entity-relationship model", "comparison of data modeling tools"], - ["entity-relationship model", "ontology (information science)"], - ["entity-relationship model", "object-role modeling"], - ["entity-relationship model", "three schema approach"], - ["entity-relationship model", "structured entity relationship model"], - ["entity-relationship model", "schema-agnostic databases"], - ["information systems", "information management"], - ["information systems", "human–computer interaction"], - ["information systems", "informatics"], - ["information systems", "bioinformatics"], - ["information systems", "health informatics"], - ["information systems", "cheminformatics"], - ["information systems", "geoinformatics"], - ["information systems", "information science"], - ["information systems", "web science"], - ["information systems", "management information system"], - ["information systems", "library science"], - ["information systems", "data modeling"], - ["information systems", "database"], - ["information systems", "metadata"], - ["information systems", "semantic translation"], - ["information systems", "three schema approach"], - ["information systems", "enterprise information system"], - ["view model", "enterprise architecture framework"], - ["view model", "organizational architecture"], - ["view model", "zachman framework"], - ["view model", "ontology (information science)"], - ["view model", "knowledge acquisition"], - ["conceptual framework", "analogy"], - ["conceptual framework", "inquiry"], - ["conceptual framework", "conceptual model"], - ["conceptual graphs", "alphabet of human thought"], - ["conceptual graphs", "chunking (psychology)"], - ["conceptual graphs", "resource description framework"], - ["conceptual graphs", "sparql"], - ["conceptual graphs", "semantic network"], - ["object-relationship modelling", "comparison of object–relational mapping software"], - ["object-relationship modelling", "autofetch"], - ["object-relationship modelling", "common object request broker architecture"], - ["object-relationship modelling", "object database"], - ["object-relationship modelling", "object persistence"], - ["object-relationship modelling", "object–relational database"], - ["object-relationship modelling", "object–relational impedance mismatch"], - ["object-relationship modelling", "relational model"], - ["object-relationship modelling", "sql"], - ["object-relationship modelling", "java data objects"], - ["object-relationship modelling", "service data objects"], - ["object-relationship modelling", "entity framework"], - ["object-relationship modelling", "active record pattern"], - ["object-relationship modelling", "data mapper pattern"], - ["object-relationship modelling", "single table inheritance"], - ["logical data model", "dodaf"], - ["logical data model", "core architecture data model"], - ["logical data model", "database design"], - ["logical data model", "entity-relationship model"], - ["logical data model", "database schema"], - ["logical data model", "object-role modeling"], - ["physical data model", "database schema"], - ["physical data model", "logical data model"], - ["enterprise architecture framework", "architectural pattern (computer science)"], - ["enterprise architecture framework", "enterprise architecture"], - ["enterprise architecture framework", "enterprise architecture planning"], - ["cartesian product", "binary relation"], - ["logic of relatives", "charles sanders peirce's type–token distinction"], - ["logic of relatives", "continuous predicate"], - ["logic of relatives", "entitative graph"], - ["logic of relatives", "howland will forgery trial"], - ["logic of relatives", "hypostatic abstraction"], - ["logic of relatives", "laws of form"], - ["logic of relatives", "logic of information"], - ["logic of relatives", "logical machine"], - ["logic of relatives", "logical matrix"], - ["logic of relatives", "mathematical psychology"], - ["logic of relatives", "peirce triangle"], - ["logic of relatives", "peircean realism"], - ["logic of relatives", "phaneron"], - ["logic of relatives", "pragmatics"], - ["logic of relatives", "relation algebra"], - ["logic of relatives", "truth table"], - ["logic of relatives", "oliver wendell holmes jr."], - ["logic of relatives", "george herbert mead"], - ["projection (relational algebra)", "projection (set theory)"], - ["projection (set theory)", "cartesian product"], - ["projection (set theory)", "projection (relational algebra)"], - ["projection (set theory)", "projection (mathematics)"], - ["projection (set theory)", "relation (mathematics)"], - ["relation (mathematics)", "incidence structure"], - ["relation (mathematics)", "logic of relatives"], - ["relation (mathematics)", "order theory"], - ["relation algebra", "algebraic logic"], - ["relation algebra", "binary relation"], - ["relation algebra", "cartesian product"], - ["relation algebra", "extension (predicate logic)"], - ["relation algebra", "logic of relatives"], - ["relation algebra", "logical matrix"], - ["relation algebra", "relation (mathematics)"], - ["relation algebra", "relation construction"], - ["relation algebra", "relational calculus"], - ["relation algebra", "relational algebra"], - ["relation algebra", "spatial-temporal reasoning"], - ["relation algebra", "theory of relations"], - ["relation algebra", "triadic relation"], - ["relation construction", "projection (mathematics)"], - ["relation construction", "relation (mathematics)"], - ["relation construction", "relation composition"], - ["relational database", "sql"], - ["relational database", "object database"], - ["relational database", "online analytical processing"], - ["relational database", "data warehouse"], - ["relational database", "star schema"], - ["relational database", "snowflake schema"], - ["relational database", "comparison of relational database management systems"], - ["theory of relations", "incidence structure"], - ["theory of relations", "hypergraph"], - ["theory of relations", "logic of relatives"], - ["theory of relations", "logical matrix"], - ["theory of relations", "projection (set theory)"], - ["theory of relations", "relation algebra"], - ["theory of relations", "relational algebra"], - ["theory of relations", "relational model"], - ["tuple relational calculus", "relational algebra"], - ["tuple relational calculus", "relational calculus"], - ["tuple relational calculus", "domain relational calculus"], - ["sql", "object database"], - ["sql", "comparison of relational database management systems"], - ["sql", "comparison of object–relational database management systems"], - ["sql", "d (data language specification)"], - ["sql", "online analytical processing"], - ["sql", "data warehouse"], - ["sql", "hierarchical database model"], - ["sql", "star schema"], - ["sql", "snowflake schema"], - ["ontology modularization", "ontology double articulation"], - ["business process model and notation", "drakon"], - ["business process model and notation", "bpel"], - ["business process model and notation", "business process management"], - ["business process model and notation", "business process modeling"], - ["business process model and notation", "comparison of business process model and notation modeling tools"], - ["business process model and notation", "decision model and notation"], - ["business process model and notation", "cmmn"], - ["business process model and notation", "process driven messaging service"], - ["business process model and notation", "event-driven process chain"], - ["business process model and notation", "function model"], - ["business process model and notation", "functional software architecture"], - ["business process model and notation", "workflow"], - ["business process model and notation", "workflow patterns"], - ["business process model and notation", "service component architecture"], - ["business process model and notation", "xpdl"], - ["business process model and notation", "yawl"], - ["information cascade", "groupthink"], - ["information cascade", "agent-based computational economics"], - ["niam", "concept map"], - ["niam", "conceptual schema"], - ["niam", "information flow diagram"], - ["niam", "ontology double articulation"], - ["niam", "ontology engineering"], - ["niam", "relational algebra"], - ["niam", "three schema approach"], - ["system context diagram", "data flow diagram"], - ["system context diagram", "information flow diagram"], - ["system context diagram", "event partitioning"], - ["system context diagram", "computer network diagram"], - ["system context diagram", "requirements analysis"], - ["system context diagram", "software development process"], - ["system context diagram", "systems analysis"], - ["data flow diagram", "activity diagram"], - ["data flow diagram", "business process model and notation"], - ["data flow diagram", "control-flow diagram"], - ["data flow diagram", "data island"], - ["data flow diagram", "dataflow"], - ["data flow diagram", "directed acyclic graph"], - ["data flow diagram", "drakon"], - ["data flow diagram", "functional flow block diagram"], - ["data flow diagram", "function model"], - ["data flow diagram", "idef0"], - ["data flow diagram", "pipeline (software)"], - ["data flow diagram", "structured analysis and design technique"], - ["data flow diagram", "structure chart"], - ["data flow diagram", "system context diagram"], - ["data flow diagram", "value-stream mapping"], - ["data flow diagram", "workflow"], - ["software development process", "systems development life cycle"], - ["software development process", "computer-aided software engineering"], - ["software development process", "project management"], - ["software development process", "software development"], - ["business process management", "business intelligence"], - ["business process management", "business process automation"], - ["business process management", "comparison of business integration software"], - ["business process management", "enterprise planning systems"], - ["business process management", "integrated business planning"], - ["business process management", "process architecture"], - ["business process management", "total quality management"], - ["business process modeling", "business reference model"], - ["business process modeling", "function model"], - ["business process modeling", "organizational chart"], - ["business process modeling", "data model"], - ["business process modeling", "business analysis"], - ["business process modeling", "business process reengineering"], - ["business process modeling", "business process"], - ["business process modeling", "business process management"], - ["business process modeling", "management"], - ["business process modeling", "holism"], - ["event-driven process chain", "drakon"], - ["event-driven process chain", "flowchart"], - ["event-driven process chain", "petri net"], - ["event-driven process chain", "process mining"], - ["event-driven process chain", "workflow"], - ["event-driven process chain", "event chain diagram"], - ["function model", "business process modeling"], - ["function model", "data model"], - ["function model", "functional software architecture"], - ["function model", "unified modeling language"], - ["function model", "view model"], - ["workflow", "business process automation"], - ["workflow", "business process management"], - ["workflow", "business process modeling"], - ["workflow", "computer-supported collaboration"], - ["workflow", "drakon"], - ["workflow", "enterprise content management"], - ["workflow", "process architecture"], - ["workflow", "process-driven application"], - ["workflow", "workflow engine"], - ["workflow", "business process reengineering"], - ["business semantics management", "business process management"], - ["business semantics management", "conceptual schema"], - ["business semantics management", "data integration"], - ["business semantics management", "enterprise information integration"], - ["business semantics management", "master data management"], - ["business semantics management", "ontology"], - ["business semantics management", "ontology double articulation"], - ["semantic computing", "computational semantics"], - ["semantic computing", "semantic compression"], - ["semantic computing", "semantic technology"], - ["data integration", "business semantics management"], - ["data integration", "change data capture"], - ["data integration", "core data integration"], - ["data integration", "customer data integration"], - ["data integration", "cyberinfrastructure"], - ["data integration", "data blending"], - ["data integration", "data curation"], - ["data integration", "data fusion"], - ["data integration", "data mapping"], - ["data integration", "data wrangling"], - ["data integration", "database model"], - ["data integration", "dataspaces"], - ["data integration", "edge data integration"], - ["data integration", "enterprise application integration"], - ["data integration", "enterprise architecture framework"], - ["data integration", "enterprise information integration"], - ["data integration", "enterprise integration"], - ["data integration", "geodi"], - ["data integration", "information integration"], - ["data integration", "information server"], - ["data integration", "information silo"], - ["data integration", "integration competency center"], - ["data integration", "integration consortium"], - ["data integration", "jxta"], - ["data integration", "master data management"], - ["data integration", "object-relational mapping"], - ["data integration", "open text"], - ["data integration", "schema matching"], - ["data integration", "three schema approach"], - ["data integration", "udef"], - ["data integration", "web data integration"], - ["data integration", "web service"], - ["dataspaces", "data mapping"], - ["dataspaces", "data integration"], - ["dataspaces", "semantic integration"], - ["dataspaces", "information integration"], - ["enterprise integration", "architecture of interoperable information systems"], - ["enterprise integration", "integration consortium"], - ["enterprise integration", "configuration management"], - ["enterprise integration", "data integration"], - ["enterprise integration", "enterprise application integration"], - ["enterprise integration", "enterprise information integration"], - ["enterprise integration", "enterprise integration patterns"], - ["enterprise integration", "generalised enterprise reference architecture and methodology"], - ["enterprise integration", "semantic integration"], - ["enterprise integration", "semantic unification"], - ["charles sanders peirce's type–token distinction", "class (philosophy)"], - ["charles sanders peirce's type–token distinction", "type theory"], - ["hypostatic abstraction", "abstraction"], - ["hypostatic abstraction", "analogy"], - ["hypostatic abstraction", "category theory"], - ["hypostatic abstraction", "continuous predicate"], - ["peircean realism", "applied ethics"], - ["dodaf", "ideas group"], - ["dodaf", "modaf meta-model"], - ["project management", "agile construction"], - ["project management", "architectural engineering"], - ["project management", "construction management"], - ["project management", "cost engineering"], - ["project management", "facilitation (business)"], - ["project management", "industrial engineering"], - ["project management", "project production management"], - ["project management", "project management software"], - ["project management", "project portfolio management"], - ["project management", "systems engineering"], - ["project management", "collaborative project management"], - ["project management", "decision-making"], - ["project management", "game theory"], - ["project management", "earned value management"], - ["project management", "kanban (development)"], - ["project management", "operations research"], - ["project management", "process architecture"], - ["project management", "program management"], - ["project management", "project accounting"], - ["project management", "project governance"], - ["project management", "project management simulation"], - ["project management", "software development process"], - ["project management", "systems development life cycle"], - ["project management", "comparison of project management software"], - ["business process", "business analysis"], - ["business process", "business process automation"], - ["business process", "business process mapping"], - ["three circles model", "venn diagram"], - ["systems engineering", "arcadia (engineering)"], - ["systems engineering", "control engineering"], - ["systems engineering", "design review (u.s. government)"], - ["systems engineering", "engineering management"], - ["systems engineering", "enterprise systems engineering"], - ["systems engineering", "industrial engineering"], - ["systems engineering", "interdisciplinarity"], - ["systems engineering", "management cybernetics"], - ["systems engineering", "model-based systems engineering"], - ["systems engineering", "operations management"], - ["systems engineering", "structured systems analysis and design method"], - ["systems engineering", "system of systems engineering"], - ["systems engineering", "system accident"], - ["systems engineering", "systems architecture"], - ["systems engineering", "systems development life cycle"], - ["systems engineering", "systems thinking"], - ["systems engineering", "theory of constraints"], - ["systems engineering", "value-stream mapping"], - ["systems engineering", "system information modelling"], - ["industrial engineering", "industrial revolution"], - ["systems architecture", "arcadia (engineering)"], - ["systems architecture", "architectural pattern (computer science)"], - ["systems architecture", "department of defense architecture framework"], - ["systems architecture", "enterprise architecture framework"], - ["systems architecture", "enterprise information security architecture"], - ["systems architecture", "process architecture"], - ["systems architecture", "requirements analysis"], - ["systems architecture", "software architecture"], - ["systems architecture", "software engineering"], - ["systems architecture", "systems analysis"], - ["systems architecture", "systems engineering"], - ["systems development life cycle", "application lifecycle management"], - ["systems development life cycle", "decision cycle"], - ["systems development life cycle", "ipo model"], - ["systems development life cycle", "software development methodologies"], - ["value-stream mapping", "business process mapping"], - ["value-stream mapping", "lean manufacturing"], - ["value-stream mapping", "value-stream-mapping software"], - ["value-stream mapping", "value chain"], - ["value-stream mapping", "value stream"], - ["topincs", "topic maps"], - ["topincs", "rapid application development"], - ["topincs", "metamodeling"], - ["unified modeling language", "applications of uml"], - ["unified modeling language", "business process model and notation"], - ["unified modeling language", "c4 model (software)"], - ["unified modeling language", "model-based testing"], - ["unified modeling language", "model-driven engineering"], - ["unified modeling language", "object oriented role analysis and modeling"], - ["unified modeling language", "systems modeling language"], - ["unified modeling language", "dodaf"], - ["unified modeling language", "modaf meta-model"], - ["applications of uml", "unified modeling language"], - ["c4 model (software)", "software architecture"], - ["model-based testing", "domain-specific language"], - ["model-based testing", "domain-specific modeling"], - ["model-based testing", "model-driven architecture"], - ["model-based testing", "model-driven engineering"], - ["model-driven engineering", "application lifecycle management"], - ["model-driven engineering", "business process model and notation"], - ["model-driven engineering", "business-driven development"], - ["model-driven engineering", "domain-specific language"], - ["model-driven engineering", "domain-specific modeling"], - ["model-driven engineering", "language-oriented programming"], - ["model-driven engineering", "qvt"], - ["model-driven engineering", "model-based testing"], - ["model-driven engineering", "model-based systems engineering"], - ["object oriented role analysis and modeling", "view model"], - ["object oriented role analysis and modeling", "unified modeling language"], - ["systems modeling language", "object process methodology"], - ["rapid application development", "flow-based programming"], - ["rapid application development", "lean software development"], - ["metamodeling", "business reference model"], - ["metamodeling", "data governance"], - ["metamodeling", "model-driven engineering"], - ["metamodeling", "model-driven architecture"], - ["metamodeling", "domain-specific modeling"], - ["metamodeling", "metadata"], - ["metamodeling", "computer-aided software engineering"], - ["metamodeling", "method engineering"], - ["metamodeling", "modaf meta-model"], - ["metamodeling", "qvt"], - ["metamodeling", "object process methodology"], - ["metamodeling", "requirements analysis"], - ["metamodeling", "space mapping"], - ["udef", "data integration"], - ["udef", "iso/iec 11179"], - ["udef", "national information exchange model"], - ["udef", "metadata"], - ["udef", "semantic web"], - ["udef", "representation term"], - ["udef", "controlled vocabulary"], - ["change data capture", "slowly changing dimension"], - ["core data integration", "data integration"], - ["core data integration", "edge data integration"], - ["customer data integration", "business semantics management"], - ["customer data integration", "change data capture"], - ["customer data integration", "core data integration"], - ["customer data integration", "cyberinfrastructure"], - ["customer data integration", "data blending"], - ["customer data integration", "data curation"], - ["customer data integration", "data fusion"], - ["customer data integration", "data mapping"], - ["customer data integration", "data wrangling"], - ["customer data integration", "database model"], - ["customer data integration", "dataspaces"], - ["customer data integration", "edge data integration"], - ["customer data integration", "enterprise application integration"], - ["customer data integration", "enterprise architecture framework"], - ["customer data integration", "enterprise information integration"], - ["customer data integration", "enterprise integration"], - ["customer data integration", "geodi"], - ["customer data integration", "information integration"], - ["customer data integration", "information server"], - ["customer data integration", "information silo"], - ["customer data integration", "integration competency center"], - ["customer data integration", "integration consortium"], - ["customer data integration", "jxta"], - ["customer data integration", "master data management"], - ["customer data integration", "object-relational mapping"], - ["customer data integration", "open text"], - ["customer data integration", "schema matching"], - ["customer data integration", "three schema approach"], - ["customer data integration", "udef"], - ["customer data integration", "web data integration"], - ["customer data integration", "web service"], - ["data blending", "data preparation"], - ["data blending", "data fusion"], - ["data blending", "data wrangling"], - ["data blending", "data cleansing"], - ["data blending", "data editing"], - ["data blending", "data curation"], - ["data curation", "data wrangling"], - ["data fusion", "data assimilation"], - ["data fusion", "image fusion"], - ["data fusion", "information integration"], - ["data fusion", "sensor fusion"], - ["data mapping", "data integration"], - ["data mapping", "data wrangling"], - ["data mapping", "iso/iec 11179"], - ["data mapping", "metadata"], - ["data mapping", "schema matching"], - ["data mapping", "semantic heterogeneity"], - ["data mapping", "semantic mapper"], - ["data mapping", "semantic translation"], - ["data mapping", "semantic web"], - ["data mapping", "semantics"], - ["data wrangling", "data preparation"], - ["database model", "database design"], - ["edge data integration", "core data integration"], - ["edge data integration", "web 2.0"], - ["enterprise application integration", "enterprise architecture framework"], - ["enterprise application integration", "business semantics management"], - ["enterprise application integration", "data integration"], - ["enterprise application integration", "enterprise information integration"], - ["enterprise application integration", "enterprise integration"], - ["enterprise application integration", "enterprise integration patterns"], - ["enterprise application integration", "generalised enterprise reference architecture and methodology"], - ["enterprise application integration", "integration competency center"], - ["enterprise application integration", "health level 7"], - ["enterprise information integration", "business intelligence 2.0"], - ["enterprise information integration", "data warehouse"], - ["enterprise information integration", "enterprise integration"], - ["enterprise information integration", "federated database system"], - ["enterprise information integration", "resource description framework"], - ["enterprise information integration", "semantic heterogeneity"], - ["enterprise information integration", "semantic integration"], - ["enterprise information integration", "semantic web"], - ["enterprise information integration", "web 2.0"], - ["information integration", "data fusion"], - ["information integration", "sensor fusion"], - ["information integration", "data integration"], - ["information integration", "image fusion"], - ["jxta", "peer-to-peer"], - ["master data management", "business semantics management"], - ["master data management", "customer data integration"], - ["master data management", "data governance"], - ["master data management", "data integration"], - ["master data management", "data visualization"], - ["master data management", "enterprise information integration"], - ["master data management", "information management"], - ["master data management", "linked data"], - ["master data management", "record linkage"], - ["master data management", "semantic web"], - ["master data management", "web data integration"], - ["object-relational mapping", "comparison of object–relational mapping software"], - ["object-relational mapping", "autofetch"], - ["object-relational mapping", "common object request broker architecture"], - ["object-relational mapping", "object database"], - ["object-relational mapping", "object persistence"], - ["object-relational mapping", "object–relational database"], - ["object-relational mapping", "object–relational impedance mismatch"], - ["object-relational mapping", "relational model"], - ["object-relational mapping", "sql"], - ["object-relational mapping", "java data objects"], - ["object-relational mapping", "service data objects"], - ["object-relational mapping", "entity framework"], - ["object-relational mapping", "active record pattern"], - ["object-relational mapping", "data mapper pattern"], - ["object-relational mapping", "single table inheritance"], - ["schema matching", "data integration"], - ["schema matching", "dataspaces"], - ["schema matching", "federated database system"], - ["schema matching", "minimal mappings"], - ["schema matching", "ontology alignment"], - ["web service", "middleware"], - ["structured english", "natural language programming"], - ["structured english", "self-documenting code"], - ["structured english", "structured programming"], - ["structured english", "pseudocode"], - ["structured english", "decision tree"], - ["structured english", "decision table"], - ["structured english", "attempto controlled english"], - ["control-flow graph", "abstract syntax tree"], - ["control-flow graph", "flowchart"], - ["control-flow graph", "control-flow diagram"], - ["control-flow graph", "control-flow analysis"], - ["control-flow graph", "data-flow analysis"], - ["control-flow graph", "interval (graph theory)"], - ["control-flow graph", "cyclomatic complexity"], - ["control-flow graph", "compiler construction"], - ["control-flow graph", "intermediate representation"], - ["heat map", "false color"], - ["contingency table", "confusion matrix"], - ["contingency table", "pivot table"], - ["contingency table", "iterative proportional fitting"], - ["contingency table", "multivariate statistics"], - ["contingency table", "olap cube"], - ["abscissa and ordinate", "dependent and independent variables"], - ["abscissa and ordinate", "relation (mathematics)"], - ["abscissa and ordinate", "line chart"], - ["blocking (statistics)", "combinatorial design"], - ["blocking (statistics)", "dependent and independent variables"], - ["blocking (statistics)", "blockmodeling"], - ["latent variable", "dependent and independent variables"], - ["latent variable", "latent variable model"], - ["latent variable", "partial least squares path modeling"], - ["latent variable", "partial least squares regression"], - ["latent variable", "structural equation modeling"], - ["observable variable", "latent variable model"], - ["cartesian tensor", "tensor calculus"], - ["fibre bundle", "principal bundle"], - ["fibre bundle", "vector bundle"], - ["one-form", "tensor"], - ["continuum mechanics", "bernoulli's principle"], - ["continuum mechanics", "tensor calculus"], - ["continuum mechanics", "tensor derivative (continuum mechanics)"], - ["covariant derivative", "affine connection"], - ["covariant derivative", "christoffel symbols"], - ["covariant derivative", "connection (algebraic framework)"], - ["covariant derivative", "connection (mathematics)"], - ["covariant derivative", "connection (vector bundle)"], - ["covariant derivative", "connection form"], - ["covariant derivative", "exterior covariant derivative"], - ["covariant derivative", "gauge covariant derivative"], - ["covariant derivative", "introduction to the mathematics of general relativity"], - ["covariant derivative", "levi-civita connection"], - ["covariant derivative", "parallel transport"], - ["covariant derivative", "ricci calculus"], - ["covariant derivative", "tensor derivative (continuum mechanics)"], - ["curvature", "vector bundle"], - ["curvature", "principal bundle"], - ["curvature", "connection (mathematics)"], - ["curvature", "principle of least action"], - ["diffusion mri", "connectome"], - ["einstein field equations", "ricci calculus"], - ["fluid mechanics", "bernoulli's principle"], - ["riemannian geometry", "systolic geometry"], - ["structure tensor", "tensor"], - ["tensor derivative", "affine connection"], - ["tensor derivative", "christoffel symbols"], - ["tensor derivative", "connection (algebraic framework)"], - ["tensor derivative", "connection (mathematics)"], - ["tensor derivative", "connection (vector bundle)"], - ["tensor derivative", "connection form"], - ["tensor derivative", "exterior covariant derivative"], - ["tensor derivative", "gauge covariant derivative"], - ["tensor derivative", "introduction to the mathematics of general relativity"], - ["tensor derivative", "levi-civita connection"], - ["tensor derivative", "parallel transport"], - ["tensor derivative", "ricci calculus"], - ["tensor derivative", "tensor derivative (continuum mechanics)"], - ["html attribute", "html element"], - ["column-oriented dbms", "data warehouse"], - ["distributed data store", "data store"], - ["distributed data store", "peer-to-peer"], - ["formal methods", "abstract interpretation"], - ["formal methods", "model checking"], - ["formal methods", "software engineering"], - ["functional specification", "benchmarking"], - ["functional specification", "software development process"], - ["functional specification", "specification (technical standard)"], - ["type theory", "domain theory"], - ["type theory", "type (model theory)"], - ["complex event processing", "event stream processing"], - ["complex event processing", "operational intelligence"], - ["complex event processing", "pattern matching"], - ["complex event processing", "real-time business intelligence"], - ["complex event processing", "real-time computing"], - ["pivot table", "business reporting"], - ["pivot table", "comparison of office suites"], - ["pivot table", "comparison of olap servers"], - ["pivot table", "contingency table"], - ["pivot table", "data drilling"], - ["pivot table", "data mining"], - ["pivot table", "data visualization"], - ["pivot table", "data warehouse"], - ["pivot table", "olap cube"], - ["pivot table", "relational algebra"], - ["iterative proportional fitting", "data cleansing"], - ["iterative proportional fitting", "data editing"], - ["olap cube", "business intelligence"], - ["olap cube", "comparison of olap servers"], - ["olap cube", "data mining"], - ["statistical interference", "probabilistic design"], - ["statistical interference", "process capability"], - ["statistical interference", "reliability engineering"], - ["statistical interference", "tolerance (engineering)"], - ["chartjunk", "misleading graph"], - ["chartjunk", "lexicography"], - ["misuse of statistics", "deception"], - ["misuse of statistics", "misleading graph"], - ["misuse of statistics", "post hoc analysis"], - ["misuse of statistics", "simpson's paradox"], - ["anscombe's quartet", "exploratory data analysis"], - ["anscombe's quartet", "goodness of fit"], - ["anscombe's quartet", "simpson's paradox"], - ["anscombe's quartet", "statistical model validation"], - ["data dredging", "aliasing"], - ["data dredging", "misuse of statistics"], - ["data dredging", "overfitting"], - ["data dredging", "post hoc analysis"], - ["data dredging", "predictive analytics"], - ["curve fitting", "estimation theory"], - ["curve fitting", "function approximation"], - ["curve fitting", "goodness of fit"], - ["curve fitting", "levenberg–marquardt algorithm"], - ["curve fitting", "line fitting"], - ["curve fitting", "nonlinear regression"], - ["curve fitting", "overfitting"], - ["curve fitting", "plane curve"], - ["curve fitting", "distribution fitting"], - ["curve fitting", "smoothing"], - ["curve fitting", "interpolating spline"], - ["curve fitting", "smoothing spline"], - ["curve fitting", "time series"], - ["curve fitting", "total least squares"], - ["curve fitting", "trend estimation"], - ["estimation theory", "expectation-maximization algorithm"], - ["estimation theory", "grey box model"], - ["estimation theory", "information theory"], - ["estimation theory", "maximum entropy spectral estimation"], - ["estimation theory", "pareto principle"], - ["estimation theory", "statistical signal processing"], - ["function approximation", "fitness approximation"], - ["function approximation", "radial basis function network"], - ["goodness of fit", "generalized linear model"], - ["goodness of fit", "overfitting"], - ["goodness of fit", "statistical model validation"], - ["line fitting", "regression dilution"], - ["nonlinear regression", "curve fitting"], - ["nonlinear regression", "generalized linear model"], - ["nonlinear regression", "local regression"], - ["overfitting", "curve fitting"], - ["overfitting", "data dredging"], - ["overfitting", "goodness of fit"], - ["overfitting", "model selection"], - ["overfitting", "occam's razor"], - ["distribution fitting", "curve fitting"], - ["distribution fitting", "density estimation"], - ["distribution fitting", "mixture distribution"], - ["distribution fitting", "product distribution"], - ["smoothing", "convolution"], - ["smoothing", "curve fitting"], - ["smoothing", "discretization"], - ["smoothing", "scale space"], - ["smoothing", "smoothing spline"], - ["smoothing", "statistical signal processing"], - ["interpolating spline", "smoothing spline"], - ["trend estimation", "forecasting"], - ["trend estimation", "line fitting"], - ["trend estimation", "regression analysis"], - ["hyperspectral imaging", "sensor fusion"], - ["enhanced metafile format", "postscript"], - ["enhanced metafile format", "vector markup language"], - ["enhanced metafile format", "scalable vector graphics"], - ["ms powerpoint", "powerpoint karaoke"], - ["ms powerpoint", "web-based slideshow"], - ["data binning", "histogram"], - ["data binning", "grouped data"], - ["data binning", "level of measurement"], - ["data binning", "quantization (signal processing)"], - ["data binning", "discretization of continuous features"], - ["kernel density estimation", "kernel (statistics)"], - ["kernel density estimation", "kernel smoothing"], - ["kernel density estimation", "kernel regression"], - ["kernel density estimation", "density estimation"], - ["kernel density estimation", "mean-shift"], - ["kernel density estimation", "scale space"], - ["kernel density estimation", "multivariate kernel density estimation"], - ["kernel density estimation", "variable kernel density estimation"], - ["image histogram", "curve (tonality)"], - ["image histogram", "histogram equalization"], - ["image histogram", "histogram matching"], - ["image histogram", "image editing"], - ["cumulative distribution function", "descriptive statistics"], - ["cumulative distribution function", "distribution fitting"], - ["pareto analysis", "pareto distribution"], - ["pareto analysis", "pareto chart"], - ["pareto analysis", "pareto interpolation"], - ["pareto analysis", "ishikawa diagram"], - ["pareto principle", "1% rule (internet culture)"], - ["pareto principle", "10/90 gap"], - ["pareto principle", "benford's law"], - ["pareto principle", "diminishing returns"], - ["pareto principle", "elephant flow"], - ["pareto principle", "keystone species"], - ["pareto principle", "long tail"], - ["pareto principle", "matthew effect"], - ["pareto principle", "mathematical economics"], - ["pareto principle", "megadiverse countries"], - ["pareto principle", "ninety-ninety rule"], - ["pareto principle", "pareto distribution"], - ["pareto principle", "parkinson's law"], - ["pareto principle", "derek j. de solla price"], - ["pareto principle", "principle of least effort"], - ["pareto principle", "profit risk"], - ["pareto principle", "rank-size distribution"], - ["pareto principle", "sturgeon's law"], - ["pareto principle", "vitality curve"], - ["pareto principle", "wealth concentration"], - ["pareto principle", "zipf's law"], - ["statistical quality control", "distribution-free control chart"], - ["statistical quality control", "process capability index"], - ["statistical quality control", "quality assurance"], - ["statistical quality control", "industrial engineering"], - ["statistical quality control", "anova gauge r&r"], - ["statistical quality control", "stochastic control"], - ["statistical quality control", "electronic design automation"], - ["statistical quality control", "process window index"], - ["statistical quality control", "reliability engineering"], - ["statistical quality control", "six sigma"], - ["statistical quality control", "total quality management"], - ["curve (tonality)", "image histogram"], - ["histogram equalization", "histogram matching"], - ["histogram matching", "histogram equalization"], - ["histogram matching", "image histogram"], - ["image editing", "computer graphics"], - ["image editing", "image processing"], - ["kernel (statistics)", "kernel density estimation"], - ["kernel (statistics)", "kernel smoother"], - ["kernel (statistics)", "density estimation"], - ["kernel (statistics)", "multivariate kernel density estimation"], - ["kernel smoothing", "kernel density estimation"], - ["kernel smoothing", "local regression"], - ["kernel smoothing", "kernel regression"], - ["kernel regression", "kernel smoother"], - ["kernel regression", "local regression"], - ["mean-shift", "optics algorithm"], - ["mean-shift", "kernel density estimation"], - ["mean-shift", "kernel (statistics)"], - ["multivariate kernel density estimation", "kernel density estimation"], - ["multivariate kernel density estimation", "variable kernel density estimation"], - ["generative model", "graphical model"], - ["order statistic", "box plot"], - ["order statistic", "rank-size distribution"], - ["order statistic", "quantile"], - ["order statistic", "descriptive statistics"], - ["probability distribution fitting", "curve fitting"], - ["probability distribution fitting", "density estimation"], - ["probability distribution fitting", "mixture distribution"], - ["probability distribution fitting", "product distribution"], - ["grouped data", "aggregate data"], - ["grouped data", "data binning"], - ["grouped data", "level of measurement"], - ["grouped data", "discretization of continuous features"], - ["level of measurement", "set theory"], - ["quantization (signal processing)", "data binning"], - ["quantization (signal processing)", "discretization"], - ["quantization (signal processing)", "quantile"], - ["quantization (signal processing)", "regression dilution"], - ["discretization of continuous features", "density estimation"], - ["rank-size distribution", "pareto principle"], - ["rank-size distribution", "long tail"], - ["process capability index", "process (engineering)"], - ["process capability index", "process capability"], - ["quality assurance", "quality management system"], - ["quality assurance", "software testing"], - ["quality assurance", "verification and validation"], - ["stochastic control", "stochastic process"], - ["stochastic control", "control theory"], - ["electronic design automation", "computer-aided design"], - ["total quality management", "capability maturity model integration"], - ["total quality management", "lean manufacturing"], - ["total quality management", "malcolm baldrige national quality award"], - ["total quality management", "people capability maturity model"], - ["total quality management", "zero defects"], - ["1% rule (internet culture)", "netocracy"], - ["1% rule (internet culture)", "sturgeon's law"], - ["10/90 gap", "pareto principle"], - ["10/90 gap", "economic inequality"], - ["benford's law", "predictive analytics"], - ["benford's law", "zipf's law"], - ["diminishing returns", "liebig's law of the minimum"], - ["diminishing returns", "pareto efficiency"], - ["diminishing returns", "teamwork"], - ["elephant flow", "pareto principle"], - ["long tail", "swarm intelligence"], - ["matthew effect", "attention inequality"], - ["matthew effect", "lindy effect"], - ["matthew effect", "metcalfe's law"], - ["matthew effect", "pareto distribution"], - ["matthew effect", "positive feedback"], - ["matthew effect", "preferential attachment"], - ["matthew effect", "social network analysis"], - ["matthew effect", "virtuous circle and vicious circle"], - ["matthew effect", "wealth concentration"], - ["mathematical economics", "econophysics"], - ["ninety-ninety rule", "hofstadter's law"], - ["ninety-ninety rule", "lindy effect"], - ["ninety-ninety rule", "pareto principle"], - ["pareto distribution", "bradford's law"], - ["pareto distribution", "matthew effect"], - ["pareto distribution", "pareto analysis"], - ["pareto distribution", "pareto efficiency"], - ["pareto distribution", "pareto interpolation"], - ["pareto distribution", "sturgeon's law"], - ["pareto distribution", "zipf's law"], - ["parkinson's law", "hofstadter's law"], - ["principle of least effort", "principle of least action"], - ["principle of least effort", "pareto principle"], - ["principle of least effort", "occam's razor"], - ["principle of least effort", "preferential attachment"], - ["profit risk", "pareto principle"], - ["profit risk", "risk management"], - ["sturgeon's law", "pareto distribution"], - ["sturgeon's law", "pareto principle"], - ["wealth concentration", "economic inequality"], - ["zipf's law", "1% rule (internet culture)"], - ["zipf's law", "benford's law"], - ["zipf's law", "bradford's law"], - ["zipf's law", "pareto distribution"], - ["zipf's law", "pareto principle"], - ["zipf's law", "principle of least effort"], - ["zipf's law", "rank-size distribution"], - ["zipf's law", "long tail"], - ["common cause and special cause", "corrective and preventive action"], - ["common cause and special cause", "nuclear safety"], - ["common cause and special cause", "probabilistic risk assessment"], - ["common cause and special cause", "statistical process control"], - ["w. edwards deming", "analytic and enumerative statistical studies"], - ["w. edwards deming", "common cause and special cause"], - ["w. edwards deming", "continual improvement process"], - ["w. edwards deming", "epistemology"], - ["w. edwards deming", "joseph m. juran"], - ["w. edwards deming", "kaizen"], - ["w. edwards deming", "maestro concept"], - ["w. edwards deming", "shewhart cycle"], - ["w. edwards deming", "toyota production system"], - ["process capability", "process (engineering)"], - ["process capability", "control chart"], - ["process capability", "corrective and preventative action"], - ["process capability", "kurtosis"], - ["process capability", "normal distribution"], - ["process capability", "six sigma"], - ["process capability", "statistical interference"], - ["process capability", "statistical process control"], - ["process capability", "tolerance (engineering)"], - ["statistical process control", "distribution-free control chart"], - ["statistical process control", "process capability index"], - ["statistical process control", "quality assurance"], - ["statistical process control", "industrial engineering"], - ["statistical process control", "anova gauge r&r"], - ["statistical process control", "stochastic control"], - ["statistical process control", "electronic design automation"], - ["statistical process control", "process window index"], - ["statistical process control", "reliability engineering"], - ["statistical process control", "six sigma"], - ["statistical process control", "total quality management"], - ["vector markup language", "scalable vector graphics"], - ["scalable vector graphics", "computer graphics"], - ["bar graph", "mw:extension:easytimeline"], - ["bar graph", "enhanced metafile format"], - ["bar graph", "ms powerpoint"], - ["bar graph", "histogram"], - ["bar graph", "misleading graph"], - ["float (project management)", "critical path method"], - ["gantt chart", "critical path method"], - ["gantt chart", "event chain methodology"], - ["gantt chart", "float (project management)"], - ["gantt chart", "program evaluation and review technique"], - ["gantt chart", "event chain diagram"], - ["project planning", "cost overrun"], - ["project planning", "enterprise resource planning"], - ["project planning", "megaproject"], - ["project planning", "operations research"], - ["project planning", "prince2"], - ["project planning", "project management institute"], - ["project planning", "project plan"], - ["project planning", "project stakeholders"], - ["project planning", "scope creep"], - ["program evaluation and review technique", "activity diagram"], - ["program evaluation and review technique", "arrow diagramming method"], - ["program evaluation and review technique", "critical chain project management"], - ["program evaluation and review technique", "critical path method"], - ["program evaluation and review technique", "float (project management)"], - ["program evaluation and review technique", "gantt chart"], - ["program evaluation and review technique", "precedence diagram method"], - ["program evaluation and review technique", "project network"], - ["program evaluation and review technique", "project management"], - ["program evaluation and review technique", "project planning"], - ["program evaluation and review technique", "triangular distribution"], - ["program evaluation and review technique", "prince2"], - ["activity diagram", "business process modeling notation"], - ["activity diagram", "control-flow graph"], - ["activity diagram", "data flow diagram"], - ["activity diagram", "drakon"], - ["activity diagram", "event-driven process chain"], - ["activity diagram", "pseudocode"], - ["activity diagram", "state diagram"], - ["activity diagram", "flowchart"], - ["arrow diagramming method", "precedence diagram method"], - ["arrow diagramming method", "program evaluation and review technique"], - ["critical chain project management", "theory of constraints"], - ["critical chain project management", "event chain methodology"], - ["critical path method", "gantt chart"], - ["critical path method", "program evaluation and review technique"], - ["critical path method", "critical chain project management"], - ["critical path method", "liebig's law of the minimum"], - ["critical path method", "project management"], - ["critical path method", "project planning"], - ["critical path method", "work breakdown structure"], - ["project network", "bar chart"], - ["project network", "float (project management)"], - ["project network", "gantt chart"], - ["project network", "project management"], - ["project network", "project planning"], - ["project network", "program evaluation and review technique"], - ["triangular distribution", "three-point estimation"], - ["triangular distribution", "five-number summary"], - ["triangular distribution", "seven-number summary"], - ["triangular distribution", "bates distribution"], - ["prince2", "comparison of project-management software"], - ["prince2", "gantt chart"], - ["prince2", "work breakdown structure"], - ["enterprise resource planning", "business process management"], - ["megaproject", "reference class forecasting"], - ["megaproject", "optimism bias"], - ["project plan", "project planning"], - ["scope creep", "anti-pattern"], - ["scope creep", "cost overrun"], - ["architectural engineering", "building officials"], - ["architectural engineering", "civil engineering"], - ["architectural engineering", "construction engineering"], - ["architectural engineering", "international building code"], - ["construction management", "architectural engineering"], - ["construction management", "building officials"], - ["construction management", "civil engineering"], - ["construction management", "construction engineering"], - ["construction management", "construction estimating software"], - ["construction management", "cost overrun"], - ["construction management", "cost engineering"], - ["construction management", "international building code"], - ["construction management", "work breakdown structure"], - ["cost engineering", "construction management"], - ["cost engineering", "construction estimating software"], - ["cost engineering", "cost overrun"], - ["cost engineering", "optimism bias"], - ["cost engineering", "project management"], - ["cost engineering", "reference class forecasting"], - ["project management software", "calendaring software"], - ["project management software", "comparison of project-management software"], - ["project management software", "comparison of development estimation software"], - ["project management software", "construction collaboration technology"], - ["project management software", "program evaluation and review technique"], - ["project management software", "project accounting"], - ["project management software", "project management simulation"], - ["project management software", "project planning"], - ["project management software", "project portfolio management"], - ["project management software", "workflow management system"], - ["project portfolio management", "comparison of project-management software"], - ["project portfolio management", "project management"], - ["project portfolio management", "project management software"], - ["project portfolio management", "project management simulation"], - ["collaborative project management", "project management"], - ["collaborative project management", "learning agenda"], - ["collaborative project management", "teamwork"], - ["earned value management", "critical chain project management"], - ["kanban (development)", "lean software development"], - ["process architecture", "complex system"], - ["process architecture", "enterprise information security architecture"], - ["process architecture", "flowchart"], - ["process architecture", "information architecture"], - ["process architecture", "method engineering"], - ["process architecture", "petri net"], - ["process architecture", "process calculus"], - ["process architecture", "process engineering"], - ["process architecture", "process management"], - ["process architecture", "process modeling"], - ["process architecture", "process theory"], - ["process architecture", "system of systems"], - ["process architecture", "systems architecture"], - ["process architecture", "systems theory"], - ["process architecture", "workflow"], - ["program management", "cost overrun"], - ["program management", "project management institute"], - ["program management", "systems engineering"], - ["program management", "comparison of project management software"], - ["project accounting", "project management"], - ["project accounting", "project management software"], - ["project accounting", "project manager"], - ["project governance", "cost overrun"], - ["project management simulation", "project management"], - ["project management simulation", "project manager"], - ["comparison of project management software", "kanban (development)"], - ["comparison of project management software", "project management"], - ["comparison of project management software", "project planning"], - ["comparison of project management software", "comparison of development estimation software"], - ["comparison of project management software", "comparison of crm systems"], - ["event chain methodology", "program evaluation and review technique"], - ["event chain methodology", "project management"], - ["event chain methodology", "project planning"], - ["event chain methodology", "work breakdown structure"], - ["event chain diagram", "gantt chart"], - ["event chain diagram", "run chart"], - ["enterprise information security architecture", "enterprise architecture"], - ["enterprise information security architecture", "enterprise architecture planning"], - ["process engineering", "industrial engineering"], - ["process modeling", "model selection"], - ["process modeling", "process architecture"], - ["process modeling", "process calculus"], - ["process modeling", "process ontology"], - ["process theory", "process architecture"], - ["system of systems", "model-based systems engineering"], - ["system of systems", "enterprise systems engineering"], - ["system of systems", "complex adaptive system"], - ["system of systems", "systems architecture"], - ["system of systems", "process architecture"], - ["system of systems", "software architecture"], - ["system of systems", "enterprise architecture"], - ["system of systems", "department of defense architecture framework"], - ["three-point estimation", "five-number summary"], - ["three-point estimation", "seven-number summary"], - ["three-point estimation", "program evaluation and review technique"], - ["five-number summary", "seven-number summary"], - ["five-number summary", "three-point estimation"], - ["five-number summary", "box plot"], - ["seven-number summary", "three-point estimation"], - ["seven-number summary", "stanine"], - ["business process modeling notation", "drakon"], - ["business process modeling notation", "bpel"], - ["business process modeling notation", "business process management"], - ["business process modeling notation", "business process modeling"], - ["business process modeling notation", "comparison of business process model and notation modeling tools"], - ["business process modeling notation", "decision model and notation"], - ["business process modeling notation", "cmmn"], - ["business process modeling notation", "process driven messaging service"], - ["business process modeling notation", "event-driven process chain"], - ["business process modeling notation", "function model"], - ["business process modeling notation", "functional software architecture"], - ["business process modeling notation", "workflow"], - ["business process modeling notation", "workflow patterns"], - ["business process modeling notation", "service component architecture"], - ["business process modeling notation", "xpdl"], - ["business process modeling notation", "yawl"], - ["pseudocode", "drakon"], - ["pseudocode", "flowchart"], - ["pseudocode", "literate programming"], - ["pseudocode", "program design language"], - ["pseudocode", "short code"], - ["pseudocode", "structured english"], - ["state diagram", "david harel"], - ["state diagram", "drakon"], - ["state diagram", "scxml"], - ["state diagram", "uml state machine"], - ["capability maturity model integration", "capability immaturity model"], - ["capability maturity model integration", "capability maturity model"], - ["capability maturity model integration", "people capability maturity model"], - ["lean manufacturing", "a3 problem solving"], - ["lean manufacturing", "industrial engineering"], - ["lean manufacturing", "ishikawa diagram"], - ["lean manufacturing", "operations management"], - ["lean manufacturing", "ovsiankina effect"], - ["lean manufacturing", "poka-yoke"], - ["lean manufacturing", "production flow analysis"], - ["lean manufacturing", "six sigma"], - ["lean manufacturing", "theory of constraints"], - ["lean manufacturing", "total productive maintenance"], - ["lean manufacturing", "total quality management"], - ["malcolm baldrige national quality award", "total quality management"], - ["people capability maturity model", "capability maturity model"], - ["people capability maturity model", "capability immaturity model"], - ["people capability maturity model", "capability maturity model integration"], - ["zero defects", "six sigma"], - ["zero defects", "total quality management"], - ["corrective and preventative action", "eight disciplines problem solving"], - ["corrective and preventative action", "good documentation practice"], - ["corrective and preventative action", "good automated manufacturing practice"], - ["kurtosis", "maximum entropy probability distribution"], - ["normal distribution", "bates distribution"], - ["normal distribution", "convolution"], - ["tolerance (engineering)", "probabilistic design"], - ["tolerance (engineering)", "process capability"], - ["tolerance (engineering)", "specification (technical standard)"], - ["tolerance (engineering)", "statistical process control"], - ["tolerance (engineering)", "verification and validation"], - ["continual improvement process", "benchmarking"], - ["continual improvement process", "lean manufacturing"], - ["continual improvement process", "training within industry"], - ["kaizen", "kanban (development)"], - ["kaizen", "six sigma"], - ["kaizen", "statistical process control"], - ["kaizen", "theory of constraints"], - ["kaizen", "total productive maintenance"], - ["kaizen", "triz"], - ["shewhart cycle", "decision cycle"], - ["shewhart cycle", "lean manufacturing"], - ["shewhart cycle", "learning cycle"], - ["shewhart cycle", "ooda loop"], - ["shewhart cycle", "six sigma"], - ["shewhart cycle", "theory of constraints"], - ["shewhart cycle", "software development process"], - ["shewhart cycle", "intelligence cycle"], - ["toyota production system", "w. edwards deming"], - ["toyota production system", "training within industry"], - ["toyota production system", "production flow analysis"], - ["probabilistic risk assessment", "comparison of risk analysis microsoft excel add-ins"], - ["probabilistic risk assessment", "reference class forecasting"], - ["probabilistic risk assessment", "risk assessment"], - ["probabilistic risk assessment", "risk management tools"], - ["comparison of risk analysis microsoft excel add-ins", "spreadsheet"], - ["comparison of risk analysis microsoft excel add-ins", "probability"], - ["comparison of risk analysis microsoft excel add-ins", "plug-in (computing)"], - ["fan chart (statistics)", "box plot"], - ["functional boxplot", "box plot"], - ["functional boxplot", "bagplot"], - ["control-flow diagram", "data-flow diagram"], - ["control-flow diagram", "control-flow graph"], - ["control-flow diagram", "drakon"], - ["control-flow diagram", "flow process chart"], - ["deployment flowchart", "business process"], - ["flow map", "flow diagram"], - ["flow map", "thematic map"], - ["functional flow block diagram", "activity diagram"], - ["functional flow block diagram", "block diagram"], - ["functional flow block diagram", "business process mapping"], - ["functional flow block diagram", "dataflow"], - ["functional flow block diagram", "drakon"], - ["functional flow block diagram", "flow diagram"], - ["functional flow block diagram", "flow process chart"], - ["functional flow block diagram", "function model"], - ["functional flow block diagram", "functional block diagram"], - ["functional flow block diagram", "idef0"], - ["functional flow block diagram", "n2 chart"], - ["functional flow block diagram", "structured analysis and design technique"], - ["functional flow block diagram", "signal flow"], - ["functional flow block diagram", "signal-flow graph"], - ["nassi–shneiderman diagram", "drakon"], - ["nassi–shneiderman diagram", "flowchart"], - ["nassi–shneiderman diagram", "pseudocode"], - ["warnier/orr diagram", "structure chart"], - ["warnier/orr diagram", "structured design"], - ["warnier/orr diagram", "structured programming"], - ["augmented transition network", "context free language"], - ["augmented transition network", "finite state machine"], - ["augmented transition network", "formal grammar"], - ["augmented transition network", "parsing"], - ["augmented transition network", "recursive transition network"], - ["business process mapping", "business model canvas"], - ["business process mapping", "business process discovery"], - ["business process mapping", "business process modeling"], - ["business process mapping", "drakon"], - ["business process mapping", "ethnography"], - ["business process mapping", "n2 chart"], - ["business process mapping", "organizational studies"], - ["business process mapping", "process-centered design"], - ["business process mapping", "structured analysis and design technique"], - ["business process mapping", "systems engineering"], - ["business process mapping", "value stream mapping"], - ["business process mapping", "workflow"], - ["recursive transition network", "syntax diagram"], - ["recursive transition network", "computational linguistics"], - ["recursive transition network", "context free language"], - ["recursive transition network", "finite state machine"], - ["recursive transition network", "formal grammar"], - ["recursive transition network", "parse tree"], - ["recursive transition network", "parsing"], - ["recursive transition network", "augmented transition network"], - ["charles sanders peirce", "charles sanders peirce's type–token distinction"], - ["charles sanders peirce", "continuous predicate"], - ["charles sanders peirce", "entitative graph"], - ["charles sanders peirce", "howland will forgery trial"], - ["charles sanders peirce", "hypostatic abstraction"], - ["charles sanders peirce", "laws of form"], - ["charles sanders peirce", "logic of information"], - ["charles sanders peirce", "logical machine"], - ["charles sanders peirce", "logical matrix"], - ["charles sanders peirce", "mathematical psychology"], - ["charles sanders peirce", "peirce triangle"], - ["charles sanders peirce", "peircean realism"], - ["charles sanders peirce", "phaneron"], - ["charles sanders peirce", "pragmatics"], - ["charles sanders peirce", "relation algebra"], - ["charles sanders peirce", "truth table"], - ["charles sanders peirce", "oliver wendell holmes jr."], - ["charles sanders peirce", "george herbert mead"], - ["logical connectives", "boolean domain"], - ["logical connectives", "boolean function"], - ["logical connectives", "boolean logic"], - ["logical connectives", "boolean-valued function"], - ["logical connectives", "four-valued logic"], - ["logical connectives", "logical constant"], - ["logical connectives", "modal operator"], - ["logical connectives", "propositional calculus"], - ["logical connectives", "truth function"], - ["logical connectives", "truth table"], - ["logical connectives", "truth value"], - ["marquand diagram", "algebraic normal form"], - ["marquand diagram", "binary decision diagram"], - ["marquand diagram", "espresso heuristic logic minimizer"], - ["marquand diagram", "logic optimization"], - ["marquand diagram", "punnett square"], - ["marquand diagram", "quine–mccluskey algorithm"], - ["marquand diagram", "reed–muller expansion"], - ["marquand diagram", "venn diagram"], - ["marquand diagram", "zhegalkin polynomial"], - ["veitch chart", "algebraic normal form"], - ["veitch chart", "binary decision diagram"], - ["veitch chart", "espresso heuristic logic minimizer"], - ["veitch chart", "logic optimization"], - ["veitch chart", "punnett square"], - ["veitch chart", "quine–mccluskey algorithm"], - ["veitch chart", "reed–muller expansion"], - ["veitch chart", "venn diagram"], - ["veitch chart", "zhegalkin polynomial"], - ["octahedron", "disdyakis dodecahedron"], - ["octahedron", "octahedral molecular geometry"], - ["octahedron", "octahedral symmetry"], - ["octahedron", "octahedral sphere"], - ["triquetra", "borromean rings"], - ["triquetra", "celtic knot"], - ["triquetra", "three hares"], - ["triquetra", "trefoil knot"], - ["triquetra", "triskelion"], - ["vesica piscis", "flower of life (geometry)"], - ["vesica piscis", "villarceau circles"], - ["flower of life (geometry)", "knot theory"], - ["villarceau circles", "vesica piscis"], - ["celtic knot", "triquetra"], - ["three hares", "borromean rings"], - ["trefoil knot", "triquetra"], - ["triskelion", "borromean rings"], - ["triskelion", "celtic knot"], - ["triskelion", "three hares"], - ["triskelion", "triquetra"], - ["ampheck", "bitwise operation"], - ["ampheck", "boolean algebra (logic)"], - ["ampheck", "boolean domain"], - ["ampheck", "boolean function"], - ["ampheck", "functional completeness"], - ["ampheck", "propositional logic"], - ["business process automation", "business-driven development"], - ["business process automation", "business process model and notation"], - ["business process automation", "business process reengineering"], - ["business process automation", "business rules engine"], - ["business process automation", "comparison of business integration software"], - ["process-driven application", "business process automation"], - ["process-driven application", "business process management"], - ["process-driven application", "business process modeling"], - ["process-driven application", "computer-supported collaboration"], - ["process-driven application", "document automation"], - ["process-driven application", "enterprise content management"], - ["process-driven application", "process architecture"], - ["process-driven application", "workflow"], - ["process-driven application", "workflow engine"], - ["process-driven application", "workflow management system"], - ["workflow engine", "business rules engine"], - ["workflow engine", "inference engine"], - ["workflow engine", "ripple down rules"], - ["workflow engine", "semantic reasoner"], - ["workflow engine", "bpel"], - ["workflow engine", "workflow management system"], - ["business process reengineering", "business process management"], - ["business process reengineering", "business process modeling notation"], - ["business process reengineering", "kaizen"], - ["business process reengineering", "learning agenda"], - ["enterprise planning systems", "business intelligence"], - ["enterprise planning systems", "business process management"], - ["enterprise planning systems", "enterprise information system"], - ["enterprise planning systems", "management information system"], - ["syntax diagram", "recursive transition network"], - ["syntax diagram", "extended backus–naur form"], - ["finite state machine", "artificial intelligence"], - ["finite state machine", "control system"], - ["finite state machine", "decision table"], - ["finite state machine", "hidden markov model"], - ["finite state machine", "petri net"], - ["finite state machine", "quantum finite automata"], - ["finite state machine", "scxml"], - ["finite state machine", "state diagram"], - ["finite state machine", "uml state machine"], - ["literate programming", "self-documenting code"], - ["program design language", "pseudocode"], - ["program design language", "flow chart"], - ["short code", "algorithm"], - ["structured programming", "drakon"], - ["structured programming", "nassi–shneiderman diagram"], - ["structured programming", "structure chart"], - ["business model canvas", "business process modeling"], - ["business model canvas", "business reference model"], - ["business process discovery", "business process management"], - ["business process discovery", "data mining"], - ["business process discovery", "process analysis"], - ["business process discovery", "process mining"], - ["ethnography", "ontology"], - ["n2 chart", "business process mapping"], - ["n2 chart", "drakon"], - ["n2 chart", "flow chart"], - ["n2 chart", "function model"], - ["n2 chart", "functional flow block diagram"], - ["process-centered design", "business process"], - ["process-centered design", "usability"], - ["structured analysis and design technique", "idef0"], - ["structured analysis and design technique", "jackson structured programming"], - ["structured analysis and design technique", "structure chart"], - ["structured analysis and design technique", "structured systems analysis and design method"], - ["structured analysis and design technique", "systems analysis"], - ["value stream mapping", "business process mapping"], - ["value stream mapping", "lean manufacturing"], - ["value stream mapping", "value-stream-mapping software"], - ["value stream mapping", "value chain"], - ["value stream mapping", "value stream"], - ["process mining", "business process management"], - ["process mining", "machine learning"], - ["process mining", "data science"], - ["process mining", "sequence mining"], - ["process mining", "data mining"], - ["process mining", "intention mining"], - ["process mining", "data visualization"], - ["process mining", "process analysis"], - ["idef0", "function model"], - ["idef0", "functional flow block diagram"], - ["structure chart", "computer-aided software engineering"], - ["structure chart", "system context diagram"], - ["structure chart", "function model"], - ["structure chart", "hipo"], - ["structure chart", "structured analysis and design technique"], - ["structure chart", "warnier/orr diagram"], - ["structure chart", "work breakdown structure"], - ["decision engineering", "antifragility"], - ["decision engineering", "business intelligence"], - ["decision engineering", "decision quality"], - ["decision engineering", "design rationale"], - ["decision engineering", "heuristics in judgment and decision-making"], - ["structured design", "event partitioning"], - ["structured design", "flow-based programming"], - ["structured design", "hipo"], - ["structured design", "jackson structured programming"], - ["block diagram", "black box"], - ["block diagram", "data flow diagram"], - ["block diagram", "functional flow block diagram"], - ["block diagram", "signal-flow graph"], - ["dataflow", "complex event processing"], - ["dataflow", "data flow diagram"], - ["dataflow", "data-flow analysis"], - ["dataflow", "flow-based programming"], - ["dataflow", "pipeline (computing)"], - ["flow diagram", "function model"], - ["flow process chart", "business process mapping"], - ["flow process chart", "data flow diagram"], - ["flow process chart", "flowchart"], - ["flow process chart", "functional flow block diagram"], - ["flow process chart", "workflow"], - ["functional block diagram", "function model"], - ["functional block diagram", "functional flow block diagram"], - ["pipeline (software)", "flow-based programming"], - ["pipeline (software)", "pipeline (computing)"], - ["pipeline (software)", "xml"], - ["control-flow analysis", "control-flow diagram"], - ["control-flow analysis", "data-flow analysis"], - ["data-flow analysis", "abstract interpretation"], - ["interval (graph theory)", "gallery of named graphs"], - ["interval (graph theory)", "graph algorithms"], - ["interval (graph theory)", "glossary of areas of mathematics"], - ["cyclomatic complexity", "software engineering"], - ["cyclomatic complexity", "software testing"], - ["compiler construction", "abstract interpretation"], - ["intermediate representation", "abstract syntax tree"], - ["intermediate representation", "symbol table"], - ["intermediate representation", "graph rewriting"], - ["data-flow diagram", "activity diagram"], - ["data-flow diagram", "business process model and notation"], - ["data-flow diagram", "control-flow diagram"], - ["data-flow diagram", "data island"], - ["data-flow diagram", "dataflow"], - ["data-flow diagram", "directed acyclic graph"], - ["data-flow diagram", "drakon"], - ["data-flow diagram", "functional flow block diagram"], - ["data-flow diagram", "function model"], - ["data-flow diagram", "idef0"], - ["data-flow diagram", "pipeline (software)"], - ["data-flow diagram", "structured analysis and design technique"], - ["data-flow diagram", "structure chart"], - ["data-flow diagram", "system context diagram"], - ["data-flow diagram", "value-stream mapping"], - ["data-flow diagram", "workflow"], - ["power pivot", "microsoft excel"], - ["power pivot", "power bi"], - ["dot language", "lisp2dot"], - ["dot language", "lisp (programming language)"], - ["dot language", "genetic programming"], - ["graphml", "yed"], - ["graphml", "gephi"], - ["graphml", "dot (graph description language)"], - ["graphml", "boost (c++ libraries)"], - ["graph modelling language", "graph query language"], - ["graphviz", "graph drawing"], - ["graphviz", "graph theory"], - ["graphviz", "microsoft automatic graph layout"], - ["tulip (software)", "graphviz"], - ["tulip (software)", "cytoscape"], - ["tulip (software)", "gephi"], - ["networkx", "social network analysis software"], - ["networkx", "jgraph"], - ["nodexl", "graph drawing"], - ["nodexl", "social network analysis software"], - ["nodexl", "graphml"], - ["nodexl", "geographic data files"], - ["nodexl", "cytoscape"], - ["nodexl", "gephi"], - ["netminer", "social network analysis software"], - ["netminer", "semantic network"], - ["jgraph", "networkx"], - ["jgraph", "graph (discrete mathematics)"], - ["jgraph", "network theory"], - ["protein–protein interaction prediction", "interactome"], - ["protein–protein interaction prediction", "protein–protein interaction"], - ["protein–protein interaction prediction", "macromolecular docking"], - ["protein–protein interaction prediction", "protein–dna interaction site predictor"], - ["protein–protein interaction prediction", "two-hybrid screening"], - ["protein–protein interaction prediction", "protein structure prediction software"], - ["microsoft automatic graph layout", "graph algorithms"], - ["microsoft automatic graph layout", "graphviz"], - ["dot (graph description language)", "lisp2dot"], - ["dot (graph description language)", "lisp (programming language)"], - ["dot (graph description language)", "genetic programming"], - ["interactome", "bioinformatics"], - ["interactome", "proteomics"], - ["interactome", "genomics"], - ["interactome", "biological network"], - ["interactome", "connectome"], - ["interactome", "glossary of graph theory"], - ["interactome", "human interactome"], - ["interactome", "mathematical biology"], - ["interactome", "metabolic network"], - ["interactome", "metabolic network modelling"], - ["interactome", "metabolic pathway"], - ["interactome", "network medicine"], - ["interactome", "protein–protein interaction"], - ["interactome", "systems biology"], - ["protein–protein interaction", "biological network"], - ["protein–protein interaction", "human interactome"], - ["protein–protein interaction", "protein–protein interaction prediction"], - ["protein–protein interaction", "systems biology"], - ["protein–dna interaction site predictor", "protein–protein interaction prediction"], - ["protein structure prediction software", "comparison of nucleic acid simulation software"], - ["protein structure prediction software", "molecular design software"], - ["lisp2dot", "graph drawing"], - ["lisp2dot", "graph theory"], - ["lisp2dot", "microsoft automatic graph layout"], - ["comparison of spreadsheet software", "comparison of word processors"], - ["numbers (spreadsheet)", "comparison of spreadsheet software"], - ["numbers (spreadsheet)", "microsoft excel"], - ["numbers (spreadsheet)", "keynote (presentation software)"], - ["numbers (spreadsheet)", "pages (word processor)"], - ["iwork", "comparison of office suites"], - ["iwork", "office open xml software"], - ["iwork", "icloud"], - ["office open xml software", "network effect"], - ["office open xml software", "office suite"], - ["icloud", "comparison of file hosting services"], - ["keynote (presentation software)", "iwork"], - ["keynote (presentation software)", "office open xml software"], - ["pages (word processor)", "comparison of word processors"], - ["spreadsheet", "attribute-value system"], - ["spreadsheet", "comparison of spreadsheet software"], - ["probability", "heuristics in judgment and decision-making"], - ["probability", "statistics"], - ["probability", "estimation theory"], - ["power bi", "power pivot"], - ["power bi", "microsoft excel"], - ["power bi", "sql server reporting services"], - ["customer dynamics", "customer experience"], - ["customer dynamics", "customer relationship management"], - ["customer dynamics", "speech analytics"], - ["mobile business intelligence", "business intelligence"], - ["mobile business intelligence", "real-time business intelligence"], - ["mobile business intelligence", "data mining"], - ["mobile business intelligence", "online analytical processing"], - ["mobile business intelligence", "predictive analytics"], - ["mobile business intelligence", "dashboards (management information systems)"], - ["real-time business intelligence", "business intelligence"], - ["real-time business intelligence", "complex event processing"], - ["sales intelligence", "analytics"], - ["sales intelligence", "business intelligence 2.0"], - ["sales intelligence", "dashboards (management information systems)"], - ["sales intelligence", "integrated business planning"], - ["sales intelligence", "operational intelligence"], - ["sales intelligence", "ooda loop"], - ["sales intelligence", "predictive analytics"], - ["sales intelligence", "process mining"], - ["test and learn", "clinical trials"], - ["test and learn", "scientific method"], - ["test and learn", "design of experiments"], - ["test and learn", "business process reengineering"], - ["test and learn", "a/b testing"], - ["speech analytics", "customer intelligence"], - ["speech analytics", "customer dynamics"], - ["behavioral analytics", "analytics"], - ["behavioral analytics", "big data"], - ["behavioral analytics", "business intelligence"], - ["behavioral analytics", "business process discovery"], - ["behavioral analytics", "customer dynamics"], - ["behavioral analytics", "data mining"], - ["behavioral analytics", "test and learn"], - ["business analytics", "business analysis"], - ["business analytics", "business process discovery"], - ["business analytics", "customer dynamics"], - ["business analytics", "test and learn"], - ["customer analytics", "business analytics"], - ["customer analytics", "customer intelligence"], - ["customer analytics", "data warehouse"], - ["customer analytics", "customer data management"], - ["mobile location analytics", "business intelligence"], - ["mobile location analytics", "customer data management"], - ["operational reporting", "business reporting"], - ["prediction", "forecasting"], - ["prediction", "futures studies"], - ["prediction", "reference class forecasting"], - ["prediction", "regression analysis"], - ["prediction", "thought experiment"], - ["prediction", "trend estimation"], - ["predictive engineering analytics", "control system"], - ["predictive engineering analytics", "internet of things"], - ["prescriptive analytics", "analytics"], - ["prescriptive analytics", "big data"], - ["prescriptive analytics", "business analytics"], - ["prescriptive analytics", "business intelligence"], - ["prescriptive analytics", "data mining"], - ["prescriptive analytics", "decision engineering"], - ["prescriptive analytics", "forecasting"], - ["prescriptive analytics", "operations research"], - ["prescriptive analytics", "statistics"], - ["smart grid", "smart city"], - ["software analytics", "software maintenance"], - ["software analytics", "software archaeology"], - ["software analytics", "software development"], - ["software analytics", "software development process"], - ["software analytics", "user experience"], - ["software analytics", "analytics"], - ["user behavior analytics", "behavioral analytics"], - ["web analytics", "online video analytics"], - ["web analytics", "web mining"] - ], - "clusters": [ - { "key": "0", "color": "#6c3e81", "clusterLabel": "Graph theory" }, - { "key": "1", "color": "#666666", "clusterLabel": "Spreadsheets" }, - { "key": "3", "color": "#57a835", "clusterLabel": "Logic of information" }, - { "key": "4", "color": "#7145cd", "clusterLabel": "Trees and data structures" }, - { "key": "5", "color": "#579f5f", "clusterLabel": "Business intelligence" }, - { "key": "6", "color": "#d043c4", "clusterLabel": "Exploratory data analysis" }, - { "key": "7", "color": "#477028", "clusterLabel": "Softwares and data mining" }, - { "key": "8", "color": "#b174cb", "clusterLabel": "Project management" }, - { "key": "10", "color": "#a4923a", "clusterLabel": "Engineering" }, - { "key": "11", "color": "#5f83cc", "clusterLabel": "Semantic networks" }, - { "key": "12", "color": "#666666", "clusterLabel": "Sociometry" }, - { "key": "13", "color": "#666666", "clusterLabel": "Ideas and concepts" }, - { "key": "14", "color": "#db4139", "clusterLabel": "Arguments / Logic" }, - { "key": "15", "color": "#379982", "clusterLabel": "Scientific classification" }, - { "key": "16", "color": "#666666", "clusterLabel": "Decision trees" }, - { "key": "17", "color": "#666666", "clusterLabel": "Motion perception" }, - { "key": "18", "color": "#c94c83", "clusterLabel": "Artificial intelligence" }, - { "key": "19", "color": "#666666", "clusterLabel": "Linguistics" }, - { "key": "20", "color": "#7c5d28", "clusterLabel": "Collaborative problem solving" }, - { "key": "21", "color": "#a54a49", "clusterLabel": "Knowledge management" }, - { "key": "22", "color": "#666666", "clusterLabel": "Clinical terms and technologies" }, - { "key": "23", "color": "#cf7435", "clusterLabel": "Network Science" }, - { "key": "25", "color": "#666666", "clusterLabel": "Knots" }, - { "key": "24", "color": "#666666", "clusterLabel": "Tensors (mathematics)" } - ], - "tags": [ - { "key": "Chart type", "image": "charttype.svg" }, - { "key": "Company", "image": "company.svg" }, - { "key": "Concept", "image": "concept.svg" }, - { "key": "Field", "image": "field.svg" }, - { "key": "List", "image": "list.svg" }, - { "key": "Method", "image": "method.svg" }, - { "key": "Organization", "image": "organization.svg" }, - { "key": "Person", "image": "person.svg" }, - { "key": "Technology", "image": "technology.svg" }, - { "key": "Tool", "image": "tool.svg" }, - { "key": "unknown", "image": "unknown.svg" } - ] -} diff --git a/modules/demo/sigma-server/public/dataset_small.json b/modules/demo/sigma-server/public/dataset_small.json deleted file mode 100644 index fbc30ccf0..000000000 --- a/modules/demo/sigma-server/public/dataset_small.json +++ /dev/null @@ -1,105 +0,0 @@ -{ - "nodes": [ - { - "key": "customer data management", - "label": "Customer data management", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Customer%20data%20management", - "cluster": "7", - "x": -278.2200012207031, - "y": 436.0100402832031, - "score": 0 - }, - { - "key": "educational data mining", - "label": "Educational data mining", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Educational%20data%20mining", - "cluster": "7", - "x": -1.9823756217956543, - "y": 250.4990692138672, - "score": 0 - }, - { - "key": "pathogenomics", - "label": "Pathogenomics", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Pathogenomics", - "cluster": "15", - "x": 959.1505737304688, - "y": -845.7308349609375, - "score": 0 - }, - { - "key": "office suite", - "label": "Office suite", - "tag": "Technology", - "URL": "https://en.wikipedia.org/wiki/Office%20suite", - "cluster": "1", - "x": -768.05224609375, - "y": 397.08294677734375, - "score": 0 - }, - { - "key": "human interactome", - "label": "Human interactome", - "tag": "Concept", - "URL": "https://en.wikipedia.org/wiki/Human%20interactome", - "cluster": "15", - "x": 1014.8722534179688, - "y": -673.8775634765625, - "score": 0 - } - ], - "edges": [ - ["office suite", "human interactome"], - ["educational data mining", "human interactome"], - ["customer data management", "office suite"], - ["educational data mining", "office suite"], - ["pathogenomics", "educational data mining"], - ["pathogenomics", "office suite"], - ["educational data mining", "pathogenomics"], - ["educational data mining", "customer data management"], - ["office suite", "pathogenomics"], - ["customer data management", "pathogenomics"] - ], - "clusters": [ - { "key": "0", "color": "#6c3e81", "clusterLabel": "human interactome" }, - { "key": "1", "color": "#666666", "clusterLabel": "Spreadsheets" }, - { "key": "3", "color": "#57a835", "clusterLabel": "Logic of information" }, - { "key": "4", "color": "#7145cd", "clusterLabel": "Trees and data structures" }, - { "key": "5", "color": "#579f5f", "clusterLabel": "Business intelligence" }, - { "key": "6", "color": "#d043c4", "clusterLabel": "Exploratory data analysis" }, - { "key": "7", "color": "#477028", "clusterLabel": "Softwares and data mining" }, - { "key": "8", "color": "#b174cb", "clusterLabel": "Project management" }, - { "key": "10", "color": "#a4923a", "clusterLabel": "Engineering" }, - { "key": "11", "color": "#5f83cc", "clusterLabel": "Semantic networks" }, - { "key": "12", "color": "#666666", "clusterLabel": "Sociometry" }, - { "key": "13", "color": "#666666", "clusterLabel": "Ideas and concepts" }, - { "key": "14", "color": "#db4139", "clusterLabel": "Arguments / Logic" }, - { "key": "15", "color": "#379982", "clusterLabel": "Scientific classification" }, - { "key": "16", "color": "#666666", "clusterLabel": "Decision trees" }, - { "key": "17", "color": "#666666", "clusterLabel": "Motion perception" }, - { "key": "18", "color": "#c94c83", "clusterLabel": "Artificial intelligence" }, - { "key": "19", "color": "#666666", "clusterLabel": "Linguistics" }, - { "key": "20", "color": "#7c5d28", "clusterLabel": "Collaborative problem solving" }, - { "key": "21", "color": "#a54a49", "clusterLabel": "Knowledge management" }, - { "key": "22", "color": "#666666", "clusterLabel": "Clinical terms and technologies" }, - { "key": "23", "color": "#cf7435", "clusterLabel": "Network Science" }, - { "key": "25", "color": "#666666", "clusterLabel": "Knots" }, - { "key": "24", "color": "#666666", "clusterLabel": "Tensors (mathematics)" } - ], - "tags": [ - { "key": "Chart type", "image": "charttype.svg" }, - { "key": "Company", "image": "company.svg" }, - { "key": "Concept", "image": "concept.svg" }, - { "key": "Field", "image": "field.svg" }, - { "key": "List", "image": "list.svg" }, - { "key": "Method", "image": "method.svg" }, - { "key": "Organization", "image": "organization.svg" }, - { "key": "Person", "image": "person.svg" }, - { "key": "Technology", "image": "technology.svg" }, - { "key": "Tool", "image": "tool.svg" }, - { "key": "unknown", "image": "unknown.svg" } - ] -} diff --git a/modules/demo/sigma-server/public/dataset_small.json.gz b/modules/demo/sigma-server/public/dataset_small.json.gz deleted file mode 100644 index 3c8dc7c1596c8822b1d65c1f9117395f6550b00b..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 1138 zcmV-&1daP2iwFoV)L~)(17u-zVRL14Uvq6?Y-}!Sb8l_{rB~5z+cp$^&sPX325dm8 zNF*gnecQYa8 zR<|`m(%Y9Zzk{Oz_JF1d{xcM%aaj<`vz(;7%<_!U5l19TVpf((UXqj+IVY!a)Cs>b zwQ9{;ONTIXjgNl^A2Wyp2GVRyL7A0tnk5;hoF*(UiV*>?3zo$&P*7IpNeN7y#(-Ha zwN#PYXs-|g-lN0&`QIqHYE5J6?TIApP(cV2+#w4S9q_z}lZ+5HnPiv*EqR<2q+~hg zoU)TSSZ%KDN`_Ne>Dz{R~I|PT0aWXCnnqfFsrq(htOXzE9?7HV3!DC}Qp0Z3<7~YLl z%0;5BcI-NDH_~sc!kWycO_s}SiGlvIak^E`_2e~;h6R!sd-)i!N*I+41AP0rgCyaN z-R}AX5j0z;u`c--lyMFx4RlG&(mx10oc>H}R2J_loyad+7F0@ft_m9Rpqy6u2V?Ir;!<+7n2prn2XD6+3_TX+k4lLh z`EvJ`LA#nrxw>U3Eit&CZM_MEyXZ3NZGxdqG)#F3Coy!6QUjKT9V(KIa4!6sb6c7p zJLO-M)DA!*AAE;F@nfOhnb1wtDI2JpX>6ifSu$BroV3%vNoV?%wiM@UoD`9=)w_X3r*K1(C|N0H#5RKhEwx$cS?nJvC*X&}m z75kIxsG^U}RP4We2KmbnnaREaWsi~@2+ZWZQ*cZfL$CYLO#XXYi&p=)+i!+dW-u^Q zdkx2)NmbW}X7Y#MJA;~oZ0GpBF{T+;Kwu_!)82v8#!c;G`-&i&v#)3W1G3Fi|0odv E0LkYpQ~&?~ diff --git a/modules/demo/sigma-server/public/dataset_small.json.txt b/modules/demo/sigma-server/public/dataset_small.json.txt deleted file mode 100644 index fbc30ccf0..000000000 --- a/modules/demo/sigma-server/public/dataset_small.json.txt +++ /dev/null @@ -1,105 +0,0 @@ -{ - "nodes": [ - { - "key": "customer data management", - "label": "Customer data management", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Customer%20data%20management", - "cluster": "7", - "x": -278.2200012207031, - "y": 436.0100402832031, - "score": 0 - }, - { - "key": "educational data mining", - "label": "Educational data mining", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Educational%20data%20mining", - "cluster": "7", - "x": -1.9823756217956543, - "y": 250.4990692138672, - "score": 0 - }, - { - "key": "pathogenomics", - "label": "Pathogenomics", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Pathogenomics", - "cluster": "15", - "x": 959.1505737304688, - "y": -845.7308349609375, - "score": 0 - }, - { - "key": "office suite", - "label": "Office suite", - "tag": "Technology", - "URL": "https://en.wikipedia.org/wiki/Office%20suite", - "cluster": "1", - "x": -768.05224609375, - "y": 397.08294677734375, - "score": 0 - }, - { - "key": "human interactome", - "label": "Human interactome", - "tag": "Concept", - "URL": "https://en.wikipedia.org/wiki/Human%20interactome", - "cluster": "15", - "x": 1014.8722534179688, - "y": -673.8775634765625, - "score": 0 - } - ], - "edges": [ - ["office suite", "human interactome"], - ["educational data mining", "human interactome"], - ["customer data management", "office suite"], - ["educational data mining", "office suite"], - ["pathogenomics", "educational data mining"], - ["pathogenomics", "office suite"], - ["educational data mining", "pathogenomics"], - ["educational data mining", "customer data management"], - ["office suite", "pathogenomics"], - ["customer data management", "pathogenomics"] - ], - "clusters": [ - { "key": "0", "color": "#6c3e81", "clusterLabel": "human interactome" }, - { "key": "1", "color": "#666666", "clusterLabel": "Spreadsheets" }, - { "key": "3", "color": "#57a835", "clusterLabel": "Logic of information" }, - { "key": "4", "color": "#7145cd", "clusterLabel": "Trees and data structures" }, - { "key": "5", "color": "#579f5f", "clusterLabel": "Business intelligence" }, - { "key": "6", "color": "#d043c4", "clusterLabel": "Exploratory data analysis" }, - { "key": "7", "color": "#477028", "clusterLabel": "Softwares and data mining" }, - { "key": "8", "color": "#b174cb", "clusterLabel": "Project management" }, - { "key": "10", "color": "#a4923a", "clusterLabel": "Engineering" }, - { "key": "11", "color": "#5f83cc", "clusterLabel": "Semantic networks" }, - { "key": "12", "color": "#666666", "clusterLabel": "Sociometry" }, - { "key": "13", "color": "#666666", "clusterLabel": "Ideas and concepts" }, - { "key": "14", "color": "#db4139", "clusterLabel": "Arguments / Logic" }, - { "key": "15", "color": "#379982", "clusterLabel": "Scientific classification" }, - { "key": "16", "color": "#666666", "clusterLabel": "Decision trees" }, - { "key": "17", "color": "#666666", "clusterLabel": "Motion perception" }, - { "key": "18", "color": "#c94c83", "clusterLabel": "Artificial intelligence" }, - { "key": "19", "color": "#666666", "clusterLabel": "Linguistics" }, - { "key": "20", "color": "#7c5d28", "clusterLabel": "Collaborative problem solving" }, - { "key": "21", "color": "#a54a49", "clusterLabel": "Knowledge management" }, - { "key": "22", "color": "#666666", "clusterLabel": "Clinical terms and technologies" }, - { "key": "23", "color": "#cf7435", "clusterLabel": "Network Science" }, - { "key": "25", "color": "#666666", "clusterLabel": "Knots" }, - { "key": "24", "color": "#666666", "clusterLabel": "Tensors (mathematics)" } - ], - "tags": [ - { "key": "Chart type", "image": "charttype.svg" }, - { "key": "Company", "image": "company.svg" }, - { "key": "Concept", "image": "concept.svg" }, - { "key": "Field", "image": "field.svg" }, - { "key": "List", "image": "list.svg" }, - { "key": "Method", "image": "method.svg" }, - { "key": "Organization", "image": "organization.svg" }, - { "key": "Person", "image": "person.svg" }, - { "key": "Technology", "image": "technology.svg" }, - 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- - - - - image/svg+xml - - - - - - - - - diff --git a/modules/demo/sigma-server/public/images/company.svg b/modules/demo/sigma-server/public/images/company.svg deleted file mode 100644 index 442831bd1..000000000 --- a/modules/demo/sigma-server/public/images/company.svg +++ /dev/null @@ -1,64 +0,0 @@ - - - - - - image/svg+xml - - - - - - - - - - diff --git a/modules/demo/sigma-server/public/images/concept.svg b/modules/demo/sigma-server/public/images/concept.svg deleted file mode 100644 index 6d6c619a8..000000000 --- a/modules/demo/sigma-server/public/images/concept.svg +++ /dev/null @@ -1,59 +0,0 @@ - - - - - - image/svg+xml - - - - - - - - - diff --git a/modules/demo/sigma-server/public/images/field.svg b/modules/demo/sigma-server/public/images/field.svg deleted file mode 100644 index 116e06fdc..000000000 --- a/modules/demo/sigma-server/public/images/field.svg +++ /dev/null @@ -1,59 +0,0 @@ - - - - - - image/svg+xml - - - - - - - - - diff --git a/modules/demo/sigma-server/public/images/list.svg b/modules/demo/sigma-server/public/images/list.svg deleted file mode 100644 index ead61e61c..000000000 --- a/modules/demo/sigma-server/public/images/list.svg +++ /dev/null @@ -1,59 +0,0 @@ - - - - - - image/svg+xml - - - - - - - - - diff --git a/modules/demo/sigma-server/public/images/method.svg b/modules/demo/sigma-server/public/images/method.svg deleted file mode 100644 index 9d14d80d8..000000000 --- a/modules/demo/sigma-server/public/images/method.svg +++ /dev/null @@ -1,59 +0,0 @@ - - - - - - image/svg+xml - - - - - - - - - diff --git a/modules/demo/sigma-server/public/images/organization.svg b/modules/demo/sigma-server/public/images/organization.svg deleted file mode 100644 index 6ab7858d3..000000000 --- a/modules/demo/sigma-server/public/images/organization.svg +++ /dev/null @@ -1,59 +0,0 @@ - - - - - - image/svg+xml - - - - - - - - - diff --git a/modules/demo/sigma-server/public/images/person.svg b/modules/demo/sigma-server/public/images/person.svg deleted file mode 100644 index 1d586dcaf..000000000 --- a/modules/demo/sigma-server/public/images/person.svg +++ /dev/null @@ -1,59 +0,0 @@ - - - - - - image/svg+xml - - - - - - - - - diff --git a/modules/demo/sigma-server/public/images/technology.svg b/modules/demo/sigma-server/public/images/technology.svg deleted file mode 100644 index f108a2526..000000000 --- a/modules/demo/sigma-server/public/images/technology.svg +++ /dev/null @@ -1,59 +0,0 @@ - - - - - - image/svg+xml - - - - - - - - - diff --git a/modules/demo/sigma-server/public/images/tool.svg b/modules/demo/sigma-server/public/images/tool.svg deleted file mode 100644 index 65d6a6adc..000000000 --- a/modules/demo/sigma-server/public/images/tool.svg +++ /dev/null @@ -1,68 +0,0 @@ - - - - - - image/svg+xml - - - - - - - - - - - - diff --git a/modules/demo/sigma-server/public/images/unknown.svg b/modules/demo/sigma-server/public/images/unknown.svg deleted file mode 100644 index fa684092a..000000000 --- a/modules/demo/sigma-server/public/images/unknown.svg +++ /dev/null @@ -1,58 +0,0 @@ - - - - - - image/svg+xml - - - - - - - - - diff --git a/modules/demo/sigma-server/public/index.html b/modules/demo/sigma-server/public/index.html deleted file mode 100644 index 61f15ed27..000000000 --- a/modules/demo/sigma-server/public/index.html +++ /dev/null @@ -1,34 +0,0 @@ - - - - - - - - - - A cartography of Wikipedia pages around data visualization - - - -
- - - diff --git a/modules/demo/sigma-server/src/canvas-utils.ts b/modules/demo/sigma-server/src/canvas-utils.ts deleted file mode 100644 index ce5524ce1..000000000 --- a/modules/demo/sigma-server/src/canvas-utils.ts +++ /dev/null @@ -1,114 +0,0 @@ -import { NodeDisplayData, PartialButFor, PlainObject } from "sigma/types"; -import { Settings } from "sigma/settings"; - -const TEXT_COLOR = "#000000"; - -/** - * This function draw in the input canvas 2D context a rectangle. - * It only deals with tracing the path, and does not fill or stroke. - */ -export function drawRoundRect( - ctx: CanvasRenderingContext2D, - x: number, - y: number, - width: number, - height: number, - radius: number, -): void { - ctx.beginPath(); - ctx.moveTo(x + radius, y); - ctx.lineTo(x + width - radius, y); - ctx.quadraticCurveTo(x + width, y, x + width, y + radius); - ctx.lineTo(x + width, y + height - radius); - ctx.quadraticCurveTo(x + width, y + height, x + width - radius, y + height); - ctx.lineTo(x + radius, y + height); - ctx.quadraticCurveTo(x, y + height, x, y + height - radius); - ctx.lineTo(x, y + radius); - ctx.quadraticCurveTo(x, y, x + radius, y); - ctx.closePath(); -} - -/** - * Custom hover renderer - */ -export function drawHover(context: CanvasRenderingContext2D, data: PlainObject, settings: PlainObject) { - const size = settings.labelSize; - const font = settings.labelFont; - const weight = settings.labelWeight; - const subLabelSize = size - 2; - - const label = data.label; - const subLabel = data.tag !== "unknown" ? data.tag : ""; - const clusterLabel = data.clusterLabel; - - // Then we draw the label background - context.beginPath(); - context.fillStyle = "#fff"; - context.shadowOffsetX = 0; - context.shadowOffsetY = 2; - context.shadowBlur = 8; - context.shadowColor = "#000"; - - context.font = `${weight} ${size}px ${font}`; - const labelWidth = context.measureText(label).width; - context.font = `${weight} ${subLabelSize}px ${font}`; - const subLabelWidth = subLabel ? context.measureText(subLabel).width : 0; - context.font = `${weight} ${subLabelSize}px ${font}`; - const clusterLabelWidth = clusterLabel ? context.measureText(clusterLabel).width : 0; - - const textWidth = Math.max(labelWidth, subLabelWidth, clusterLabelWidth); - - const x = Math.round(data.x); - const y = Math.round(data.y); - const w = Math.round(textWidth + size / 2 + data.size + 3); - const hLabel = Math.round(size / 2 + 4); - const hSubLabel = subLabel ? Math.round(subLabelSize / 2 + 9) : 0; - const hClusterLabel = Math.round(subLabelSize / 2 + 9); - - drawRoundRect(context, x, y - hSubLabel - 12, w, hClusterLabel + hLabel + hSubLabel + 12, 5); - context.closePath(); - context.fill(); - - context.shadowOffsetX = 0; - context.shadowOffsetY = 0; - context.shadowBlur = 0; - - // And finally we draw the labels - context.fillStyle = TEXT_COLOR; - context.font = `${weight} ${size}px ${font}`; - context.fillText(label, data.x + data.size + 3, data.y + size / 3); - - if (subLabel) { - context.fillStyle = TEXT_COLOR; - context.font = `${weight} ${subLabelSize}px ${font}`; - context.fillText(subLabel, data.x + data.size + 3, data.y - (2 * size) / 3 - 2); - } - - context.fillStyle = data.color; - context.font = `${weight} ${subLabelSize}px ${font}`; - context.fillText(clusterLabel, data.x + data.size + 3, data.y + size / 3 + 3 + subLabelSize); -} - -/** - * Custom label renderer - */ -export default function drawLabel( - context: CanvasRenderingContext2D, - data: PartialButFor, - settings: Settings, -): void { - if (!data.label) return; - - const size = settings.labelSize, - font = settings.labelFont, - weight = settings.labelWeight; - - context.font = `${weight} ${size}px ${font}`; - const width = context.measureText(data.label).width + 8; - - context.fillStyle = "#ffffffcc"; - context.fillRect(data.x + data.size, data.y + size / 3 - 15, width, 20); - - context.fillStyle = "#000"; - context.fillText(data.label, data.x + data.size + 3, data.y + size / 3); -} diff --git a/modules/demo/sigma-server/src/index.tsx b/modules/demo/sigma-server/src/index.tsx deleted file mode 100644 index f79341fbc..000000000 --- a/modules/demo/sigma-server/src/index.tsx +++ /dev/null @@ -1,12 +0,0 @@ -import React from "react"; -import ReactDOM from "react-dom"; - -import "./styles.css"; -import Root from "./views/Root"; - -ReactDOM.render( - - - , - document.getElementById("root"), -); diff --git a/modules/demo/sigma-server/src/react-app-env.d.ts b/modules/demo/sigma-server/src/react-app-env.d.ts deleted file mode 100644 index 6431bc5fc..000000000 --- a/modules/demo/sigma-server/src/react-app-env.d.ts +++ /dev/null @@ -1 +0,0 @@ -/// diff --git a/modules/demo/sigma-server/src/styles.css b/modules/demo/sigma-server/src/styles.css deleted file mode 100644 index ab2092565..000000000 --- a/modules/demo/sigma-server/src/styles.css +++ /dev/null @@ -1,335 +0,0 @@ -@import url("https://fonts.googleapis.com/css2?family=Lora&family=Public+Sans:ital@0;1&display=swap"); - -/** - * VARIABLES: - * ********** - */ -:root { - --ruby: #e22653; - --grey: #999; - --dark-grey: #666; - --light-grey: #ccc; - --cream: #f9f7ed; - --transparent-white: #ffffffcc; - --transition: all ease-out 300ms; - --shadow: 0 1px 5px var(--dark-grey); - --hover-opacity: 0.7; - --stage-padding: 8px; - --panels-width: 350px; - --border-radius: 3px; -} - -/** - * BASE STYLES: - * ************ - */ -body { - font-family: "Public Sans", sans-serif; - background: white; - font-size: 0.9em; - overflow: hidden; -} -h1, -h2 { - font-family: Lora, serif; -} -h2 { - font-size: 1.3em; - margin: 0; -} -h2 > * { - vertical-align: text-top; -} -a { - color: black !important; -} -a:hover { - opacity: var(--hover-opacity); -} - -/** - * LAYOUT: - * ******* - */ -body { - margin: 0; - padding: 0; -} -#root { - width: 100vw; - height: 100vh; - position: relative; -} -#app-root, -.sigma-container { - position: absolute; - inset: 0; -} -.controls { - position: absolute; - bottom: var(--stage-padding); - left: var(--stage-padding); -} -.graph-title { - z-index: 1; - position: absolute; - top: 0; - left: 0; - display: flex; - flex-direction: column; - align-items: flex-start; - max-width: calc(100vw - var(--panels-width) - 3 * var(--stage-padding)); - padding: var(--stage-padding); -} -.graph-title h1 { - font-size: 1.8em; -} -.graph-title h1, -.graph-title h2 { - margin: 0; - background: var(--transparent-white); -} -.panels { - position: absolute; - bottom: 0; - right: 0; - width: 350px; - max-height: calc(100vh - 2 * var(--stage-padding)); - overflow-y: auto; - padding: var(--stage-padding); - scrollbar-width: thin; -} -::-webkit-scrollbar { - width: 5px; -} -::-webkit-scrollbar-track { - background: transparent; -} -::-webkit-scrollbar-thumb { - background-color: var(--grey); - border: transparent; -} - -/** - * USEFUL CLASSES: - * *************** - */ -div.ico > button { - display: block; - position: relative; - font-size: 1.8em; - width: 2em; - height: 2em; - border-radius: var(--border-radius); - box-shadow: var(--shadow); - color: black; - background: white; - border: none; - outline: none; - margin-top: 0.2em; - cursor: pointer; -} -div.ico > button:hover { - color: var(--dark-grey); -} -div.ico > button > * { - position: absolute; - inset: 0; - left: 50%; - top: 50%; - transform: translate(-50%, -50%); -} - -button.btn { - background: white; - color: black; - border: 1px solid black; - outline: none; - border-radius: var(--border-radius); - padding: 0.3em 0.5em; - font-size: 1em; - font-family: Lato, sans-serif; - cursor: pointer; -} -button.btn:hover { - opacity: var(--hover-opacity); -} -button.btn > * { - vertical-align: baseline; -} -.buttons { - display: flex; - justify-content: space-between; -} - -ul { - list-style: none; - padding: 0; -} -ul > li { - margin-top: 0.2em; -} -.text-muted { - color: var(--dark-grey); -} -.text-small { - font-size: 0.7em; - vertical-align: baseline; -} -.mouse-pointer { - cursor: pointer; -} - -/** - * CAPTIONS PANELS: - * **************** - */ -.panel { - background: white; - padding: 1em; - border-radius: var(--border-radius); - box-shadow: var(--shadow); -} -.panel:not(:last-child) { - margin-bottom: 0.5em; -} -.panel h2 button { - float: right; - background: white; - border: 1px solid black; - border-radius: var(--border-radius); - font-size: 1.2em; - height: 1em; - width: 1em; - text-align: center; - padding: 0; - cursor: pointer; - display: flex; - align-items: center; - justify-content: center; -} -.panel h2 button:hover { - opacity: var(--hover-opacity); -} - -.caption-row input[type="checkbox"] { - display: none; -} -.caption-row input[type="checkbox"]:not(:checked) + label { - color: var(--dark-grey); -} -.caption-row input[type="checkbox"]:not(:checked) + label .circle { - background-color: white !important; -} -.caption-row label { - display: flex; - flex-direction: row; - cursor: pointer; -} -.caption-row label:hover { - opacity: var(--hover-opacity); -} -.caption-row label .circle { - flex-shrink: 0; - display: inline-block; - width: 1.2em; - height: 1.2em; - border-radius: 1.2em; - vertical-align: middle; - box-sizing: border-box; - background-color: var(--dark-grey); - background-position: center; - background-size: cover; - background-repeat: no-repeat; - margin-right: 0.2em; - transition: var(--transition); - border: 3px solid var(--dark-grey); -} -.caption-row label .node-label { - flex-grow: 1; -} -.caption-row label .bar { - position: relative; - background: var(--light-grey); - height: 3px; - margin-bottom: 0.2em; -} -.caption-row label .bar .inside-bar { - position: absolute; - top: 0; - left: 0; - height: 100%; - background: var(--dark-grey); - transition: var(--transition); -} - -/** - * SEARCH FIELD: - * ************* - */ -.search-wrapper { - position: relative; -} -.search-wrapper > input[type="search"] { - width: calc(100%); - height: 3em; - box-shadow: var(--shadow); - border: none; - outline: none; - border-radius: var(--border-radius); - margin-bottom: 0.5em; - padding: 1em 1em 1em 3em; - font-family: Lato, sans-serif; - font-size: 1em; -} -.search-wrapper > .icon { - position: absolute; - width: 1em; - height: 1em; - top: 1em; - left: 1em; -} - -/** - * RESPONSIVENESS: - * *************** - */ -@media (max-width: 767.98px) { - #app-root:not(.show-contents) .contents, - #app-root.show-contents .controls { - display: none; - } - - #app-root.show-contents .contents { - position: absolute; - inset: 0; - overflow-y: auto; - scrollbar-width: thin; - background: var(--transparent-white); - } - #app-root.show-contents .graph-title, - #app-root.show-contents .panels { - height: auto; - max-height: unset; - max-width: unset; - position: static; - overflow-y: visible; - width: auto; - } - #app-root.show-contents .graph-title { - background: white; - padding-right: calc(3em + 2 * var(--stage-padding)); - min-height: 3em; - } - #app-root.show-contents .contents .hide-contents { - position: absolute; - top: var(--stage-padding); - right: var(--stage-padding); - } -} -@media (min-width: 768px) { - button.show-contents, - button.hide-contents { - display: none !important; - } -} diff --git a/modules/demo/sigma-server/src/types.ts b/modules/demo/sigma-server/src/types.ts deleted file mode 100644 index 86e9012d6..000000000 --- a/modules/demo/sigma-server/src/types.ts +++ /dev/null @@ -1,32 +0,0 @@ -export interface NodeData { - key: string; - label: string; - tag: string; - URL: string; - cluster: string; - x: number; - y: number; -} - -export interface Cluster { - key: string; - color: string; - clusterLabel: string; -} - -export interface Tag { - key: string; - image: string; -} - -export interface Dataset { - nodes: NodeData[]; - edges: [string, string][]; - clusters: Cluster[]; - tags: Tag[]; -} - -export interface FiltersState { - clusters: Record; - tags: Record; -} diff --git a/modules/demo/sigma-server/src/use-debounce.ts b/modules/demo/sigma-server/src/use-debounce.ts deleted file mode 100644 index 60ffc9174..000000000 --- a/modules/demo/sigma-server/src/use-debounce.ts +++ /dev/null @@ -1,27 +0,0 @@ -import { useEffect, useState } from "react"; - -function useDebounce(value: T, delay: number): T { - // State and setters for debounced value - const [debouncedValue, setDebouncedValue] = useState(value); - - useEffect( - () => { - // Update debounced value after delay - const handler = setTimeout(() => { - if (value !== debouncedValue) setDebouncedValue(value); - }, delay); - - // Cancel the timeout if value changes (also on delay change or unmount) - // This is how we prevent debounced value from updating if value is changed ... - // .. within the delay period. Timeout gets cleared and restarted. - return () => { - clearTimeout(handler); - }; - }, - [value, delay], // Only re-call effect if value or delay changes - ); - - return debouncedValue; -} - -export default useDebounce; diff --git a/modules/demo/sigma-server/src/views/ClustersPanel.tsx b/modules/demo/sigma-server/src/views/ClustersPanel.tsx deleted file mode 100644 index 2fcad0141..000000000 --- a/modules/demo/sigma-server/src/views/ClustersPanel.tsx +++ /dev/null @@ -1,112 +0,0 @@ -import React, { FC, useEffect, useMemo, useState } from "react"; -import { useSigma } from "react-sigma-v2"; -import { sortBy, values, keyBy, mapValues } from "lodash"; -import { MdGroupWork } from "react-icons/md"; -import { AiOutlineCheckCircle, AiOutlineCloseCircle } from "react-icons/ai"; - -import { Cluster, FiltersState } from "../types"; -import Panel from "./Panel"; - -const ClustersPanel: FC<{ - clusters: Cluster[]; - filters: FiltersState; - toggleCluster: (cluster: string) => void; - setClusters: (clusters: Record) => void; -}> = ({ clusters, filters, toggleCluster, setClusters }) => { - const sigma = useSigma(); - const graph = sigma.getGraph(); - - const nodesPerCluster = useMemo(() => { - const index: Record = {}; - graph.forEachNode((_, { cluster }) => (index[cluster] = (index[cluster] || 0) + 1)); - return index; - }, []); - - const maxNodesPerCluster = useMemo(() => Math.max(...values(nodesPerCluster)), [nodesPerCluster]); - const visibleClustersCount = useMemo(() => Object.keys(filters.clusters).length, [filters]); - - const [visibleNodesPerCluster, setVisibleNodesPerCluster] = useState>(nodesPerCluster); - useEffect(() => { - // To ensure the graphology instance has up to data "hidden" values for - // nodes, we wait for next frame before reindexing. This won't matter in the - // UX, because of the visible nodes bar width transition. - requestAnimationFrame(() => { - const index: Record = {}; - graph.forEachNode((_, { cluster, hidden }) => !hidden && (index[cluster] = (index[cluster] || 0) + 1)); - setVisibleNodesPerCluster(index); - }); - }, [filters]); - - const sortedClusters = useMemo( - () => sortBy(clusters, (cluster) => -nodesPerCluster[cluster.key]), - [clusters, nodesPerCluster], - ); - - return ( - - Clusters - {visibleClustersCount < clusters.length ? ( - - {" "} - ({visibleClustersCount} / {clusters.length}) - - ) : ( - "" - )} - - } - > -

- Click a cluster to show/hide related pages from the network. -

-

- {" "} - -

-
    - {sortedClusters.map((cluster) => { - const nodesCount = nodesPerCluster[cluster.key]; - const visibleNodesCount = visibleNodesPerCluster[cluster.key] || 0; - return ( -
  • 1 ? "s" : ""}${ - visibleNodesCount !== nodesCount ? ` (only ${visibleNodesCount} visible)` : "" - }`} - > - toggleCluster(cluster.key)} - id={`cluster-${cluster.key}`} - /> -
    • - ); - })} -
- - ); -}; - -export default ClustersPanel; diff --git a/modules/demo/sigma-server/src/views/DescriptionPanel.tsx b/modules/demo/sigma-server/src/views/DescriptionPanel.tsx deleted file mode 100644 index 9f587f8c1..000000000 --- a/modules/demo/sigma-server/src/views/DescriptionPanel.tsx +++ /dev/null @@ -1,70 +0,0 @@ -import React, { FC } from "react"; -import { BsInfoCircle } from "react-icons/bs"; - -import Panel from "./Panel"; - -const DescriptionPanel: FC = () => { - return ( - - Description - - } - > -

- This map represents a network of Wikipedia articles around the topic of "Data vizualisation". Each{" "} - node represents an article, and each edge a{" "} - - "See also" link - - . -

-

- The seed articles were selected by hand by the{" "} - - Sciences-Po médialab - {" "} - team, and the network was crawled using{" "} - - Seealsology - - , and then cleaned and enriched manually. This makes the dataset creditable to both the médialab team and{" "} - - Wikipedia editors - - . -

-

- This web application has been developed by{" "} - - OuestWare - - , using{" "} - - react - {" "} - and{" "} - - sigma.js - - . You can read the source code{" "} - - on GitHub - - . -

-

- Nodes sizes are related to their{" "} - - betweenness centrality - - . More central nodes (ie. bigger nodes) are important crossing points in the network. Finally, You can click a - node to open the related Wikipedia article. -

- - ); -}; - -export default DescriptionPanel; diff --git a/modules/demo/sigma-server/src/views/GraphDataController.tsx b/modules/demo/sigma-server/src/views/GraphDataController.tsx deleted file mode 100644 index a374e6ce7..000000000 --- a/modules/demo/sigma-server/src/views/GraphDataController.tsx +++ /dev/null @@ -1,62 +0,0 @@ -import { useSigma } from "react-sigma-v2"; -import { FC, useEffect } from "react"; -import { keyBy, omit } from "lodash"; - -import { Dataset, FiltersState } from "../types"; - -const GraphDataController: FC<{ dataset: Dataset; filters: FiltersState }> = ({ dataset, filters, children }) => { - const sigma = useSigma(); - const graph = sigma.getGraph(); - - /** - * Feed graphology with the new dataset: - */ - useEffect(() => { - console.log('useEffect GraphDataController.'); - if (!graph || !dataset) return; - - const clusters = keyBy(dataset.clusters, "key"); - const tags = keyBy(dataset.tags, "key"); - - dataset.nodes.forEach((node) => - graph.addNode(node.key, { - ...node, - ...omit(clusters[node.cluster], "key"), - image: `${process.env.PUBLIC_URL}/images/${tags[node.tag].image}`, - }), - ); - dataset.edges.forEach(([source, target]) => graph.addEdge(source, target, { size: 1 })); - - // Use degrees as node sizes: - const scores = graph.nodes().map((node) => graph.getNodeAttribute(node, "score")); - const minDegree = Math.min(...scores); - const maxDegree = Math.max(...scores); - const MIN_NODE_SIZE = 3; - const MAX_NODE_SIZE = 30; - graph.forEachNode((node) => - graph.setNodeAttribute( - node, - "size", - ((graph.getNodeAttribute(node, "score") - minDegree) / (maxDegree - minDegree)) * - (MAX_NODE_SIZE - MIN_NODE_SIZE) + - MIN_NODE_SIZE, - ), - ); - - return () => graph.clear(); - }, [graph, dataset]); - - /** - * Apply filters to graphology: - */ - useEffect(() => { - const { clusters, tags } = filters; - graph.forEachNode((node, { cluster, tag }) => - graph.setNodeAttribute(node, "hidden", !clusters[cluster] || !tags[tag]), - ); - }, [graph, filters]); - - return <>{children}; -}; - -export default GraphDataController; diff --git a/modules/demo/sigma-server/src/views/GraphEventsController.tsx b/modules/demo/sigma-server/src/views/GraphEventsController.tsx deleted file mode 100644 index 17f443fe6..000000000 --- a/modules/demo/sigma-server/src/views/GraphEventsController.tsx +++ /dev/null @@ -1,42 +0,0 @@ -import { useRegisterEvents, useSigma } from "react-sigma-v2"; -import { FC, useEffect } from "react"; - -function getMouseLayer() { - return document.querySelector(".sigma-mouse"); -} - -const GraphEventsController: FC<{ setHoveredNode: (node: string | null) => void }> = ({ setHoveredNode, children }) => { - const sigma = useSigma(); - const graph = sigma.getGraph(); - const registerEvents = useRegisterEvents(); - - /** - * Initialize here settings that require to know the graph and/or the sigma - * instance: - */ - useEffect(() => { - registerEvents({ - clickNode({ node }) { - if (!graph.getNodeAttribute(node, "hidden")) { - window.open(graph.getNodeAttribute(node, "URL"), "_blank"); - } - }, - enterNode({ node }) { - setHoveredNode(node); - // TODO: Find a better way to get the DOM mouse layer: - const mouseLayer = getMouseLayer(); - if (mouseLayer) mouseLayer.classList.add("mouse-pointer"); - }, - leaveNode() { - setHoveredNode(null); - // TODO: Find a better way to get the DOM mouse layer: - const mouseLayer = getMouseLayer(); - if (mouseLayer) mouseLayer.classList.remove("mouse-pointer"); - }, - }); - }, []); - - return <>{children}; -}; - -export default GraphEventsController; diff --git a/modules/demo/sigma-server/src/views/GraphSettingsController.tsx b/modules/demo/sigma-server/src/views/GraphSettingsController.tsx deleted file mode 100644 index 4e46974d0..000000000 --- a/modules/demo/sigma-server/src/views/GraphSettingsController.tsx +++ /dev/null @@ -1,60 +0,0 @@ -import { useSigma } from "react-sigma-v2"; -import { FC, useEffect } from "react"; - -import { drawHover } from "../canvas-utils"; -import useDebounce from "../use-debounce"; - -const NODE_FADE_COLOR = "#bbb"; -const EDGE_FADE_COLOR = "#eee"; - -const GraphSettingsController: FC<{ hoveredNode: string | null }> = ({ children, hoveredNode }) => { - const sigma = useSigma(); - const graph = sigma.getGraph(); - - // Here we debounce the value to avoid having too much highlights refresh when - // moving the mouse over the graph: - const debouncedHoveredNode = useDebounce(hoveredNode, 40); - - /** - * Initialize here settings that require to know the graph and/or the sigma - * instance: - */ - useEffect(() => { - sigma.setSetting("hoverRenderer", (context, data, settings) => - drawHover(context, { ...sigma.getNodeDisplayData(data.key), ...data }, settings), - ); - }, [sigma, graph]); - - /** - * Update node and edge reducers when a node is hovered, to highlight its - * neighborhood: - */ - useEffect(() => { - const hoveredColor: string = debouncedHoveredNode ? sigma.getNodeDisplayData(debouncedHoveredNode)!.color : ""; - - sigma.setSetting( - "nodeReducer", - debouncedHoveredNode - ? (node, data) => - node === debouncedHoveredNode || - graph.hasEdge(node, debouncedHoveredNode) || - graph.hasEdge(debouncedHoveredNode, node) - ? { ...data, zIndex: 1 } - : { ...data, zIndex: 0, label: "", color: NODE_FADE_COLOR, image: null, highlighted: false } - : null, - ); - sigma.setSetting( - "edgeReducer", - debouncedHoveredNode - ? (edge, data) => - graph.hasExtremity(edge, debouncedHoveredNode) - ? { ...data, color: hoveredColor, size: 4 } - : { ...data, color: EDGE_FADE_COLOR, hidden: true } - : null, - ); - }, [debouncedHoveredNode]); - - return <>{children}; -}; - -export default GraphSettingsController; diff --git a/modules/demo/sigma-server/src/views/GraphTitle.tsx b/modules/demo/sigma-server/src/views/GraphTitle.tsx deleted file mode 100644 index 51373a453..000000000 --- a/modules/demo/sigma-server/src/views/GraphTitle.tsx +++ /dev/null @@ -1,47 +0,0 @@ -import React, { FC, useEffect, useState } from "react"; -import { useSigma } from "react-sigma-v2"; - -import { FiltersState } from "../types"; - -function prettyPercentage(val: number): string { - return (val * 100).toFixed(1) + "%"; -} - -const GraphTitle: FC<{ filters: FiltersState }> = ({ filters }) => { - const sigma = useSigma(); - const graph = sigma.getGraph(); - - const [visibleItems, setVisibleItems] = useState<{ nodes: number; edges: number }>({ nodes: 0, edges: 0 }); - useEffect(() => { - // To ensure the graphology instance has up to data "hidden" values for - // nodes, we wait for next frame before reindexing. This won't matter in the - // UX, because of the visible nodes bar width transition. - requestAnimationFrame(() => { - const index = { nodes: 0, edges: 0 }; - graph.forEachNode((_, { hidden }) => !hidden && index.nodes++); - graph.forEachEdge((_, _2, _3, _4, source, target) => !source.hidden && !target.hidden && index.edges++); - setVisibleItems(index); - }); - }, [filters]); - - return ( -
-

A cartography of Wikipedia pages around data visualization

-

- - {graph.order} node{graph.order > 1 ? "s" : ""}{" "} - {visibleItems.nodes !== graph.order - ? ` (only ${prettyPercentage(visibleItems.nodes / graph.order)} visible)` - : ""} - , {graph.size} edge - {graph.size > 1 ? "s" : ""}{" "} - {visibleItems.edges !== graph.size - ? ` (only ${prettyPercentage(visibleItems.edges / graph.size)} visible)` - : ""} - -

-
- ); -}; - -export default GraphTitle; diff --git a/modules/demo/sigma-server/src/views/Panel.tsx b/modules/demo/sigma-server/src/views/Panel.tsx deleted file mode 100644 index 3485f9191..000000000 --- a/modules/demo/sigma-server/src/views/Panel.tsx +++ /dev/null @@ -1,37 +0,0 @@ -import React, { FC, useEffect, useRef, useState } from "react"; -import { MdExpandLess, MdExpandMore } from "react-icons/md"; -import AnimateHeight from "react-animate-height"; - -const DURATION = 300; - -const Panel: FC<{ title: JSX.Element | string; initiallyDeployed?: boolean }> = ({ - title, - initiallyDeployed, - children, -}) => { - const [isDeployed, setIsDeployed] = useState(initiallyDeployed || false); - const dom = useRef(null); - - useEffect(() => { - if (isDeployed) - setTimeout(() => { - if (dom.current) dom.current.parentElement!.scrollTo({ top: dom.current.offsetTop - 5, behavior: "smooth" }); - }, DURATION); - }, [isDeployed]); - - return ( -
-

- {title}{" "} - -

- - {children} - -
- ); -}; - -export default Panel; diff --git a/modules/demo/sigma-server/src/views/Root.tsx b/modules/demo/sigma-server/src/views/Root.tsx deleted file mode 100644 index a70c0ddcc..000000000 --- a/modules/demo/sigma-server/src/views/Root.tsx +++ /dev/null @@ -1,153 +0,0 @@ -import React, { FC, useEffect, useState } from "react"; -import { SigmaContainer, ZoomControl, FullScreenControl } from "react-sigma-v2"; -import { omit, mapValues, keyBy, constant } from "lodash"; - -import getNodeProgramImage from "sigma/rendering/webgl/programs/node.image"; - -import GraphSettingsController from "./GraphSettingsController"; -import GraphEventsController from "./GraphEventsController"; -import GraphDataController from "./GraphDataController"; -import DescriptionPanel from "./DescriptionPanel"; -import { Dataset, FiltersState } from "../types"; -import ClustersPanel from "./ClustersPanel"; -import SearchField from "./SearchField"; -import drawLabel from "../canvas-utils"; -import GraphTitle from "./GraphTitle"; -import TagsPanel from "./TagsPanel"; - -import "react-sigma-v2/lib/react-sigma-v2.css"; -import { GrClose } from "react-icons/gr"; -import { BiRadioCircleMarked, BiBookContent } from "react-icons/bi"; -import { BsArrowsFullscreen, BsFullscreenExit, BsZoomIn, BsZoomOut } from "react-icons/bs"; - -const Root: FC = () => { - const [showContents, setShowContents] = useState(false); - const [dataReady, setDataReady] = useState(false); - const [dataset, setDataset] = useState(null); - const [filtersState, setFiltersState] = useState({ - clusters: {}, - tags: {}, - }); - const [hoveredNode, setHoveredNode] = useState(null); - - // Load data on mount: - useEffect(() => { - fetch(`${process.env.PUBLIC_URL}/dataset_small.json`) - .then((res) => res.json()) - .then((dataset: Dataset) => { - setDataset(dataset); - setFiltersState({ - clusters: mapValues(keyBy(dataset.clusters, "key"), constant(true)), - tags: mapValues(keyBy(dataset.tags, "key"), constant(true)), - }); - requestAnimationFrame(() => setDataReady(true)); - }); - }, []); - - if (!dataset) return null; - - return ( -
- - - - - - {dataReady && ( - <> -
-
- -
- } - customExitFullScreen={} - /> - } - customZoomOut={} - customZoomCenter={} - /> -
-
-
- -
- -
- - - - setFiltersState((filters) => ({ - ...filters, - clusters, - })) - } - toggleCluster={(cluster) => { - setFiltersState((filters) => ({ - ...filters, - clusters: filters.clusters[cluster] - ? omit(filters.clusters, cluster) - : { ...filters.clusters, [cluster]: true }, - })); - }} - /> - - setFiltersState((filters) => ({ - ...filters, - tags, - })) - } - toggleTag={(tag) => { - setFiltersState((filters) => ({ - ...filters, - tags: filters.tags[tag] ? omit(filters.tags, tag) : { ...filters.tags, [tag]: true }, - })); - }} - /> -
-
- - )} - -
- ); -}; - -export default Root; diff --git a/modules/demo/sigma-server/src/views/SearchField.tsx b/modules/demo/sigma-server/src/views/SearchField.tsx deleted file mode 100644 index 466410305..000000000 --- a/modules/demo/sigma-server/src/views/SearchField.tsx +++ /dev/null @@ -1,102 +0,0 @@ -import React, { KeyboardEvent, ChangeEvent, FC, useEffect, useState } from "react"; -import { useSigma } from "react-sigma-v2"; -import { Attributes } from "graphology-types"; -import { BsSearch } from "react-icons/bs"; - -import { FiltersState } from "../types"; - -/** - * This component is basically a fork from React-sigma-v2's SearchControl - * component, to get some minor adjustments: - * 1. We need to hide hidden nodes from results - * 2. We need custom markup - */ -const SearchField: FC<{ filters: FiltersState }> = ({ filters }) => { - const sigma = useSigma(); - - const [search, setSearch] = useState(""); - const [values, setValues] = useState>([]); - const [selected, setSelected] = useState(null); - - const refreshValues = () => { - const newValues: Array<{ id: string; label: string }> = []; - const lcSearch = search.toLowerCase(); - if (!selected && search.length > 1) { - sigma.getGraph().forEachNode((key: string, attributes: Attributes): void => { - if (!attributes.hidden && attributes.label && attributes.label.toLowerCase().indexOf(lcSearch) === 0) - newValues.push({ id: key, label: attributes.label }); - }); - } - setValues(newValues); - }; - - // Refresh values when search is updated: - useEffect(() => refreshValues(), [search]); - - // Refresh values when filters are updated (but wait a frame first): - useEffect(() => { - requestAnimationFrame(refreshValues); - }, [filters]); - - useEffect(() => { - if (!selected) return; - - sigma.getGraph().setNodeAttribute(selected, "highlighted", true); - const nodeDisplayData = sigma.getNodeDisplayData(selected); - - if (nodeDisplayData) - sigma.getCamera().animate( - { ...nodeDisplayData, ratio: 0.05 }, - { - duration: 600, - }, - ); - - return () => { - sigma.getGraph().setNodeAttribute(selected, "highlighted", false); - }; - }, [selected]); - - const onInputChange = (e: ChangeEvent) => { - const searchString = e.target.value; - const valueItem = values.find((value) => value.label === searchString); - if (valueItem) { - setSearch(valueItem.label); - setValues([]); - setSelected(valueItem.id); - } else { - setSelected(null); - setSearch(searchString); - } - }; - - const onKeyPress = (e: KeyboardEvent) => { - if (e.key === "Enter" && values.length) { - setSearch(values[0].label); - setSelected(values[0].id); - } - }; - - return ( -
- - - - {values.map((value: { id: string; label: string }) => ( - - ))} - -
- ); -}; - -export default SearchField; diff --git a/modules/demo/sigma-server/src/views/TagsPanel.tsx b/modules/demo/sigma-server/src/views/TagsPanel.tsx deleted file mode 100644 index b0b78167d..000000000 --- a/modules/demo/sigma-server/src/views/TagsPanel.tsx +++ /dev/null @@ -1,115 +0,0 @@ -import React, { FC, useEffect, useMemo, useState } from "react"; -import { useSigma } from "react-sigma-v2"; -import { MdCategory } from "react-icons/md"; -import { keyBy, mapValues, sortBy, values } from "lodash"; -import { AiOutlineCheckCircle, AiOutlineCloseCircle } from "react-icons/ai"; - -import { FiltersState, Tag } from "../types"; -import Panel from "./Panel"; - -const TagsPanel: FC<{ - tags: Tag[]; - filters: FiltersState; - toggleTag: (tag: string) => void; - setTags: (tags: Record) => void; -}> = ({ tags, filters, toggleTag, setTags }) => { - const sigma = useSigma(); - const graph = sigma.getGraph(); - - const nodesPerTag = useMemo(() => { - const index: Record = {}; - graph.forEachNode((_, { tag }) => (index[tag] = (index[tag] || 0) + 1)); - return index; - }, []); - - const maxNodesPerTag = useMemo(() => Math.max(...values(nodesPerTag)), [nodesPerTag]); - const visibleTagsCount = useMemo(() => Object.keys(filters.tags).length, [filters]); - - const [visibleNodesPerTag, setVisibleNodesPerTag] = useState>(nodesPerTag); - useEffect(() => { - // To ensure the graphology instance has up to data "hidden" values for - // nodes, we wait for next frame before reindexing. This won't matter in the - // UX, because of the visible nodes bar width transition. - requestAnimationFrame(() => { - const index: Record = {}; - graph.forEachNode((_, { tag, hidden }) => !hidden && (index[tag] = (index[tag] || 0) + 1)); - setVisibleNodesPerTag(index); - }); - }, [filters]); - - const sortedTags = useMemo( - () => sortBy(tags, (tag) => (tag.key === "unknown" ? Infinity : -nodesPerTag[tag.key])), - [tags, nodesPerTag], - ); - - return ( - - Categories - {visibleTagsCount < tags.length ? ( - - {" "} - ({visibleTagsCount} / {tags.length}) - - ) : ( - "" - )} - - } - > -

- Click a category to show/hide related pages from the network. -

-

- {" "} - -

-
    - {sortedTags.map((tag) => { - const nodesCount = nodesPerTag[tag.key]; - const visibleNodesCount = visibleNodesPerTag[tag.key] || 0; - return ( -
  • 1 ? "s" : ""}${ - visibleNodesCount !== nodesCount ? ` (only ${visibleNodesCount} visible)` : "" - }`} - > - toggleTag(tag.key)} - id={`tag-${tag.key}`} - /> -
    • - ); - })} -
- - ); -}; - -export default TagsPanel; diff --git a/modules/demo/sigma-server/tsconfig.json b/modules/demo/sigma-server/tsconfig.json deleted file mode 100644 index a273b0cfc..000000000 --- a/modules/demo/sigma-server/tsconfig.json +++ /dev/null @@ -1,26 +0,0 @@ -{ - "compilerOptions": { - "target": "es5", - "lib": [ - "dom", - "dom.iterable", - "esnext" - ], - "allowJs": true, - "skipLibCheck": true, - "esModuleInterop": true, - "allowSyntheticDefaultImports": true, - "strict": true, - "forceConsistentCasingInFileNames": true, - "noFallthroughCasesInSwitch": true, - "module": "esnext", - "moduleResolution": "node", - "resolveJsonModule": true, - "isolatedModules": true, - "noEmit": true, - "jsx": "react-jsx" - }, - "include": [ - "src" - ] -} diff --git a/modules/demo/sigma.js b/modules/demo/sigma.js new file mode 160000 index 000000000..2fb4cebfc --- /dev/null +++ b/modules/demo/sigma.js @@ -0,0 +1 @@ +Subproject commit 2fb4cebfcdaa27be82d9648835db4e63c268f3af diff --git a/package.json b/package.json index dbc6846c1..af1261428 100644 --- a/package.json +++ b/package.json @@ -74,8 +74,9 @@ "modules/demo/ssr/*", "modules/demo/tfjs/*", "modules/demo/client-server", + "modules/demo/sigma.js", + "modules/demo/sigma.js/examples", "modules/demo/rapids-api-server", - "modules/demo/sigma-server", "modules/demo/viz-app", "modules/demo/sql/*" ], @@ -144,7 +145,8 @@ "**/gl-matrix": "3.3.0", "**/jsdom": "16.6.0", "**/math.gl": "3.5.7", - "**/react-map-gl": "5.3.16" + "**/react-map-gl": "5.3.16", + "**/react-scripts": "5.0.0" }, "release": { "analyzeCommits": "simple-commit-message" diff --git a/yarn.lock b/yarn.lock index e69ab3c96..fabd35e08 100644 --- a/yarn.lock +++ b/yarn.lock @@ -19,6 +19,15 @@ "@jridgewell/gen-mapping" "^0.1.0" "@jridgewell/trace-mapping" "^0.3.9" +"@apideck/better-ajv-errors@^0.3.1": + version "0.3.3" + resolved "https://registry.npmjs.org/@apideck/better-ajv-errors/-/better-ajv-errors-0.3.3.tgz#ab0b1e981e1749bf59736cf7ebe25cfc9f949c15" + integrity sha512-9o+HO2MbJhJHjDYZaDxJmSDckvDpiuItEsrIShV0DXeCshXWRHhqYyU/PKHMkuClOmFnZhRd6wzv4vpDu/dRKg== + dependencies: + json-schema "^0.4.0" + jsonpointer "^5.0.0" + leven "^3.1.0" + "@babel/code-frame@7.12.11": version "7.12.11" resolved "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.12.11.tgz#f4ad435aa263db935b8f10f2c552d23fb716a63f" @@ -26,7 +35,7 @@ dependencies: "@babel/highlight" "^7.10.4" -"@babel/code-frame@^7.0.0", "@babel/code-frame@^7.14.5", "@babel/code-frame@^7.16.7": +"@babel/code-frame@^7.0.0", "@babel/code-frame@^7.10.4", "@babel/code-frame@^7.12.13", "@babel/code-frame@^7.14.5", "@babel/code-frame@^7.16.0", "@babel/code-frame@^7.16.7", "@babel/code-frame@^7.8.3": version "7.16.7" resolved "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.16.7.tgz#44416b6bd7624b998f5b1af5d470856c40138789" integrity sha512-iAXqUn8IIeBTNd72xsFlgaXHkMBMt6y4HJp1tIaK465CWLT/fG1aqB7ykr95gHHmlBdGbFeWWfyB4NJJ0nmeIg== @@ -85,6 +94,27 @@ json5 "^2.1.2" semver "^6.3.0" +"@babel/core@^7.11.1", "@babel/core@^7.15.5", "@babel/core@^7.16.0", "@babel/core@^7.16.5", "@babel/core@^7.7.2", "@babel/core@^7.8.0": + version "7.18.0" + resolved "https://registry.npmjs.org/@babel/core/-/core-7.18.0.tgz#c58d04d7c6fbfb58ea7681e2b9145cfb62726756" + integrity sha512-Xyw74OlJwDijToNi0+6BBI5mLLR5+5R3bcSH80LXzjzEGEUlvNzujEE71BaD/ApEZHAvFI/Mlmp4M5lIkdeeWw== + dependencies: + "@ampproject/remapping" "^2.1.0" + "@babel/code-frame" "^7.16.7" + "@babel/generator" "^7.18.0" + "@babel/helper-compilation-targets" "^7.17.10" + "@babel/helper-module-transforms" "^7.18.0" + "@babel/helpers" "^7.18.0" + "@babel/parser" "^7.18.0" + "@babel/template" "^7.16.7" + "@babel/traverse" "^7.18.0" + "@babel/types" "^7.18.0" + convert-source-map "^1.7.0" + debug "^4.1.0" + gensync "^1.0.0-beta.2" + json5 "^2.2.1" + semver "^6.3.0" + "@babel/core@^7.5.5": version "7.17.12" resolved "https://registry.npmjs.org/@babel/core/-/core-7.17.12.tgz#b4eb2d7ebc3449b062381644c93050db545b70ee" @@ -106,6 +136,15 @@ json5 "^2.2.1" semver "^6.3.0" +"@babel/eslint-parser@^7.16.3": + version "7.17.0" + resolved "https://registry.npmjs.org/@babel/eslint-parser/-/eslint-parser-7.17.0.tgz#eabb24ad9f0afa80e5849f8240d0e5facc2d90d6" + integrity sha512-PUEJ7ZBXbRkbq3qqM/jZ2nIuakUBqCYc7Qf52Lj7dlZ6zERnqisdHioL0l4wwQZnmskMeasqUNzLBFKs3nylXA== + dependencies: + eslint-scope "^5.1.1" + eslint-visitor-keys "^2.1.0" + semver "^6.3.0" + "@babel/generator@^7.15.4", "@babel/generator@^7.17.0": version "7.17.0" resolved "https://registry.npmjs.org/@babel/generator/-/generator-7.17.0.tgz#7bd890ba706cd86d3e2f727322346ffdbf98f65e" @@ -124,6 +163,15 @@ "@jridgewell/gen-mapping" "^0.3.0" jsesc "^2.5.1" +"@babel/generator@^7.18.0", "@babel/generator@^7.7.2": + version "7.18.0" + resolved "https://registry.npmjs.org/@babel/generator/-/generator-7.18.0.tgz#46d28e8a18fc737b028efb25ab105d74473af43f" + integrity sha512-81YO9gGx6voPXlvYdZBliFXAZU8vZ9AZ6z+CjlmcnaeOcYSFbMTpdeDUO9xD9dh/68Vq03I8ZspfUTPfitcDHg== + dependencies: + "@babel/types" "^7.18.0" + "@jridgewell/gen-mapping" "^0.3.0" + jsesc "^2.5.1" + "@babel/helper-annotate-as-pure@^7.16.7": version "7.16.7" resolved "https://registry.npmjs.org/@babel/helper-annotate-as-pure/-/helper-annotate-as-pure-7.16.7.tgz#bb2339a7534a9c128e3102024c60760a3a7f3862" @@ -172,6 +220,19 @@ "@babel/helper-replace-supers" "^7.16.7" "@babel/helper-split-export-declaration" "^7.16.7" +"@babel/helper-create-class-features-plugin@^7.17.12", "@babel/helper-create-class-features-plugin@^7.18.0": + version "7.18.0" + resolved "https://registry.npmjs.org/@babel/helper-create-class-features-plugin/-/helper-create-class-features-plugin-7.18.0.tgz#fac430912606331cb075ea8d82f9a4c145a4da19" + integrity sha512-Kh8zTGR9de3J63e5nS0rQUdRs/kbtwoeQQ0sriS0lItjC96u8XXZN6lKpuyWd2coKSU13py/y+LTmThLuVX0Pg== + dependencies: + "@babel/helper-annotate-as-pure" "^7.16.7" + "@babel/helper-environment-visitor" "^7.16.7" + "@babel/helper-function-name" "^7.17.9" + 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resolved "https://registry.npmjs.org/@babel/helper-environment-visitor/-/helper-environment-visitor-7.16.7.tgz#ff484094a839bde9d89cd63cba017d7aae80ecd7" @@ -246,7 +329,14 @@ dependencies: "@babel/types" "^7.16.7" -"@babel/helper-module-imports@^7.0.0", "@babel/helper-module-imports@^7.12.13", "@babel/helper-module-imports@^7.16.7": +"@babel/helper-member-expression-to-functions@^7.17.7": + version "7.17.7" + resolved "https://registry.npmjs.org/@babel/helper-member-expression-to-functions/-/helper-member-expression-to-functions-7.17.7.tgz#a34013b57d8542a8c4ff8ba3f747c02452a4d8c4" + integrity sha512-thxXgnQ8qQ11W2wVUObIqDL4p148VMxkt5T/qpN5k2fboRyzFGFmKsTGViquyM5QHKUy48OZoca8kw4ajaDPyw== + dependencies: + "@babel/types" "^7.17.0" + +"@babel/helper-module-imports@^7.0.0", "@babel/helper-module-imports@^7.10.4", "@babel/helper-module-imports@^7.12.13", "@babel/helper-module-imports@^7.16.7": version "7.16.7" resolved 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"@babel/plugin-syntax-export-namespace-from" "^7.8.3" +"@babel/plugin-proposal-export-namespace-from@^7.17.12": + version "7.17.12" + resolved "https://registry.npmjs.org/@babel/plugin-proposal-export-namespace-from/-/plugin-proposal-export-namespace-from-7.17.12.tgz#b22864ccd662db9606edb2287ea5fd1709f05378" + integrity sha512-j7Ye5EWdwoXOpRmo5QmRyHPsDIe6+u70ZYZrd7uz+ebPYFKfRcLcNu3Ro0vOlJ5zuv8rU7xa+GttNiRzX56snQ== + dependencies: + "@babel/helper-plugin-utils" "^7.17.12" + "@babel/plugin-syntax-export-namespace-from" "^7.8.3" + "@babel/plugin-proposal-json-strings@^7.14.5": version "7.16.7" resolved "https://registry.npmjs.org/@babel/plugin-proposal-json-strings/-/plugin-proposal-json-strings-7.16.7.tgz#9732cb1d17d9a2626a08c5be25186c195b6fa6e8" @@ -462,6 +642,14 @@ "@babel/helper-plugin-utils" "^7.16.7" "@babel/plugin-syntax-json-strings" "^7.8.3" +"@babel/plugin-proposal-json-strings@^7.17.12": + version "7.17.12" + resolved 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resolved "https://registry.npmjs.org/@babel/plugin-proposal-nullish-coalescing-operator/-/plugin-proposal-nullish-coalescing-operator-7.17.12.tgz#1e93079bbc2cbc756f6db6a1925157c4a92b94be" + integrity sha512-ws/g3FSGVzv+VH86+QvgtuJL/kR67xaEIF2x0iPqdDfYW6ra6JF3lKVBkWynRLcNtIC1oCTfDRVxmm2mKzy+ag== + dependencies: + "@babel/helper-plugin-utils" "^7.17.12" + "@babel/plugin-syntax-nullish-coalescing-operator" "^7.8.3" + +"@babel/plugin-proposal-numeric-separator@^7.14.5", "@babel/plugin-proposal-numeric-separator@^7.16.0", "@babel/plugin-proposal-numeric-separator@^7.16.7": version "7.16.7" resolved "https://registry.npmjs.org/@babel/plugin-proposal-numeric-separator/-/plugin-proposal-numeric-separator-7.16.7.tgz#d6b69f4af63fb38b6ca2558442a7fb191236eba9" integrity sha512-vQgPMknOIgiuVqbokToyXbkY/OmmjAzr/0lhSIbG/KmnzXPGwW/AdhdKpi+O4X/VkWiWjnkKOBiqJrTaC98VKw== @@ -497,6 +701,17 @@ "@babel/plugin-syntax-object-rest-spread" "^7.8.3" "@babel/plugin-transform-parameters" "^7.16.7" +"@babel/plugin-proposal-object-rest-spread@^7.18.0": + version "7.18.0" + resolved "https://registry.npmjs.org/@babel/plugin-proposal-object-rest-spread/-/plugin-proposal-object-rest-spread-7.18.0.tgz#79f2390c892ba2a68ec112eb0d895cfbd11155e8" + integrity sha512-nbTv371eTrFabDfHLElkn9oyf9VG+VKK6WMzhY2o4eHKaG19BToD9947zzGMO6I/Irstx9d8CwX6njPNIAR/yw== + dependencies: + "@babel/compat-data" "^7.17.10" + "@babel/helper-compilation-targets" "^7.17.10" + "@babel/helper-plugin-utils" "^7.17.12" + "@babel/plugin-syntax-object-rest-spread" "^7.8.3" + "@babel/plugin-transform-parameters" "^7.17.12" + "@babel/plugin-proposal-object-rest-spread@^7.5.5": version "7.17.12" resolved "https://registry.npmjs.org/@babel/plugin-proposal-object-rest-spread/-/plugin-proposal-object-rest-spread-7.17.12.tgz#f94a91715a7f2f8cfb3c06af820c776440bc0148" @@ -508,7 +723,7 @@ "@babel/plugin-syntax-object-rest-spread" "^7.8.3" "@babel/plugin-transform-parameters" "^7.17.12" -"@babel/plugin-proposal-optional-catch-binding@^7.14.5": +"@babel/plugin-proposal-optional-catch-binding@^7.14.5", "@babel/plugin-proposal-optional-catch-binding@^7.16.7": version "7.16.7" resolved "https://registry.npmjs.org/@babel/plugin-proposal-optional-catch-binding/-/plugin-proposal-optional-catch-binding-7.16.7.tgz#c623a430674ffc4ab732fd0a0ae7722b67cb74cf" integrity sha512-eMOH/L4OvWSZAE1VkHbr1vckLG1WUcHGJSLqqQwl2GaUqG6QjddvrOaTUMNYiv77H5IKPMZ9U9P7EaHwvAShfA== @@ -525,6 +740,15 @@ "@babel/helper-skip-transparent-expression-wrappers" "^7.16.0" "@babel/plugin-syntax-optional-chaining" "^7.8.3" +"@babel/plugin-proposal-optional-chaining@^7.16.0", "@babel/plugin-proposal-optional-chaining@^7.17.12": + version "7.17.12" + resolved "https://registry.npmjs.org/@babel/plugin-proposal-optional-chaining/-/plugin-proposal-optional-chaining-7.17.12.tgz#f96949e9bacace3a9066323a5cf90cfb9de67174" + integrity 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"@babel/helper-annotate-as-pure" "^7.16.7" + "@babel/helper-create-class-features-plugin" "^7.17.12" + "@babel/helper-plugin-utils" "^7.17.12" + "@babel/plugin-syntax-private-property-in-object" "^7.14.5" + "@babel/plugin-proposal-unicode-property-regex@^7.14.5", "@babel/plugin-proposal-unicode-property-regex@^7.4.4": version "7.16.7" resolved "https://registry.npmjs.org/@babel/plugin-proposal-unicode-property-regex/-/plugin-proposal-unicode-property-regex-7.16.7.tgz#635d18eb10c6214210ffc5ff4932552de08188a2" @@ -551,6 +793,14 @@ "@babel/helper-create-regexp-features-plugin" "^7.16.7" "@babel/helper-plugin-utils" "^7.16.7" +"@babel/plugin-proposal-unicode-property-regex@^7.17.12": + version "7.17.12" + resolved "https://registry.npmjs.org/@babel/plugin-proposal-unicode-property-regex/-/plugin-proposal-unicode-property-regex-7.17.12.tgz#3dbd7a67bd7f94c8238b394da112d86aaf32ad4d" + integrity sha512-Wb9qLjXf3ZazqXA7IvI7ozqRIXIGPtSo+L5coFmEkhTQK18ao4UDDD0zdTGAarmbLj2urpRwrc6893cu5Bfh0A== + dependencies: + "@babel/helper-create-regexp-features-plugin" "^7.17.12" + "@babel/helper-plugin-utils" "^7.17.12" + "@babel/plugin-syntax-async-generators@^7.8.4": version "7.8.4" resolved "https://registry.npmjs.org/@babel/plugin-syntax-async-generators/-/plugin-syntax-async-generators-7.8.4.tgz#a983fb1aeb2ec3f6ed042a210f640e90e786fe0d" @@ -579,6 +829,13 @@ dependencies: "@babel/helper-plugin-utils" "^7.14.5" +"@babel/plugin-syntax-decorators@^7.17.12": + version "7.17.12" + resolved "https://registry.npmjs.org/@babel/plugin-syntax-decorators/-/plugin-syntax-decorators-7.17.12.tgz#02e8f678602f0af8222235271efea945cfdb018a" + integrity sha512-D1Hz0qtGTza8K2xGyEdVNCYLdVHukAcbQr4K3/s6r/esadyEriZovpJimQOpu8ju4/jV8dW/1xdaE0UpDroidw== + dependencies: + "@babel/helper-plugin-utils" "^7.17.12" + "@babel/plugin-syntax-dynamic-import@^7.8.3": version "7.8.3" resolved 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"@babel/plugin-syntax-import-meta@^7.8.3": version "7.10.4" resolved "https://registry.npmjs.org/@babel/plugin-syntax-import-meta/-/plugin-syntax-import-meta-7.10.4.tgz#ee601348c370fa334d2207be158777496521fd51" @@ -684,6 +955,13 @@ dependencies: "@babel/helper-plugin-utils" "^7.14.5" +"@babel/plugin-syntax-typescript@^7.17.12", "@babel/plugin-syntax-typescript@^7.7.2": + version "7.17.12" + resolved "https://registry.npmjs.org/@babel/plugin-syntax-typescript/-/plugin-syntax-typescript-7.17.12.tgz#b54fc3be6de734a56b87508f99d6428b5b605a7b" + integrity sha512-TYY0SXFiO31YXtNg3HtFwNJHjLsAyIIhAhNWkQ5whPPS7HWUFlg9z0Ta4qAQNjQbP1wsSt/oKkmZ/4/WWdMUpw== + dependencies: + "@babel/helper-plugin-utils" "^7.17.12" + "@babel/plugin-transform-arrow-functions@^7.14.5": version "7.16.7" resolved "https://registry.npmjs.org/@babel/plugin-transform-arrow-functions/-/plugin-transform-arrow-functions-7.16.7.tgz#44125e653d94b98db76369de9c396dc14bef4154" @@ -691,6 +969,13 @@ dependencies: "@babel/helper-plugin-utils" "^7.16.7" +"@babel/plugin-transform-arrow-functions@^7.17.12": + version "7.17.12" + resolved "https://registry.npmjs.org/@babel/plugin-transform-arrow-functions/-/plugin-transform-arrow-functions-7.17.12.tgz#dddd783b473b1b1537ef46423e3944ff24898c45" + integrity sha512-PHln3CNi/49V+mza4xMwrg+WGYevSF1oaiXaC2EQfdp4HWlSjRsrDXWJiQBKpP7749u6vQ9mcry2uuFOv5CXvA== + dependencies: + "@babel/helper-plugin-utils" "^7.17.12" + "@babel/plugin-transform-async-to-generator@^7.14.5": version "7.16.8" resolved "https://registry.npmjs.org/@babel/plugin-transform-async-to-generator/-/plugin-transform-async-to-generator-7.16.8.tgz#b83dff4b970cf41f1b819f8b49cc0cfbaa53a808" @@ -700,7 +985,16 @@ "@babel/helper-plugin-utils" "^7.16.7" "@babel/helper-remap-async-to-generator" "^7.16.8" -"@babel/plugin-transform-block-scoped-functions@^7.14.5": +"@babel/plugin-transform-async-to-generator@^7.17.12": + version "7.17.12" + resolved 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resolved "https://registry.npmjs.org/@babel/plugin-transform-block-scoping/-/plugin-transform-block-scoping-7.17.12.tgz#68fc3c4b3bb7dfd809d97b7ed19a584052a2725c" + integrity sha512-jw8XW/B1i7Lqwqj2CbrViPcZijSxfguBWZP2aN59NHgxUyO/OcO1mfdCxH13QhN5LbWhPkX+f+brKGhZTiqtZQ== + dependencies: + "@babel/helper-plugin-utils" "^7.17.12" + "@babel/plugin-transform-classes@^7.15.4": version "7.16.7" resolved "https://registry.npmjs.org/@babel/plugin-transform-classes/-/plugin-transform-classes-7.16.7.tgz#8f4b9562850cd973de3b498f1218796eb181ce00" @@ -728,6 +1029,20 @@ "@babel/helper-split-export-declaration" "^7.16.7" globals "^11.1.0" +"@babel/plugin-transform-classes@^7.17.12": + version "7.17.12" + resolved "https://registry.npmjs.org/@babel/plugin-transform-classes/-/plugin-transform-classes-7.17.12.tgz#da889e89a4d38375eeb24985218edeab93af4f29" + integrity sha512-cvO7lc7pZat6BsvH6l/EGaI8zpl8paICaoGk+7x7guvtfak/TbIf66nYmJOH13EuG0H+Xx3M+9LQDtSvZFKXKw== + dependencies: + 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sha512-a7XINeplB5cQUWMg1E/GI1tFz3LfK021IjV1rj1ypE+R7jHm+pIHmHl25VNkZxtx9uuYp7ThGk8fur1HHG7PgQ== + dependencies: + "@babel/helper-plugin-utils" "^7.17.12" + "@babel/plugin-transform-destructuring@^7.14.7": version "7.16.7" resolved "https://registry.npmjs.org/@babel/plugin-transform-destructuring/-/plugin-transform-destructuring-7.16.7.tgz#ca9588ae2d63978a4c29d3f33282d8603f618e23" @@ -742,6 +1064,13 @@ dependencies: "@babel/helper-plugin-utils" "^7.16.7" +"@babel/plugin-transform-destructuring@^7.18.0": + version "7.18.0" + resolved "https://registry.npmjs.org/@babel/plugin-transform-destructuring/-/plugin-transform-destructuring-7.18.0.tgz#dc4f92587e291b4daa78aa20cc2d7a63aa11e858" + integrity sha512-Mo69klS79z6KEfrLg/1WkmVnB8javh75HX4pi2btjvlIoasuxilEyjtsQW6XPrubNd7AQy0MMaNIaQE4e7+PQw== + dependencies: + "@babel/helper-plugin-utils" "^7.17.12" + "@babel/plugin-transform-destructuring@^7.5.0": version "7.17.12" resolved "https://registry.npmjs.org/@babel/plugin-transform-destructuring/-/plugin-transform-destructuring-7.17.12.tgz#0861d61e75e2401aca30f2570d46dfc85caacf35" @@ -749,7 +1078,7 @@ dependencies: "@babel/helper-plugin-utils" "^7.17.12" -"@babel/plugin-transform-dotall-regex@^7.14.5", "@babel/plugin-transform-dotall-regex@^7.4.4": +"@babel/plugin-transform-dotall-regex@^7.14.5", "@babel/plugin-transform-dotall-regex@^7.16.7", "@babel/plugin-transform-dotall-regex@^7.4.4": version "7.16.7" resolved "https://registry.npmjs.org/@babel/plugin-transform-dotall-regex/-/plugin-transform-dotall-regex-7.16.7.tgz#6b2d67686fab15fb6a7fd4bd895d5982cfc81241" integrity sha512-Lyttaao2SjZF6Pf4vk1dVKv8YypMpomAbygW+mU5cYP3S5cWTfCJjG8xV6CFdzGFlfWK81IjL9viiTvpb6G7gQ== @@ -764,7 +1093,14 @@ dependencies: "@babel/helper-plugin-utils" "^7.16.7" -"@babel/plugin-transform-exponentiation-operator@^7.14.5": +"@babel/plugin-transform-duplicate-keys@^7.17.12": + version "7.17.12" + resolved 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sha512-76lTwYaCxw8ldT7tNmye4LLwSoKDbRCBzu6n/DcK/P3FOR29+38CIIaVIZfwol9By8W/QHORYEnYSLuvcQKrsg== + dependencies: + "@babel/helper-plugin-utils" "^7.17.12" + +"@babel/plugin-transform-function-name@^7.14.5", "@babel/plugin-transform-function-name@^7.16.7": version "7.16.7" resolved "https://registry.npmjs.org/@babel/plugin-transform-function-name/-/plugin-transform-function-name-7.16.7.tgz#5ab34375c64d61d083d7d2f05c38d90b97ec65cf" integrity sha512-SU/C68YVwTRxqWj5kgsbKINakGag0KTgq9f2iZEXdStoAbOzLHEBRYzImmA6yFo8YZhJVflvXmIHUO7GWHmxxA== @@ -795,7 +1146,14 @@ dependencies: "@babel/helper-plugin-utils" "^7.16.7" -"@babel/plugin-transform-member-expression-literals@^7.14.5": +"@babel/plugin-transform-literals@^7.17.12": + version "7.17.12" + resolved "https://registry.npmjs.org/@babel/plugin-transform-literals/-/plugin-transform-literals-7.17.12.tgz#97131fbc6bbb261487105b4b3edbf9ebf9c830ae" + integrity 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sha512-h8FjOlYmdZwl7Xm2Ug4iX2j7Qy63NANI+NQVWQzv6r25fqgg7k2dZl03p95kvqNclglHs4FZ+isv4p1uXMA+QA== + dependencies: + "@babel/helper-module-transforms" "^7.18.0" + "@babel/helper-plugin-utils" "^7.17.12" + babel-plugin-dynamic-import-node "^2.3.3" + "@babel/plugin-transform-modules-commonjs@^7.15.4": version "7.16.8" resolved "https://registry.npmjs.org/@babel/plugin-transform-modules-commonjs/-/plugin-transform-modules-commonjs-7.16.8.tgz#cdee19aae887b16b9d331009aa9a219af7c86afe" @@ -821,6 +1188,16 @@ "@babel/helper-simple-access" "^7.16.7" babel-plugin-dynamic-import-node "^2.3.3" +"@babel/plugin-transform-modules-commonjs@^7.18.0": + version "7.18.0" + resolved "https://registry.npmjs.org/@babel/plugin-transform-modules-commonjs/-/plugin-transform-modules-commonjs-7.18.0.tgz#3be575e19fbd273d42adbc84566b1fad3582b3db" + integrity sha512-cCeR0VZWtfxWS4YueAK2qtHtBPJRSaJcMlbS8jhSIm/A3E2Kpro4W1Dn4cqJtp59dtWfXjQwK7SPKF8ghs7rlw== + dependencies: + "@babel/helper-module-transforms" "^7.18.0" + "@babel/helper-plugin-utils" "^7.17.12" + "@babel/helper-simple-access" "^7.17.7" + babel-plugin-dynamic-import-node "^2.3.3" + "@babel/plugin-transform-modules-systemjs@^7.15.4": version "7.16.7" resolved "https://registry.npmjs.org/@babel/plugin-transform-modules-systemjs/-/plugin-transform-modules-systemjs-7.16.7.tgz#887cefaef88e684d29558c2b13ee0563e287c2d7" @@ -832,6 +1209,17 @@ "@babel/helper-validator-identifier" "^7.16.7" babel-plugin-dynamic-import-node "^2.3.3" +"@babel/plugin-transform-modules-systemjs@^7.18.0": + version "7.18.0" + resolved "https://registry.npmjs.org/@babel/plugin-transform-modules-systemjs/-/plugin-transform-modules-systemjs-7.18.0.tgz#50ecdb43de97c8483824402f7125edb94cddb09a" + integrity sha512-vwKpxdHnlM5tIrRt/eA0bzfbi7gUBLN08vLu38np1nZevlPySRe6yvuATJB5F/WPJ+ur4OXwpVYq9+BsxqAQuQ== + dependencies: + "@babel/helper-hoist-variables" "^7.16.7" + "@babel/helper-module-transforms" "^7.18.0" + "@babel/helper-plugin-utils" "^7.17.12" + "@babel/helper-validator-identifier" "^7.16.7" + babel-plugin-dynamic-import-node "^2.3.3" + "@babel/plugin-transform-modules-umd@^7.14.5": version "7.16.7" resolved "https://registry.npmjs.org/@babel/plugin-transform-modules-umd/-/plugin-transform-modules-umd-7.16.7.tgz#23dad479fa585283dbd22215bff12719171e7618" @@ -840,6 +1228,14 @@ "@babel/helper-module-transforms" "^7.16.7" "@babel/helper-plugin-utils" "^7.16.7" +"@babel/plugin-transform-modules-umd@^7.18.0": + version "7.18.0" + resolved "https://registry.npmjs.org/@babel/plugin-transform-modules-umd/-/plugin-transform-modules-umd-7.18.0.tgz#56aac64a2c2a1922341129a4597d1fd5c3ff020f" + integrity sha512-d/zZ8I3BWli1tmROLxXLc9A6YXvGK8egMxHp+E/rRwMh1Kip0AP77VwZae3snEJ33iiWwvNv2+UIIhfalqhzZA== + dependencies: + "@babel/helper-module-transforms" "^7.18.0" + "@babel/helper-plugin-utils" "^7.17.12" + "@babel/plugin-transform-named-capturing-groups-regex@^7.14.9": version "7.16.8" resolved 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@@ -854,7 +1258,14 @@ dependencies: "@babel/helper-plugin-utils" "^7.16.7" -"@babel/plugin-transform-object-super@^7.14.5": +"@babel/plugin-transform-new-target@^7.17.12": + version "7.17.12" + resolved "https://registry.npmjs.org/@babel/plugin-transform-new-target/-/plugin-transform-new-target-7.17.12.tgz#10842cd605a620944e81ea6060e9e65c265742e3" + integrity sha512-CaOtzk2fDYisbjAD4Sd1MTKGVIpRtx9bWLyj24Y/k6p4s4gQ3CqDGJauFJxt8M/LEx003d0i3klVqnN73qvK3w== + dependencies: + "@babel/helper-plugin-utils" "^7.17.12" + +"@babel/plugin-transform-object-super@^7.14.5", "@babel/plugin-transform-object-super@^7.16.7": version "7.16.7" resolved "https://registry.npmjs.org/@babel/plugin-transform-object-super/-/plugin-transform-object-super-7.16.7.tgz#ac359cf8d32cf4354d27a46867999490b6c32a94" integrity sha512-14J1feiQVWaGvRxj2WjyMuXS2jsBkgB3MdSN5HuC2G5nRspa5RK9COcs82Pwy5BuGcjb+fYaUj94mYcOj7rCvw== @@ -876,21 +1287,28 @@ dependencies: "@babel/helper-plugin-utils" "^7.17.12" 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"@humanwhocodes/object-schema" "^1.2.1" + debug "^4.1.1" + minimatch "^3.0.4" + +"@humanwhocodes/object-schema@^1.2.1": + version "1.2.1" + resolved "https://registry.npmjs.org/@humanwhocodes/object-schema/-/object-schema-1.2.1.tgz#b520529ec21d8e5945a1851dfd1c32e94e39ff45" + integrity sha512-ZnQMnLV4e7hDlUvw8H+U8ASL02SS2Gn6+9Ac3wGGLIe7+je2AeAOxPY+izIPJDfFDb7eDjev0Us8MO1iFRN8hA== + "@isaacs/import-jsx@^4.0.1": version "4.0.1" resolved "https://registry.npmjs.org/@isaacs/import-jsx/-/import-jsx-4.0.1.tgz#493cab5fc543a0703dba7c3f5947d6499028a169" @@ -1582,6 +2362,30 @@ jest-util "^26.6.2" slash "^3.0.0" +"@jest/console@^27.5.1": + version "27.5.1" + resolved "https://registry.npmjs.org/@jest/console/-/console-27.5.1.tgz#260fe7239602fe5130a94f1aa386eff54b014bba" + integrity sha512-kZ/tNpS3NXn0mlXXXPNuDZnb4c0oZ20r4K5eemM2k30ZC3G0T02nXUvyhf5YdbXWHPEJLc9qGLxEZ216MdL+Zg== + dependencies: + "@jest/types" "^27.5.1" + "@types/node" "*" + chalk "^4.0.0" + jest-message-util "^27.5.1" + jest-util 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"https://registry.npmjs.org/@jest/environment/-/environment-27.5.1.tgz#d7425820511fe7158abbecc010140c3fd3be9c74" + integrity sha512-/WQjhPJe3/ghaol/4Bq480JKXV/Rfw8nQdN7f41fM8VDHLcxKXou6QyXAh3EFr9/bVG3x74z1NWDkP87EiY8gA== + dependencies: + "@jest/fake-timers" "^27.5.1" + "@jest/types" "^27.5.1" + "@types/node" "*" + jest-mock "^27.5.1" + "@jest/fake-timers@^26.6.2": version "26.6.2" resolved "https://registry.npmjs.org/@jest/fake-timers/-/fake-timers-26.6.2.tgz#459c329bcf70cee4af4d7e3f3e67848123535aad" @@ -1638,6 +2486,18 @@ jest-mock "^26.6.2" jest-util "^26.6.2" +"@jest/fake-timers@^27.5.1": + version "27.5.1" + resolved "https://registry.npmjs.org/@jest/fake-timers/-/fake-timers-27.5.1.tgz#76979745ce0579c8a94a4678af7a748eda8ada74" + integrity sha512-/aPowoolwa07k7/oM3aASneNeBGCmGQsc3ugN4u6s4C/+s5M64MFo/+djTdiwcbQlRfFElGuDXWzaWj6QgKObQ== + dependencies: + "@jest/types" "^27.5.1" + "@sinonjs/fake-timers" "^8.0.1" + "@types/node" "*" + jest-message-util "^27.5.1" + jest-mock "^27.5.1" + jest-util "^27.5.1" + "@jest/globals@^26.6.2": version "26.6.2" resolved "https://registry.npmjs.org/@jest/globals/-/globals-26.6.2.tgz#5b613b78a1aa2655ae908eba638cc96a20df720a" @@ -1647,6 +2507,15 @@ "@jest/types" "^26.6.2" expect "^26.6.2" +"@jest/globals@^27.5.1": + version "27.5.1" + resolved "https://registry.npmjs.org/@jest/globals/-/globals-27.5.1.tgz#7ac06ce57ab966566c7963431cef458434601b2b" + integrity sha512-ZEJNB41OBQQgGzgyInAv0UUfDDj3upmHydjieSxFvTRuZElrx7tXg/uVQ5hYVEwiXs3+aMsAeEc9X7xiSKCm4Q== + dependencies: + "@jest/environment" "^27.5.1" + "@jest/types" "^27.5.1" + expect "^27.5.1" + "@jest/reporters@^26.6.2": version "26.6.2" resolved "https://registry.npmjs.org/@jest/reporters/-/reporters-26.6.2.tgz#1f518b99637a5f18307bd3ecf9275f6882a667f6" @@ -1679,6 +2548,44 @@ optionalDependencies: node-notifier "^8.0.0" +"@jest/reporters@^27.5.1": + version "27.5.1" + resolved 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"^21.0.0" yargs@^3.6.0: version "3.32.0" @@ -15653,6 +22107,14 @@ yargs@^3.6.0: window-size "^0.1.4" y18n "^3.2.0" +yauzl@^2.10.0: + version "2.10.0" + resolved "https://registry.npmjs.org/yauzl/-/yauzl-2.10.0.tgz#c7eb17c93e112cb1086fa6d8e51fb0667b79a5f9" + integrity sha1-x+sXyT4RLLEIb6bY5R+wZnt5pfk= + dependencies: + buffer-crc32 "~0.2.3" + fd-slicer "~1.1.0" + yeast@0.1.2: version "0.1.2" resolved "https://registry.npmjs.org/yeast/-/yeast-0.1.2.tgz#008e06d8094320c372dbc2f8ed76a0ca6c8ac419" From ea7100d4b30278e141ac7b9a241655b6a33651cb Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Wed, 25 May 2022 11:57:21 -0500 Subject: [PATCH 24/68] Now feeding tables for demo data for sigma.js --- .../routes/graphology/index.js | 89 ++++++++++++++++++- .../test/plugins/support.test.js | 12 +-- .../demo/rapids-api-server/util/gpu_cache.js | 66 +++++++++++--- modules/demo/sigma.js | 2 +- 4 files changed, 149 insertions(+), 20 deletions(-) diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index 3c20e80af..084bf4fa2 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -36,6 +36,11 @@ module.exports = async function(fastify, opts) { filename: 'A URI to a graphology json dataset file.', returns: 'Result OK/Not Found/Fail' }, + read_large_demo: { + filename: + 'A URI to a graphology json dataset file matching the examples/large-demos spec.', + returns: 'Result OK/Not Found/Fail' + }, list_tables: {returns: 'An object containing graphology related datasets resident on GPU memory.'}, @@ -48,6 +53,70 @@ module.exports = async function(fastify, opts) { } }); + fastify.route({ + method: 'GET', + url: '/read_large_demo', + schema: { + querystring: {filename: {type: 'string'}, 'rootkeys': {type: 'array'}}, + + response: { + 200: { + type: 'object', + properties: + {success: {type: 'boolean'}, message: {type: 'string'}, params: {type: 'string'}} + } + } + }, + handler: async (request, reply) => { + // load the file via read_text + // is the file local or remote? + let message = 'Unknown error'; + let result = {'params': JSON.stringify(request.query), success: false, message: message}; + + console.log(result); + if (request.query.filename.search('http') != -1) { + message = 'Remote files not supported yet.' + console.log(result); + } else { + message = 'File is not remote'; + // does the file exist? + const path = Path.join(__dirname, request.query.filename); + console.log('Does the file exist?'); + try { + const stats = await Stat(path); + if (stats == null) { + message = 'File does not exist at ' + path; + console.log(message); + result.message = message; + reply.code(200).send(result); + } else { + // did the file read? + message = 'File is available'; + console.log(message); + result.success = true; + message = 'Successfully parsed json file onto GPU.'; + result.message = message; + try { + const graphology = gpu_cache.readLargeGraphDemo(path); + gpu_cache.setDataframe('nodes', graphology['nodes']); + gpu_cache.setDataframe('edges', graphology['edges']); + gpu_cache.setDataframe('options', graphology['options']); + reply.code(200).send(result); + } catch (e) { + message = 'Exception loading dataset onto gpu.'; + result.message = message; + reply.code(500).send(result); + } + } + } catch (e) { + message = 'Exception reading file.'; + result.message = e; + reply.code(500).send(result); + }; + } + } + }); + fastify.route({ method: 'GET', url: '/read_json', @@ -112,7 +181,25 @@ module.exports = async function(fastify, opts) { url: '/get_column/:table/:column', schema: {querystring: {table: {type: 'string'}, 'column': {type: 'string'}}}, handler: async (request, reply) => { - let message = 'Not Implemented'; + let message = 'Error'; + let result = {'params': JSON.stringify(request.params), success: false, message: message}; + const table = gpu_cache.getDataframe(request.params.table); + if (table == undefined) { + result.message = 'Table not found'; + reply.code(404).send(result); + } else { + const writer = RecordBatchStreamWriter.writeAll(table.toArrow()); + reply.code(200).send(writer.toNodeStream()); + } + } + }); + + fastify.route({ + method: 'GET', + url: '/get_table/:table', + schema: {querystring: {table: {type: 'string'}}}, + handler: async (request, reply) => { + let message = 'Error'; let result = {'params': JSON.stringify(request.params), success: false, message: message}; const table = gpu_cache.getDataframe(request.params.table); if (table == undefined) { diff --git a/modules/demo/rapids-api-server/test/plugins/support.test.js b/modules/demo/rapids-api-server/test/plugins/support.test.js index 0019787f7..863cc6c10 100644 --- a/modules/demo/rapids-api-server/test/plugins/support.test.js +++ b/modules/demo/rapids-api-server/test/plugins/support.test.js @@ -1,16 +1,12 @@ 'use strict' -const { test } = require('tap') +const {test} = require('tap') const Fastify = require('fastify') const Support = require('../../plugins/support') -test('support works standalone', async (t) => { - const fastify = Fastify() - fastify.register(Support) - - await fastify.ready() - t.equal(fastify.someSupport(), 'hugs') -}) +describe('gpu_cache tests', + async (t) => { + test('support works standalone', async (t) => { console.log('Gpu cache caches'); })}); // You can also use plugin with opts in fastify v2 // diff --git a/modules/demo/rapids-api-server/util/gpu_cache.js b/modules/demo/rapids-api-server/util/gpu_cache.js index 064dcc15e..1315ff3d3 100644 --- a/modules/demo/rapids-api-server/util/gpu_cache.js +++ b/modules/demo/rapids-api-server/util/gpu_cache.js @@ -12,7 +12,8 @@ // See the License for the specific language governing permissions and // limitations under the License. -const {Utf8String, Int32, DataFrame, StringSeries, Series, Float64} = require('@rapidsai/cudf'); +const {Bool8, Utf8String, Int32, Int64, DataFrame, StringSeries, Series, Float32, Float64} = + require('@rapidsai/cudf'); let timeout = -1; let datasets = {}; @@ -21,8 +22,21 @@ function clearCachedGPUData() { for (const key in datasets) { datasets[key] = null; } }; -/* TODO: How do I apply a list of dtypes? - */ +function json_key_attributes_to_dataframe(str) { + let arr = {}; + const columns = ['cluster', 'x', 'y', 'size', 'label', 'color']; + const dtypes = [new Int32, new Float32, new Float32, new Int32, new Utf8String, new Utf8String]; + const no_open_list = str.split('[\n').gather([1], false); + const tokenized = no_open_list.split('},'); + columns.forEach((col, ix) => { + const parse_result = tokenized._col.getJSONObject('.attributes.' + columns[ix]); + const string_array = Series.new(parse_result); + arr[col] = string_array.cast(dtypes[ix]); + }); + const result = new DataFrame(arr); + return result; +} + function json_aos_to_dataframe(str, columns, _) { let arr = {}; columns.forEach((col, ix) => { @@ -34,21 +48,31 @@ function json_aos_to_dataframe(str, columns, _) { const result = new DataFrame(arr); return result; } -/* TODO: How do I apply a list of dtypes? - */ + function json_aoa_to_dataframe(str, dtypes) { - let arr = {}; + let arr = {}; + const no_open_list = str.split('[\n').gather([1], false); + const tokenized = no_open_list.split('],'); dtypes.forEach((_, ix) => { - const no_open_list = str.split('[\n').gather([1], false); - const tokenized = no_open_list.split('],'); const get_ix = `[${ix}]`; const parse_result = tokenized._col.getJSONObject(get_ix); - arr[ix] = Series.new(parse_result); + const string_array = Series.new(parse_result); + arr[ix] = string_array.cast(dtypes[ix]); }); const result = new DataFrame(arr); return result; } +function getGraphologyObjectOrder(json_dataset) { + const graphologyObjects = + ['"nodes:"', '"clusters:"', '"tags:"', '"edges:"', '"attributes:"', '"options:"']; + graphologyObjects.forEach((key, ix) => { + console.log(key); + console.log(ix); + console.log({key: key, ix: ix, pos: json_dataset._col.find(key)}); + }); +} + module.exports = { setDataframe(name, dataframe) { if (timeout) { clearTimeout(timeout); } @@ -57,9 +81,31 @@ module.exports = { console.log(datasets); }, getDataframe(name) { return datasets[name] }, + readLargeGraphDemo(path) { + console.log('readLargeGraphDemo'); + const dataset = StringSeries.readText(path, ''); + let split = dataset.split('"options":'); + const toptions = split.gather([1], false); + let rest = split.gather([0], false); + split = rest.split('"edges":'); + const tedges = split.gather([1], false); + rest = split.gather([0], false); + split = rest.split('"nodes":'); + const tnodes = split.gather([1], false); + const nodes = json_key_attributes_to_dataframe(tnodes); + const edges = json_aos_to_dataframe( + tedges, ['key', 'source', 'target'], [new Utf8String, new Int32, new Int32]); + let optionsArr = {}; + optionsArr['type'] = Series.new(toptions._col.getJSONObject('.type')); + optionsArr['multi'] = Series.new(toptions._col.getJSONObject('.multi')); + optionsArr['allowSelfLoops'] = Series.new(toptions._col.getJSONObject('.allowSelfLoops')); + const options = new DataFrame(optionsArr); + return {nodes: nodes, edges: edges, options: options}; + }, readGraphology(path) { console.log('readGraphology'); - const dataset = StringSeries.readText(path, ''); + const dataset = StringSeries.readText(path, ''); + getGraphologyObjectOrder(dataset); let split = dataset.split('"tags":'); const ttags = split.gather([1], false); let rest = split.gather([0], false); diff --git a/modules/demo/sigma.js b/modules/demo/sigma.js index 2fb4cebfc..722311a0f 160000 --- a/modules/demo/sigma.js +++ b/modules/demo/sigma.js @@ -1 +1 @@ -Subproject commit 2fb4cebfcdaa27be82d9648835db4e63c268f3af +Subproject commit 722311a0f122959eca9426c2a646d75e10d6be9a From 5883cf2ecb7fdf563e7e3beae3e429da3fe94a38 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 27 May 2022 10:35:18 -0500 Subject: [PATCH 25/68] Tile data for rendering. --- .../routes/graphology/index.js | 85 +++++++++++++++++-- modules/demo/sigma.js | 2 +- 2 files changed, 78 insertions(+), 9 deletions(-) diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index 084bf4fa2..a08d39018 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -12,14 +12,15 @@ // See the License for the specific language governing permissions and // limitations under the License. -const Fs = require('fs'); -const {Utf8String, Int32, DataFrame, StringSeries, Series, Float64} = require('@rapidsai/cudf'); -const {RecordBatchStreamWriter, Field, Vector, List, Table} = require('apache-arrow'); -const Path = require('path'); -const {promisify} = require('util'); -const Stat = promisify(Fs.stat); -const fastifyCors = require('@fastify/cors'); -const fastify = require('fastify'); +const Fs = require('fs'); +const {Utf8String, Int32, Uint32, Float32, DataFrame, StringSeries, Series, Float64} = + require('@rapidsai/cudf'); +const {RecordBatchStreamWriter, Field, Vector, List, Table} = require('apache-arrow'); +const Path = require('path'); +const {promisify} = require('util'); +const Stat = promisify(Fs.stat); +const fastifyCors = require('@fastify/cors'); +const fastify = require('fastify'); const arrowPlugin = require('fastify-arrow'); const gpu_cache = require('../../util/gpu_cache.js'); @@ -211,4 +212,72 @@ module.exports = async function(fastify, opts) { } } }); + + fastify.route({ + method: 'GET', + url: '/nodes/bounds', + handler: async (request, reply) => { + let message = 'Error'; + let result = {success: false, message: message}; + const df = gpu_cache.getDataframe('nodes'); + if (df == undefined) { + result.message = 'Table not found'; + reply.code(404).send(result); + } else { + // compute xmin, xmax, ymin, ymax + const x = df.get('x'); + const y = df.get('y'); + + result.bounds = + {xmin: x._col.min(), xmax: x._col.max(), ymin: y._col.min(), ymax: y._col.max()}; + result.message = 'Success'; + result.success = true; + reply.code(200).send(result); + } + } + }); + + fastify.route({ + method: 'GET', + url: '/nodes/', + handler: async (request, reply) => { + let message = 'Error'; + let result = {success: false, message: message}; + const df = gpu_cache.getDataframe('nodes'); + if (df == undefined) { + result.message = 'Table not found'; + reply.code(404).send(result); + } else { + // tile x, y, size, color + let tiled = Series.sequence({type: new Float32, init: 0.0, size: (4 * df.numRows)}); + let base_offset = + Series.sequence({type: new Int32, init: 0.0, size: df.numRows})._col.mul(4); + // + // Duplicatin the sigma.j createNormalizationFunction here because there's no other way + // to let the Graph object compute it. + // + let x = df.get('x'); + let y = df.get('y'); + let color = df.get('color'); + const ratio = + Series.new([x._col.max() - x._col.min(), y._col.max() - y._col.min()])._col.max(); + const dX = (x._col.max() + x._col.min()) / 2.0; + const dY = (y._col.max() + y._col.min()) / 2.0; + x = x._col.add(-1.0 * dX).mul(1.0 / ratio).add(0.5); + y = y._col.add(-1.0 * dY).mul(1.0 / ratio).add(0.5); + // done with createNormalizationFunction + tiled = tiled.scatter(Series.new(x), Series.new(base_offset).cast(new Int32)); + tiled = tiled.scatter(Series.new(y), Series.new(base_offset.add(1).cast(new Int32))); + tiled = tiled.scatter(Series.new(df.get('size')._col.mul(2)), + Series.new(base_offset.add(2).cast(new Int32))); + color = color._col.hexToIntegers(new Uint32).bitwiseOr(0xff000000); + // color = Series.sequence({size: color.length, type: new Int32, init: 0xff0000ff, step: + // 0}); + tiled = tiled.scatter(Series.new(color).view(new Float32), + Series.new(base_offset.add(3).cast(new Int32))); + const writer = RecordBatchStreamWriter.writeAll(new DataFrame({nodes: tiled}).toArrow()); + reply.code(200).send(writer.toNodeStream()); + } + } + }); } diff --git a/modules/demo/sigma.js b/modules/demo/sigma.js index 722311a0f..a326be75a 160000 --- a/modules/demo/sigma.js +++ b/modules/demo/sigma.js @@ -1 +1 @@ -Subproject commit 722311a0f122959eca9426c2a646d75e10d6be9a +Subproject commit a326be75aeff77e5a507b1bc45629ceffd270637 From ffbb65209f44bd784ae3cf23a293a301c0dafa22 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 27 May 2022 14:18:10 -0500 Subject: [PATCH 26/68] Now feed edges to Sigma. --- .../routes/graphology/index.js | 55 +++++++++++++++++++ .../demo/rapids-api-server/util/gpu_cache.js | 4 +- 2 files changed, 57 insertions(+), 2 deletions(-) diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index a08d39018..e0e08c2cc 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -280,4 +280,59 @@ module.exports = async function(fastify, opts) { } } }); + + fastify.route({ + method: 'GET', + url: '/edges/', + handler: async (request, reply) => { + let message = 'Error'; + let result = {success: false, message: message}; + const df = gpu_cache.getDataframe('nodes'); + const edges = gpu_cache.getDataframe('edges'); + if (df == undefined) { + result.message = 'Table not found'; + reply.code(404).send(result); + } else { + // tile x, y, size, color + let tiled = Series.sequence({type: new Float32, init: 0.0, size: (6 * edges.numRows)}); + let base_offset = + Series.sequence({type: new Int32, init: 0.0, size: edges.numRows})._col.mul(3); + // + // Duplicatin the sigma.j createNormalizationFunction here because there's no other way + // to let the Graph object compute it. + // + let source = edges.get('source'); + let target = edges.get('target'); + let x = df.get('x'); + let y = df.get('y'); + const ratio = + Series.new([x._col.max() - x._col.min(), y._col.max() - y._col.min()])._col.max(); + const dX = (x._col.max() + x._col.min()) / 2.0; + const dY = (y._col.max() + y._col.min()) / 2.0; + x = x._col.add(-1.0 * dX).mul(1.0 / ratio).add(0.5); + y = y._col.add(-1.0 * dY).mul(1.0 / ratio).add(0.5); + const source_xmap = x.gather(source._col.cast(new Int32)); + const source_ymap = y.gather(source._col.cast(new Int32)); + const target_xmap = x.gather(target._col.cast(new Int32)); + const target_ymap = y.gather(target._col.cast(new Int32)); + const color = Series.new(['#999']) + .hexToIntegers(new Int32) + .bitwiseOr(0xff000000) + .view(new Float32) + .toArray()[0]; + tiled = + tiled.scatter(Series.new(source_xmap), Series.new(base_offset.mul(2)).cast(new Int32)); + tiled = tiled.scatter(Series.new(source_ymap), + Series.new(base_offset.mul(2).add(1)).cast(new Int32)); + tiled = tiled.scatter(color, Series.new(base_offset.mul(2).add(2).cast(new Int32))); + tiled = tiled.scatter(Series.new(target_xmap), + Series.new(base_offset.mul(2).add(3)).cast(new Int32)); + tiled = tiled.scatter(Series.new(target_ymap), + Series.new(base_offset.mul(2).add(4)).cast(new Int32)); + tiled = tiled.scatter(color, Series.new(base_offset.mul(2).add(5).cast(new Int32))); + const writer = RecordBatchStreamWriter.writeAll(new DataFrame({nodes: tiled}).toArrow()); + reply.code(200).send(writer.toNodeStream()); + } + } + }); } diff --git a/modules/demo/rapids-api-server/util/gpu_cache.js b/modules/demo/rapids-api-server/util/gpu_cache.js index 1315ff3d3..a54737a50 100644 --- a/modules/demo/rapids-api-server/util/gpu_cache.js +++ b/modules/demo/rapids-api-server/util/gpu_cache.js @@ -37,13 +37,13 @@ function json_key_attributes_to_dataframe(str) { return result; } -function json_aos_to_dataframe(str, columns, _) { +function json_aos_to_dataframe(str, columns, dtypes) { let arr = {}; columns.forEach((col, ix) => { const no_open_list = str.split('[\n').gather([1], false); const tokenized = no_open_list.split('},'); const parse_result = tokenized._col.getJSONObject('.' + columns[ix]); - arr[col] = Series.new(parse_result); + arr[col] = Series.new(parse_result).cast(dtypes[ix]); }); const result = new DataFrame(arr); return result; From 545be5f8fd6f29d645dbc51dfb7043e27f5eec22 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 27 May 2022 16:41:11 -0500 Subject: [PATCH 27/68] Edges rendering. --- modules/demo/rapids-api-server/routes/graphology/index.js | 2 +- modules/demo/sigma.js | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index e0e08c2cc..02b2e9371 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -330,7 +330,7 @@ module.exports = async function(fastify, opts) { tiled = tiled.scatter(Series.new(target_ymap), Series.new(base_offset.mul(2).add(4)).cast(new Int32)); tiled = tiled.scatter(color, Series.new(base_offset.mul(2).add(5).cast(new Int32))); - const writer = RecordBatchStreamWriter.writeAll(new DataFrame({nodes: tiled}).toArrow()); + const writer = RecordBatchStreamWriter.writeAll(new DataFrame({edges: tiled}).toArrow()); reply.code(200).send(writer.toNodeStream()); } } diff --git a/modules/demo/sigma.js b/modules/demo/sigma.js index a326be75a..ab685810f 160000 --- a/modules/demo/sigma.js +++ b/modules/demo/sigma.js @@ -1 +1 @@ -Subproject commit a326be75aeff77e5a507b1bc45629ceffd270637 +Subproject commit ab685810f9d8fadbfe5f647c07ac0440cc9219dd From cd8e95eaa4c6cc53f6b5116aef9d7c6e1ecf7473 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Tue, 31 May 2022 16:10:19 -0500 Subject: [PATCH 28/68] Remove yarn.lock --- modules/demo/rapids-api-server/yarn.lock | 2624 ---------------------- modules/demo/sigma.js | 2 +- 2 files changed, 1 insertion(+), 2625 deletions(-) delete mode 100644 modules/demo/rapids-api-server/yarn.lock diff --git a/modules/demo/rapids-api-server/yarn.lock b/modules/demo/rapids-api-server/yarn.lock deleted file mode 100644 index a87009d49..000000000 --- a/modules/demo/rapids-api-server/yarn.lock +++ /dev/null @@ -1,2624 +0,0 @@ -# THIS IS AN AUTOGENERATED FILE. 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Thomson Comer" Date: Fri, 3 Jun 2022 14:39:15 -0500 Subject: [PATCH 29/68] Clean up a typo and improve package.json for rapids-api-server. --- modules/demo/.vscode/launch.json | 2 +- modules/demo/rapids-api-server/package.json | 14 +++++++------- modules/demo/sigma.js | 2 +- 3 files changed, 9 insertions(+), 9 deletions(-) diff --git a/modules/demo/.vscode/launch.json b/modules/demo/.vscode/launch.json index 9e5baecc1..192894747 100644 --- a/modules/demo/.vscode/launch.json +++ b/modules/demo/.vscode/launch.json @@ -113,7 +113,7 @@ "command": "shellCommand.execute", "args": { "description": "Select a demo to debug", - "command": "echo client-server viz-app what rapids-api-server luma graph spatial xterm $(find modules/demo/deck modules/demo/tfjs modules/demo/ipc modules/demo/ssr modules/demo/sql -maxdepth 2 -type f -name 'package.json' -print0 | grep -z -v node_modules | tr -d '\\0' | sed -r 's@modules/demo/@@g' | sed -r 's@/package.json@ @g') | sort -Vr | sed -r 's@\\s@\\n@g'", + "command": "echo client-server viz-app rapids-api-server luma graph spatial xterm $(find modules/demo/deck modules/demo/tfjs modules/demo/ipc modules/demo/ssr modules/demo/sql -maxdepth 2 -type f -name 'package.json' -print0 | grep -z -v node_modules | tr -d '\\0' | sed -r 's@modules/demo/@@g' | sed -r 's@/package.json@ @g') | sort -Vr | sed -r 's@\\s@\\n@g'", } }, ] diff --git a/modules/demo/rapids-api-server/package.json b/modules/demo/rapids-api-server/package.json index 05067e287..a92d96985 100644 --- a/modules/demo/rapids-api-server/package.json +++ b/modules/demo/rapids-api-server/package.json @@ -1,20 +1,20 @@ { - "name": "test", - "version": "1.0.0", - "description": "This project was bootstrapped with Fastify-CLI.", + "name": "rapids-api-server", + "version": "0.0.1", + "description": "A fastify-based web server that provides browser-access to GPU resources.", "main": "index.js", "directories": { "test": "test" }, "scripts": { "test": "tap \"test/**/*.test.js\"", - "build": "tsc -p ../../../tsconfig.json", + "build": "tsc -p ./tsconfig.json", "start": "npm run build; fastify start -l info -P -w app.js", "dev": "fastify start -w -l info -P app.js" }, - "keywords": [], - "author": "", - "license": "ISC", + "keywords": ["rapids.ai", "node", "NVIDIA", "gpu", "Dataframe", "pandas"], + "author": "Thomson Comer", + "license": "MIT", "dependencies": { "@fastify/autoload": "^4.0.0", "@fastify/sensible": "^4.0.0", diff --git a/modules/demo/sigma.js b/modules/demo/sigma.js index e6417591f..e11ff5615 160000 --- a/modules/demo/sigma.js +++ b/modules/demo/sigma.js @@ -1 +1 @@ -Subproject commit e6417591f928a30136854d5188bb2b66b75eac73 +Subproject commit e11ff5615249a75d6f2b1367420ce68c99463271 From ab49025cf1c58555a8832d5345d4d3372baa01d6 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 3 Jun 2022 15:01:51 -0500 Subject: [PATCH 30/68] Remove tsconfig because there's no TypeScript in here? --- modules/demo/rapids-api-server/tsconfig.json | 164 ------------------- 1 file changed, 164 deletions(-) delete mode 100644 modules/demo/rapids-api-server/tsconfig.json diff --git a/modules/demo/rapids-api-server/tsconfig.json b/modules/demo/rapids-api-server/tsconfig.json deleted file mode 100644 index c03eb26dd..000000000 --- a/modules/demo/rapids-api-server/tsconfig.json +++ /dev/null @@ -1,164 +0,0 @@ -{ - "include": [ - "routes/**/*.ts", - "plugins/**/*.ts" - ], - "exclude": ["node_modules"], - "compilerOptions": { - "baseUrl": "../../../", - "paths": { - "@rapidsai/core": ["modules/rapids-core/src/index"], - "@rapidsai/core/*": ["modules/rapids-core/src/*"], - "@rapidsai/cuda": ["modules/cuda/src/index"], - "@rapidsai/cuda/*": ["modules/cuda/src/*"], - "@rapidsai/rmm": ["modules/rmm/src/index"], - "@rapidsai/rmm/*": ["modules/rmm/src/*"], - "@rapidsai/cudf": ["modules/cudf/src/index"], - "@rapidsai/cudf/*": ["modules/cudf/src/*"], - "@rapidsai/cugraph": ["modules/cugraph/src/index"], - "@rapidsai/cugraph/*": ["modules/cugraph/src/*"], - "@rapidsai/cuspatial": ["modules/cuspatial/src/index"], - "@rapidsai/cuspatial/*": ["modules/cuspatial/src/*"], - "@rapidsai/deck.gl": ["modules/deck.gl/src/index"], - "@rapidsai/deck.gl/*": ["modules/deck.gl/src/*"], - "@rapidsai/jsdom": ["modules/jsdom/src/index"], - "@rapidsai/jsdom/*": ["modules/jsdom/src/*"], - "@rapidsai/glfw": ["modules/glfw/src/index"], - "@rapidsai/glfw/*": ["modules/glfw/src/*"], - "@rapidsai/io": ["modules/io/src/index"], - "@rapidsai/io/*": ["modules/io/src/*"], - "@rapidsai/webgl": ["modules/webgl/src/index"], - "@rapidsai/webgl/*": ["modules/webgl/src/*"], - "@rapidsai/sql": ["modules/sql/src/index"], - "@rapidsai/sql/*": ["modules/sql/src/*"], - "deck.gl": ["node_modules/deck.gl/src/index"], - "deck.gl/dist/es5/*": ["node_modules/deck.gl/src/*"], - "deck.gl/dist/es6/*": ["node_modules/deck.gl/src/*"], - "deck.gl/dist/esm/*": ["node_modules/deck.gl/src/*"], - "@deck.gl/arcgis": ["node_modules/@deck.gl/arcgis/src/index"], - "@deck.gl/arcgis/dist/es5/*": ["node_modules/@deck.gl/arcgis/src/*"], - "@deck.gl/arcgis/dist/es6/*": ["node_modules/@deck.gl/arcgis/src/*"], - "@deck.gl/arcgis/dist/esm/*": ["node_modules/@deck.gl/arcgis/src/*"], - "@deck.gl/aggregation-layers": ["node_modules/@deck.gl/aggregation-layers/src/index"], - "@deck.gl/aggregation-layers/dist/es5/*": ["node_modules/@deck.gl/aggregation-layers/src/*"], - "@deck.gl/aggregation-layers/dist/es6/*": ["node_modules/@deck.gl/aggregation-layers/src/*"], - "@deck.gl/aggregation-layers/dist/esm/*": ["node_modules/@deck.gl/aggregation-layers/src/*"], - "@deck.gl/core": ["node_modules/@deck.gl/core/src/index"], - "@deck.gl/core/dist/es5/*": ["node_modules/@deck.gl/core/src/*"], - "@deck.gl/core/dist/es6/*": ["node_modules/@deck.gl/core/src/*"], - "@deck.gl/core/dist/esm/*": ["node_modules/@deck.gl/core/src/*"], - "@deck.gl/extensions": ["node_modules/@deck.gl/extensions/src/index"], - "@deck.gl/extensions/dist/es5/*": ["node_modules/@deck.gl/extensions/src/*"], - "@deck.gl/extensions/dist/es6/*": ["node_modules/@deck.gl/extensions/src/*"], - "@deck.gl/extensions/dist/esm/*": ["node_modules/@deck.gl/extensions/src/*"], - "@deck.gl/geo-layers": ["node_modules/@deck.gl/geo-layers/src/index"], - "@deck.gl/geo-layers/dist/es5/*": ["node_modules/@deck.gl/geo-layers/src/*"], - "@deck.gl/geo-layers/dist/es6/*": ["node_modules/@deck.gl/geo-layers/src/*"], - "@deck.gl/geo-layers/dist/esm/*": ["node_modules/@deck.gl/geo-layers/src/*"], - "@deck.gl/google-maps": ["node_modules/@deck.gl/google-maps/src/index"], - "@deck.gl/google-maps/dist/es5/*": ["node_modules/@deck.gl/google-maps/src/*"], - "@deck.gl/google-maps/dist/es6/*": ["node_modules/@deck.gl/google-maps/src/*"], - "@deck.gl/google-maps/dist/esm/*": ["node_modules/@deck.gl/google-maps/src/*"], - "@deck.gl/json": ["node_modules/@deck.gl/json/src/index"], - "@deck.gl/json/dist/es5/*": ["node_modules/@deck.gl/json/src/*"], - "@deck.gl/json/dist/es6/*": ["node_modules/@deck.gl/json/src/*"], - "@deck.gl/json/dist/esm/*": ["node_modules/@deck.gl/json/src/*"], - "@deck.gl/jupyter-widget": ["node_modules/@deck.gl/jupyter-widget/src/index"], - "@deck.gl/jupyter-widget/dist/es5/*": ["node_modules/@deck.gl/jupyter-widget/src/*"], - "@deck.gl/jupyter-widget/dist/es6/*": ["node_modules/@deck.gl/jupyter-widget/src/*"], - "@deck.gl/jupyter-widget/dist/esm/*": ["node_modules/@deck.gl/jupyter-widget/src/*"], - "@deck.gl/layers": ["node_modules/@deck.gl/layers/src/index"], - "@deck.gl/layers/dist/es5/*": ["node_modules/@deck.gl/layers/src/*"], - "@deck.gl/layers/dist/es6/*": ["node_modules/@deck.gl/layers/src/*"], - "@deck.gl/layers/dist/esm/*": ["node_modules/@deck.gl/layers/src/*"], - "@deck.gl/mapbox": ["node_modules/@deck.gl/mapbox/src/index"], - "@deck.gl/mapbox/dist/es5/*": ["node_modules/@deck.gl/mapbox/src/*"], - "@deck.gl/mapbox/dist/es6/*": ["node_modules/@deck.gl/mapbox/src/*"], - "@deck.gl/mapbox/dist/esm/*": ["node_modules/@deck.gl/mapbox/src/*"], - "@deck.gl/mesh-layers": ["node_modules/@deck.gl/mesh-layers/src/index"], - "@deck.gl/mesh-layers/dist/es5/*": ["node_modules/@deck.gl/mesh-layers/src/*"], - "@deck.gl/mesh-layers/dist/es6/*": ["node_modules/@deck.gl/mesh-layers/src/*"], - "@deck.gl/mesh-layers/dist/esm/*": ["node_modules/@deck.gl/mesh-layers/src/*"], - "@deck.gl/react": ["node_modules/@deck.gl/react/src/index"], - "@deck.gl/react/dist/es5/*": ["node_modules/@deck.gl/react/src/*"], - "@deck.gl/react/dist/es6/*": ["node_modules/@deck.gl/react/src/*"], - "@deck.gl/react/dist/esm/*": ["node_modules/@deck.gl/react/src/*"], - "@deck.gl/test-utils": ["node_modules/@deck.gl/test-utils/src/index"], - "@deck.gl/test-utils/dist/es5/*": ["node_modules/@deck.gl/test-utils/src/*"], - "@deck.gl/test-utils/dist/es6/*": ["node_modules/@deck.gl/test-utils/src/*"], - "@deck.gl/test-utils/dist/esm/*": ["node_modules/@deck.gl/test-utils/src/*"], - "@luma.gl/constants": ["node_modules/@luma.gl/constants/src/index"], - "@luma.gl/constants/dist/es5/*": ["node_modules/@luma.gl/constants/src/*"], - "@luma.gl/constants/dist/es6/*": ["node_modules/@luma.gl/constants/src/*"], - "@luma.gl/constants/dist/esm/*": ["node_modules/@luma.gl/constants/src/*"], - "@luma.gl/core": ["node_modules/@luma.gl/core/src/index"], - "@luma.gl/core/dist/es5/*": ["node_modules/@luma.gl/core/src/*"], - "@luma.gl/core/dist/es6/*": ["node_modules/@luma.gl/core/src/*"], - "@luma.gl/core/dist/esm/*": ["node_modules/@luma.gl/core/src/*"], - "@luma.gl/debug": ["node_modules/@luma.gl/debug/src/index"], - "@luma.gl/debug/dist/es5/*": ["node_modules/@luma.gl/debug/src/*"], - "@luma.gl/debug/dist/es6/*": ["node_modules/@luma.gl/debug/src/*"], - "@luma.gl/debug/dist/esm/*": ["node_modules/@luma.gl/debug/src/*"], - "@luma.gl/engine": ["node_modules/@luma.gl/engine/src/index"], - "@luma.gl/engine/dist/es5/*": ["node_modules/@luma.gl/engine/src/*"], - "@luma.gl/engine/dist/es6/*": ["node_modules/@luma.gl/engine/src/*"], - "@luma.gl/engine/dist/esm/*": ["node_modules/@luma.gl/engine/src/*"], - "@luma.gl/experimental": ["node_modules/@luma.gl/experimental/src/index"], - "@luma.gl/experimental/dist/es5/*": ["node_modules/@luma.gl/experimental/src/*"], - "@luma.gl/experimental/dist/es6/*": ["node_modules/@luma.gl/experimental/src/*"], - "@luma.gl/experimental/dist/esm/*": ["node_modules/@luma.gl/experimental/src/*"], - "@luma.gl/gltools": ["node_modules/@luma.gl/gltools/src/index"], - "@luma.gl/gltools/dist/es5/*": ["node_modules/@luma.gl/gltools/src/*"], - "@luma.gl/gltools/dist/es6/*": ["node_modules/@luma.gl/gltools/src/*"], - "@luma.gl/gltools/dist/esm/*": ["node_modules/@luma.gl/gltools/src/*"], - "@luma.gl/shadertools": ["node_modules/@luma.gl/shadertools/src/index"], - "@luma.gl/shadertools/dist/es5/*": ["node_modules/@luma.gl/shadertools/src/*"], - "@luma.gl/shadertools/dist/es6/*": ["node_modules/@luma.gl/shadertools/src/*"], - "@luma.gl/shadertools/dist/esm/*": ["node_modules/@luma.gl/shadertools/src/*"], - "@luma.gl/test-utils": ["node_modules/@luma.gl/test-utils/src/index"], - "@luma.gl/test-utils/dist/es5/*": ["node_modules/@luma.gl/test-utils/src/*"], - "@luma.gl/test-utils/dist/es6/*": ["node_modules/@luma.gl/test-utils/src/*"], - "@luma.gl/test-utils/dist/esm/*": ["node_modules/@luma.gl/test-utils/src/*"], - "@luma.gl/webgl": ["node_modules/@luma.gl/webgl/src/index"], - "@luma.gl/webgl/dist/es5/*": ["node_modules/@luma.gl/webgl/src/*"], - "@luma.gl/webgl/dist/es6/*": ["node_modules/@luma.gl/webgl/src/*"], - "@luma.gl/webgl/dist/esm/*": ["node_modules/@luma.gl/webgl/src/*"], - }, - "target": "ESNEXT", - "module": "commonjs", - "outDir": "./build/js", - - /* Decorators */ - "experimentalDecorators": true, - - /* Basic stuff */ - "moduleResolution": "node", - "skipLibCheck": true, - "skipDefaultLibCheck": true, - "lib": ["dom", "esnext", "esnext.asynciterable"], - - /* Control what is emitted */ - "declaration": true, - "noEmitOnError": true, - "removeComments": false, - "downlevelIteration": true, - - /* Create inline sourcemaps with sources */ - "sourceMap": false, - "inlineSources": true, - "inlineSourceMap": true, - - /* The most restrictive settings possible */ - "strict": true, - "importHelpers": true, - "noEmitHelpers": true, - "noImplicitAny": true, - "noUnusedLocals": true, - "noImplicitReturns": true, - "allowUnusedLabels": false, - "noUnusedParameters": true, - "allowUnreachableCode": false, - "noFallthroughCasesInSwitch": true, - "forceConsistentCasingInFileNames": true - } -} From fe42b317667d964960193ae0e961e1db4ffb0369 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 3 Jun 2022 15:08:39 -0500 Subject: [PATCH 31/68] Update modules/demo/rapids-api-server/routes/graphology/index.js Co-authored-by: Paul Taylor --- modules/demo/rapids-api-server/routes/graphology/index.js | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index 02b2e9371..1129282c2 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -259,8 +259,11 @@ module.exports = async function(fastify, opts) { let x = df.get('x'); let y = df.get('y'); let color = df.get('color'); - const ratio = - Series.new([x._col.max() - x._col.min(), y._col.max() - y._col.min()])._col.max(); + const ratio = () => { + const [xMin, xMax] = x.minmax(); + const [yMin, yMax] = y.minmax(); + Math.max(xMax - xMin, yMax - yMin); + })(); const dX = (x._col.max() + x._col.min()) / 2.0; const dY = (y._col.max() + y._col.min()) / 2.0; x = x._col.add(-1.0 * dX).mul(1.0 / ratio).add(0.5); From bfe62a0d902e012543db55c4b143814b5cf27ed3 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 3 Jun 2022 15:08:48 -0500 Subject: [PATCH 32/68] Update modules/demo/rapids-api-server/routes/graphology/index.js Co-authored-by: Paul Taylor --- .../rapids-api-server/routes/graphology/index.js | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index 1129282c2..3b94dbfb8 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -264,13 +264,13 @@ module.exports = async function(fastify, opts) { const [yMin, yMax] = y.minmax(); Math.max(xMax - xMin, yMax - yMin); })(); - const dX = (x._col.max() + x._col.min()) / 2.0; - const dY = (y._col.max() + y._col.min()) / 2.0; - x = x._col.add(-1.0 * dX).mul(1.0 / ratio).add(0.5); - y = y._col.add(-1.0 * dY).mul(1.0 / ratio).add(0.5); + const dX = x.minmax().reduce((min, max) => max + min, 0) / 2.0; + const dY = y.minmax().reduce((min, max) => max + min, 0) / 2.0; + x = x.add(-1.0 * dX).mul(1.0 / ratio).add(0.5); + y = y.add(-1.0 * dY).mul(1.0 / ratio).add(0.5); // done with createNormalizationFunction - tiled = tiled.scatter(Series.new(x), Series.new(base_offset).cast(new Int32)); - tiled = tiled.scatter(Series.new(y), Series.new(base_offset.add(1).cast(new Int32))); + tiled = tiled.scatter(x, base_offset.cast(new Int32)); + tiled = tiled.scatter(y, base_offset.add(1).cast(new Int32)); tiled = tiled.scatter(Series.new(df.get('size')._col.mul(2)), Series.new(base_offset.add(2).cast(new Int32))); color = color._col.hexToIntegers(new Uint32).bitwiseOr(0xff000000); From e1ea36efff23c971499ae873de766ecc48f0fc42 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 3 Jun 2022 15:08:58 -0500 Subject: [PATCH 33/68] Update modules/demo/rapids-api-server/routes/graphology/index.js Co-authored-by: Paul Taylor --- .../demo/rapids-api-server/routes/graphology/index.js | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index 3b94dbfb8..ae6242351 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -271,13 +271,13 @@ module.exports = async function(fastify, opts) { // done with createNormalizationFunction tiled = tiled.scatter(x, base_offset.cast(new Int32)); tiled = tiled.scatter(y, base_offset.add(1).cast(new Int32)); - tiled = tiled.scatter(Series.new(df.get('size')._col.mul(2)), - Series.new(base_offset.add(2).cast(new Int32))); - color = color._col.hexToIntegers(new Uint32).bitwiseOr(0xff000000); + tiled = tiled.scatter(df.get('size').mul(2), + base_offset.add(2).cast(new Int32)); + color = color.hexToIntegers(new Uint32).bitwiseOr(0xff000000); // color = Series.sequence({size: color.length, type: new Int32, init: 0xff0000ff, step: // 0}); - tiled = tiled.scatter(Series.new(color).view(new Float32), - Series.new(base_offset.add(3).cast(new Int32))); + tiled = tiled.scatter(color.view(new Float32), + base_offset.add(3).cast(new Int32)); const writer = RecordBatchStreamWriter.writeAll(new DataFrame({nodes: tiled}).toArrow()); reply.code(200).send(writer.toNodeStream()); } From 80af506705cba09f67c404d869d3ff3a70f9f6c4 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 3 Jun 2022 15:45:29 -0500 Subject: [PATCH 34/68] Update modules/demo/rapids-api-server/routes/graphology/index.js Co-authored-by: Paul Taylor --- modules/demo/rapids-api-server/routes/graphology/index.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index ae6242351..7d5e64aac 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -251,7 +251,7 @@ module.exports = async function(fastify, opts) { // tile x, y, size, color let tiled = Series.sequence({type: new Float32, init: 0.0, size: (4 * df.numRows)}); let base_offset = - Series.sequence({type: new Int32, init: 0.0, size: df.numRows})._col.mul(4); + Series.sequence({type: new Int32, init: 0.0, size: df.numRows}).mul(4); // // Duplicatin the sigma.j createNormalizationFunction here because there's no other way // to let the Graph object compute it. From 0ff89cc09799c05fdf6647163ecd6def9e7e81e0 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 3 Jun 2022 17:19:35 -0500 Subject: [PATCH 35/68] Update fastify-arrow to 1.0.0 --- modules/demo/rapids-api-server/package.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/demo/rapids-api-server/package.json b/modules/demo/rapids-api-server/package.json index a92d96985..95d4f85da 100644 --- a/modules/demo/rapids-api-server/package.json +++ b/modules/demo/rapids-api-server/package.json @@ -20,7 +20,7 @@ "@fastify/sensible": "^4.0.0", "@types/node": "17.0.33", "fastify": "^3.0.0", - "fastify-arrow": "0.1.0", + "fastify-arrow": "1.0.0", "fastify-cli": "^3.0.1", "fastify-plugin": "^3.0.0", "@fastify/cors": "latest", From fb81696c01ab25c8df3d9b6589f0f6e6cfc3816f Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 3 Jun 2022 17:24:55 -0500 Subject: [PATCH 36/68] Remove a few unneeded files and fix root package.json --- .../public/dataset_small.json.txt | 105 - .../routes/dataset_small.json.txt | 105 - .../rapids-api-server/routes/example/index.js | 7 - package.json | 3 +- yarn.lock | 7374 ++++++++++++++++- 5 files changed, 7012 insertions(+), 582 deletions(-) delete mode 100644 modules/demo/rapids-api-server/public/dataset_small.json.txt delete mode 100644 modules/demo/rapids-api-server/routes/dataset_small.json.txt delete mode 100644 modules/demo/rapids-api-server/routes/example/index.js diff --git a/modules/demo/rapids-api-server/public/dataset_small.json.txt b/modules/demo/rapids-api-server/public/dataset_small.json.txt deleted file mode 100644 index fbc30ccf0..000000000 --- a/modules/demo/rapids-api-server/public/dataset_small.json.txt +++ /dev/null @@ -1,105 +0,0 @@ -{ - "nodes": [ - { - "key": "customer data management", - "label": "Customer data management", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Customer%20data%20management", - "cluster": "7", - "x": -278.2200012207031, - "y": 436.0100402832031, - "score": 0 - }, - { - "key": "educational data mining", - "label": "Educational data mining", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Educational%20data%20mining", - "cluster": "7", - "x": -1.9823756217956543, - "y": 250.4990692138672, - "score": 0 - }, - { - "key": "pathogenomics", - "label": "Pathogenomics", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Pathogenomics", - "cluster": "15", - "x": 959.1505737304688, - "y": -845.7308349609375, - "score": 0 - }, - { - "key": "office suite", - "label": "Office suite", - "tag": "Technology", - "URL": "https://en.wikipedia.org/wiki/Office%20suite", - "cluster": "1", - "x": -768.05224609375, - "y": 397.08294677734375, - "score": 0 - }, - { - "key": "human interactome", - "label": "Human interactome", - "tag": "Concept", - "URL": "https://en.wikipedia.org/wiki/Human%20interactome", - "cluster": "15", - "x": 1014.8722534179688, - "y": -673.8775634765625, - "score": 0 - } - ], - "edges": [ - ["office suite", "human interactome"], - ["educational data mining", "human interactome"], - ["customer data management", "office suite"], - ["educational data mining", "office suite"], - ["pathogenomics", "educational data mining"], - ["pathogenomics", "office suite"], - ["educational data mining", "pathogenomics"], - ["educational data mining", "customer data management"], - ["office suite", "pathogenomics"], - ["customer data management", "pathogenomics"] - ], - "clusters": [ - { "key": "0", "color": "#6c3e81", "clusterLabel": "human interactome" }, - { "key": "1", "color": "#666666", "clusterLabel": "Spreadsheets" }, - { "key": "3", "color": "#57a835", "clusterLabel": "Logic of information" }, - { "key": "4", "color": "#7145cd", "clusterLabel": "Trees and data structures" }, - { "key": "5", "color": "#579f5f", "clusterLabel": "Business intelligence" }, - { "key": "6", "color": "#d043c4", "clusterLabel": "Exploratory data analysis" }, - { "key": "7", "color": "#477028", "clusterLabel": "Softwares and data mining" }, - { "key": "8", "color": "#b174cb", "clusterLabel": "Project management" }, - { "key": "10", "color": "#a4923a", "clusterLabel": "Engineering" }, - { "key": "11", "color": "#5f83cc", "clusterLabel": "Semantic networks" }, - { "key": "12", "color": "#666666", "clusterLabel": "Sociometry" }, - { "key": "13", "color": "#666666", "clusterLabel": "Ideas and concepts" }, - { "key": "14", "color": "#db4139", "clusterLabel": "Arguments / Logic" }, - { "key": "15", "color": "#379982", "clusterLabel": "Scientific classification" }, - { "key": "16", "color": "#666666", "clusterLabel": "Decision trees" }, - { "key": "17", "color": "#666666", "clusterLabel": "Motion perception" }, - { "key": "18", "color": "#c94c83", "clusterLabel": "Artificial intelligence" }, - { "key": "19", "color": "#666666", "clusterLabel": "Linguistics" }, - { "key": "20", "color": "#7c5d28", "clusterLabel": "Collaborative problem solving" }, - { "key": "21", "color": "#a54a49", "clusterLabel": "Knowledge management" }, - { "key": "22", "color": "#666666", "clusterLabel": "Clinical terms and technologies" }, - { "key": "23", "color": "#cf7435", "clusterLabel": "Network Science" }, - { "key": "25", "color": "#666666", "clusterLabel": "Knots" }, - { "key": "24", "color": "#666666", "clusterLabel": "Tensors (mathematics)" } - ], - "tags": [ - { "key": "Chart type", "image": "charttype.svg" }, - { "key": "Company", "image": "company.svg" }, - { "key": "Concept", "image": "concept.svg" }, - { "key": "Field", "image": "field.svg" }, - { "key": "List", "image": "list.svg" }, - { "key": "Method", "image": "method.svg" }, - { "key": "Organization", "image": "organization.svg" }, - { "key": "Person", "image": "person.svg" }, - { "key": "Technology", "image": "technology.svg" }, - { "key": "Tool", "image": "tool.svg" }, - { "key": "unknown", "image": "unknown.svg" } - ] -} diff --git a/modules/demo/rapids-api-server/routes/dataset_small.json.txt b/modules/demo/rapids-api-server/routes/dataset_small.json.txt deleted file mode 100644 index fbc30ccf0..000000000 --- a/modules/demo/rapids-api-server/routes/dataset_small.json.txt +++ /dev/null @@ -1,105 +0,0 @@ -{ - "nodes": [ - { - "key": "customer data management", - "label": "Customer data management", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Customer%20data%20management", - "cluster": "7", - "x": -278.2200012207031, - "y": 436.0100402832031, - "score": 0 - }, - { - "key": "educational data mining", - "label": "Educational data mining", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Educational%20data%20mining", - "cluster": "7", - "x": -1.9823756217956543, - "y": 250.4990692138672, - "score": 0 - }, - { - "key": "pathogenomics", - "label": "Pathogenomics", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Pathogenomics", - "cluster": "15", - "x": 959.1505737304688, - "y": -845.7308349609375, - "score": 0 - }, - { - "key": "office suite", - "label": "Office suite", - "tag": "Technology", - "URL": "https://en.wikipedia.org/wiki/Office%20suite", - "cluster": "1", - "x": -768.05224609375, - "y": 397.08294677734375, - "score": 0 - }, - { - "key": "human interactome", - "label": "Human interactome", - "tag": "Concept", - "URL": "https://en.wikipedia.org/wiki/Human%20interactome", - "cluster": "15", - "x": 1014.8722534179688, - "y": -673.8775634765625, - "score": 0 - } - ], - "edges": [ - ["office suite", "human interactome"], - ["educational data mining", "human interactome"], - ["customer data management", "office suite"], - ["educational data mining", "office suite"], - ["pathogenomics", "educational data mining"], - ["pathogenomics", "office suite"], - ["educational data mining", "pathogenomics"], - ["educational data mining", "customer data management"], - ["office suite", "pathogenomics"], - ["customer data management", "pathogenomics"] - ], - "clusters": [ - { "key": "0", "color": "#6c3e81", "clusterLabel": "human interactome" }, - { "key": "1", "color": "#666666", "clusterLabel": "Spreadsheets" }, - { "key": "3", "color": "#57a835", "clusterLabel": "Logic of information" }, - { "key": "4", "color": "#7145cd", "clusterLabel": "Trees and data structures" }, - { "key": "5", "color": "#579f5f", "clusterLabel": "Business intelligence" }, - { "key": "6", "color": "#d043c4", "clusterLabel": "Exploratory data analysis" }, - { "key": "7", "color": "#477028", "clusterLabel": "Softwares and data mining" }, - { "key": "8", "color": "#b174cb", "clusterLabel": "Project management" }, - { "key": "10", "color": "#a4923a", "clusterLabel": "Engineering" }, - { "key": "11", "color": "#5f83cc", "clusterLabel": "Semantic networks" }, - { "key": "12", "color": "#666666", "clusterLabel": "Sociometry" }, - { "key": "13", "color": "#666666", "clusterLabel": "Ideas and concepts" }, - { "key": "14", "color": "#db4139", "clusterLabel": "Arguments / Logic" }, - { "key": "15", "color": "#379982", "clusterLabel": "Scientific classification" }, - { "key": "16", "color": "#666666", "clusterLabel": "Decision trees" }, - { "key": "17", "color": "#666666", "clusterLabel": "Motion perception" }, - { "key": "18", "color": "#c94c83", "clusterLabel": "Artificial intelligence" }, - { "key": "19", "color": "#666666", "clusterLabel": "Linguistics" }, - { "key": "20", "color": "#7c5d28", "clusterLabel": "Collaborative problem solving" }, - { "key": "21", "color": "#a54a49", "clusterLabel": "Knowledge management" }, - { "key": "22", "color": "#666666", "clusterLabel": "Clinical terms and technologies" }, - { "key": "23", "color": "#cf7435", "clusterLabel": "Network Science" }, - { "key": "25", "color": "#666666", "clusterLabel": "Knots" }, - { "key": "24", "color": "#666666", "clusterLabel": "Tensors (mathematics)" } - ], - "tags": [ - { "key": "Chart type", "image": "charttype.svg" }, - { "key": "Company", "image": "company.svg" }, - { "key": "Concept", "image": "concept.svg" }, - { "key": "Field", "image": "field.svg" }, - { "key": "List", "image": "list.svg" }, - { "key": "Method", "image": "method.svg" }, - { "key": "Organization", "image": "organization.svg" }, - { "key": "Person", "image": "person.svg" }, - { "key": "Technology", "image": "technology.svg" }, - { "key": "Tool", "image": "tool.svg" }, - { "key": "unknown", "image": "unknown.svg" } - ] -} diff --git a/modules/demo/rapids-api-server/routes/example/index.js b/modules/demo/rapids-api-server/routes/example/index.js deleted file mode 100644 index cd2c47723..000000000 --- a/modules/demo/rapids-api-server/routes/example/index.js +++ /dev/null @@ -1,7 +0,0 @@ -'use strict' - -module.exports = async function (fastify, opts) { - fastify.get('/', async function (request, reply) { - return 'this is an example' - }) -} diff --git a/package.json b/package.json index 0766e28e0..678760d53 100644 --- a/package.json +++ b/package.json @@ -145,8 +145,7 @@ "**/gl-matrix": "3.3.0", "**/jsdom": "16.6.0", "**/math.gl": "3.5.7", - "**/react-map-gl": "5.3.16", - "**/react-scripts": "5.0.0" + "**/react-map-gl": "5.3.16" }, "release": { "analyzeCommits": "simple-commit-message" diff --git a/yarn.lock b/yarn.lock index 64ff90e29..7f1b80359 100644 --- a/yarn.lock +++ b/yarn.lock @@ -10,6 +10,15 @@ "@jridgewell/gen-mapping" "^0.1.0" "@jridgewell/trace-mapping" "^0.3.9" +"@apideck/better-ajv-errors@^0.3.1": + version "0.3.4" + resolved "https://registry.npmjs.org/@apideck/better-ajv-errors/-/better-ajv-errors-0.3.4.tgz#f89924dd4efd04a51835db7eb549a7177e0ca727" + integrity sha512-Ic2d8ZT6HJiSikGVQvSklaFyw1OUv4g8sDOxa0PXSlbmN/3gL5IO1WYY9DOwTDqOFmjWoqG1yaaKnPDqYCE9KA== + dependencies: + json-schema "^0.4.0" + jsonpointer "^5.0.0" + leven "^3.1.0" + "@babel/code-frame@7.12.11": version "7.12.11" resolved "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.12.11.tgz#f4ad435aa263db935b8f10f2c552d23fb716a63f" @@ -17,7 +26,7 @@ dependencies: "@babel/highlight" "^7.10.4" -"@babel/code-frame@^7.0.0", "@babel/code-frame@^7.14.5", "@babel/code-frame@^7.16.7": +"@babel/code-frame@^7.0.0", "@babel/code-frame@^7.10.4", "@babel/code-frame@^7.12.13", "@babel/code-frame@^7.14.5", "@babel/code-frame@^7.16.0", "@babel/code-frame@^7.16.7", "@babel/code-frame@^7.8.3": version "7.16.7" resolved "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.16.7.tgz#44416b6bd7624b998f5b1af5d470856c40138789" integrity sha512-iAXqUn8IIeBTNd72xsFlgaXHkMBMt6y4HJp1tIaK465CWLT/fG1aqB7ykr95gHHmlBdGbFeWWfyB4NJJ0nmeIg== @@ -50,7 +59,7 @@ semver "^6.3.0" source-map "^0.5.0" -"@babel/core@^7.1.0", "@babel/core@^7.12.3", "@babel/core@^7.7.5": +"@babel/core@^7.1.0", "@babel/core@^7.11.1", "@babel/core@^7.12.3", "@babel/core@^7.15.5", "@babel/core@^7.16.0", "@babel/core@^7.16.5", "@babel/core@^7.5.5", 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"https://registry.npmjs.org/@babel/generator/-/generator-7.18.2.tgz#33873d6f89b21efe2da63fe554460f3df1c5880d" integrity sha512-W1lG5vUwFvfMd8HVXqdfbuG7RuaSrTCCD8cl8fP8wOivdbtbIg2Db3IWUcgvfxKbbn6ZBGYRW/Zk1MIwK49mgw== @@ -140,6 +158,20 @@ resolve "^1.14.2" semver "^6.1.2" +"@babel/helper-define-polyfill-provider@^0.3.1": + version "0.3.1" + resolved "https://registry.npmjs.org/@babel/helper-define-polyfill-provider/-/helper-define-polyfill-provider-0.3.1.tgz#52411b445bdb2e676869e5a74960d2d3826d2665" + integrity sha512-J9hGMpJQmtWmj46B3kBHmL38UhJGhYX7eqkcq+2gsstyYt341HmPeWspihX43yVRA0mS+8GGk2Gckc7bY/HCmA== + dependencies: + "@babel/helper-compilation-targets" "^7.13.0" + "@babel/helper-module-imports" "^7.12.13" + "@babel/helper-plugin-utils" "^7.13.0" + "@babel/traverse" "^7.13.0" + debug "^4.1.1" + lodash.debounce "^4.0.8" + resolve "^1.14.2" + semver "^6.1.2" + "@babel/helper-environment-visitor@^7.16.7", "@babel/helper-environment-visitor@^7.18.2": version "7.18.2" resolved 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+"@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining@^7.15.4", "@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining@^7.17.12": version "7.17.12" resolved "https://registry.npmjs.org/@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining/-/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.17.12.tgz#0d498ec8f0374b1e2eb54b9cb2c4c78714c77753" integrity sha512-/vt0hpIw0x4b6BLKUkwlvEoiGZYYLNZ96CzyHYPbtG2jZGz6LBe7/V+drYrc/d+ovrF9NBi0pmtvmNb/FsWtRQ== @@ -300,7 +339,7 @@ "@babel/helper-skip-transparent-expression-wrappers" "^7.16.0" "@babel/plugin-proposal-optional-chaining" "^7.17.12" -"@babel/plugin-proposal-async-generator-functions@^7.15.4": +"@babel/plugin-proposal-async-generator-functions@^7.15.4", "@babel/plugin-proposal-async-generator-functions@^7.17.12": version "7.17.12" resolved 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sha512-B8QIgBvkIG6G2jgsOHQUist7Sm0EBLDCx8sen072IwqNuzMegZNXrYnSv77cYzA8mLDZAfQYqsLIhimiP1s2HQ== + dependencies: + "@babel/helper-plugin-utils" "^7.17.12" + +"@babel/plugin-syntax-import-assertions@^7.17.12": + version "7.17.12" + resolved "https://registry.npmjs.org/@babel/plugin-syntax-import-assertions/-/plugin-syntax-import-assertions-7.17.12.tgz#58096a92b11b2e4e54b24c6a0cc0e5e607abcedd" + integrity sha512-n/loy2zkq9ZEM8tEOwON9wTQSTNDTDEz6NujPtJGLU7qObzT1N4c4YZZf8E6ATB2AjNQg/Ib2AIpO03EZaCehw== + dependencies: + "@babel/helper-plugin-utils" "^7.17.12" + "@babel/plugin-syntax-import-meta@^7.8.3": version "7.10.4" resolved "https://registry.npmjs.org/@babel/plugin-syntax-import-meta/-/plugin-syntax-import-meta-7.10.4.tgz#ee601348c370fa334d2207be158777496521fd51" @@ -554,14 +626,21 @@ dependencies: "@babel/helper-plugin-utils" "^7.14.5" -"@babel/plugin-transform-arrow-functions@^7.14.5": +"@babel/plugin-syntax-typescript@^7.17.12", "@babel/plugin-syntax-typescript@^7.7.2": + version 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"https://registry.npmjs.org/@jest/fake-timers/-/fake-timers-27.5.1.tgz#76979745ce0579c8a94a4678af7a748eda8ada74" + integrity sha512-/aPowoolwa07k7/oM3aASneNeBGCmGQsc3ugN4u6s4C/+s5M64MFo/+djTdiwcbQlRfFElGuDXWzaWj6QgKObQ== + dependencies: + "@jest/types" "^27.5.1" + "@sinonjs/fake-timers" "^8.0.1" + "@types/node" "*" + jest-message-util "^27.5.1" + jest-mock "^27.5.1" + jest-util "^27.5.1" + "@jest/globals@^26.6.2": version "26.6.2" resolved "https://registry.npmjs.org/@jest/globals/-/globals-26.6.2.tgz#5b613b78a1aa2655ae908eba638cc96a20df720a" @@ -1434,6 +1953,15 @@ "@jest/types" "^26.6.2" expect "^26.6.2" +"@jest/globals@^27.5.1": + version "27.5.1" + resolved "https://registry.npmjs.org/@jest/globals/-/globals-27.5.1.tgz#7ac06ce57ab966566c7963431cef458434601b2b" + integrity sha512-ZEJNB41OBQQgGzgyInAv0UUfDDj3upmHydjieSxFvTRuZElrx7tXg/uVQ5hYVEwiXs3+aMsAeEc9X7xiSKCm4Q== + dependencies: + "@jest/environment" "^27.5.1" + "@jest/types" "^27.5.1" + expect "^27.5.1" + 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dependencies: + callsites "^3.0.0" + graceful-fs "^4.2.9" + source-map "^0.6.0" + "@jest/test-result@^26.6.2": version "26.6.2" resolved "https://registry.npmjs.org/@jest/test-result/-/test-result-26.6.2.tgz#55da58b62df134576cc95476efa5f7949e3f5f18" @@ -1485,6 +2060,26 @@ "@types/istanbul-lib-coverage" "^2.0.0" collect-v8-coverage "^1.0.0" +"@jest/test-result@^27.5.1": + version "27.5.1" + resolved "https://registry.npmjs.org/@jest/test-result/-/test-result-27.5.1.tgz#56a6585fa80f7cdab72b8c5fc2e871d03832f5bb" + integrity sha512-EW35l2RYFUcUQxFJz5Cv5MTOxlJIQs4I7gxzi2zVU7PJhOwfYq1MdC5nhSmYjX1gmMmLPvB3sIaC+BkcHRBfag== + dependencies: + "@jest/console" "^27.5.1" + "@jest/types" "^27.5.1" + "@types/istanbul-lib-coverage" "^2.0.0" + collect-v8-coverage "^1.0.0" + +"@jest/test-result@^28.1.0": + version "28.1.0" + resolved "https://registry.npmjs.org/@jest/test-result/-/test-result-28.1.0.tgz#fd149dee123510dd2fcadbbf5f0020f98ad7f12c" + integrity sha512-sBBFIyoPzrZho3N+80P35A5oAkSKlGfsEFfXFWuPGBsW40UAjCkGakZhn4UQK4iQlW2vgCDMRDOob9FGKV8YoQ== + dependencies: + "@jest/console" "^28.1.0" + "@jest/types" "^28.1.0" + "@types/istanbul-lib-coverage" "^2.0.0" + collect-v8-coverage "^1.0.0" + "@jest/test-sequencer@^26.6.3": version "26.6.3" resolved "https://registry.npmjs.org/@jest/test-sequencer/-/test-sequencer-26.6.3.tgz#98e8a45100863886d074205e8ffdc5a7eb582b17" @@ -1496,6 +2091,16 @@ jest-runner "^26.6.3" jest-runtime "^26.6.3" +"@jest/test-sequencer@^27.5.1": + version "27.5.1" + resolved "https://registry.npmjs.org/@jest/test-sequencer/-/test-sequencer-27.5.1.tgz#4057e0e9cea4439e544c6353c6affe58d095745b" + integrity sha512-LCheJF7WB2+9JuCS7VB/EmGIdQuhtqjRNI9A43idHv3E4KltCTsPsLxvdaubFHSYwY/fNjMWjl6vNRhDiN7vpQ== + dependencies: + "@jest/test-result" "^27.5.1" + graceful-fs "^4.2.9" + jest-haste-map "^27.5.1" + jest-runtime "^27.5.1" + "@jest/transform@^26.6.2": version "26.6.2" resolved 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+ "@types/node" "*" + jest-pnp-resolver@^1.2.2: version "1.2.2" resolved "https://registry.npmjs.org/jest-pnp-resolver/-/jest-pnp-resolver-1.2.2.tgz#b704ac0ae028a89108a4d040b3f919dfddc8e33c" @@ -8990,6 +12745,16 @@ jest-regex-util@^26.0.0: resolved "https://registry.npmjs.org/jest-regex-util/-/jest-regex-util-26.0.0.tgz#d25e7184b36e39fd466c3bc41be0971e821fee28" integrity sha512-Gv3ZIs/nA48/Zvjrl34bf+oD76JHiGDUxNOVgUjh3j890sblXryjY4rss71fPtD/njchl6PSE2hIhvyWa1eT0A== +jest-regex-util@^27.5.1: + version "27.5.1" + resolved "https://registry.npmjs.org/jest-regex-util/-/jest-regex-util-27.5.1.tgz#4da143f7e9fd1e542d4aa69617b38e4a78365b95" + integrity sha512-4bfKq2zie+x16okqDXjXn9ql2B0dScQu+vcwe4TvFVhkVyuWLqpZrZtXxLLWoXYgn0E87I6r6GRYHF7wFZBUvg== + +jest-regex-util@^28.0.0: + version "28.0.2" + resolved "https://registry.npmjs.org/jest-regex-util/-/jest-regex-util-28.0.2.tgz#afdc377a3b25fb6e80825adcf76c854e5bf47ead" + integrity 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integrity sha512-D1mvvtDG0L5ft/jGWkLpG1+m0eQxOfaBvTNELraWj22wSVUMWxZUvYgJYcKh6jGGIkJFhH4IZPQhR4TKpc8mBw== + dependencies: + cliui "^7.0.2" + escalade "^3.1.1" + get-caller-file "^2.0.5" + require-directory "^2.1.1" + string-width "^4.2.0" + y18n "^5.0.5" + yargs-parser "^20.2.2" + yargs@^14.2.2: version "14.2.3" resolved "https://registry.npmjs.org/yargs/-/yargs-14.2.3.tgz#1a1c3edced1afb2a2fea33604bc6d1d8d688a414" @@ -14673,7 +21306,7 @@ yargs@^14.2.2: y18n "^4.0.0" yargs-parser "^15.0.1" -yargs@^15.4.1: +yargs@^15.0.2, yargs@^15.3.1, yargs@^15.4.1: version "15.4.1" resolved "https://registry.npmjs.org/yargs/-/yargs-15.4.1.tgz#0d87a16de01aee9d8bec2bfbf74f67851730f4f8" integrity sha512-aePbxDmcYW++PaqBsJ+HYUFwCdv4LVvdnhBy78E57PIor8/OVvhMrADFFEDh8DHDFRv/O9i3lPhsENjO7QX0+A== @@ -14690,18 +21323,18 @@ yargs@^15.4.1: y18n "^4.0.0" yargs-parser "^18.1.2" -yargs@^16.0.3: - version "16.2.0" - resolved "https://registry.npmjs.org/yargs/-/yargs-16.2.0.tgz#1c82bf0f6b6a66eafce7ef30e376f49a12477f66" - integrity sha512-D1mvvtDG0L5ft/jGWkLpG1+m0eQxOfaBvTNELraWj22wSVUMWxZUvYgJYcKh6jGGIkJFhH4IZPQhR4TKpc8mBw== +yargs@^17.0.1: + version "17.5.1" + resolved "https://registry.npmjs.org/yargs/-/yargs-17.5.1.tgz#e109900cab6fcb7fd44b1d8249166feb0b36e58e" + integrity sha512-t6YAJcxDkNX7NFYiVtKvWUz8l+PaKTLiL63mJYWR2GnHq2gjEWISzsLp9wg3aY36dY1j+gfIEL3pIF+XlJJfbA== dependencies: cliui "^7.0.2" escalade "^3.1.1" get-caller-file "^2.0.5" require-directory "^2.1.1" - string-width "^4.2.0" + string-width "^4.2.3" y18n "^5.0.5" - yargs-parser "^20.2.2" + yargs-parser "^21.0.0" yargs@^3.6.0: version "3.32.0" @@ -14716,6 +21349,14 @@ yargs@^3.6.0: window-size "^0.1.4" y18n "^3.2.0" +yauzl@^2.10.0: + version "2.10.0" + resolved "https://registry.npmjs.org/yauzl/-/yauzl-2.10.0.tgz#c7eb17c93e112cb1086fa6d8e51fb0667b79a5f9" + integrity sha1-x+sXyT4RLLEIb6bY5R+wZnt5pfk= + dependencies: + buffer-crc32 "~0.2.3" + fd-slicer "~1.1.0" + yeast@0.1.2: version "0.1.2" resolved "https://registry.npmjs.org/yeast/-/yeast-0.1.2.tgz#008e06d8094320c372dbc2f8ed76a0ca6c8ac419" @@ -14731,6 +21372,13 @@ yocto-queue@^0.1.0: resolved "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz#0294eb3dee05028d31ee1a5fa2c556a6aaf10a1b" integrity sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q== +yoga-layout-prebuilt@^1.9.6: + version "1.10.0" + resolved "https://registry.npmjs.org/yoga-layout-prebuilt/-/yoga-layout-prebuilt-1.10.0.tgz#2936fbaf4b3628ee0b3e3b1df44936d6c146faa6" + integrity sha512-YnOmtSbv4MTf7RGJMK0FvZ+KD8OEe/J5BNnR0GHhD8J/XcG/Qvxgszm0Un6FTHWW4uHlTgP0IztiXQnGyIR45g== + dependencies: + "@types/yoga-layout" "1.9.2" + zeromq@6.0.0-beta.6: version "6.0.0-beta.6" resolved "https://registry.npmjs.org/zeromq/-/zeromq-6.0.0-beta.6.tgz#2b8934cafce735ea9007fd3074ec8aca9bf11204" From 9ebc1dad992e1ead559346eeb2dff2d8bb5afe7c Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Mon, 6 Jun 2022 13:55:32 -0500 Subject: [PATCH 37/68] Don't want a sigma.js submodule atm. --- modules/demo/sigma.js | 1 - 1 file changed, 1 deletion(-) delete mode 160000 modules/demo/sigma.js diff --git a/modules/demo/sigma.js b/modules/demo/sigma.js deleted file mode 160000 index e11ff5615..000000000 --- a/modules/demo/sigma.js +++ /dev/null @@ -1 +0,0 @@ -Subproject commit e11ff5615249a75d6f2b1367420ce68c99463271 From b5e98d1ded3006ff0fdcacbfde29380aae621045 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Mon, 6 Jun 2022 15:48:18 -0500 Subject: [PATCH 38/68] Cleaning up to support Arrow. --- modules/demo/rapids-api-server/README.md | 25 ++++--------------- modules/demo/rapids-api-server/package.json | 3 +-- .../routes/graphology/index.js | 19 ++++++-------- 3 files changed, 14 insertions(+), 33 deletions(-) diff --git a/modules/demo/rapids-api-server/README.md b/modules/demo/rapids-api-server/README.md index d3497b90f..d73cc268d 100644 --- a/modules/demo/rapids-api-server/README.md +++ b/modules/demo/rapids-api-server/README.md @@ -1,23 +1,8 @@ -# Getting Started with Fastify-CLI [Fastify-CLI](https://www.npmjs.com/package/fastify-cli) -This project was bootstrapped with Fastify-CLI. +# node-rapids/rapids-api-server -## Available Scripts - -In the project directory, you can run: - -### `npm run dev` - -To start the app in dev mode.\ -Open [http://localhost:3000](http://localhost:3000) to view it in the browser. - -### `npm start` +This project defines a Fastify-based node http server that allows +commands and data to be sent to and from the NVIDIA GPUs installed +on the host machine. -For production mode - -### `npm run test` - -Run the test cases. - -## Learn More +## Available Scripts -To learn Fastify, check out the [Fastify documentation](https://www.fastify.io/docs/latest/). diff --git a/modules/demo/rapids-api-server/package.json b/modules/demo/rapids-api-server/package.json index 95d4f85da..86fe946cf 100644 --- a/modules/demo/rapids-api-server/package.json +++ b/modules/demo/rapids-api-server/package.json @@ -8,8 +8,7 @@ }, "scripts": { "test": "tap \"test/**/*.test.js\"", - "build": "tsc -p ./tsconfig.json", - "start": "npm run build; fastify start -l info -P -w app.js", + "start": "fastify start -l info -P -w app.js", "dev": "fastify start -w -l info -P app.js" }, "keywords": ["rapids.ai", "node", "NVIDIA", "gpu", "Dataframe", "pandas"], diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index 7d5e64aac..5ae8c8035 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -249,21 +249,20 @@ module.exports = async function(fastify, opts) { reply.code(404).send(result); } else { // tile x, y, size, color - let tiled = Series.sequence({type: new Float32, init: 0.0, size: (4 * df.numRows)}); - let base_offset = - Series.sequence({type: new Int32, init: 0.0, size: df.numRows}).mul(4); + let tiled = Series.sequence({type: new Float32, init: 0.0, size: (4 * df.numRows)}); + let base_offset = Series.sequence({type: new Int32, init: 0.0, size: df.numRows}).mul(4); // // Duplicatin the sigma.j createNormalizationFunction here because there's no other way // to let the Graph object compute it. // - let x = df.get('x'); - let y = df.get('y'); - let color = df.get('color'); + let x = df.get('x'); + let y = df.get('y'); + let color = df.get('color'); const ratio = () => { const [xMin, xMax] = x.minmax(); const [yMin, yMax] = y.minmax(); Math.max(xMax - xMin, yMax - yMin); - })(); + }; const dX = x.minmax().reduce((min, max) => max + min, 0) / 2.0; const dY = y.minmax().reduce((min, max) => max + min, 0) / 2.0; x = x.add(-1.0 * dX).mul(1.0 / ratio).add(0.5); @@ -271,13 +270,11 @@ module.exports = async function(fastify, opts) { // done with createNormalizationFunction tiled = tiled.scatter(x, base_offset.cast(new Int32)); tiled = tiled.scatter(y, base_offset.add(1).cast(new Int32)); - tiled = tiled.scatter(df.get('size').mul(2), - base_offset.add(2).cast(new Int32)); + tiled = tiled.scatter(df.get('size').mul(2), base_offset.add(2).cast(new Int32)); color = color.hexToIntegers(new Uint32).bitwiseOr(0xff000000); // color = Series.sequence({size: color.length, type: new Int32, init: 0xff0000ff, step: // 0}); - tiled = tiled.scatter(color.view(new Float32), - base_offset.add(3).cast(new Int32)); + tiled = tiled.scatter(color.view(new Float32), base_offset.add(3).cast(new Int32)); const writer = RecordBatchStreamWriter.writeAll(new DataFrame({nodes: tiled}).toArrow()); reply.code(200).send(writer.toNodeStream()); } From b7caea034f2f0fd60310a0ddb73b44d180ce90a5 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Tue, 7 Jun 2022 13:13:05 -0500 Subject: [PATCH 39/68] Force typescript to 4.6.4 for now, due to an autoformatting problem that made building impossible. --- package.json | 3 +- yarn.lock | 6495 +++----------------------------------------------- 2 files changed, 296 insertions(+), 6202 deletions(-) diff --git a/package.json b/package.json index 678760d53..8e6c8279c 100644 --- a/package.json +++ b/package.json @@ -145,7 +145,8 @@ "**/gl-matrix": "3.3.0", "**/jsdom": "16.6.0", "**/math.gl": "3.5.7", - "**/react-map-gl": "5.3.16" + "**/react-map-gl": "5.3.16", + "**/typescript": "4.6.4" }, "release": { "analyzeCommits": "simple-commit-message" diff --git a/yarn.lock b/yarn.lock index 7f1b80359..c776a3469 100644 --- a/yarn.lock +++ b/yarn.lock @@ -10,15 +10,6 @@ "@jridgewell/gen-mapping" "^0.1.0" "@jridgewell/trace-mapping" "^0.3.9" -"@apideck/better-ajv-errors@^0.3.1": - version "0.3.4" - resolved 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"https://registry.npmjs.org/yargs/-/yargs-14.2.3.tgz#1a1c3edced1afb2a2fea33604bc6d1d8d688a414" @@ -21306,7 +15407,7 @@ yargs@^14.2.2: y18n "^4.0.0" yargs-parser "^15.0.1" -yargs@^15.0.2, yargs@^15.3.1, yargs@^15.4.1: +yargs@^15.0.2, yargs@^15.4.1: version "15.4.1" resolved "https://registry.npmjs.org/yargs/-/yargs-15.4.1.tgz#0d87a16de01aee9d8bec2bfbf74f67851730f4f8" integrity sha512-aePbxDmcYW++PaqBsJ+HYUFwCdv4LVvdnhBy78E57PIor8/OVvhMrADFFEDh8DHDFRv/O9i3lPhsENjO7QX0+A== @@ -21323,18 +15424,18 @@ yargs@^15.0.2, yargs@^15.3.1, yargs@^15.4.1: y18n "^4.0.0" yargs-parser "^18.1.2" -yargs@^17.0.1: - version "17.5.1" - resolved "https://registry.npmjs.org/yargs/-/yargs-17.5.1.tgz#e109900cab6fcb7fd44b1d8249166feb0b36e58e" - integrity sha512-t6YAJcxDkNX7NFYiVtKvWUz8l+PaKTLiL63mJYWR2GnHq2gjEWISzsLp9wg3aY36dY1j+gfIEL3pIF+XlJJfbA== +yargs@^16.0.3: + version "16.2.0" + resolved "https://registry.npmjs.org/yargs/-/yargs-16.2.0.tgz#1c82bf0f6b6a66eafce7ef30e376f49a12477f66" + integrity sha512-D1mvvtDG0L5ft/jGWkLpG1+m0eQxOfaBvTNELraWj22wSVUMWxZUvYgJYcKh6jGGIkJFhH4IZPQhR4TKpc8mBw== dependencies: cliui "^7.0.2" escalade "^3.1.1" get-caller-file "^2.0.5" require-directory "^2.1.1" - string-width "^4.2.3" + string-width "^4.2.0" y18n "^5.0.5" - yargs-parser "^21.0.0" + yargs-parser "^20.2.2" yargs@^3.6.0: version "3.32.0" @@ -21349,14 +15450,6 @@ yargs@^3.6.0: window-size "^0.1.4" y18n "^3.2.0" -yauzl@^2.10.0: - version "2.10.0" - resolved "https://registry.npmjs.org/yauzl/-/yauzl-2.10.0.tgz#c7eb17c93e112cb1086fa6d8e51fb0667b79a5f9" - integrity sha1-x+sXyT4RLLEIb6bY5R+wZnt5pfk= - dependencies: - buffer-crc32 "~0.2.3" - fd-slicer "~1.1.0" - yeast@0.1.2: version "0.1.2" resolved "https://registry.npmjs.org/yeast/-/yeast-0.1.2.tgz#008e06d8094320c372dbc2f8ed76a0ca6c8ac419" From aaa46322d503366a6b594aea3f430392d9292bab Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Wed, 8 Jun 2022 14:47:49 -0500 Subject: [PATCH 40/68] Fix routing for apache arrow in two demo modules and fixes for rapids-api-server. --- modules/cudf/src/data_frame.ts | 2 +- modules/demo/client-server/next.config.js | 2 +- .../rapids-api-server/routes/graphology/index.js | 14 +++++++------- modules/demo/sql/sql-cluster-server/next.config.js | 2 +- package.json | 2 +- yarn.lock | 6 +++--- 6 files changed, 14 insertions(+), 14 deletions(-) diff --git a/modules/cudf/src/data_frame.ts b/modules/cudf/src/data_frame.ts index 5174691de..e94c837e7 100644 --- a/modules/cudf/src/data_frame.ts +++ b/modules/cudf/src/data_frame.ts @@ -548,7 +548,7 @@ export class DataFrame { const table = includeNulls ? df.asTable().explodeOuter(i, mr) // : df.asTable().explode(i, mr); return DataFrame.fromTable(table, this.names as any); - }, [this]) ; + }, [this]) as any; }, new DataFrame<{ // clang-format off diff --git a/modules/demo/client-server/next.config.js b/modules/demo/client-server/next.config.js index 64e56d51e..598d3758c 100644 --- a/modules/demo/client-server/next.config.js +++ b/modules/demo/client-server/next.config.js @@ -20,7 +20,7 @@ module.exports = { 'apache-arrow': 'apache-arrow' }); } else { - config.resolve.alias['apache-arrow'] = require.resolve('apache-arrow/Arrow.es2015.min.js'); + config.resolve.alias['apache-arrow'] = require.resolve('apache-arrow/Arrow.es2015.min'); } // console.log(require('util').inspect({ isServer, config }, false, Infinity, true)); // Important: return the modified config diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index 5ae8c8035..8b79a8b7d 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -258,15 +258,15 @@ module.exports = async function(fastify, opts) { let x = df.get('x'); let y = df.get('y'); let color = df.get('color'); - const ratio = () => { + const ratio = (() => { const [xMin, xMax] = x.minmax(); const [yMin, yMax] = y.minmax(); - Math.max(xMax - xMin, yMax - yMin); - }; - const dX = x.minmax().reduce((min, max) => max + min, 0) / 2.0; - const dY = y.minmax().reduce((min, max) => max + min, 0) / 2.0; - x = x.add(-1.0 * dX).mul(1.0 / ratio).add(0.5); - y = y.add(-1.0 * dY).mul(1.0 / ratio).add(0.5); + return Math.max(xMax - xMin, yMax - yMin); + })(); + const dX = x.minmax().reduce((min, max) => max + min, 0) / 2.0; + const dY = y.minmax().reduce((min, max) => max + min, 0) / 2.0; + x = x.add(-1.0 * dX).mul(1.0 / ratio).add(0.5); + y = y.add(-1.0 * dY).mul(1.0 / ratio).add(0.5); // done with createNormalizationFunction tiled = tiled.scatter(x, base_offset.cast(new Int32)); tiled = tiled.scatter(y, base_offset.add(1).cast(new Int32)); diff --git a/modules/demo/sql/sql-cluster-server/next.config.js b/modules/demo/sql/sql-cluster-server/next.config.js index 982fedd7a..9acb5c77e 100644 --- a/modules/demo/sql/sql-cluster-server/next.config.js +++ b/modules/demo/sql/sql-cluster-server/next.config.js @@ -4,7 +4,7 @@ module.exports = { }, webpack: (config, {buildId, dev, isServer, defaultLoaders, webpack}) => { if (!isServer) { - config.resolve.alias['apache-arrow'] = require.resolve('apache-arrow/Arrow.es2015.min.js'); + config.resolve.alias['apache-arrow'] = require.resolve('apache-arrow/Arrow.es2015.min'); } return config; }, diff --git a/package.json b/package.json index 8e6c8279c..a516a40e3 100644 --- a/package.json +++ b/package.json @@ -146,7 +146,7 @@ "**/jsdom": "16.6.0", "**/math.gl": "3.5.7", "**/react-map-gl": "5.3.16", - "**/typescript": "4.6.4" + "**/typescript": "4.5.5" }, "release": { "analyzeCommits": "simple-commit-message" diff --git a/yarn.lock b/yarn.lock index c776a3469..e96163846 100644 --- a/yarn.lock +++ b/yarn.lock @@ -14638,9 +14638,9 @@ typedoc@0.22.10: shiki "^0.9.12" typescript@4.5.5, typescript@4.6.4: - version "4.6.4" - resolved "https://registry.npmjs.org/typescript/-/typescript-4.6.4.tgz#caa78bbc3a59e6a5c510d35703f6a09877ce45e9" - integrity sha512-9ia/jWHIEbo49HfjrLGfKbZSuWo9iTMwXO+Ca3pRsSpbsMbc7/IU8NKdCZVRRBafVPGnoJeFL76ZOAA84I9fEg== + version "4.5.5" + resolved "https://registry.npmjs.org/typescript/-/typescript-4.5.5.tgz#d8c953832d28924a9e3d37c73d729c846c5896f3" + integrity sha512-TCTIul70LyWe6IJWT8QSYeA54WQe8EjQFU4wY52Fasj5UKx88LNYKCgBEHcOMOrFF1rKGbD8v/xcNWVUq9SymA== typical@^4.0.0: version "4.0.0" From 352b13c36604ff707941a8006de93a6e235ee445 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Mon, 13 Jun 2022 17:57:39 -0500 Subject: [PATCH 41/68] Fixing up API server by adding tests! --- lerna.json | 1 + modules/demo/rapids-api-server/README.md | 7 +- .../routes/graphology/index.js | 181 +++++++++--------- .../test/plugins/support.test.js | 22 --- .../test/routes/example.test.js | 42 ++-- .../test/routes/root.test.js | 42 ++-- 6 files changed, 137 insertions(+), 158 deletions(-) delete mode 100644 modules/demo/rapids-api-server/test/plugins/support.test.js diff --git a/lerna.json b/lerna.json index f8de4aba7..de72e9046 100644 --- a/lerna.json +++ b/lerna.json @@ -18,6 +18,7 @@ "modules/demo/sigma.js", "modules/demo/sigma.js/examples", "modules/demo/rapids-api-server", + "modules/demo/rapids-api-server", "modules/demo/viz-app", "modules/demo/sql/*" ] diff --git a/modules/demo/rapids-api-server/README.md b/modules/demo/rapids-api-server/README.md index d73cc268d..5501b319a 100644 --- a/modules/demo/rapids-api-server/README.md +++ b/modules/demo/rapids-api-server/README.md @@ -4,5 +4,10 @@ This project defines a Fastify-based node http server that allows commands and data to be sent to and from the NVIDIA GPUs installed on the host machine. -## Available Scripts +## Routes + +/ +/graphology +/graphology/read_json +/graphology/:table/:column diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index 8b79a8b7d..2b026a828 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -25,7 +25,44 @@ const fastify = require('fastify') const arrowPlugin = require('fastify-arrow'); const gpu_cache = require('../../util/gpu_cache.js'); -module.exports = async function(fastify, opts) { +const findLocalFile = + async function(query) { + let message = 'Unknown error'; + let path = undefined; + let result = {'params': JSON.stringify(query), success: false, message: message}; + if (query.filename === undefined) { + message = 'Parameter filename is required' + result.message = message; + } else if (query.filename.search('http') != -1) { + message = 'Remote files not supported yet.' + result.message = message; + } else { + message = 'File is not remote'; + // does the file exist? + const path = Path.join(__dirname, query.filename); + console.log('Does the file exist?'); + try { + const stats = await Stat(path); + if (stats == null) { + message = 'File does not exist at ' + path; + console.log(message); + result.message = message; + } else { + // did the file read? + message = 'File is available'; + console.log(message); + } + } catch (e) { + message = 'Exception finding file.'; + result.message = message; + result.error = e; + return result; + }; + } + return {path: path, result: result}; +} + + module.exports = async function(fastify, opts) { fastify.register(arrowPlugin); fastify.register(fastifyCors, {origin: 'http://localhost:3002'}); fastify.get('/', async function(request, reply) { @@ -35,20 +72,35 @@ module.exports = async function(fastify, opts) { schema: { read_json: { filename: 'A URI to a graphology json dataset file.', + result: `Causes the node-rapids backend to attempt to load the json object specified + by :filename. The GPU with attempt to parse the json file asynchronously and will + return OK/ Not Found/ or Fail based on the file status. + If the load is successful, three tables will be created in the node-rapids backend: + nodes, edges, clusters, and tags. The root objects in the json target must match + these names and order.`, returns: 'Result OK/Not Found/Fail' }, read_large_demo: { filename: - 'A URI to a graphology json dataset file matching the examples/large-demos spec.', + 'A URI to a graphology json dataset file matching the sigma.js/examples/large-demos spec.', + result: `Produces the same result as 'read_json'. + If the load is successful, three tables will be created in the node-rapids backend: + nodes, edges, and options.`, returns: 'Result OK/Not Found/Fail' }, - list_tables: - {returns: 'An object containing graphology related datasets resident on GPU memory.'}, - - ':table': { - ':column': 'The name of the column you want to request.', - returns: 'An arrow buffer of the column contents.' - } + list_tables: {returns: 'Tables that are available presently in GPU memory.'}, + get_table: { + ':table': + {table: 'The name of the table that has been allocated previously into GPU memory.'} + }, + get_column: {':table': {':column': {table: 'The table name', column: 'The column name'}}}, + nodes: { + returns: + 'Returns the existing nodes table after applying normalization functions for sigma.js' + }, + nodes: {bounds: {returns: 'Returns the x and y bounds to be used in rendering.'}}, + edges: + {return: 'Returns the existing edges table after applying normalization for sigma.js'} } } } @@ -71,49 +123,18 @@ module.exports = async function(fastify, opts) { handler: async (request, reply) => { // load the file via read_text // is the file local or remote? - let message = 'Unknown error'; - let result = {'params': JSON.stringify(request.query), success: false, message: message}; - - console.log(result); - if (request.query.filename.search('http') != -1) { - message = 'Remote files not supported yet.' - console.log(result); - } else { - message = 'File is not remote'; - // does the file exist? - const path = Path.join(__dirname, request.query.filename); - console.log('Does the file exist?'); - try { - const stats = await Stat(path); - if (stats == null) { - message = 'File does not exist at ' + path; - console.log(message); - result.message = message; - reply.code(200).send(result); - } else { - // did the file read? - message = 'File is available'; - console.log(message); - result.success = true; - message = 'Successfully parsed json file onto GPU.'; - result.message = message; - try { - const graphology = gpu_cache.readLargeGraphDemo(path); - gpu_cache.setDataframe('nodes', graphology['nodes']); - gpu_cache.setDataframe('edges', graphology['edges']); - gpu_cache.setDataframe('options', graphology['options']); - reply.code(200).send(result); - } catch (e) { - message = 'Exception loading dataset onto gpu.'; - result.message = message; - reply.code(500).send(result); - } - } - } catch (e) { - message = 'Exception reading file.'; - result.message = e; - reply.code(500).send(result); - }; + const result = findLocalFile(request.query); + const path = file.path; + try { + const graphology = gpu_cache.readLargeGraphDemo(path); + gpu_cache.setDataframe('nodes', graphology['nodes']); + gpu_cache.setDataframe('edges', graphology['edges']); + gpu_cache.setDataframe('options', graphology['options']); + result.message = 'Ok'; + reply.code(200).send(result); + } catch (e) { + result.message = 'Exception loading dataset onto gpu.'; + reply.code(500).send(result); } } }); @@ -133,47 +154,21 @@ module.exports = async function(fastify, opts) { } }, handler: async (request, reply) => { - // load the file via read_text - // is the file local or remote? - let message = 'Unknown error'; - let result = {'params': JSON.stringify(request.query), success: false, message: message}; - - console.log(result); - if (request.query.filename.search('http') != -1) { - message = 'Remote files not supported yet.' - console.log(result); - } else { - message = 'File is not remote'; - // does the file exist? - const path = Path.join(__dirname, request.query.filename); - console.log('Does the file exist?'); - try { - const stats = await Stat(path); - if (stats == null) { - message = 'File does not exist at ' + path; - console.log(message); - result.message = message; - reply.code(200).send(result); - } else { - // did the file read? - message = 'File is available'; - console.log(message); - result.success = true; - message = 'Successfully parsed json file onto GPU.'; - result.message = message; - const graphology = gpu_cache.readGraphology(path); - gpu_cache.setDataframe('nodes', graphology['nodes']); - gpu_cache.setDataframe('edges', graphology['edges']); - gpu_cache.setDataframe('clusters', graphology['clusters']); - gpu_cache.setDataframe('tags', graphology['tags']); - reply.code(200).send(result); - } - } catch (e) { - message = 'Exception reading file.'; - result.message = e; - reply.code(200).send(result); - }; - } + const result = findLocalFile(request.query); + const path = result.path; + try { + const graphology = gpu_cache.readGraphology(path); + gpu_cache.setDataframe('nodes', graphology['nodes']); + gpu_cache.setDataframe('edges', graphology['edges']); + gpu_cache.setDataframe('clusters', graphology['clusters']); + gpu_cache.setDataframe('tags', graphology['tags']); + reply.code(200).send(result); + } catch (e) { + message = 'Exception reading file.'; + result.message = message; + result.error = e; + reply.code(500).send(result); + }; } }); diff --git a/modules/demo/rapids-api-server/test/plugins/support.test.js b/modules/demo/rapids-api-server/test/plugins/support.test.js deleted file mode 100644 index 863cc6c10..000000000 --- a/modules/demo/rapids-api-server/test/plugins/support.test.js +++ /dev/null @@ -1,22 +0,0 @@ -'use strict' - -const {test} = require('tap') -const Fastify = require('fastify') -const Support = require('../../plugins/support') - -describe('gpu_cache tests', - async (t) => { - test('support works standalone', async (t) => { console.log('Gpu cache caches'); })}); - -// You can also use plugin with opts in fastify v2 -// -// test('support works standalone', (t) => { -// t.plan(2) -// const fastify = Fastify() -// fastify.register(Support) -// -// fastify.ready((err) => { -// t.error(err) -// t.equal(fastify.someSupport(), 'hugs') -// }) -// }) diff --git a/modules/demo/rapids-api-server/test/routes/example.test.js b/modules/demo/rapids-api-server/test/routes/example.test.js index 11cb01a66..0f2b91efe 100644 --- a/modules/demo/rapids-api-server/test/routes/example.test.js +++ b/modules/demo/rapids-api-server/test/routes/example.test.js @@ -1,27 +1,27 @@ 'use strict' -const { test } = require('tap') -const { build } = require('../helper') +const {test} = require('tap') +const {build} = require('../helper') -test('example is loaded', async (t) => { +test('root returns API description', async (t) => { const app = await build(t) - const res = await app.inject({ - url: '/example' - }) - t.equal(res.payload, 'this is an example') + const res = await app.inject({url: '/'}) + t.same(JSON.parse(res.payload), { + 'graphology': { + 'description': 'The graphology api provides GPU acceleration of graphology datasets.', + 'schema': { + 'read_json': { + 'filename': 'A URI to a graphology json dataset file.', + 'returns': 'Result OK/Not Found/Fail' + }, + 'list_tables': + {'returns': 'An object containing graphology related datasets resident on GPU memory.'}, + ':table': { + ':column': 'The name of the column you want to request.', + 'returns': 'An arrow buffer of the column contents.' + } + } + } + }); }) - -// inject callback style: -// -// test('example is loaded', (t) => { -// t.plan(2) -// const app = await build(t) -// -// app.inject({ -// url: '/example' -// }, (err, res) => { -// t.error(err) -// t.equal(res.payload, 'this is an example') -// }) -// }) diff --git a/modules/demo/rapids-api-server/test/routes/root.test.js b/modules/demo/rapids-api-server/test/routes/root.test.js index f4d3b19b8..0f2b91efe 100644 --- a/modules/demo/rapids-api-server/test/routes/root.test.js +++ b/modules/demo/rapids-api-server/test/routes/root.test.js @@ -1,27 +1,27 @@ 'use strict' -const { test } = require('tap') -const { build } = require('../helper') +const {test} = require('tap') +const {build} = require('../helper') -test('default root route', async (t) => { +test('root returns API description', async (t) => { const app = await build(t) - const res = await app.inject({ - url: '/' - }) - t.same(JSON.parse(res.payload), { root: true }) + const res = await app.inject({url: '/'}) + t.same(JSON.parse(res.payload), { + 'graphology': { + 'description': 'The graphology api provides GPU acceleration of graphology datasets.', + 'schema': { + 'read_json': { + 'filename': 'A URI to a graphology json dataset file.', + 'returns': 'Result OK/Not Found/Fail' + }, + 'list_tables': + {'returns': 'An object containing graphology related datasets resident on GPU memory.'}, + ':table': { + ':column': 'The name of the column you want to request.', + 'returns': 'An arrow buffer of the column contents.' + } + } + } + }); }) - -// inject callback style: -// -// test('default root route', (t) => { -// t.plan(2) -// const app = await build(t) -// -// app.inject({ -// url: '/' -// }, (err, res) => { -// t.error(err) -// t.same(JSON.parse(res.payload), { root: true }) -// }) -// }) From 4b5bbbd7deb735b71af77ec565d8a50bfc4f4286 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Wed, 15 Jun 2022 10:48:29 -0500 Subject: [PATCH 42/68] Wrote most of the tests. Stuck on one that is appearing a hang, but I can't figure out which one it is. --- .../test/plugins/gpu_cache.test.ts | 94 ++++++++++ .../test/routes/graphology.test.js | 163 ++++++++++++++++++ 2 files changed, 257 insertions(+) create mode 100644 modules/demo/rapids-api-server/test/plugins/gpu_cache.test.ts create mode 100644 modules/demo/rapids-api-server/test/routes/graphology.test.js diff --git a/modules/demo/rapids-api-server/test/plugins/gpu_cache.test.ts b/modules/demo/rapids-api-server/test/plugins/gpu_cache.test.ts new file mode 100644 index 000000000..d93f3220e --- /dev/null +++ b/modules/demo/rapids-api-server/test/plugins/gpu_cache.test.ts @@ -0,0 +1,94 @@ +'use strict' + +const {test} = require('tap') +const Fastify = require('fastify') +const Support = require('../../plugins/support') +const {StringSeries} = require('@rapidsai/cudf'); + +test('clearCachedGPUData()', async (t) => { + const gpuCache = require('../../util/gpu_cache.js'); + gpuCache.setDataframe('bob', 5); + t.equal(gpuCache.getDataframe('bob'), 5); +}); + +test('readLargeGraphDemo', (t) => { + const gpuCache = + t.mock('../../util/gpu_cache.js', {'StringSeries': {read_text: (path, delim) => path}}) + gpuCache.readLargeGraphDemo( + `{ + 'attributes': {}, + 'nodes': + [ + { + 'key': '0', + 'attributes': { + 'cluster': 1, + 'x': 2.1690608678749332, + 'y': -0.3294237082577565, + 'size': 0.3333333333333333, + 'label': 'Node n°1, in cluster n°1', + 'color': '#486add' + } + }, + { + 'key': '1', + 'attributes': { + 'cluster': 2, + 'x': 1.535086271659372, + 'y': 1.5674358572750524, + 'size': 1, + 'label': 'Node n°2, in cluster n°2', + 'color': '#71b952' + } + }, + ], + 'edges': + [ + {'key': 'geid_99_0', 'source': '2', 'target': '1'}, + {'key': 'geid_99_1', 'source': '4', 'target': '1'}, + ], + 'options': {'type': 'mixed', 'multi': false, 'allowSelfLoops': true} +}`) +}); + test('readGraphology', async (t) => { + const gpuCache = + t.mock('../../util/gpu_cache.js', {StringSeries: {read_text: (path, delim) => path}}) + gpuCache.readGraphology( + ` +{ + "nodes": [ + { + "key": "customer data management", + "label": "Customer data management", + "tag": "Field", + "URL": "https://en.wikipedia.org/wiki/Customer%20data%20management", + "cluster": "7", + "x": -278.2200012207031, + "y": 436.0100402832031, + "score": 0 + }, + { + "key": "educational data mining", + "label": "Educational data mining", + "tag": "Field", + "URL": "https://en.wikipedia.org/wiki/Educational%20data%20mining", + "cluster": "7", + "x": -1.9823756217956543, + "y": 250.4990692138672, + "score": 0 + }, + ], + "edges": [ + ["office suite", "human interactome"], + ["educational data mining", "human interactome"], + ], + "clusters": [ + { "key": "0", "color": "#6c3e81", "clusterLabel": "human interactome" }, + { "key": "1", "color": "#666666", "clusterLabel": "Spreadsheets" }, + ], + "tags": [ + { "key": "Chart type", "image": "charttype.svg" }, + { "key": "Company", "image": "company.svg" }, + ] +}`); + }); diff --git a/modules/demo/rapids-api-server/test/routes/graphology.test.js b/modules/demo/rapids-api-server/test/routes/graphology.test.js new file mode 100644 index 000000000..0668e40ec --- /dev/null +++ b/modules/demo/rapids-api-server/test/routes/graphology.test.js @@ -0,0 +1,163 @@ +'use strict' + +const {test} = require('tap') +const {build} = require('../helper') +const path = require('path'); +const {StringSeries} = require('@rapidsai/cudf'); +const {stringify} = require('querystring'); + +test('graphology root returns api description', async (t) => { + const app = await build(t) + + const res = await app.inject({url: '/graphology'}) + t.same(JSON.parse(res.payload), { + graphology: { + description: 'The graphology api provides GPU acceleration of graphology datasets.', + schema: { + read_json: { + filename: 'A URI to a graphology json dataset file.', + result: `Causes the node-rapids backend to attempt to load the json object specified + by :filename. The GPU with attempt to parse the json file asynchronously and will + return OK/ Not Found/ or Fail based on the file status. + If the load is successful, three tables will be created in the node-rapids backend: + nodes, edges, clusters, and tags. The root objects in the json target must match + these names and order.`, + returns: 'Result OK/Not Found/Fail' + }, + read_large_demo: { + filename: + 'A URI to a graphology json dataset file matching the sigma.js/examples/large-demos spec.', + result: `Produces the same result as 'read_json'. + If the load is successful, three tables will be created in the node-rapids backend: + nodes, edges, and options.`, + returns: 'Result OK/Not Found/Fail' + }, + list_tables: {returns: 'Tables that are available presently in GPU memory.'}, + get_table: { + ':table': + {table: 'The name of the table that has been allocated previously into GPU memory.'} + }, + get_column: {':table': {':column': {table: 'The table name', column: 'The column name'}}}, + nodes: { + returns: + 'Returns the existing nodes table after applying normalization functions for sigma.js' + }, + nodes: {bounds: {returns: 'Returns the x and y bounds to be used in rendering.'}}, + edges: + {return: 'Returns the existing edges table after applying normalization for sigma.js'} + } + } + }); +}); + +test('read_json no filename', async (t) => { + const app = await build(t) + +const res = await app.inject({url: '/graphology/read_json'}) + t.same( + JSON.parse(res.payload), + {result: {message: 'Parameter filename is required', params: '{}', success: false, code: 400}}) +}); + + test('read_json no file', async (t) => { + const app = await build(t) + const res = await app.inject({url: '/graphology/read_json?filename=filenotfound.txt'}); + const payload = JSON.parse(res.payload).result; + t.ok(payload.message.includes('File does not exist')) + t.equal(payload.code, 400) + t.equal(payload.success, false) + }); + + test('read_json incorrect format', {saveFixture: true}, async (t) => { + const dir = t.testdir({ + 'json_bad.txt': ` +{ + "nodes": [ + { + "key": "customer data management", + "label": "Customer data management", + "cluster": "7", + "x": -278.2200012207031, + "y": 436.0100402832031, + "score": 0 + }, + { + "key": "educational data mining", + "label": "Educational data mining", + "cluster": "7", + "x": -1.9823756217956543, + "y": 250.4990692138672, + "score": 0 + }, + ], + "edges": [ + ["office suite", "human interactome"], + ["educational data mining", "human interactome"], + ], + "clusters": [ + { "key": "0", "color": "#6c3e81", "clusterLabel": "human interactome" }, + { "key": "1", "color": "#666666", "clusterLabel": "Spreadsheets" }, + ], + "tags": [ + { "key": "Chart type", "image": "charttype.svg" }, + { "key": "Company", "image": "company.svg" }, + ] +}` + }) + const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_bad.txt' + const app = await build(t) + console.log('about to hang') + const res = await app.inject({url: '/graphology/read_json?filename=' + rpath}); + console.log('never unhang') + console.log(res); + t.same(JSON.parse(res.payload), {}); + console.log('done'); + }); + /* + test('read_json file good', async (t) => { + const dir = t.testdir({ + 'json_good.txt': `{ + "nodes": [ + { + "key": "customer data management", + "label": "Customer data management", + "tag": "Field", + "URL": "https://en.wikipedia.org/wiki/Customer%20data%20management", + "cluster": "7", + "x": -278.2200012207031, + "y": 436.0100402832031, + "score": 0 + }, + { + "key": "educational data mining", + "label": "Educational data mining", + "tag": "Field", + "URL": "https://en.wikipedia.org/wiki/Educational%20data%20mining", + "cluster": "7", + "x": -1.9823756217956543, + "y": 250.4990692138672, + "score": 0 + }, + ], + "edges": [ + ["office suite", "human interactome"], + ["educational data mining", "human interactome"], + ], + "clusters": [ + { "key": "0", "color": "#6c3e81", "clusterLabel": "human interactome" }, + { "key": "1", "color": "#666666", "clusterLabel": "Spreadsheets" }, + ], + "tags": [ + { "key": "Chart type", "image": "charttype.svg" }, + { "key": "Company", "image": "company.svg" }, + ] + }` + }) + console.log('hang the next test?') + const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_good.txt' + const app = await build(t) + // const res = await app.inject({url: '/graphology/read_json?filename=' + rpath}) + // t.same(JSON.parse(res.payload), {}); + t.equal(true, true); + }); + */ From 6feff02dff4a9c253cbfc78d98130666fa15ebb7 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Wed, 15 Jun 2022 18:13:37 -0500 Subject: [PATCH 43/68] Endless runaround from node tap --- modules/demo/.vscode/launch.json | 40 ++- .../routes/graphology/index.js | 109 ++++----- .../test/routes/example.test.js | 27 --- .../test/routes/graphology.test.js | 227 +++++++++--------- .../test/routes/root.test.js | 1 - .../demo/rapids-api-server/util/gpu_cache.js | 29 +-- 6 files changed, 202 insertions(+), 231 deletions(-) delete mode 100644 modules/demo/rapids-api-server/test/routes/example.test.js diff --git a/modules/demo/.vscode/launch.json b/modules/demo/.vscode/launch.json index 192894747..44e9f24d9 100644 --- a/modules/demo/.vscode/launch.json +++ b/modules/demo/.vscode/launch.json @@ -13,14 +13,27 @@ } ], "configurations": [ + { + "name": "Attach", + "port": 9229, + "request": "attach", + "skipFiles": [ + "/**" + ], + "type": "node" + }, { "type": "node", "request": "launch", "name": "Debug Demo (TS only)", "program": "${workspaceFolder}/${input:DEMO_NAME}", "stopOnEntry": false, - "args": ["${input:DEMO_ARGS}"], - "runtimeArgs": ["--experimental-vm-modules"], + "args": [ + "${input:DEMO_ARGS}" + ], + "runtimeArgs": [ + "--experimental-vm-modules" + ], "cwd": "${workspaceFolder}/${input:DEMO_NAME}", "console": "integratedTerminal", "internalConsoleOptions": "neverOpen", @@ -44,7 +57,9 @@ { "name": "Debug Demo (launch gdb)", // hide the individual configurations from the debug dropdown list - "presentation": { "hidden": true }, + "presentation": { + "hidden": true + }, "type": "cppdbg", "request": "launch", "stopAtEntry": false, @@ -62,9 +77,18 @@ ], "program": "${input:NODE_BINARY}", "environment": [ - { "name": "NODE_DEBUG", "value": "1" }, - { "name": "NODE_NO_WARNINGS", "value": "1" }, - { "name": "NODE_ENV", "value": "production" }, + { + "name": "NODE_DEBUG", + "value": "1" + }, + { + "name": "NODE_NO_WARNINGS", + "value": "1" + }, + { + "name": "NODE_ENV", + "value": "production" + }, // { "name": "READABLE_STREAM", "value": "disable" }, ], "args": [ @@ -80,7 +104,9 @@ "type": "node", "request": "attach", // hide the individual configurations from the debug dropdown list - "presentation": { "hidden": true }, + "presentation": { + "hidden": true + }, "port": 9229, "timeout": 60000, "cwd": "${workspaceFolder}", diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index 2b026a828..58ae8ffac 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -25,46 +25,13 @@ const fastify = require('fastify') const arrowPlugin = require('fastify-arrow'); const gpu_cache = require('../../util/gpu_cache.js'); -const findLocalFile = - async function(query) { - let message = 'Unknown error'; - let path = undefined; - let result = {'params': JSON.stringify(query), success: false, message: message}; - if (query.filename === undefined) { - message = 'Parameter filename is required' - result.message = message; - } else if (query.filename.search('http') != -1) { - message = 'Remote files not supported yet.' - result.message = message; - } else { - message = 'File is not remote'; - // does the file exist? - const path = Path.join(__dirname, query.filename); - console.log('Does the file exist?'); - try { - const stats = await Stat(path); - if (stats == null) { - message = 'File does not exist at ' + path; - console.log(message); - result.message = message; - } else { - // did the file read? - message = 'File is available'; - console.log(message); - } - } catch (e) { - message = 'Exception finding file.'; - result.message = message; - result.error = e; - return result; - }; - } - return {path: path, result: result}; -} - - module.exports = async function(fastify, opts) { +module.exports = async function(fastify, opts) { fastify.register(arrowPlugin); fastify.register(fastifyCors, {origin: 'http://localhost:3002'}); + fastify.decorate('setDataframe', gpu_cache.setDataframe) + fastify.decorate('getDataframe', gpu_cache.getDataframe) + fastify.decorate('readGraphology', gpu_cache.readGraphology) + fastify.decorate('readLargeGraphDemo', gpu_cache.readLargeGraphDemo) fastify.get('/', async function(request, reply) { return { graphology: { @@ -123,13 +90,12 @@ const findLocalFile = handler: async (request, reply) => { // load the file via read_text // is the file local or remote? - const result = findLocalFile(request.query); - const path = file.path; + const path = file.path; try { - const graphology = gpu_cache.readLargeGraphDemo(path); - gpu_cache.setDataframe('nodes', graphology['nodes']); - gpu_cache.setDataframe('edges', graphology['edges']); - gpu_cache.setDataframe('options', graphology['options']); + const graphology = fastify.readLargeGraphDemo(path); + fastify.setDataframe('nodes', graphology['nodes']); + fastify.setDataframe('edges', graphology['edges']); + fastify.setDataframe('options', graphology['options']); result.message = 'Ok'; reply.code(200).send(result); } catch (e) { @@ -154,21 +120,36 @@ const findLocalFile = } }, handler: async (request, reply) => { - const result = findLocalFile(request.query); - const path = result.path; + const query = request.query; + let result = {'params': JSON.stringify(query), success: false, message: 'Finding file.'}; try { - const graphology = gpu_cache.readGraphology(path); - gpu_cache.setDataframe('nodes', graphology['nodes']); - gpu_cache.setDataframe('edges', graphology['edges']); - gpu_cache.setDataframe('clusters', graphology['clusters']); - gpu_cache.setDataframe('tags', graphology['tags']); - reply.code(200).send(result); - } catch (e) { - message = 'Exception reading file.'; - result.message = message; - result.error = e; - reply.code(500).send(result); - }; + let path = undefined; + if (query.filename === undefined) { + result.message = 'Parameter filename is required' + result.code = 400; + } else if (query.filename.search('http') != -1) { + result.message = 'Remote files not supported yet.' + result.code = 406; + } else { + result.message = 'File is not remote'; + // does the file exist? + const path = Path.join(__dirname, query.filename); + console.log('Does the file exist?'); + const stats = await Stat(path); + const message = 'File is available'; + result.message = message; + result.success = true; + console.log(message); + const graphology = fastify.readGraphology(path); + console.log(graphology); + fastify.setDataframe('nodes', graphology['nodes']); + fastify.setDataframe('edges', graphology['edges']); + fastify.setDataframe('clusters', graphology['clusters']); + fastify.setDataframe('tags', graphology['tags']); + result.message = 'File read onto GPU.' + } + } catch (e) { return e; }; + return result; } }); @@ -179,7 +160,7 @@ const findLocalFile = handler: async (request, reply) => { let message = 'Error'; let result = {'params': JSON.stringify(request.params), success: false, message: message}; - const table = gpu_cache.getDataframe(request.params.table); + const table = fastify.getDataframe(request.params.table); if (table == undefined) { result.message = 'Table not found'; reply.code(404).send(result); @@ -197,7 +178,7 @@ const findLocalFile = handler: async (request, reply) => { let message = 'Error'; let result = {'params': JSON.stringify(request.params), success: false, message: message}; - const table = gpu_cache.getDataframe(request.params.table); + const table = fastify.getDataframe(request.params.table); if (table == undefined) { result.message = 'Table not found'; reply.code(404).send(result); @@ -214,7 +195,7 @@ const findLocalFile = handler: async (request, reply) => { let message = 'Error'; let result = {success: false, message: message}; - const df = gpu_cache.getDataframe('nodes'); + const df = fastify.getDataframe('nodes'); if (df == undefined) { result.message = 'Table not found'; reply.code(404).send(result); @@ -238,7 +219,7 @@ const findLocalFile = handler: async (request, reply) => { let message = 'Error'; let result = {success: false, message: message}; - const df = gpu_cache.getDataframe('nodes'); + const df = fastify.getDataframe('nodes'); if (df == undefined) { result.message = 'Table not found'; reply.code(404).send(result); @@ -282,8 +263,8 @@ const findLocalFile = handler: async (request, reply) => { let message = 'Error'; let result = {success: false, message: message}; - const df = gpu_cache.getDataframe('nodes'); - const edges = gpu_cache.getDataframe('edges'); + const df = fastify.getDataframe('nodes'); + const edges = fastify.getDataframe('edges'); if (df == undefined) { result.message = 'Table not found'; reply.code(404).send(result); diff --git a/modules/demo/rapids-api-server/test/routes/example.test.js b/modules/demo/rapids-api-server/test/routes/example.test.js deleted file mode 100644 index 0f2b91efe..000000000 --- a/modules/demo/rapids-api-server/test/routes/example.test.js +++ /dev/null @@ -1,27 +0,0 @@ -'use strict' - -const {test} = require('tap') -const {build} = require('../helper') - -test('root returns API description', async (t) => { - const app = await build(t) - - const res = await app.inject({url: '/'}) - t.same(JSON.parse(res.payload), { - 'graphology': { - 'description': 'The graphology api provides GPU acceleration of graphology datasets.', - 'schema': { - 'read_json': { - 'filename': 'A URI to a graphology json dataset file.', - 'returns': 'Result OK/Not Found/Fail' - }, - 'list_tables': - {'returns': 'An object containing graphology related datasets resident on GPU memory.'}, - ':table': { - ':column': 'The name of the column you want to request.', - 'returns': 'An arrow buffer of the column contents.' - } - } - } - }); -}) diff --git a/modules/demo/rapids-api-server/test/routes/graphology.test.js b/modules/demo/rapids-api-server/test/routes/graphology.test.js index 0668e40ec..d90496407 100644 --- a/modules/demo/rapids-api-server/test/routes/graphology.test.js +++ b/modules/demo/rapids-api-server/test/routes/graphology.test.js @@ -1,14 +1,10 @@ 'use strict' -const {test} = require('tap') -const {build} = require('../helper') -const path = require('path'); -const {StringSeries} = require('@rapidsai/cudf'); -const {stringify} = require('querystring'); - -test('graphology root returns api description', async (t) => { - const app = await build(t) +const {test} = require('tap') +const {build} = require('../helper') +test('graphology root returns api description', async t => { + const app = await build(t); const res = await app.inject({url: '/graphology'}) t.same(JSON.parse(res.payload), { graphology: { @@ -47,117 +43,120 @@ test('graphology root returns api description', async (t) => { {return: 'Returns the existing edges table after applying normalization for sigma.js'} } } - }); + }) }); -test('read_json no filename', async (t) => { - const app = await build(t) - -const res = await app.inject({url: '/graphology/read_json'}) +test('read_json no filename', async t => { + const app = await build(t); + const res = await app.inject({url: '/graphology/read_json'}) t.same( JSON.parse(res.payload), {result: {message: 'Parameter filename is required', params: '{}', success: false, code: 400}}) }); - test('read_json no file', async (t) => { - const app = await build(t) - const res = await app.inject({url: '/graphology/read_json?filename=filenotfound.txt'}); - const payload = JSON.parse(res.payload).result; - t.ok(payload.message.includes('File does not exist')) - t.equal(payload.code, 400) - t.equal(payload.success, false) - }); +test('read_json no file', async (t) => { + const app = await build(t) + const res = await app.inject({url: '/graphology/read_json?filename=filenotfound.txt'}); + const payload = JSON.parse(res.payload).result; + t.ok(payload.message.includes('File does not exist')) + t.equal(payload.code, 400) + t.equal(payload.success, false) +}); + +test('read_json incorrect format', async (t) => { + const dir = t.testdir({ + 'json_bad.txt': ` { + 'nodes': + [ + { + 'key': 'customer data management', + 'label': 'Customer data management', + 'cluster': '7', + 'x': -278.2200012207031, + 'y': 436.0100402832031, + 'score': 0 + }, + { + 'key': 'educational data mining', + 'label': 'Educational data mining', + 'cluster': '7', + 'x': -1.9823756217956543, + 'y': 250.4990692138672, + 'score': 0 + }, + ], + 'edges': + [ + ['office suite', 'human interactome'], + ['educational data mining', 'human interactome'], + ], + 'clusters': + [ + {'key': '0', 'color': '#6c3e81', 'clusterLabel': 'human interactome'}, + {'key': '1', 'color': '#666666', 'clusterLabel': 'Spreadsheets'}, + ], + 'tags': [ + {'key': 'Chart type', 'image': 'charttype.svg'}, + {'key': 'Company', 'image': 'company.svg'}, + ] + } ` + }) + const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_bad.txt' + const app = await build(t); + const res = await app.inject({url: '/graphology/read_json?filename=' + rpath}); + const payload = JSON.parse(res.payload); + t.equal(payload.message, 'File read onto GPU.'); + t.equal(payload.success, true); + // gpu_cache.clearDataframes(); +}); - test('read_json incorrect format', {saveFixture: true}, async (t) => { - const dir = t.testdir({ - 'json_bad.txt': ` -{ - "nodes": [ - { - "key": "customer data management", - "label": "Customer data management", - "cluster": "7", - "x": -278.2200012207031, - "y": 436.0100402832031, - "score": 0 - }, - { - "key": "educational data mining", - "label": "Educational data mining", - "cluster": "7", - "x": -1.9823756217956543, - "y": 250.4990692138672, - "score": 0 - }, - ], - "edges": [ - ["office suite", "human interactome"], - ["educational data mining", "human interactome"], - ], - "clusters": [ - { "key": "0", "color": "#6c3e81", "clusterLabel": "human interactome" }, - { "key": "1", "color": "#666666", "clusterLabel": "Spreadsheets" }, - ], - "tags": [ - { "key": "Chart type", "image": "charttype.svg" }, - { "key": "Company", "image": "company.svg" }, - ] -}` - }) - const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_bad.txt' - const app = await build(t) - console.log('about to hang') - const res = await app.inject({url: '/graphology/read_json?filename=' + rpath}); - console.log('never unhang') - console.log(res); - t.same(JSON.parse(res.payload), {}); - console.log('done'); - }); - /* - test('read_json file good', async (t) => { - const dir = t.testdir({ - 'json_good.txt': `{ - "nodes": [ - { - "key": "customer data management", - "label": "Customer data management", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Customer%20data%20management", - "cluster": "7", - "x": -278.2200012207031, - "y": 436.0100402832031, - "score": 0 - }, - { - "key": "educational data mining", - "label": "Educational data mining", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Educational%20data%20mining", - "cluster": "7", - "x": -1.9823756217956543, - "y": 250.4990692138672, - "score": 0 - }, - ], - "edges": [ - ["office suite", "human interactome"], - ["educational data mining", "human interactome"], - ], - "clusters": [ - { "key": "0", "color": "#6c3e81", "clusterLabel": "human interactome" }, - { "key": "1", "color": "#666666", "clusterLabel": "Spreadsheets" }, - ], - "tags": [ - { "key": "Chart type", "image": "charttype.svg" }, - { "key": "Company", "image": "company.svg" }, - ] - }` - }) - console.log('hang the next test?') - const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_good.txt' - const app = await build(t) - // const res = await app.inject({url: '/graphology/read_json?filename=' + rpath}) - // t.same(JSON.parse(res.payload), {}); - t.equal(true, true); - }); - */ +test('read_json file good', async (t) => { + const dir = t.testdir({ + 'json_good.txt': ` { + 'nodes': + [ + { + 'key': 'customer data management', + 'label': 'Customer data management', + 'tag': 'Field', + 'URL': 'https://en.wikipedia.org/wiki/Customer%20data%20management', + 'cluster': '7', + 'x': -278.2200012207031, + 'y': 436.0100402832031, + 'score': 0 + }, + { + 'key': 'educational data mining', + 'label': 'Educational data mining', + 'tag': 'Field', + 'URL': 'https://en.wikipedia.org/wiki/Educational%20data%20mining', + 'cluster': '7', + 'x': -1.9823756217956543, + 'y': 250.4990692138672, + 'score': 0 + }, + ], + 'edges': + [ + ['office suite', 'human interactome'], + ['educational data mining', 'human interactome'], + ], + 'clusters': + [ + {'key': '0', 'color': '#6c3e81', 'clusterLabel': 'human interactome'}, + {'key': '1', 'color': '#666666', 'clusterLabel': 'Spreadsheets'}, + ], + 'tags': [ + {'key': 'Chart type', 'image': 'charttype.svg'}, + {'key': 'Company', 'image': 'company.svg'}, + ] + } ` + }) + const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_good.txt' + const app = await build(t) + const res = await app.inject({url: '/graphology/read_json?filename=' + rpath}) + const payload = JSON.parse(res.payload); + t.equal(payload.message, 'File read onto GPU.'); + t.equal(payload.success, true); + // gpu_cache.clearDataframes(); +}); diff --git a/modules/demo/rapids-api-server/test/routes/root.test.js b/modules/demo/rapids-api-server/test/routes/root.test.js index 0f2b91efe..524e1030c 100644 --- a/modules/demo/rapids-api-server/test/routes/root.test.js +++ b/modules/demo/rapids-api-server/test/routes/root.test.js @@ -5,7 +5,6 @@ const {build} = require('../helper') test('root returns API description', async (t) => { const app = await build(t) - const res = await app.inject({url: '/'}) t.same(JSON.parse(res.payload), { 'graphology': { diff --git a/modules/demo/rapids-api-server/util/gpu_cache.js b/modules/demo/rapids-api-server/util/gpu_cache.js index a54737a50..945d8652e 100644 --- a/modules/demo/rapids-api-server/util/gpu_cache.js +++ b/modules/demo/rapids-api-server/util/gpu_cache.js @@ -63,25 +63,19 @@ function json_aoa_to_dataframe(str, dtypes) { return result; } -function getGraphologyObjectOrder(json_dataset) { - const graphologyObjects = - ['"nodes:"', '"clusters:"', '"tags:"', '"edges:"', '"attributes:"', '"options:"']; - graphologyObjects.forEach((key, ix) => { - console.log(key); - console.log(ix); - console.log({key: key, ix: ix, pos: json_dataset._col.find(key)}); - }); -} - module.exports = { - setDataframe(name, dataframe) { + async setDataframe(name, dataframe) { if (timeout) { clearTimeout(timeout); } - timeout = setTimeout(clearCachedGPUData, 10 * 60 * 1000); + timeout = setTimeout(clearCachedGPUData, 60 * 10 * 1000); datasets[name] = dataframe; - console.log(datasets); }, - getDataframe(name) { return datasets[name] }, - readLargeGraphDemo(path) { + async getDataframe(name) { return datasets[name] }, + async clearDataframes() { + clearCachedGPUData(); + clearTimeout(timeout); + datasets = null; + }, + async readLargeGraphDemo(path) { console.log('readLargeGraphDemo'); const dataset = StringSeries.readText(path, ''); let split = dataset.split('"options":'); @@ -102,10 +96,9 @@ module.exports = { const options = new DataFrame(optionsArr); return {nodes: nodes, edges: edges, options: options}; }, - readGraphology(path) { + async readGraphology(path) { console.log('readGraphology'); - const dataset = StringSeries.readText(path, ''); - getGraphologyObjectOrder(dataset); + const dataset = StringSeries.readText(path, ''); let split = dataset.split('"tags":'); const ttags = split.gather([1], false); let rest = split.gather([0], false); From ba2e459519cb3b0c0e72e827add41cfe24925961 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Wed, 15 Jun 2022 18:18:30 -0500 Subject: [PATCH 44/68] Endless runaround from node tap --- .../test/routes/graphology.test.js | 14 ++++++-------- 1 file changed, 6 insertions(+), 8 deletions(-) diff --git a/modules/demo/rapids-api-server/test/routes/graphology.test.js b/modules/demo/rapids-api-server/test/routes/graphology.test.js index d90496407..ede8e7daa 100644 --- a/modules/demo/rapids-api-server/test/routes/graphology.test.js +++ b/modules/demo/rapids-api-server/test/routes/graphology.test.js @@ -49,21 +49,19 @@ test('graphology root returns api description', async t => { test('read_json no filename', async t => { const app = await build(t); const res = await app.inject({url: '/graphology/read_json'}) - t.same( - JSON.parse(res.payload), - {result: {message: 'Parameter filename is required', params: '{}', success: false, code: 400}}) + t.same(JSON.parse(res.payload), + {success: false, message: 'Parameter filename is required', params: '{}'}) }); test('read_json no file', async (t) => { const app = await build(t) const res = await app.inject({url: '/graphology/read_json?filename=filenotfound.txt'}); - const payload = JSON.parse(res.payload).result; - t.ok(payload.message.includes('File does not exist')) - t.equal(payload.code, 400) - t.equal(payload.success, false) + const payload = JSON.parse(res.payload) + t.ok(payload.message.includes('no such file or directory')) + t.equal(payload.statusCode, 500) }); -test('read_json incorrect format', async (t) => { +test('read_json incorrect format', {saveFixtures: true}, async (t) => { const dir = t.testdir({ 'json_bad.txt': ` { 'nodes': From 3dd5c68f157a11e13838c5cecb6b0b7affe3148c Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Thu, 16 Jun 2022 11:06:56 -0500 Subject: [PATCH 45/68] Tests almost working. Add some semicolons. --- .../routes/graphology/index.js | 24 +-- .../test/routes/graphology.test.js | 137 +++++++++--------- .../test/routes/root.test.js | 10 +- .../demo/rapids-api-server/util/gpu_cache.js | 2 +- 4 files changed, 88 insertions(+), 85 deletions(-) diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index 58ae8ffac..90d38de11 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -28,10 +28,11 @@ const gpu_cache = require('../../util/gpu_cache.js'); module.exports = async function(fastify, opts) { fastify.register(arrowPlugin); fastify.register(fastifyCors, {origin: 'http://localhost:3002'}); - fastify.decorate('setDataframe', gpu_cache.setDataframe) - fastify.decorate('getDataframe', gpu_cache.getDataframe) - fastify.decorate('readGraphology', gpu_cache.readGraphology) - fastify.decorate('readLargeGraphDemo', gpu_cache.readLargeGraphDemo) + fastify.decorate('setDataframe', gpu_cache.setDataframe); + fastify.decorate('getDataframe', gpu_cache.getDataframe); + fastify.decorate('readGraphology', gpu_cache.readGraphology); + fastify.decorate('readLargeGraphDemo', gpu_cache.readLargeGraphDemo); + fastify.decorate('release', gpu_cache.clearDataframes); fastify.get('/', async function(request, reply) { return { graphology: { @@ -74,11 +75,10 @@ module.exports = async function(fastify, opts) { }); fastify.route({ - method: 'GET', + method: 'POST', url: '/read_large_demo', schema: { querystring: {filename: {type: 'string'}, 'rootkeys': {type: 'array'}}, - response: { 200: { type: 'object', @@ -106,11 +106,10 @@ module.exports = async function(fastify, opts) { }); fastify.route({ - method: 'GET', + method: 'POST', url: '/read_json', schema: { querystring: {filename: {type: 'string'}, 'rootkeys': {type: 'array'}}, - response: { 200: { type: 'object', @@ -125,10 +124,10 @@ module.exports = async function(fastify, opts) { try { let path = undefined; if (query.filename === undefined) { - result.message = 'Parameter filename is required' + result.message = 'Parameter filename is required'; result.code = 400; } else if (query.filename.search('http') != -1) { - result.message = 'Remote files not supported yet.' + result.message = 'Remote files not supported yet.'; result.code = 406; } else { result.message = 'File is not remote'; @@ -146,7 +145,7 @@ module.exports = async function(fastify, opts) { fastify.setDataframe('edges', graphology['edges']); fastify.setDataframe('clusters', graphology['clusters']); fastify.setDataframe('tags', graphology['tags']); - result.message = 'File read onto GPU.' + result.message = 'File read onto GPU.'; } } catch (e) { return e; }; return result; @@ -311,4 +310,7 @@ module.exports = async function(fastify, opts) { } } }); + + fastify.route( + {method: 'POST', url: '/release/', handler: async (request, reply) => { fastify.release(); }}); } diff --git a/modules/demo/rapids-api-server/test/routes/graphology.test.js b/modules/demo/rapids-api-server/test/routes/graphology.test.js index ede8e7daa..29e0453ce 100644 --- a/modules/demo/rapids-api-server/test/routes/graphology.test.js +++ b/modules/demo/rapids-api-server/test/routes/graphology.test.js @@ -48,113 +48,114 @@ test('graphology root returns api description', async t => { test('read_json no filename', async t => { const app = await build(t); - const res = await app.inject({url: '/graphology/read_json'}) + const res = await app.inject({method: 'POST', url: '/graphology/read_json'}); t.same(JSON.parse(res.payload), - {success: false, message: 'Parameter filename is required', params: '{}'}) + {success: false, message: 'Parameter filename is required', params: '{}'}); }); test('read_json no file', async (t) => { - const app = await build(t) - const res = await app.inject({url: '/graphology/read_json?filename=filenotfound.txt'}); - const payload = JSON.parse(res.payload) - t.ok(payload.message.includes('no such file or directory')) - t.equal(payload.statusCode, 500) + const app = await build(t); + const res = + await app.inject({method: 'POST', url: '/graphology/read_json?filename=filenotfound.txt'}); + const payload = JSON.parse(res.payload); + t.ok(payload.message.includes('no such file or directory')); + t.equal(payload.statusCode, 500); }); -test('read_json incorrect format', {saveFixtures: true}, async (t) => { - const dir = t.testdir({ +test('read_json incorrect format', {only: true, saveFixture: true}, async (t) => { + const dir = t.testdir({ 'json_bad.txt': ` { - 'nodes': + "nodes": [ { - 'key': 'customer data management', - 'label': 'Customer data management', - 'cluster': '7', - 'x': -278.2200012207031, - 'y': 436.0100402832031, - 'score': 0 + "key": "customer data management", + "label": "Customer data management", + "cluster": "7", + "x": -278.2200012207031, + "y": 436.0100402832031, + "score": 0 }, { - 'key': 'educational data mining', - 'label': 'Educational data mining', - 'cluster': '7', - 'x': -1.9823756217956543, - 'y': 250.4990692138672, - 'score': 0 + "key": "educational data mining", + "label": "Educational data mining", + "cluster": "7", + "x": -1.9823756217956543, + "y": 250.4990692138672, + "score": 0 }, ], - 'edges': + "edges": [ - ['office suite', 'human interactome'], - ['educational data mining', 'human interactome'], + ["office suite", "human interactome"], + ["educational data mining", "human interactome"], ], - 'clusters': + "clusters": [ - {'key': '0', 'color': '#6c3e81', 'clusterLabel': 'human interactome'}, - {'key': '1', 'color': '#666666', 'clusterLabel': 'Spreadsheets'}, + {"key": "0", "color": "#6c3e81", "clusterLabel": "human interactome"}, + {"key": "1", "color": "#666666", "clusterLabel": "Spreadsheets"}, ], - 'tags': [ - {'key': 'Chart type', 'image': 'charttype.svg'}, - {'key': 'Company', 'image': 'company.svg'}, + "tags": [ + {"key": "Chart type", "image": "charttype.svg"}, + {"key": "Company", "image": "company.svg"}, ] } ` - }) - const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_bad.txt' - const app = await build(t); - const res = await app.inject({url: '/graphology/read_json?filename=' + rpath}); + }); + const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_bad.txt'; + const app = await build(t); + const res = await app.inject({method: 'POST', url: '/graphology/read_json?filename=' + rpath}); + const release = await app.inject({method: 'POST', url: '/release'}); const payload = JSON.parse(res.payload); t.equal(payload.message, 'File read onto GPU.'); t.equal(payload.success, true); - // gpu_cache.clearDataframes(); }); test('read_json file good', async (t) => { - const dir = t.testdir({ + const dir = t.testdir({ 'json_good.txt': ` { - 'nodes': + "nodes": [ { - 'key': 'customer data management', - 'label': 'Customer data management', - 'tag': 'Field', - 'URL': 'https://en.wikipedia.org/wiki/Customer%20data%20management', - 'cluster': '7', - 'x': -278.2200012207031, - 'y': 436.0100402832031, - 'score': 0 + "key": "customer data management", + "label": "Customer data management", + "tag": "Field", + "URL": "https://en.wikipedia.org/wiki/Customer%20data%20management", + "cluster": "7", + "x": -278.2200012207031, + "y": 436.0100402832031, + "score": 0 }, { - 'key': 'educational data mining', - 'label': 'Educational data mining', - 'tag': 'Field', - 'URL': 'https://en.wikipedia.org/wiki/Educational%20data%20mining', - 'cluster': '7', - 'x': -1.9823756217956543, - 'y': 250.4990692138672, - 'score': 0 + "key": "educational data mining", + "label": "Educational data mining", + "tag": "Field", + "URL": "https://en.wikipedia.org/wiki/Educational%20data%20mining", + "cluster": "7", + "x": -1.9823756217956543, + "y": 250.4990692138672, + "score": 0 }, ], - 'edges': + "edges": [ - ['office suite', 'human interactome'], - ['educational data mining', 'human interactome'], + ["office suite", "human interactome"], + ["educational data mining", "human interactome"], ], - 'clusters': + "clusters": [ - {'key': '0', 'color': '#6c3e81', 'clusterLabel': 'human interactome'}, - {'key': '1', 'color': '#666666', 'clusterLabel': 'Spreadsheets'}, + {"key": "0", "color": "#6c3e81", "clusterLabel": "human interactome"}, + {"key": "1", "color": "#666666", "clusterLabel": "Spreadsheets"}, ], - 'tags': [ - {'key': 'Chart type', 'image': 'charttype.svg'}, - {'key': 'Company', 'image': 'company.svg'}, + "tags": [ + {"key": "Chart type", "image": "charttype.svg"}, + {"key": "Company", "image": "company.svg"}, ] } ` - }) - const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_good.txt' - const app = await build(t) - const res = await app.inject({url: '/graphology/read_json?filename=' + rpath}) + }); + const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_good.txt'; + const app = await build(t); + const res = await app.inject({method: 'POST', url: '/graphology/read_json?filename=' + rpath}); + const release = await app.inject({method: 'POST', url: '/release'}); const payload = JSON.parse(res.payload); t.equal(payload.message, 'File read onto GPU.'); t.equal(payload.success, true); - // gpu_cache.clearDataframes(); }); diff --git a/modules/demo/rapids-api-server/test/routes/root.test.js b/modules/demo/rapids-api-server/test/routes/root.test.js index 524e1030c..a7de34e93 100644 --- a/modules/demo/rapids-api-server/test/routes/root.test.js +++ b/modules/demo/rapids-api-server/test/routes/root.test.js @@ -1,11 +1,11 @@ 'use strict' -const {test} = require('tap') -const {build} = require('../helper') +const {test} = require('tap'); +const {build} = require('../helper'); test('root returns API description', async (t) => { - const app = await build(t) - const res = await app.inject({url: '/'}) + const app = await build(t); + const res = await app.inject({url: '/'}); t.same(JSON.parse(res.payload), { 'graphology': { 'description': 'The graphology api provides GPU acceleration of graphology datasets.', @@ -23,4 +23,4 @@ test('root returns API description', async (t) => { } } }); -}) +}); diff --git a/modules/demo/rapids-api-server/util/gpu_cache.js b/modules/demo/rapids-api-server/util/gpu_cache.js index 945d8652e..f4ad85cde 100644 --- a/modules/demo/rapids-api-server/util/gpu_cache.js +++ b/modules/demo/rapids-api-server/util/gpu_cache.js @@ -66,7 +66,7 @@ function json_aoa_to_dataframe(str, dtypes) { module.exports = { async setDataframe(name, dataframe) { if (timeout) { clearTimeout(timeout); } - timeout = setTimeout(clearCachedGPUData, 60 * 10 * 1000); + timeout = setTimeout(clearCachedGPUData, 10 * 60 * 1000); datasets[name] = dataframe; }, async getDataframe(name) { return datasets[name] }, From aa6342de57eefaaa791022de509fc995346cb212 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Thu, 16 Jun 2022 14:49:21 -0500 Subject: [PATCH 46/68] They all work. Hard won. --- modules/demo/.vscode/launch.json | 2 +- .../routes/graphology/index.js | 75 ++++++++++++------- .../test/routes/graphology.test.js | 19 ++--- .../demo/rapids-api-server/util/gpu_cache.js | 52 ++++++++----- 4 files changed, 91 insertions(+), 57 deletions(-) diff --git a/modules/demo/.vscode/launch.json b/modules/demo/.vscode/launch.json index 44e9f24d9..4c8382b18 100644 --- a/modules/demo/.vscode/launch.json +++ b/modules/demo/.vscode/launch.json @@ -14,7 +14,7 @@ ], "configurations": [ { - "name": "Attach", + "name": "Attach Test", "port": 9229, "request": "attach", "skipFiles": [ diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index 90d38de11..ed7f6162c 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -32,7 +32,7 @@ module.exports = async function(fastify, opts) { fastify.decorate('getDataframe', gpu_cache.getDataframe); fastify.decorate('readGraphology', gpu_cache.readGraphology); fastify.decorate('readLargeGraphDemo', gpu_cache.readLargeGraphDemo); - fastify.decorate('release', gpu_cache.clearDataframes); + fastify.decorate('clearDataFrames', gpu_cache.clearDataframes); fastify.get('/', async function(request, reply) { return { graphology: { @@ -92,10 +92,10 @@ module.exports = async function(fastify, opts) { // is the file local or remote? const path = file.path; try { - const graphology = fastify.readLargeGraphDemo(path); - fastify.setDataframe('nodes', graphology['nodes']); - fastify.setDataframe('edges', graphology['edges']); - fastify.setDataframe('options', graphology['options']); + const graphology = await fastify.readLargeGraphDemo(path); + await fastify.setDataframe('nodes', graphology['nodes']); + await fastify.setDataframe('edges', graphology['edges']); + await fastify.setDataframe('options', graphology['options']); result.message = 'Ok'; reply.code(200).send(result); } catch (e) { @@ -120,15 +120,20 @@ module.exports = async function(fastify, opts) { }, handler: async (request, reply) => { const query = request.query; - let result = {'params': JSON.stringify(query), success: false, message: 'Finding file.'}; + let result = { + 'params': JSON.stringify(query), + success: false, + message: 'Finding file.', + statusCode: 200 + }; try { let path = undefined; if (query.filename === undefined) { - result.message = 'Parameter filename is required'; - result.code = 400; + result.message = 'Parameter filename is required'; + result.statusCode = 400; } else if (query.filename.search('http') != -1) { - result.message = 'Remote files not supported yet.'; - result.code = 406; + result.message = 'Remote files not supported yet.'; + result.statusCode = 406; } else { result.message = 'File is not remote'; // does the file exist? @@ -138,17 +143,25 @@ module.exports = async function(fastify, opts) { const message = 'File is available'; result.message = message; result.success = true; - console.log(message); - const graphology = fastify.readGraphology(path); - console.log(graphology); - fastify.setDataframe('nodes', graphology['nodes']); - fastify.setDataframe('edges', graphology['edges']); - fastify.setDataframe('clusters', graphology['clusters']); - fastify.setDataframe('tags', graphology['tags']); - result.message = 'File read onto GPU.'; + try { + const graphology = await fastify.readGraphology(path); + await fastify.setDataframe('nodes', graphology['nodes']); + await fastify.setDataframe('edges', graphology['edges']); + await fastify.setDataframe('clusters', graphology['clusters']); + await fastify.setDataframe('tags', graphology['tags']); + result.message = 'File read onto GPU.'; + } catch (e) { + result.success = false; + result.message = e; + result.statusCode = 500; + } } - } catch (e) { return e; }; - return result; + } catch (e) { + result.success = false; + result.message = e.message; + result.statusCode = 404; + }; + await reply.code(result.statusCode).send(result); } }); @@ -159,7 +172,7 @@ module.exports = async function(fastify, opts) { handler: async (request, reply) => { let message = 'Error'; let result = {'params': JSON.stringify(request.params), success: false, message: message}; - const table = fastify.getDataframe(request.params.table); + const table = await fastify.getDataframe(request.params.table); if (table == undefined) { result.message = 'Table not found'; reply.code(404).send(result); @@ -177,7 +190,7 @@ module.exports = async function(fastify, opts) { handler: async (request, reply) => { let message = 'Error'; let result = {'params': JSON.stringify(request.params), success: false, message: message}; - const table = fastify.getDataframe(request.params.table); + const table = await fastify.getDataframe(request.params.table); if (table == undefined) { result.message = 'Table not found'; reply.code(404).send(result); @@ -194,7 +207,7 @@ module.exports = async function(fastify, opts) { handler: async (request, reply) => { let message = 'Error'; let result = {success: false, message: message}; - const df = fastify.getDataframe('nodes'); + const df = await fastify.getDataframe('nodes'); if (df == undefined) { result.message = 'Table not found'; reply.code(404).send(result); @@ -218,7 +231,7 @@ module.exports = async function(fastify, opts) { handler: async (request, reply) => { let message = 'Error'; let result = {success: false, message: message}; - const df = fastify.getDataframe('nodes'); + const df = await fastify.getDataframe('nodes'); if (df == undefined) { result.message = 'Table not found'; reply.code(404).send(result); @@ -262,8 +275,8 @@ module.exports = async function(fastify, opts) { handler: async (request, reply) => { let message = 'Error'; let result = {success: false, message: message}; - const df = fastify.getDataframe('nodes'); - const edges = fastify.getDataframe('edges'); + const df = await fastify.getDataframe('nodes'); + const edges = await fastify.getDataframe('edges'); if (df == undefined) { result.message = 'Table not found'; reply.code(404).send(result); @@ -311,6 +324,12 @@ module.exports = async function(fastify, opts) { } }); - fastify.route( - {method: 'POST', url: '/release/', handler: async (request, reply) => { fastify.release(); }}); + fastify.route({ + method: 'POST', + url: '/release', + handler: async (request, reply) => { + await fastify.clearDataFrames(); + reply.code(200).send({message: 'OK'}) + } + }); } diff --git a/modules/demo/rapids-api-server/test/routes/graphology.test.js b/modules/demo/rapids-api-server/test/routes/graphology.test.js index 29e0453ce..a4d37f66b 100644 --- a/modules/demo/rapids-api-server/test/routes/graphology.test.js +++ b/modules/demo/rapids-api-server/test/routes/graphology.test.js @@ -49,8 +49,9 @@ test('graphology root returns api description', async t => { test('read_json no filename', async t => { const app = await build(t); const res = await app.inject({method: 'POST', url: '/graphology/read_json'}); - t.same(JSON.parse(res.payload), - {success: false, message: 'Parameter filename is required', params: '{}'}); + t.same( + JSON.parse(res.payload), + {success: false, message: 'Parameter filename is required', params: '{}', statusCode: 400}); }); test('read_json no file', async (t) => { @@ -59,13 +60,12 @@ test('read_json no file', async (t) => { await app.inject({method: 'POST', url: '/graphology/read_json?filename=filenotfound.txt'}); const payload = JSON.parse(res.payload); t.ok(payload.message.includes('no such file or directory')); - t.equal(payload.statusCode, 500); + t.equal(payload.statusCode, 404); }); -test('read_json incorrect format', {only: true, saveFixture: true}, async (t) => { +test('read_json incorrect format', async (t) => { const dir = t.testdir({ 'json_bad.txt': ` { - "nodes": [ { "key": "customer data management", @@ -103,10 +103,10 @@ test('read_json incorrect format', {only: true, saveFixture: true}, async (t) => const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_bad.txt'; const app = await build(t); const res = await app.inject({method: 'POST', url: '/graphology/read_json?filename=' + rpath}); - const release = await app.inject({method: 'POST', url: '/release'}); + const release = await app.inject({method: 'POST', url: '/graphology/release'}); const payload = JSON.parse(res.payload); - t.equal(payload.message, 'File read onto GPU.'); - t.equal(payload.success, true); + t.equal(payload.message, 'Bad graphology format: nodes not found.'); + t.equal(payload.success, false); }); test('read_json file good', async (t) => { @@ -154,8 +154,9 @@ test('read_json file good', async (t) => { const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_good.txt'; const app = await build(t); const res = await app.inject({method: 'POST', url: '/graphology/read_json?filename=' + rpath}); - const release = await app.inject({method: 'POST', url: '/release'}); + const release = await app.inject({method: 'POST', url: '/graphology/release'}); const payload = JSON.parse(res.payload); + console.log(payload); t.equal(payload.message, 'File read onto GPU.'); t.equal(payload.success, true); }); diff --git a/modules/demo/rapids-api-server/util/gpu_cache.js b/modules/demo/rapids-api-server/util/gpu_cache.js index f4ad85cde..8a567660f 100644 --- a/modules/demo/rapids-api-server/util/gpu_cache.js +++ b/modules/demo/rapids-api-server/util/gpu_cache.js @@ -66,28 +66,37 @@ function json_aoa_to_dataframe(str, dtypes) { module.exports = { async setDataframe(name, dataframe) { if (timeout) { clearTimeout(timeout); } - timeout = setTimeout(clearCachedGPUData, 10 * 60 * 1000); + timeout = setTimeout(clearCachedGPUData, 10 * 60 * 1000); + if (datasets === null) { + datasets = {}; + } datasets[name] = dataframe; }, + async getDataframe(name) { return datasets[name] }, + async clearDataframes() { clearCachedGPUData(); clearTimeout(timeout); datasets = null; }, + async readLargeGraphDemo(path) { console.log('readLargeGraphDemo'); - const dataset = StringSeries.readText(path, ''); - let split = dataset.split('"options":'); + const dataset = StringSeries.readText(path, ''); + let split = dataset.split('"options":'); + if (split.length <= 1) { throw 'Bad readLargeGraphDemo format: tags not found.'; } const toptions = split.gather([1], false); let rest = split.gather([0], false); split = rest.split('"edges":'); - const tedges = split.gather([1], false); - rest = split.gather([0], false); - split = rest.split('"nodes":'); - const tnodes = split.gather([1], false); - const nodes = json_key_attributes_to_dataframe(tnodes); - const edges = json_aos_to_dataframe( + if (split.length <= 1) { throw 'Bad readLargeGraphDemo format: tags not found.'; } + const tedges = split.gather([1], false); + rest = split.gather([0], false); + split = rest.split('"nodes":'); + if (split.length <= 1) { throw 'Bad readLargeGraphDemo format: tags not found.'; } + const tnodes = split.gather([1], false); + const nodes = json_key_attributes_to_dataframe(tnodes); + const edges = json_aos_to_dataframe( tedges, ['key', 'source', 'target'], [new Utf8String, new Int32, new Int32]); let optionsArr = {}; optionsArr['type'] = Series.new(toptions._col.getJSONObject('.type')); @@ -96,21 +105,26 @@ module.exports = { const options = new DataFrame(optionsArr); return {nodes: nodes, edges: edges, options: options}; }, + async readGraphology(path) { console.log('readGraphology'); - const dataset = StringSeries.readText(path, ''); - let split = dataset.split('"tags":'); - const ttags = split.gather([1], false); - let rest = split.gather([0], false); - split = rest.split('"clusters":'); + const dataset = StringSeries.readText(path, ''); + let split = dataset.split('"tags":'); + if (split.length <= 1) { throw 'Bad graphology format: tags not found.'; } + const ttags = split.gather([1], false); + let rest = split.gather([0], false); + split = rest.split('"clusters":'); + if (split.length <= 1) { throw 'Bad graphology format: clusters not found.'; } const tclusters = split.gather([1], false); rest = split.gather([0], false); split = rest.split('"edges":'); - const tedges = split.gather([1], false); - rest = split.gather([0], false); - split = rest.split('"nodes":'); - const tnodes = split.gather([1], false); - const tags = json_aos_to_dataframe(ttags, ['key', 'image'], [new Utf8String, new Utf8String]); + if (split.length <= 1) { throw 'Bad graphology format: edges not found.'; } + const tedges = split.gather([1], false); + rest = split.gather([0], false); + split = rest.split('"nodes":'); + if (split.length <= 1) { throw 'Bad graphology format: nodes not found.'; } + const tnodes = split.gather([1], false); + const tags = json_aos_to_dataframe(ttags, ['key', 'image'], [new Utf8String, new Utf8String]); const clusters = json_aos_to_dataframe( tclusters, ['key', 'color', 'clusterLabel'], [new Int32, new Utf8String, new Utf8String]); const nodes = From 535af17155286efb7e2de3f3d9e3dd6b64cf1952 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Thu, 16 Jun 2022 15:53:52 -0500 Subject: [PATCH 47/68] Create and pass another test. --- .../routes/graphology/index.js | 12 ++ .../test/routes/graphology.test.js | 138 ++++++++++++------ .../demo/rapids-api-server/util/gpu_cache.js | 4 +- 3 files changed, 111 insertions(+), 43 deletions(-) diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index ed7f6162c..f53e07170 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -30,6 +30,7 @@ module.exports = async function(fastify, opts) { fastify.register(fastifyCors, {origin: 'http://localhost:3002'}); fastify.decorate('setDataframe', gpu_cache.setDataframe); fastify.decorate('getDataframe', gpu_cache.getDataframe); + fastify.decorate('listDataframes', gpu_cache.listDataframes); fastify.decorate('readGraphology', gpu_cache.readGraphology); fastify.decorate('readLargeGraphDemo', gpu_cache.readLargeGraphDemo); fastify.decorate('clearDataFrames', gpu_cache.clearDataframes); @@ -165,6 +166,17 @@ module.exports = async function(fastify, opts) { } }); + fastify.route({ + method: 'GET', + url: '/list_tables', + handler: async (request, reply) => { + let message = 'Error'; + let result = {success: false, message: message}; + const list = await fastify.listDataframes(); + return list; + } + }); + fastify.route({ method: 'GET', url: '/get_column/:table/:column', diff --git a/modules/demo/rapids-api-server/test/routes/graphology.test.js b/modules/demo/rapids-api-server/test/routes/graphology.test.js index a4d37f66b..38d0b630b 100644 --- a/modules/demo/rapids-api-server/test/routes/graphology.test.js +++ b/modules/demo/rapids-api-server/test/routes/graphology.test.js @@ -1,8 +1,52 @@ 'use strict' +const {dir} = require('console'); const {test} = require('tap') const {build} = require('../helper') +const json_good = { + 'json_good.txt': + ` { + "nodes": + [ + { + "key": "customer data management", + "label": "Customer data management", + "tag": "Field", + "URL": "https://en.wikipedia.org/wiki/Customer%20data%20management", + "cluster": "7", + "x": -278.2200012207031, + "y": 436.0100402832031, + "score": 0 + }, + { + "key": "educational data mining", + "label": "Educational data mining", + "tag": "Field", + "URL": "https://en.wikipedia.org/wiki/Educational%20data%20mining", + "cluster": "7", + "x": -1.9823756217956543, + "y": 250.4990692138672, + "score": 0 + }, + ], + "edges": + [ + ["office suite", "human interactome"], + ["educational data mining", "human interactome"], + ], + "clusters": + [ + {"key": "0", "color": "#6c3e81", "clusterLabel": "human interactome"}, + {"key": "1", "color": "#666666", "clusterLabel": "Spreadsheets"}, + ], + "tags": [ + {"key": "Chart type", "image": "charttype.svg"}, + {"key": "Company", "image": "company.svg"}, + ] + } ` +}; + test('graphology root returns api description', async t => { const app = await build(t); const res = await app.inject({url: '/graphology'}) @@ -110,53 +154,63 @@ test('read_json incorrect format', async (t) => { }); test('read_json file good', async (t) => { - const dir = t.testdir({ - 'json_good.txt': ` { - "nodes": - [ - { - "key": "customer data management", - "label": "Customer data management", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Customer%20data%20management", - "cluster": "7", - "x": -278.2200012207031, - "y": 436.0100402832031, - "score": 0 - }, - { - "key": "educational data mining", - "label": "Educational data mining", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Educational%20data%20mining", - "cluster": "7", - "x": -1.9823756217956543, - "y": 250.4990692138672, - "score": 0 - }, - ], - "edges": - [ - ["office suite", "human interactome"], - ["educational data mining", "human interactome"], - ], - "clusters": - [ - {"key": "0", "color": "#6c3e81", "clusterLabel": "human interactome"}, - {"key": "1", "color": "#666666", "clusterLabel": "Spreadsheets"}, - ], - "tags": [ - {"key": "Chart type", "image": "charttype.svg"}, - {"key": "Company", "image": "company.svg"}, - ] - } ` - }); + const dir = t.testdir(json_good); const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_good.txt'; const app = await build(t); const res = await app.inject({method: 'POST', url: '/graphology/read_json?filename=' + rpath}); const release = await app.inject({method: 'POST', url: '/graphology/release'}); const payload = JSON.parse(res.payload); - console.log(payload); t.equal(payload.message, 'File read onto GPU.'); t.equal(payload.success, true); }); + +test('list_tables', async (t) => { + const dir = t.testdir(json_good); + const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_good.txt'; + const app = await build(t); + const load = await app.inject({method: 'POST', url: '/graphology/read_json?filename=' + rpath}); + const res = await app.inject({method: 'GET', url: '/graphology/list_tables'}); + const release = await app.inject({method: 'POST', url: '/graphology/release'}); + const payload = JSON.parse(res.payload); + t.ok(payload.includes('nodes')); +}); + +test('get_table', async (t) => { + const app = await build(t); + const res = await app.inject({method: 'GET', url: '/graphology/get_table/nodes'}); + const payload = JSON.parse(res.payload); + t.ok(payload.message.includes('no such file or directory')); + t.equal(payload.statusCode, 404); +}); + +test('get_column', async (t) => { + const app = await build(t); + const res = await app.inject({method: 'GET', url: '/graphology/get_column/nodes/x'}); + const payload = JSON.parse(res.payload); + t.ok(payload.message.includes('no such file or directory')); + t.equal(payload.statusCode, 404); +}); + +test('nodes', async (t) => { + const app = await build(t); + const res = await app.inject({method: 'GET', url: '/graphology/nodes'}); + const payload = JSON.parse(res.payload); + t.ok(payload.message.includes('no such file or directory')); + t.equal(payload.statusCode, 404); +}); + +test('nodes/bounds', async (t) => { + const app = await build(t); + const res = await app.inject({method: 'GET', url: '/graphology/nodes/bounds'}); + const payload = JSON.parse(res.payload); + t.ok(payload.message.includes('no such file or directory')); + t.equal(payload.statusCode, 404); +}); + +test('edges', async (t) => { + const app = await build(t); + const res = await app.inject({method: 'GET', url: '/graphology/edges'}); + const payload = JSON.parse(res.payload); + t.ok(payload.message.includes('no such file or directory')); + t.equal(payload.statusCode, 404); +}); diff --git a/modules/demo/rapids-api-server/util/gpu_cache.js b/modules/demo/rapids-api-server/util/gpu_cache.js index 8a567660f..d7198a5df 100644 --- a/modules/demo/rapids-api-server/util/gpu_cache.js +++ b/modules/demo/rapids-api-server/util/gpu_cache.js @@ -73,7 +73,9 @@ module.exports = { datasets[name] = dataframe; }, - async getDataframe(name) { return datasets[name] }, + async getDataframe(name) { return datasets[name]; }, + + async listDataframes() { return datasets != null ? Object.keys(datasets) : []; }, async clearDataframes() { clearCachedGPUData(); From 22d0fd7a97ecdc43b6b9ca19faf3b63bef7090c7 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 17 Jun 2022 13:27:55 -0500 Subject: [PATCH 48/68] Add proper file loading for large_graph_demo --- .../routes/graphology/index.js | 52 ++++++++++++++----- 1 file changed, 40 insertions(+), 12 deletions(-) diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index f53e07170..4b0fc501b 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -89,20 +89,48 @@ module.exports = async function(fastify, opts) { } }, handler: async (request, reply) => { - // load the file via read_text - // is the file local or remote? - const path = file.path; + const query = request.query; + let result = { + 'params': JSON.stringify(query), + success: false, + message: 'Finding file.', + statusCode: 200 + }; try { - const graphology = await fastify.readLargeGraphDemo(path); - await fastify.setDataframe('nodes', graphology['nodes']); - await fastify.setDataframe('edges', graphology['edges']); - await fastify.setDataframe('options', graphology['options']); - result.message = 'Ok'; - reply.code(200).send(result); + let path = undefined; + if (query.filename === undefined) { + result.message = 'Parameter filename is required'; + result.statusCode = 400; + } else if (query.filename.search('http') != -1) { + result.message = 'Remote files not supported yet.'; + result.statusCode = 406; + } else { + result.message = 'File is not remote'; + // does the file exist? + const path = Path.join(__dirname, query.filename); + console.log('Does the file exist?'); + const stats = await Stat(path); + const message = 'File is available'; + result.message = message; + result.success = true; + try { + const graphology = await fastify.readLargeGraphDemo(path); + await fastify.setDataframe('nodes', graphology['nodes']); + await fastify.setDataframe('edges', graphology['edges']); + await fastify.setDataframe('options', graphology['options']); + result.message = 'File read onto GPU.'; + } catch (e) { + result.success = false; + result.message = e; + result.statusCode = 500; + } + } } catch (e) { - result.message = 'Exception loading dataset onto gpu.'; - reply.code(500).send(result); - } + result.success = false; + result.message = e.message; + result.statusCode = 404; + }; + await reply.code(result.statusCode).send(result); } }); From 0076285f8ded89332147d99c52feac026a1cd375 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 17 Jun 2022 13:29:56 -0500 Subject: [PATCH 49/68] Adding arrow based GET tests. --- modules/demo/rapids-api-server/package.json | 4 +- .../test/routes/graphology.test.js | 72 +++++++++++++++++-- yarn.lock | 58 +++++++++++++++ 3 files changed, 126 insertions(+), 8 deletions(-) diff --git a/modules/demo/rapids-api-server/package.json b/modules/demo/rapids-api-server/package.json index 86fe946cf..3a1274928 100644 --- a/modules/demo/rapids-api-server/package.json +++ b/modules/demo/rapids-api-server/package.json @@ -27,6 +27,8 @@ }, "devDependencies": { "path": "0.12.7", - "tap": "^16.1.0" + "tap": "^16.1.0", + "randomatic": "*", + "node-fetch": "*" } } diff --git a/modules/demo/rapids-api-server/test/routes/graphology.test.js b/modules/demo/rapids-api-server/test/routes/graphology.test.js index 38d0b630b..cc8717e8f 100644 --- a/modules/demo/rapids-api-server/test/routes/graphology.test.js +++ b/modules/demo/rapids-api-server/test/routes/graphology.test.js @@ -1,8 +1,45 @@ 'use strict' -const {dir} = require('console'); -const {test} = require('tap') -const {build} = require('../helper') +const {dir} = require('console'); +const {test} = require('tap'); +const {build} = require('../helper'); +const {tableFromIPC, RecordBatchStreamWriter} = require('apache-arrow'); + +const json_large = { + 'json_large.txt': + ` { + "attributes": {}, + "nodes": [ + { + "key": "290", + "attributes": { + "cluster": 0, + "x": -13.364310772761677, + "y": 4.134339113107921, + "size": 0, + "label": "Node n°291, in cluster n°0", + "color": "#e24b04" + } + }, + { + "key": "291", + "attributes": { + "cluster": 1, + "x": 1.3836898237261988, + "y": -11.536596764896206, + "size": 0, + "label": "Node n°292, in cluster n°1", + "color": "#323455" + } + } + ], + "edges": [ + {"key": "geid_115_98", "source": "128", "target": "193"}, + {"key": "geid_115_99", "source": "269", "target": "93"} + ], + "options": {"type": "mixed", "multi": false, "allowSelfLoops": true} + }` +}; const json_good = { 'json_good.txt': @@ -175,14 +212,35 @@ test('list_tables', async (t) => { t.ok(payload.includes('nodes')); }); -test('get_table', async (t) => { - const app = await build(t); - const res = await app.inject({method: 'GET', url: '/graphology/get_table/nodes'}); - const payload = JSON.parse(res.payload); +test('nodes', async (t) => { + const dir = t.testdir(json_large); + const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_large.txt'; + const app = await build(t); + const load = + await app.inject({method: 'POST', url: '/graphology/read_large_demo?filename=' + rpath}); + const res = await app.inject( + {method: 'GET', url: '/graphology/nodes/', headers: {'accepts': 'application/octet-stream'}}); + const table = tableFromIPC(res.rawPayload); + console.log(table); t.ok(payload.message.includes('no such file or directory')); t.equal(payload.statusCode, 404); }); +test('get_table', async (t) => { + const dir = t.testdir(json_good); + const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_good.txt'; + const app = await build(t); + const load = await app.inject({method: 'POST', url: '/graphology/read_json?filename=' + rpath}); + const res = await app.inject({ + method: 'GET', + url: '/graphology/get_table/nodes', + }); + const table = await tableFromIPC(RecordBatchStreamWriter.writeAll(res.body).toNodeStream()); + const release = await app.inject({method: 'POST', url: '/graphology/release'}); + console.log(res); + t.ok(payload.includes('nodes')); +}); + test('get_column', async (t) => { const app = await build(t); const res = await app.inject({method: 'GET', url: '/graphology/get_column/nodes/x'}); diff --git a/yarn.lock b/yarn.lock index e96163846..c1ac4aa9f 100644 --- a/yarn.lock +++ b/yarn.lock @@ -6096,6 +6096,11 @@ data-uri-to-buffer@3.0.1: resolved "https://registry.npmjs.org/data-uri-to-buffer/-/data-uri-to-buffer-3.0.1.tgz#594b8973938c5bc2c33046535785341abc4f3636" integrity sha512-WboRycPNsVw3B3TL559F7kuBUM4d8CgMEvk6xEJlOp7OBPjt6G7z8WMWlD2rOFZLk6OYfFIUGsCOWzcQH9K2og== +data-uri-to-buffer@^4.0.0: + version "4.0.0" + resolved "https://registry.npmjs.org/data-uri-to-buffer/-/data-uri-to-buffer-4.0.0.tgz#b5db46aea50f6176428ac05b73be39a57701a64b" + integrity sha512-Vr3mLBA8qWmcuschSLAOogKgQ/Jwxulv3RNE4FXnYWRGujzrRWQI4m12fQqRkwX06C0KanhLr4hK+GydchZsaA== + data-urls@^2.0.0: version "2.0.0" resolved "https://registry.npmjs.org/data-urls/-/data-urls-2.0.0.tgz#156485a72963a970f5d5821aaf642bef2bf2db9b" @@ -7278,6 +7283,14 @@ fb-watchman@^2.0.0: dependencies: bser "2.1.1" +fetch-blob@^3.1.2, fetch-blob@^3.1.4: + version "3.1.5" + resolved "https://registry.npmjs.org/fetch-blob/-/fetch-blob-3.1.5.tgz#0077bf5f3fcdbd9d75a0b5362f77dbb743489863" + integrity sha512-N64ZpKqoLejlrwkIAnb9iLSA3Vx/kjgzpcDhygcqJ2KKjky8nCgUQ+dzXtbrLaWZGZNmNfQTsiQ0weZ1svglHg== + dependencies: + node-domexception "^1.0.0" + web-streams-polyfill "^3.0.3" + fetch-readablestream@0.2.0: version "0.2.0" resolved "https://registry.npmjs.org/fetch-readablestream/-/fetch-readablestream-0.2.0.tgz#eaa6d1a76b12de2d4731a343393c6ccdcfe2c795" @@ -7521,6 +7534,13 @@ form-data@~2.3.2: combined-stream "^1.0.6" mime-types "^2.1.12" +formdata-polyfill@^4.0.10: + version "4.0.10" + resolved "https://registry.npmjs.org/formdata-polyfill/-/formdata-polyfill-4.0.10.tgz#24807c31c9d402e002ab3d8c720144ceb8848423" + integrity sha512-buewHzMvYL29jdeQTVILecSaZKnt/RJWjoZCF5OW60Z67/GmSLBkOFM7qh1PI3zFNtJbaZL5eQu1vLfazOwj4g== + dependencies: + fetch-blob "^3.1.2" + forwarded@0.2.0, forwarded@^0.2.0: version "0.2.0" resolved "https://registry.npmjs.org/forwarded/-/forwarded-0.2.0.tgz#2269936428aad4c15c7ebe9779a84bf0b2a81811" @@ -8868,6 +8888,11 @@ is-number@^3.0.0: dependencies: kind-of "^3.0.2" +is-number@^4.0.0: + version "4.0.0" + resolved "https://registry.npmjs.org/is-number/-/is-number-4.0.0.tgz#0026e37f5454d73e356dfe6564699867c6a7f0ff" + integrity sha512-rSklcAIlf1OmFdyAqbnWTLVelsQ58uvZ66S/ZyawjWqIviTWCjg2PzVGw8WUA+nNuPTqb4wgA+NszrJ+08LlgQ== + is-number@^7.0.0: version "7.0.0" resolved "https://registry.npmjs.org/is-number/-/is-number-7.0.0.tgz#7535345b896734d5f80c4d06c50955527a14f12b" @@ -10311,6 +10336,11 @@ material-ui-confirm@2.1.3: resolved "https://registry.npmjs.org/material-ui-confirm/-/material-ui-confirm-2.1.3.tgz#5f75c56d137603f7fcef22125fa82a8892e4dc5f" integrity sha512-3tu1wk5mo7l03QVzo5qiUv8tL28uoVhwUdu/wpIfMsYVAQmak3eFHMWXq/26ZAyqQKJWIqcF3c43hP5+Q7Wi7w== +math-random@^1.0.1: + version "1.0.4" + resolved "https://registry.npmjs.org/math-random/-/math-random-1.0.4.tgz#5dd6943c938548267016d4e34f057583080c514c" + integrity sha512-rUxjysqif/BZQH2yhd5Aaq7vXMSx9NdEsQcyA07uEzIvxgI7zIr33gGsh+RU0/XjmQpCW7RsVof1vlkvQVCK5A== + math.gl@3.5.7, math.gl@^3.5.4, math.gl@^3.5.6: version "3.5.7" resolved "https://registry.npmjs.org/math.gl/-/math.gl-3.5.7.tgz#533c7dd30baf419015493a5d70f23b2df838f86f" @@ -10822,6 +10852,11 @@ node-addon-api@^3.1.0: resolved "https://registry.npmjs.org/node-addon-api/-/node-addon-api-3.2.1.tgz#81325e0a2117789c0128dab65e7e38f07ceba161" integrity sha512-mmcei9JghVNDYydghQmeDX8KoAm0FAiYyIcUt/N4nhyAipB17pllZQDOJD2fotxABnt4Mdz+dKTO7eftLg4d0A== +node-domexception@^1.0.0: + version "1.0.0" + resolved "https://registry.npmjs.org/node-domexception/-/node-domexception-1.0.0.tgz#6888db46a1f71c0b76b3f7555016b63fe64766e5" + integrity sha512-/jKZoMpw0F8GRwl4/eLROPA3cfcXtLApP0QzLmUT/HuPCZWyB7IY9ZrMeKw2O/nFIqPQB3PVM9aYm0F312AXDQ== + node-fetch-npm@^2.0.2: version "2.0.4" resolved "https://registry.npmjs.org/node-fetch-npm/-/node-fetch-npm-2.0.4.tgz#6507d0e17a9ec0be3bec516958a497cec54bf5a4" @@ -10831,6 +10866,15 @@ node-fetch-npm@^2.0.2: json-parse-better-errors "^1.0.0" safe-buffer "^5.1.1" +node-fetch@*: + version "3.2.6" + resolved "https://registry.npmjs.org/node-fetch/-/node-fetch-3.2.6.tgz#6d4627181697a9d9674aae0d61548e0d629b31b9" + integrity sha512-LAy/HZnLADOVkVPubaxHDft29booGglPFDr2Hw0J1AercRh01UiVFm++KMDnJeH9sHgNB4hsXPii7Sgym/sTbw== + dependencies: + data-uri-to-buffer "^4.0.0" + fetch-blob "^3.1.4" + formdata-polyfill "^4.0.10" + node-fetch@2.6.1: version "2.6.1" resolved "https://registry.npmjs.org/node-fetch/-/node-fetch-2.6.1.tgz#045bd323631f76ed2e2b55573394416b639a0052" @@ -12140,6 +12184,15 @@ ramda@0.25.0: resolved "https://registry.npmjs.org/ramda/-/ramda-0.25.0.tgz#8fdf68231cffa90bc2f9460390a0cb74a29b29a9" integrity sha512-GXpfrYVPwx3K7RQ6aYT8KPS8XViSXUVJT1ONhoKPE9VAleW42YE+U+8VEyGWt41EnEQW7gwecYJriTI0pKoecQ== +randomatic@*: + version "3.1.1" + resolved "https://registry.npmjs.org/randomatic/-/randomatic-3.1.1.tgz#b776efc59375984e36c537b2f51a1f0aff0da1ed" + integrity sha512-TuDE5KxZ0J461RVjrJZCJc+J+zCkTb1MbH9AQUq68sMhOMcy9jLcb3BrZKgp9q9Ncltdg4QVqWrH02W2EFFVYw== + dependencies: + is-number "^4.0.0" + kind-of "^6.0.0" + math-random "^1.0.1" + randombytes@^2.0.0, randombytes@^2.0.1, randombytes@^2.0.5, randombytes@^2.1.0: version "2.1.0" resolved "https://registry.npmjs.org/randombytes/-/randombytes-2.1.0.tgz#df6f84372f0270dc65cdf6291349ab7a473d4f2a" @@ -15034,6 +15087,11 @@ web-streams-polyfill@2.1.1: resolved "https://registry.npmjs.org/web-streams-polyfill/-/web-streams-polyfill-2.1.1.tgz#2c82b6193849ccb9efaa267772c28260ef68d6d2" integrity sha512-dlNpL2aab3g8CKfGz6rl8FNmGaRWLLn2g/DtSc9IjB30mEdE6XxzPfPSig5BwGSzI+oLxHyETrQGKjrVVhbLCg== +web-streams-polyfill@^3.0.3: + version "3.2.1" + resolved "https://registry.npmjs.org/web-streams-polyfill/-/web-streams-polyfill-3.2.1.tgz#71c2718c52b45fd49dbeee88634b3a60ceab42a6" + integrity sha512-e0MO3wdXWKrLbL0DgGnUV7WHVuw9OUvL4hjgnPkIeEvESk74gAITi5G606JtZPp39cd8HA9VQzCIvA49LpPN5Q== + webidl-conversions@^3.0.0: version "3.0.1" resolved "https://registry.npmjs.org/webidl-conversions/-/webidl-conversions-3.0.1.tgz#24534275e2a7bc6be7bc86611cc16ae0a5654871" From 1bf63aa4502ef32ab8464da4bf1612e28d3ce639 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 17 Jun 2022 15:17:30 -0500 Subject: [PATCH 50/68] Pass all tests. --- .../routes/graphology/index.js | 28 +++++- .../test/routes/graphology.test.js | 93 +++++++++++-------- 2 files changed, 78 insertions(+), 43 deletions(-) diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index 4b0fc501b..dbdb1c7be 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -22,8 +22,9 @@ const Stat = promisify(Fs.stat) const fastifyCors = require('@fastify/cors'); const fastify = require('fastify'); -const arrowPlugin = require('fastify-arrow'); -const gpu_cache = require('../../util/gpu_cache.js'); +const arrowPlugin = require('fastify-arrow'); +const gpu_cache = require('../../util/gpu_cache.js'); +const {collapseTextChangeRangesAcrossMultipleVersions} = require('typescript'); module.exports = async function(fastify, opts) { fastify.register(arrowPlugin); @@ -217,8 +218,25 @@ module.exports = async function(fastify, opts) { result.message = 'Table not found'; reply.code(404).send(result); } else { - const writer = RecordBatchStreamWriter.writeAll(table.toArrow()); - reply.code(200).send(writer.toNodeStream()); + try { + const name = request.params.column; + const column = table.get(name); + const newDfObject = {}; + newDfObject[name] = column; + const result = new DataFrame(newDfObject); + const writer = RecordBatchStreamWriter.writeAll(result.toArrow()); + reply.code(200).send(writer.toNodeStream()); + } catch (e) { + if (e.substring('Unknown column name') != -1) { + result.message = e; + console.log(result); + reply.code(404).send(result); + } else { + result.message = e; + console.log(result); + reply.code(500).send(result); + } + } } } }); @@ -311,7 +329,7 @@ module.exports = async function(fastify, opts) { fastify.route({ method: 'GET', - url: '/edges/', + url: '/edges', handler: async (request, reply) => { let message = 'Error'; let result = {success: false, message: message}; diff --git a/modules/demo/rapids-api-server/test/routes/graphology.test.js b/modules/demo/rapids-api-server/test/routes/graphology.test.js index cc8717e8f..1306d85e6 100644 --- a/modules/demo/rapids-api-server/test/routes/graphology.test.js +++ b/modules/demo/rapids-api-server/test/routes/graphology.test.js @@ -65,7 +65,7 @@ const json_good = { "x": -1.9823756217956543, "y": 250.4990692138672, "score": 0 - }, + } ], "edges": [ @@ -212,20 +212,6 @@ test('list_tables', async (t) => { t.ok(payload.includes('nodes')); }); -test('nodes', async (t) => { - const dir = t.testdir(json_large); - const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_large.txt'; - const app = await build(t); - const load = - await app.inject({method: 'POST', url: '/graphology/read_large_demo?filename=' + rpath}); - const res = await app.inject( - {method: 'GET', url: '/graphology/nodes/', headers: {'accepts': 'application/octet-stream'}}); - const table = tableFromIPC(res.rawPayload); - console.log(table); - t.ok(payload.message.includes('no such file or directory')); - t.equal(payload.statusCode, 404); -}); - test('get_table', async (t) => { const dir = t.testdir(json_good); const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_good.txt'; @@ -234,41 +220,72 @@ test('get_table', async (t) => { const res = await app.inject({ method: 'GET', url: '/graphology/get_table/nodes', + header: {'accepts': 'application/octet-stream'} }); - const table = await tableFromIPC(RecordBatchStreamWriter.writeAll(res.body).toNodeStream()); + const table = tableFromIPC(res.rawPayload); const release = await app.inject({method: 'POST', url: '/graphology/release'}); - console.log(res); - t.ok(payload.includes('nodes')); + t.same(table.schema.names, ['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score']); + t.equal(table.numRows, 2); + t.equal(table.numCols, 8); }); test('get_column', async (t) => { - const app = await build(t); - const res = await app.inject({method: 'GET', url: '/graphology/get_column/nodes/x'}); - const payload = JSON.parse(res.payload); - t.ok(payload.message.includes('no such file or directory')); - t.equal(payload.statusCode, 404); + const dir = t.testdir(json_good); + const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_good.txt'; + const app = await build(t); + const load = await app.inject({method: 'POST', url: '/graphology/read_json?filename=' + rpath}); + const res = await app.inject({ + method: 'GET', + url: '/graphology/get_column/nodes/score', + header: {'accepts': 'application/octet-stream'} + }); + const table = tableFromIPC(res.rawPayload); + const release = await app.inject({method: 'POST', url: '/graphology/release'}); + t.same(table.schema.names, ['score']); + t.equal(table.numRows, 2); + t.equal(table.numCols, 1); }); test('nodes', async (t) => { - const app = await build(t); - const res = await app.inject({method: 'GET', url: '/graphology/nodes'}); - const payload = JSON.parse(res.payload); - t.ok(payload.message.includes('no such file or directory')); - t.equal(payload.statusCode, 404); + const dir = t.testdir(json_large); + const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_large.txt'; + const app = await build(t); + const load = + await app.inject({method: 'POST', url: '/graphology/read_large_demo?filename=' + rpath}); + const res = await app.inject( + {method: 'GET', url: '/graphology/nodes/', headers: {'accepts': 'application/octet-stream'}}); + const table = tableFromIPC(res.rawPayload); + t.ok(table.getChild('nodes')); }); test('nodes/bounds', async (t) => { - const app = await build(t); - const res = await app.inject({method: 'GET', url: '/graphology/nodes/bounds'}); - const payload = JSON.parse(res.payload); - t.ok(payload.message.includes('no such file or directory')); - t.equal(payload.statusCode, 404); + const dir = t.testdir(json_good); + const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_good.txt'; + const app = await build(t); + const load = await app.inject({method: 'POST', url: '/graphology/read_json?filename=' + rpath}); + const res = await app.inject({method: 'GET', url: '/graphology/nodes/bounds'}); + const release = await app.inject({method: 'POST', url: '/graphology/release'}); + t.same(JSON.parse(res.payload), { + 'success': true, + 'message': 'Success', + 'bounds': { + 'xmin': -278.2200012207031, + 'xmax': -1.9823756217956543, + 'ymin': 250.4990692138672, + 'ymax': 436.01004028320307 + } + }); }); test('edges', async (t) => { - const app = await build(t); - const res = await app.inject({method: 'GET', url: '/graphology/edges'}); - const payload = JSON.parse(res.payload); - t.ok(payload.message.includes('no such file or directory')); - t.equal(payload.statusCode, 404); + const dir = t.testdir(json_large); + const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_large.txt'; + const app = await build(t); + const load = + await app.inject({method: 'POST', url: '/graphology/read_large_demo?filename=' + rpath}); + const res = await app.inject( + {method: 'GET', url: '/graphology/edges', header: {'accepts': 'application/octet-stream'}}); + const table = tableFromIPC(res.rawPayload); + const release = await app.inject({method: 'POST', url: '/graphology/release'}); + t.ok(table.getChild('edges')); }); From 6e2968129ff275d0d10ad810ea641a21744ba041 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 17 Jun 2022 15:37:31 -0500 Subject: [PATCH 51/68] Pass all tests with proper data expectations. --- .../routes/graphology/index.js | 2 +- .../test/routes/graphology.test.js | 31 +++++++++++++++++-- 2 files changed, 29 insertions(+), 4 deletions(-) diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/rapids-api-server/routes/graphology/index.js index dbdb1c7be..ab470acdb 100644 --- a/modules/demo/rapids-api-server/routes/graphology/index.js +++ b/modules/demo/rapids-api-server/routes/graphology/index.js @@ -317,7 +317,7 @@ module.exports = async function(fastify, opts) { tiled = tiled.scatter(x, base_offset.cast(new Int32)); tiled = tiled.scatter(y, base_offset.add(1).cast(new Int32)); tiled = tiled.scatter(df.get('size').mul(2), base_offset.add(2).cast(new Int32)); - color = color.hexToIntegers(new Uint32).bitwiseOr(0xff000000); + color = color.hexToIntegers(new Uint32).bitwiseOr(0xef000000); // color = Series.sequence({size: color.length, type: new Int32, init: 0xff0000ff, step: // 0}); tiled = tiled.scatter(color.view(new Float32), base_offset.add(3).cast(new Int32)); diff --git a/modules/demo/rapids-api-server/test/routes/graphology.test.js b/modules/demo/rapids-api-server/test/routes/graphology.test.js index 1306d85e6..73f9df7b4 100644 --- a/modules/demo/rapids-api-server/test/routes/graphology.test.js +++ b/modules/demo/rapids-api-server/test/routes/graphology.test.js @@ -27,15 +27,15 @@ const json_large = { "cluster": 1, "x": 1.3836898237261988, "y": -11.536596764896206, - "size": 0, + "size": 1, "label": "Node n°292, in cluster n°1", "color": "#323455" } } ], "edges": [ - {"key": "geid_115_98", "source": "128", "target": "193"}, - {"key": "geid_115_99", "source": "269", "target": "93"} + {"key": "geid_115_98", "source": "0", "target": "1"}, + {"key": "geid_115_99", "source": "1", "target": "0"} ], "options": {"type": "mixed", "multi": false, "allowSelfLoops": true} }` @@ -256,6 +256,16 @@ test('nodes', async (t) => { {method: 'GET', url: '/graphology/nodes/', headers: {'accepts': 'application/octet-stream'}}); const table = tableFromIPC(res.rawPayload); t.ok(table.getChild('nodes')); + t.same(table.getChild('nodes').toArray(), new Float32Array([ + 0.02944733388721943, + 1, + 0, + -1.4006860109112203e+29, + 0.9705526828765869, + 0, + 2, + -5.515159729197043e+28 + ])) }); test('nodes/bounds', async (t) => { @@ -287,5 +297,20 @@ test('edges', async (t) => { {method: 'GET', url: '/graphology/edges', header: {'accepts': 'application/octet-stream'}}); const table = tableFromIPC(res.rawPayload); const release = await app.inject({method: 'POST', url: '/graphology/release'}); + console.log(table.getChild('edges').toArray()); t.ok(table.getChild('edges')); + t.same(table.getChild('edges').toArray(), new Float32Array([ + 0.02944733388721943, + 1, + -1.701910173408654e+38, + 0.9705526828765869, + 0, + -1.701910173408654e+38, + 0.9705526828765869, + 0, + -1.701910173408654e+38, + 0.02944733388721943, + 1, + -1.701910173408654e+38 + ])) }); From 83fc63b4302a122f02abdecf6cf345577a5bd32a Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 17 Jun 2022 16:34:03 -0500 Subject: [PATCH 52/68] Rename to api-server and create a detailed README.md --- modules/demo/.vscode/launch.json | 2 +- .../.gitignore | 0 modules/demo/api-server/README.md | 87 +++++++++++++++++++ .../{rapids-api-server => api-server}/app.js | 0 .../index.js | 0 .../package.json | 2 +- .../plugins/README.md | 0 .../plugins/sensible.js | 0 .../plugins/support.js | 0 .../routes/README.md | 0 .../routes/graphology/index.js | 0 .../routes/root.js | 0 .../test/helper.js | 0 .../test/plugins/gpu_cache.test.ts | 0 .../test/routes/graphology.test.js | 0 .../test/routes/root.test.js | 0 .../util/gpu_cache.js | 0 modules/demo/rapids-api-server/README.md | 13 --- 18 files changed, 89 insertions(+), 15 deletions(-) rename modules/demo/{rapids-api-server => api-server}/.gitignore (100%) create mode 100644 modules/demo/api-server/README.md rename modules/demo/{rapids-api-server => api-server}/app.js (100%) rename modules/demo/{rapids-api-server => api-server}/index.js (100%) rename modules/demo/{rapids-api-server => api-server}/package.json (96%) rename modules/demo/{rapids-api-server => api-server}/plugins/README.md (100%) rename modules/demo/{rapids-api-server => api-server}/plugins/sensible.js (100%) rename modules/demo/{rapids-api-server => api-server}/plugins/support.js (100%) rename modules/demo/{rapids-api-server => api-server}/routes/README.md (100%) rename modules/demo/{rapids-api-server => api-server}/routes/graphology/index.js (100%) rename modules/demo/{rapids-api-server => api-server}/routes/root.js (100%) rename modules/demo/{rapids-api-server => api-server}/test/helper.js (100%) rename modules/demo/{rapids-api-server => api-server}/test/plugins/gpu_cache.test.ts (100%) rename modules/demo/{rapids-api-server => api-server}/test/routes/graphology.test.js (100%) rename modules/demo/{rapids-api-server => api-server}/test/routes/root.test.js (100%) rename modules/demo/{rapids-api-server => api-server}/util/gpu_cache.js (100%) delete mode 100644 modules/demo/rapids-api-server/README.md diff --git a/modules/demo/.vscode/launch.json b/modules/demo/.vscode/launch.json index 4c8382b18..f03ad6558 100644 --- a/modules/demo/.vscode/launch.json +++ b/modules/demo/.vscode/launch.json @@ -139,7 +139,7 @@ "command": "shellCommand.execute", "args": { "description": "Select a demo to debug", - "command": "echo client-server viz-app rapids-api-server luma graph spatial xterm $(find modules/demo/deck modules/demo/tfjs modules/demo/ipc modules/demo/ssr modules/demo/sql -maxdepth 2 -type f -name 'package.json' -print0 | grep -z -v node_modules | tr -d '\\0' | sed -r 's@modules/demo/@@g' | sed -r 's@/package.json@ @g') | sort -Vr | sed -r 's@\\s@\\n@g'", + "command": "echo client-server viz-app api-server luma graph spatial xterm $(find modules/demo/deck modules/demo/tfjs modules/demo/ipc modules/demo/ssr modules/demo/sql -maxdepth 2 -type f -name 'package.json' -print0 | grep -z -v node_modules | tr -d '\\0' | sed -r 's@modules/demo/@@g' | sed -r 's@/package.json@ @g') | sort -Vr | sed -r 's@\\s@\\n@g'", } }, ] diff --git a/modules/demo/rapids-api-server/.gitignore b/modules/demo/api-server/.gitignore similarity index 100% rename from modules/demo/rapids-api-server/.gitignore rename to modules/demo/api-server/.gitignore diff --git a/modules/demo/api-server/README.md b/modules/demo/api-server/README.md new file mode 100644 index 000000000..2eefafb8e --- /dev/null +++ b/modules/demo/api-server/README.md @@ -0,0 +1,87 @@ +# Fastify HTTP Server Demo + +This project is a Fastify-based node http server that allows +commands and data to be sent to and from the NVIDIA GPUs installed +on the host machine. + +Essentially, the node-rapids system is provided as a backend to any +HTTP client. At this time only limited functionality is available to +load JSON files in the `graphology` graph dataset format, plus API +requests to request Dataframes and their Columns via `apache-arrow`. + +Two endpoints, `graphology/nodes` and `graphology/edges` specifically +return pre-formatted arrays that can be used directly with the +[sigma.js](https://github.com/jacomyal/sigma.js) renderer. An +[extra-large-graphs](https://github.com/jacomyal/sigma.js/pull/1252) example PR is in the works +that utilizes this GPU-accelerated data for rendering larger datasets +than available via only CPU. + +## Main Dependencies +- @rapidsai/cudf +- fastify +- fastify-arrow +- apache-arrow + +An example project that demonstrates this API has a PR being reviewed at [sigma.js](https://github.com/jacomyal/sigma.js), +but this project does not depend on sigma.js.j + +## Installation + +To install dependencies, run the following from the root directory for `node-rapids` + +```bash +yarn +``` + +To run the demo +```bash +# Select the api-server demo from the list of demos +yarn demo +# OR specifically with +cd modules/demo/api-server +yarn start +``` + +## Dataset + +Run the graph generator at https://github.com/thomcom/sigma.js/blob/add-gpu-graph-to-example/examples/extra-large-graphs/generate-graph.js +to create a very large graph using the object + +```js +const state = { + order: 1000000, + size: 2000000, + clusters: 3, + edgesRenderer: 'edges-fast' +}; +``` + +You don't need to edit the file in order to create a graph of the above size. Simply call the .js via node: + +```bash +node graph-generator.js +``` + +Which will create a file `./large-graph.json`. Copy `./large-graph.json` into `api-server/` and then set your +API request to the location of the file relative to `routes/graphology/index.js`: + +``` +curl http://localhost:3000/graphology/read_large_demo?filename=../../large-graph.json +``` + +Which will use parallel JSON parsing to load the graph onto the GPU. + +## Routes + +```txt +/ +/graphology +/graphology/read_json +/graphology/read_large_demo +/graphology/list_tables +/graphology/get_table/:table +/graphology/get_column/:table/:column +/graphology/nodes/bounds +/graphology/nodes +/graphology/edges +/graphology/release diff --git a/modules/demo/rapids-api-server/app.js b/modules/demo/api-server/app.js similarity index 100% rename from modules/demo/rapids-api-server/app.js rename to modules/demo/api-server/app.js diff --git a/modules/demo/rapids-api-server/index.js b/modules/demo/api-server/index.js similarity index 100% rename from modules/demo/rapids-api-server/index.js rename to modules/demo/api-server/index.js diff --git a/modules/demo/rapids-api-server/package.json b/modules/demo/api-server/package.json similarity index 96% rename from modules/demo/rapids-api-server/package.json rename to modules/demo/api-server/package.json index 3a1274928..b774c7e60 100644 --- a/modules/demo/rapids-api-server/package.json +++ b/modules/demo/api-server/package.json @@ -1,5 +1,5 @@ { - "name": "rapids-api-server", + "name": "api-server", "version": "0.0.1", "description": "A fastify-based web server that provides browser-access to GPU resources.", "main": "index.js", diff --git a/modules/demo/rapids-api-server/plugins/README.md b/modules/demo/api-server/plugins/README.md similarity index 100% rename from modules/demo/rapids-api-server/plugins/README.md rename to modules/demo/api-server/plugins/README.md diff --git a/modules/demo/rapids-api-server/plugins/sensible.js b/modules/demo/api-server/plugins/sensible.js similarity index 100% rename from modules/demo/rapids-api-server/plugins/sensible.js rename to modules/demo/api-server/plugins/sensible.js diff --git a/modules/demo/rapids-api-server/plugins/support.js b/modules/demo/api-server/plugins/support.js similarity index 100% rename from modules/demo/rapids-api-server/plugins/support.js rename to modules/demo/api-server/plugins/support.js diff --git a/modules/demo/rapids-api-server/routes/README.md b/modules/demo/api-server/routes/README.md similarity index 100% rename from modules/demo/rapids-api-server/routes/README.md rename to modules/demo/api-server/routes/README.md diff --git a/modules/demo/rapids-api-server/routes/graphology/index.js b/modules/demo/api-server/routes/graphology/index.js similarity index 100% rename from modules/demo/rapids-api-server/routes/graphology/index.js rename to modules/demo/api-server/routes/graphology/index.js diff --git a/modules/demo/rapids-api-server/routes/root.js b/modules/demo/api-server/routes/root.js similarity index 100% rename from modules/demo/rapids-api-server/routes/root.js rename to modules/demo/api-server/routes/root.js diff --git a/modules/demo/rapids-api-server/test/helper.js b/modules/demo/api-server/test/helper.js similarity index 100% rename from modules/demo/rapids-api-server/test/helper.js rename to modules/demo/api-server/test/helper.js diff --git a/modules/demo/rapids-api-server/test/plugins/gpu_cache.test.ts b/modules/demo/api-server/test/plugins/gpu_cache.test.ts similarity index 100% rename from modules/demo/rapids-api-server/test/plugins/gpu_cache.test.ts rename to modules/demo/api-server/test/plugins/gpu_cache.test.ts diff --git a/modules/demo/rapids-api-server/test/routes/graphology.test.js b/modules/demo/api-server/test/routes/graphology.test.js similarity index 100% rename from modules/demo/rapids-api-server/test/routes/graphology.test.js rename to modules/demo/api-server/test/routes/graphology.test.js diff --git a/modules/demo/rapids-api-server/test/routes/root.test.js b/modules/demo/api-server/test/routes/root.test.js similarity index 100% rename from modules/demo/rapids-api-server/test/routes/root.test.js rename to modules/demo/api-server/test/routes/root.test.js diff --git a/modules/demo/rapids-api-server/util/gpu_cache.js b/modules/demo/api-server/util/gpu_cache.js similarity index 100% rename from modules/demo/rapids-api-server/util/gpu_cache.js rename to modules/demo/api-server/util/gpu_cache.js diff --git a/modules/demo/rapids-api-server/README.md b/modules/demo/rapids-api-server/README.md deleted file mode 100644 index 5501b319a..000000000 --- a/modules/demo/rapids-api-server/README.md +++ /dev/null @@ -1,13 +0,0 @@ -# node-rapids/rapids-api-server - -This project defines a Fastify-based node http server that allows -commands and data to be sent to and from the NVIDIA GPUs installed -on the host machine. - -## Routes - -/ -/graphology -/graphology/read_json -/graphology/:table/:column - From 8710adcd601fe367af4b3bcb33f4cd8b93d3b8e3 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Tue, 21 Jun 2022 12:23:37 -0500 Subject: [PATCH 53/68] Update naming and improve package.json, make index.js executable. --- lerna.json | 5 +---- modules/demo/api-server/index.js | 0 modules/demo/api-server/package.json | 20 ++++++++++---------- package.json | 4 +--- 4 files changed, 12 insertions(+), 17 deletions(-) mode change 100644 => 100755 modules/demo/api-server/index.js diff --git a/lerna.json b/lerna.json index de72e9046..ff837517e 100644 --- a/lerna.json +++ b/lerna.json @@ -15,10 +15,7 @@ "modules/demo/ssr/*", "modules/demo/tfjs/*", "modules/demo/client-server", - "modules/demo/sigma.js", - "modules/demo/sigma.js/examples", - "modules/demo/rapids-api-server", - "modules/demo/rapids-api-server", + "modules/demo/api-server", "modules/demo/viz-app", "modules/demo/sql/*" ] diff --git a/modules/demo/api-server/index.js b/modules/demo/api-server/index.js old mode 100644 new mode 100755 diff --git a/modules/demo/api-server/package.json b/modules/demo/api-server/package.json index b774c7e60..71bfab764 100644 --- a/modules/demo/api-server/package.json +++ b/modules/demo/api-server/package.json @@ -1,19 +1,21 @@ { - "name": "api-server", + "private": true, + "name": "demo-api-server", + "main": "index.js", "version": "0.0.1", + "license": "Apache-2.0", + "author": "NVIDIA, Inc. (https://nvidia.com/)", + "maintainers": [ + "Thomson Comer " + ], + "bin": "index.js", "description": "A fastify-based web server that provides browser-access to GPU resources.", - "main": "index.js", - "directories": { - "test": "test" - }, "scripts": { "test": "tap \"test/**/*.test.js\"", "start": "fastify start -l info -P -w app.js", "dev": "fastify start -w -l info -P app.js" }, "keywords": ["rapids.ai", "node", "NVIDIA", "gpu", "Dataframe", "pandas"], - "author": "Thomson Comer", - "license": "MIT", "dependencies": { "@fastify/autoload": "^4.0.0", "@fastify/sensible": "^4.0.0", @@ -27,8 +29,6 @@ }, "devDependencies": { "path": "0.12.7", - "tap": "^16.1.0", - "randomatic": "*", - "node-fetch": "*" + "tap": "^16.1.0" } } diff --git a/package.json b/package.json index a516a40e3..312ed53e4 100644 --- a/package.json +++ b/package.json @@ -74,9 +74,7 @@ "modules/demo/ssr/*", "modules/demo/tfjs/*", "modules/demo/client-server", - "modules/demo/sigma.js", - "modules/demo/sigma.js/examples", - "modules/demo/rapids-api-server", + "modules/demo/api-server", "modules/demo/viz-app", "modules/demo/sql/*" ], From 6514049d9f4b376be41f35d248d4b066c67918a8 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Tue, 21 Jun 2022 12:26:37 -0500 Subject: [PATCH 54/68] One more package change maybe. --- modules/demo/api-server/package.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/demo/api-server/package.json b/modules/demo/api-server/package.json index 71bfab764..fba492f41 100644 --- a/modules/demo/api-server/package.json +++ b/modules/demo/api-server/package.json @@ -1,6 +1,6 @@ { "private": true, - "name": "demo-api-server", + "name": "@rapidsai/demo-api-server", "main": "index.js", "version": "0.0.1", "license": "Apache-2.0", From 7f6f8744943032db937bdc24f358cfaabde8d48f Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Tue, 21 Jun 2022 12:31:26 -0500 Subject: [PATCH 55/68] Fix typescript issue lingering. --- modules/demo/api-server/package.json | 3 +- yarn.lock | 60 +--------------------------- 2 files changed, 2 insertions(+), 61 deletions(-) diff --git a/modules/demo/api-server/package.json b/modules/demo/api-server/package.json index fba492f41..e9bfeee1c 100644 --- a/modules/demo/api-server/package.json +++ b/modules/demo/api-server/package.json @@ -24,8 +24,7 @@ "fastify-arrow": "1.0.0", "fastify-cli": "^3.0.1", "fastify-plugin": "^3.0.0", - "@fastify/cors": "latest", - "typescript": "4.6.4" + "@fastify/cors": "latest" }, "devDependencies": { "path": "0.12.7", diff --git a/yarn.lock b/yarn.lock index c1ac4aa9f..10708687b 100644 --- a/yarn.lock +++ b/yarn.lock @@ -6096,11 +6096,6 @@ data-uri-to-buffer@3.0.1: resolved "https://registry.npmjs.org/data-uri-to-buffer/-/data-uri-to-buffer-3.0.1.tgz#594b8973938c5bc2c33046535785341abc4f3636" integrity sha512-WboRycPNsVw3B3TL559F7kuBUM4d8CgMEvk6xEJlOp7OBPjt6G7z8WMWlD2rOFZLk6OYfFIUGsCOWzcQH9K2og== -data-uri-to-buffer@^4.0.0: - 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version "4.0.10" - resolved "https://registry.npmjs.org/formdata-polyfill/-/formdata-polyfill-4.0.10.tgz#24807c31c9d402e002ab3d8c720144ceb8848423" - integrity sha512-buewHzMvYL29jdeQTVILecSaZKnt/RJWjoZCF5OW60Z67/GmSLBkOFM7qh1PI3zFNtJbaZL5eQu1vLfazOwj4g== - dependencies: - fetch-blob "^3.1.2" - forwarded@0.2.0, forwarded@^0.2.0: version "0.2.0" resolved "https://registry.npmjs.org/forwarded/-/forwarded-0.2.0.tgz#2269936428aad4c15c7ebe9779a84bf0b2a81811" @@ -8888,11 +8868,6 @@ is-number@^3.0.0: dependencies: kind-of "^3.0.2" -is-number@^4.0.0: - version "4.0.0" - resolved "https://registry.npmjs.org/is-number/-/is-number-4.0.0.tgz#0026e37f5454d73e356dfe6564699867c6a7f0ff" - integrity sha512-rSklcAIlf1OmFdyAqbnWTLVelsQ58uvZ66S/ZyawjWqIviTWCjg2PzVGw8WUA+nNuPTqb4wgA+NszrJ+08LlgQ== - is-number@^7.0.0: version "7.0.0" resolved "https://registry.npmjs.org/is-number/-/is-number-7.0.0.tgz#7535345b896734d5f80c4d06c50955527a14f12b" @@ -10336,11 +10311,6 @@ material-ui-confirm@2.1.3: resolved "https://registry.npmjs.org/material-ui-confirm/-/material-ui-confirm-2.1.3.tgz#5f75c56d137603f7fcef22125fa82a8892e4dc5f" integrity sha512-3tu1wk5mo7l03QVzo5qiUv8tL28uoVhwUdu/wpIfMsYVAQmak3eFHMWXq/26ZAyqQKJWIqcF3c43hP5+Q7Wi7w== -math-random@^1.0.1: - 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version "3.2.6" - resolved "https://registry.npmjs.org/node-fetch/-/node-fetch-3.2.6.tgz#6d4627181697a9d9674aae0d61548e0d629b31b9" - integrity sha512-LAy/HZnLADOVkVPubaxHDft29booGglPFDr2Hw0J1AercRh01UiVFm++KMDnJeH9sHgNB4hsXPii7Sgym/sTbw== - dependencies: - data-uri-to-buffer "^4.0.0" - fetch-blob "^3.1.4" - formdata-polyfill "^4.0.10" - node-fetch@2.6.1: version "2.6.1" resolved "https://registry.npmjs.org/node-fetch/-/node-fetch-2.6.1.tgz#045bd323631f76ed2e2b55573394416b639a0052" @@ -12184,15 +12140,6 @@ ramda@0.25.0: resolved "https://registry.npmjs.org/ramda/-/ramda-0.25.0.tgz#8fdf68231cffa90bc2f9460390a0cb74a29b29a9" integrity sha512-GXpfrYVPwx3K7RQ6aYT8KPS8XViSXUVJT1ONhoKPE9VAleW42YE+U+8VEyGWt41EnEQW7gwecYJriTI0pKoecQ== -randomatic@*: - version "3.1.1" - resolved "https://registry.npmjs.org/randomatic/-/randomatic-3.1.1.tgz#b776efc59375984e36c537b2f51a1f0aff0da1ed" - integrity sha512-TuDE5KxZ0J461RVjrJZCJc+J+zCkTb1MbH9AQUq68sMhOMcy9jLcb3BrZKgp9q9Ncltdg4QVqWrH02W2EFFVYw== - dependencies: - is-number "^4.0.0" - kind-of "^6.0.0" - math-random "^1.0.1" - randombytes@^2.0.0, randombytes@^2.0.1, randombytes@^2.0.5, randombytes@^2.1.0: version "2.1.0" resolved "https://registry.npmjs.org/randombytes/-/randombytes-2.1.0.tgz#df6f84372f0270dc65cdf6291349ab7a473d4f2a" @@ -14690,7 +14637,7 @@ typedoc@0.22.10: minimatch "^3.0.4" shiki "^0.9.12" -typescript@4.5.5, typescript@4.6.4: +typescript@4.5.5: version "4.5.5" resolved "https://registry.npmjs.org/typescript/-/typescript-4.5.5.tgz#d8c953832d28924a9e3d37c73d729c846c5896f3" integrity sha512-TCTIul70LyWe6IJWT8QSYeA54WQe8EjQFU4wY52Fasj5UKx88LNYKCgBEHcOMOrFF1rKGbD8v/xcNWVUq9SymA== @@ -15087,11 +15034,6 @@ web-streams-polyfill@2.1.1: resolved "https://registry.npmjs.org/web-streams-polyfill/-/web-streams-polyfill-2.1.1.tgz#2c82b6193849ccb9efaa267772c28260ef68d6d2" integrity sha512-dlNpL2aab3g8CKfGz6rl8FNmGaRWLLn2g/DtSc9IjB30mEdE6XxzPfPSig5BwGSzI+oLxHyETrQGKjrVVhbLCg== -web-streams-polyfill@^3.0.3: - version "3.2.1" - resolved "https://registry.npmjs.org/web-streams-polyfill/-/web-streams-polyfill-3.2.1.tgz#71c2718c52b45fd49dbeee88634b3a60ceab42a6" - integrity sha512-e0MO3wdXWKrLbL0DgGnUV7WHVuw9OUvL4hjgnPkIeEvESk74gAITi5G606JtZPp39cd8HA9VQzCIvA49LpPN5Q== - webidl-conversions@^3.0.0: version "3.0.1" resolved "https://registry.npmjs.org/webidl-conversions/-/webidl-conversions-3.0.1.tgz#24534275e2a7bc6be7bc86611cc16ae0a5654871" From 403cb6a5d71bb7dc664aa6b3e8fa72cdaca7881f Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Tue, 21 Jun 2022 15:38:10 -0500 Subject: [PATCH 56/68] Missing end tag for last block in README.md --- modules/demo/api-server/README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/modules/demo/api-server/README.md b/modules/demo/api-server/README.md index 2eefafb8e..332f85d2a 100644 --- a/modules/demo/api-server/README.md +++ b/modules/demo/api-server/README.md @@ -85,3 +85,5 @@ Which will use parallel JSON parsing to load the graph onto the GPU. /graphology/nodes /graphology/edges /graphology/release +``` + From 9a605c0fd4ea90df57531e03e61ab999e754f8f2 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Wed, 22 Jun 2022 11:38:54 -0500 Subject: [PATCH 57/68] Make root and graphology schemas match. --- .../api-server/routes/graphology/index.js | 40 +---------------- modules/demo/api-server/routes/root.js | 20 +-------- .../api-server/test/routes/graphology.test.js | 1 - .../demo/api-server/test/routes/root.test.js | 45 ++++++++++++++----- 4 files changed, 37 insertions(+), 69 deletions(-) diff --git a/modules/demo/api-server/routes/graphology/index.js b/modules/demo/api-server/routes/graphology/index.js index ab470acdb..a40dac86a 100644 --- a/modules/demo/api-server/routes/graphology/index.js +++ b/modules/demo/api-server/routes/graphology/index.js @@ -25,6 +25,7 @@ const fastify = require('fastify') const arrowPlugin = require('fastify-arrow'); const gpu_cache = require('../../util/gpu_cache.js'); const {collapseTextChangeRangesAcrossMultipleVersions} = require('typescript'); +const root_schema = require('../../util/schema.js'); module.exports = async function(fastify, opts) { fastify.register(arrowPlugin); @@ -36,44 +37,7 @@ module.exports = async function(fastify, opts) { fastify.decorate('readLargeGraphDemo', gpu_cache.readLargeGraphDemo); fastify.decorate('clearDataFrames', gpu_cache.clearDataframes); fastify.get('/', async function(request, reply) { - return { - graphology: { - description: 'The graphology api provides GPU acceleration of graphology datasets.', - schema: { - read_json: { - filename: 'A URI to a graphology json dataset file.', - result: `Causes the node-rapids backend to attempt to load the json object specified - by :filename. The GPU with attempt to parse the json file asynchronously and will - return OK/ Not Found/ or Fail based on the file status. - If the load is successful, three tables will be created in the node-rapids backend: - nodes, edges, clusters, and tags. The root objects in the json target must match - these names and order.`, - returns: 'Result OK/Not Found/Fail' - }, - read_large_demo: { - filename: - 'A URI to a graphology json dataset file matching the sigma.js/examples/large-demos spec.', - result: `Produces the same result as 'read_json'. - If the load is successful, three tables will be created in the node-rapids backend: - nodes, edges, and options.`, - returns: 'Result OK/Not Found/Fail' - }, - list_tables: {returns: 'Tables that are available presently in GPU memory.'}, - get_table: { - ':table': - {table: 'The name of the table that has been allocated previously into GPU memory.'} - }, - get_column: {':table': {':column': {table: 'The table name', column: 'The column name'}}}, - nodes: { - returns: - 'Returns the existing nodes table after applying normalization functions for sigma.js' - }, - nodes: {bounds: {returns: 'Returns the x and y bounds to be used in rendering.'}}, - edges: - {return: 'Returns the existing edges table after applying normalization for sigma.js'} - } - } - } + return root_schema; }); fastify.route({ diff --git a/modules/demo/api-server/routes/root.js b/modules/demo/api-server/routes/root.js index a365538ed..ea6e33ecc 100644 --- a/modules/demo/api-server/routes/root.js +++ b/modules/demo/api-server/routes/root.js @@ -13,26 +13,10 @@ // limitations under the License. const fastify = require('fastify'); +const root_schema = require('../util/schema.js'); module.exports = async function(fastify, opts) { fastify.get('/', async function(request, reply) { - return { - graphology: { - description: 'The graphology api provides GPU acceleration of graphology datasets.', - schema: { - read_json: { - filename: 'A URI to a graphology json dataset file.', - returns: 'Result OK/Not Found/Fail' - }, - list_tables: - {returns: 'An object containing graphology related datasets resident on GPU memory.'}, - - ':table': { - ':column': 'The name of the column you want to request.', - returns: 'An arrow buffer of the column contents.' - } - } - } - } + return root_schema; }); } diff --git a/modules/demo/api-server/test/routes/graphology.test.js b/modules/demo/api-server/test/routes/graphology.test.js index 73f9df7b4..5a130dd2f 100644 --- a/modules/demo/api-server/test/routes/graphology.test.js +++ b/modules/demo/api-server/test/routes/graphology.test.js @@ -297,7 +297,6 @@ test('edges', async (t) => { {method: 'GET', url: '/graphology/edges', header: {'accepts': 'application/octet-stream'}}); const table = tableFromIPC(res.rawPayload); const release = await app.inject({method: 'POST', url: '/graphology/release'}); - console.log(table.getChild('edges').toArray()); t.ok(table.getChild('edges')); t.same(table.getChild('edges').toArray(), new Float32Array([ 0.02944733388721943, diff --git a/modules/demo/api-server/test/routes/root.test.js b/modules/demo/api-server/test/routes/root.test.js index a7de34e93..8bb07794b 100644 --- a/modules/demo/api-server/test/routes/root.test.js +++ b/modules/demo/api-server/test/routes/root.test.js @@ -7,19 +7,40 @@ test('root returns API description', async (t) => { const app = await build(t); const res = await app.inject({url: '/'}); t.same(JSON.parse(res.payload), { - 'graphology': { - 'description': 'The graphology api provides GPU acceleration of graphology datasets.', - 'schema': { - 'read_json': { - 'filename': 'A URI to a graphology json dataset file.', - 'returns': 'Result OK/Not Found/Fail' + graphology: { + description: 'The graphology api provides GPU acceleration of graphology datasets.', + schema: { + read_json: { + filename: 'A URI to a graphology json dataset file.', + result: `Causes the node-rapids backend to attempt to load the json object specified + by :filename. The GPU with attempt to parse the json file asynchronously and will + return OK/ Not Found/ or Fail based on the file status. + If the load is successful, three tables will be created in the node-rapids backend: + nodes, edges, clusters, and tags. The root objects in the json target must match + these names and order.`, + returns: 'Result OK/Not Found/Fail' }, - 'list_tables': - {'returns': 'An object containing graphology related datasets resident on GPU memory.'}, - ':table': { - ':column': 'The name of the column you want to request.', - 'returns': 'An arrow buffer of the column contents.' - } + read_large_demo: { + filename: + 'A URI to a graphology json dataset file matching the sigma.js/examples/large-demos spec.', + result: `Produces the same result as 'read_json'. + If the load is successful, three tables will be created in the node-rapids backend: + nodes, edges, and options.`, + returns: 'Result OK/Not Found/Fail' + }, + list_tables: {returns: 'Tables that are available presently in GPU memory.'}, + get_table: { + ':table': + {table: 'The name of the table that has been allocated previously into GPU memory.'} + }, + get_column: {':table': {':column': {table: 'The table name', column: 'The column name'}}}, + nodes: { + returns: + 'Returns the existing nodes table after applying normalization functions for sigma.js' + }, + nodes: {bounds: {returns: 'Returns the x and y bounds to be used in rendering.'}}, + edges: + {return: 'Returns the existing edges table after applying normalization for sigma.js'} } } }); From 7c5aaaba455ad2fd76b3e821e4738fb3b8397a5a Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Wed, 22 Jun 2022 17:18:37 -0500 Subject: [PATCH 58/68] Fix gpu_cache tests and add copyrights. --- .../api-server/test/plugins/gpu_cache.test.js | 41 ++++++++ .../api-server/test/plugins/gpu_cache.test.ts | 94 ------------------ .../api-server/test/routes/graphology.test.js | 97 ++++--------------- .../demo/api-server/test/routes/root.test.js | 14 +++ modules/demo/api-server/util/gpu_cache.js | 9 +- 5 files changed, 77 insertions(+), 178 deletions(-) create mode 100644 modules/demo/api-server/test/plugins/gpu_cache.test.js delete mode 100644 modules/demo/api-server/test/plugins/gpu_cache.test.ts diff --git a/modules/demo/api-server/test/plugins/gpu_cache.test.js b/modules/demo/api-server/test/plugins/gpu_cache.test.js new file mode 100644 index 000000000..b8453a337 --- /dev/null +++ b/modules/demo/api-server/test/plugins/gpu_cache.test.js @@ -0,0 +1,41 @@ +// Copyright (c) 2022, NVIDIA CORPORATION. +// +// Licensed under the Apache License, Version 2.0 (the "License"); +// you may not use this file except in compliance with the License. +// You may obtain a copy of the License at +// +// http://www.apache.org/licenses/LICENSE-2.0 +// +// Unless required by applicable law or agreed to in writing, software +// distributed under the License is distributed on an "AS IS" BASIS, +// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +// See the License for the specific language governing permissions and +// limitations under the License. + +'use strict' + +const {test} = require('tap') +const Fastify = require('fastify') +const Support = require('../../plugins/support') +const fixtures = require('../fixtures.js'); +const gpuCache = require('../../util/gpu_cache.js'); + +test('clearCachedGPUData()', async t => { + await gpuCache.setDataframe('bob', 5); + const result = await gpuCache.getDataframe('bob'); + t.equal(result, 5); +}); + +test('read_large_graph_demo', async t => { + const dir = t.testdir(fixtures); + const result = await gpuCache.readLargeGraphDemo(dir + '/json_large/json_large.txt'); + await gpuCache.clearDataframes(); + t.same(Object.keys(result), ['nodes', 'edges', 'options']); +}); + +test('readGraphology', async t => { + const dir = t.testdir(fixtures); + const result = await gpuCache.readGraphology(dir + '/json_good/json_good.txt'); + await gpuCache.clearDataframes(); + t.same(Object.keys(result), ['nodes', 'edges', 'tags', 'clusters']); +}); diff --git a/modules/demo/api-server/test/plugins/gpu_cache.test.ts b/modules/demo/api-server/test/plugins/gpu_cache.test.ts deleted file mode 100644 index d93f3220e..000000000 --- a/modules/demo/api-server/test/plugins/gpu_cache.test.ts +++ /dev/null @@ -1,94 +0,0 @@ -'use strict' - -const {test} = require('tap') -const Fastify = require('fastify') -const Support = require('../../plugins/support') -const {StringSeries} = require('@rapidsai/cudf'); - -test('clearCachedGPUData()', async (t) => { - const gpuCache = require('../../util/gpu_cache.js'); - gpuCache.setDataframe('bob', 5); - t.equal(gpuCache.getDataframe('bob'), 5); -}); - -test('readLargeGraphDemo', (t) => { - const gpuCache = - t.mock('../../util/gpu_cache.js', {'StringSeries': {read_text: (path, delim) => path}}) - gpuCache.readLargeGraphDemo( - `{ - 'attributes': {}, - 'nodes': - [ - { - 'key': '0', - 'attributes': { - 'cluster': 1, - 'x': 2.1690608678749332, - 'y': -0.3294237082577565, - 'size': 0.3333333333333333, - 'label': 'Node n°1, in cluster n°1', - 'color': '#486add' - } - }, - { - 'key': '1', - 'attributes': { - 'cluster': 2, - 'x': 1.535086271659372, - 'y': 1.5674358572750524, - 'size': 1, - 'label': 'Node n°2, in cluster n°2', - 'color': '#71b952' - } - }, - ], - 'edges': - [ - {'key': 'geid_99_0', 'source': '2', 'target': '1'}, - {'key': 'geid_99_1', 'source': '4', 'target': '1'}, - ], - 'options': {'type': 'mixed', 'multi': false, 'allowSelfLoops': true} -}`) -}); - test('readGraphology', async (t) => { - const gpuCache = - t.mock('../../util/gpu_cache.js', {StringSeries: {read_text: (path, delim) => path}}) - gpuCache.readGraphology( - ` -{ - "nodes": [ - { - "key": "customer data management", - "label": "Customer data management", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Customer%20data%20management", - "cluster": "7", - "x": -278.2200012207031, - "y": 436.0100402832031, - "score": 0 - }, - { - "key": "educational data mining", - "label": "Educational data mining", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Educational%20data%20mining", - "cluster": "7", - "x": -1.9823756217956543, - "y": 250.4990692138672, - "score": 0 - }, - ], - "edges": [ - ["office suite", "human interactome"], - ["educational data mining", "human interactome"], - ], - "clusters": [ - { "key": "0", "color": "#6c3e81", "clusterLabel": "human interactome" }, - { "key": "1", "color": "#666666", "clusterLabel": "Spreadsheets" }, - ], - "tags": [ - { "key": "Chart type", "image": "charttype.svg" }, - { "key": "Company", "image": "company.svg" }, - ] -}`); - }); diff --git a/modules/demo/api-server/test/routes/graphology.test.js b/modules/demo/api-server/test/routes/graphology.test.js index 5a130dd2f..b0e56271b 100644 --- a/modules/demo/api-server/test/routes/graphology.test.js +++ b/modules/demo/api-server/test/routes/graphology.test.js @@ -1,88 +1,24 @@ +// Copyright (c) 2022, NVIDIA CORPORATION. +// +// Licensed under the Apache License, Version 2.0 (the "License"); +// you may not use this file except in compliance with the License. +// You may obtain a copy of the License at +// +// http://www.apache.org/licenses/LICENSE-2.0 +// +// Unless required by applicable law or agreed to in writing, software +// distributed under the License is distributed on an "AS IS" BASIS, +// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +// See the License for the specific language governing permissions and +// limitations under the License. + 'use strict' const {dir} = require('console'); const {test} = require('tap'); const {build} = require('../helper'); const {tableFromIPC, RecordBatchStreamWriter} = require('apache-arrow'); - -const json_large = { - 'json_large.txt': - ` { - "attributes": {}, - "nodes": [ - { - "key": "290", - "attributes": { - "cluster": 0, - "x": -13.364310772761677, - "y": 4.134339113107921, - "size": 0, - "label": "Node n°291, in cluster n°0", - "color": "#e24b04" - } - }, - { - "key": "291", - "attributes": { - "cluster": 1, - "x": 1.3836898237261988, - "y": -11.536596764896206, - "size": 1, - "label": "Node n°292, in cluster n°1", - "color": "#323455" - } - } - ], - "edges": [ - {"key": "geid_115_98", "source": "0", "target": "1"}, - {"key": "geid_115_99", "source": "1", "target": "0"} - ], - "options": {"type": "mixed", "multi": false, "allowSelfLoops": true} - }` -}; - -const json_good = { - 'json_good.txt': - ` { - "nodes": - [ - { - "key": "customer data management", - "label": "Customer data management", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Customer%20data%20management", - "cluster": "7", - "x": -278.2200012207031, - "y": 436.0100402832031, - "score": 0 - }, - { - "key": "educational data mining", - "label": "Educational data mining", - "tag": "Field", - "URL": "https://en.wikipedia.org/wiki/Educational%20data%20mining", - "cluster": "7", - "x": -1.9823756217956543, - "y": 250.4990692138672, - "score": 0 - } - ], - "edges": - [ - ["office suite", "human interactome"], - ["educational data mining", "human interactome"], - ], - "clusters": - [ - {"key": "0", "color": "#6c3e81", "clusterLabel": "human interactome"}, - {"key": "1", "color": "#666666", "clusterLabel": "Spreadsheets"}, - ], - "tags": [ - {"key": "Chart type", "image": "charttype.svg"}, - {"key": "Company", "image": "company.svg"}, - ] - } ` -}; +const {json_large, json_good} = require('../fixtures.js'); test('graphology root returns api description', async t => { const app = await build(t); @@ -249,7 +185,8 @@ test('get_column', async (t) => { test('nodes', async (t) => { const dir = t.testdir(json_large); const rpath = '../../test/routes/' + dir.substring(dir.lastIndexOf('/')) + '/json_large.txt'; - const app = await build(t); + console.log(rpath); + const app = await build(t); const load = await app.inject({method: 'POST', url: '/graphology/read_large_demo?filename=' + rpath}); const res = await app.inject( diff --git a/modules/demo/api-server/test/routes/root.test.js b/modules/demo/api-server/test/routes/root.test.js index 8bb07794b..19444d37c 100644 --- a/modules/demo/api-server/test/routes/root.test.js +++ b/modules/demo/api-server/test/routes/root.test.js @@ -1,3 +1,17 @@ +// Copyright (c) 2022, NVIDIA CORPORATION. +// +// Licensed under the Apache License, Version 2.0 (the "License"); +// you may not use this file except in compliance with the License. +// You may obtain a copy of the License at +// +// http://www.apache.org/licenses/LICENSE-2.0 +// +// Unless required by applicable law or agreed to in writing, software +// distributed under the License is distributed on an "AS IS" BASIS, +// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +// See the License for the specific language governing permissions and +// limitations under the License. + 'use strict' const {test} = require('tap'); diff --git a/modules/demo/api-server/util/gpu_cache.js b/modules/demo/api-server/util/gpu_cache.js index d7198a5df..47461c8e2 100644 --- a/modules/demo/api-server/util/gpu_cache.js +++ b/modules/demo/api-server/util/gpu_cache.js @@ -87,15 +87,15 @@ module.exports = { console.log('readLargeGraphDemo'); const dataset = StringSeries.readText(path, ''); let split = dataset.split('"options":'); - if (split.length <= 1) { throw 'Bad readLargeGraphDemo format: tags not found.'; } + if (split.length <= 1) { throw 'Bad readLargeGraphDemo format: options not found.'; }; const toptions = split.gather([1], false); let rest = split.gather([0], false); split = rest.split('"edges":'); - if (split.length <= 1) { throw 'Bad readLargeGraphDemo format: tags not found.'; } + if (split.length <= 1) { throw 'Bad readLargeGraphDemo format: edges not found.'; }; const tedges = split.gather([1], false); rest = split.gather([0], false); split = rest.split('"nodes":'); - if (split.length <= 1) { throw 'Bad readLargeGraphDemo format: tags not found.'; } + if (split.length <= 1) { throw 'Bad readLargeGraphDemo format: nodes not found.'; }; const tnodes = split.gather([1], false); const nodes = json_key_attributes_to_dataframe(tnodes); const edges = json_aos_to_dataframe( @@ -111,7 +111,8 @@ module.exports = { async readGraphology(path) { console.log('readGraphology'); const dataset = StringSeries.readText(path, ''); - let split = dataset.split('"tags":'); + if (dataset.length == 0) { throw 'File does not exist or is empty.' } + let split = dataset.split('"tags":'); if (split.length <= 1) { throw 'Bad graphology format: tags not found.'; } const ttags = split.gather([1], false); let rest = split.gather([0], false); From d2189eb533ccc2b038d9b01d574c0dd4cb4f05e0 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Wed, 22 Jun 2022 17:48:07 -0500 Subject: [PATCH 59/68] Refactor math a little, remove unneeded typescript override. --- .../api-server/routes/graphology/index.js | 64 +++++++++---------- package.json | 3 +- 2 files changed, 31 insertions(+), 36 deletions(-) diff --git a/modules/demo/api-server/routes/graphology/index.js b/modules/demo/api-server/routes/graphology/index.js index a40dac86a..5c001b078 100644 --- a/modules/demo/api-server/routes/graphology/index.js +++ b/modules/demo/api-server/routes/graphology/index.js @@ -25,7 +25,7 @@ const fastify = require('fastify') const arrowPlugin = require('fastify-arrow'); const gpu_cache = require('../../util/gpu_cache.js'); const {collapseTextChangeRangesAcrossMultipleVersions} = require('typescript'); -const root_schema = require('../../util/schema.js'); +const root_schema = require('../../util/schema.js'); module.exports = async function(fastify, opts) { fastify.register(arrowPlugin); @@ -36,9 +36,7 @@ module.exports = async function(fastify, opts) { fastify.decorate('readGraphology', gpu_cache.readGraphology); fastify.decorate('readLargeGraphDemo', gpu_cache.readLargeGraphDemo); fastify.decorate('clearDataFrames', gpu_cache.clearDataframes); - fastify.get('/', async function(request, reply) { - return root_schema; - }); + fastify.get('/', async function(request, reply) { return root_schema; }); fastify.route({ method: 'POST', @@ -265,21 +263,18 @@ module.exports = async function(fastify, opts) { // Duplicatin the sigma.j createNormalizationFunction here because there's no other way // to let the Graph object compute it. // - let x = df.get('x'); - let y = df.get('y'); - let color = df.get('color'); - const ratio = (() => { - const [xMin, xMax] = x.minmax(); - const [yMin, yMax] = y.minmax(); - return Math.max(xMax - xMin, yMax - yMin); - })(); - const dX = x.minmax().reduce((min, max) => max + min, 0) / 2.0; - const dY = y.minmax().reduce((min, max) => max + min, 0) / 2.0; - x = x.add(-1.0 * dX).mul(1.0 / ratio).add(0.5); - y = y.add(-1.0 * dY).mul(1.0 / ratio).add(0.5); - // done with createNormalizationFunction - tiled = tiled.scatter(x, base_offset.cast(new Int32)); - tiled = tiled.scatter(y, base_offset.add(1).cast(new Int32)); + let x = df.get('x'); + let y = df.get('y'); + let color = df.get('color'); + const [xMin, xMax] = x.minmax(); + const [yMin, yMax] = y.minmax(); + const ratio = Math.max(xMax - xMin, yMax - yMin); + const dX = (xMax + xMin) / 2.0; + const dY = (yMax + yMin) / 2.0; + x = x.add(-1.0 * dX).mul(1.0 / ratio).add(0.5); + y = y.add(-1.0 * dY).mul(1.0 / ratio).add(0.5); + tiled = tiled.scatter(x, base_offset.cast(new Int32)); + tiled = tiled.scatter(y, base_offset.add(1).cast(new Int32)); tiled = tiled.scatter(df.get('size').mul(2), base_offset.add(2).cast(new Int32)); color = color.hexToIntegers(new Uint32).bitwiseOr(0xef000000); // color = Series.sequence({size: color.length, type: new Int32, init: 0xff0000ff, step: @@ -311,21 +306,22 @@ module.exports = async function(fastify, opts) { // Duplicatin the sigma.j createNormalizationFunction here because there's no other way // to let the Graph object compute it. // - let source = edges.get('source'); - let target = edges.get('target'); - let x = df.get('x'); - let y = df.get('y'); - const ratio = - Series.new([x._col.max() - x._col.min(), y._col.max() - y._col.min()])._col.max(); - const dX = (x._col.max() + x._col.min()) / 2.0; - const dY = (y._col.max() + y._col.min()) / 2.0; - x = x._col.add(-1.0 * dX).mul(1.0 / ratio).add(0.5); - y = y._col.add(-1.0 * dY).mul(1.0 / ratio).add(0.5); - const source_xmap = x.gather(source._col.cast(new Int32)); - const source_ymap = y.gather(source._col.cast(new Int32)); - const target_xmap = x.gather(target._col.cast(new Int32)); - const target_ymap = y.gather(target._col.cast(new Int32)); - const color = Series.new(['#999']) + let source = edges.get('source'); + let target = edges.get('target'); + let x = df.get('x'); + let y = df.get('y'); + const [xMin, xMax] = x.minmax(); + const [yMin, yMax] = y.minmax(); + const ratio = Math.max(xMax - xMin, yMax - yMin); + const dX = (xMax + xMin) / 2.0; + const dY = (yMax + yMin) / 2.0; + x = x._col.add(-1.0 * dX).mul(1.0 / ratio).add(0.5); + y = y._col.add(-1.0 * dY).mul(1.0 / ratio).add(0.5); + const source_xmap = x.gather(source._col.cast(new Int32)); + const source_ymap = y.gather(source._col.cast(new Int32)); + const target_xmap = x.gather(target._col.cast(new Int32)); + const target_ymap = y.gather(target._col.cast(new Int32)); + const color = Series.new(['#999']) .hexToIntegers(new Int32) .bitwiseOr(0xff000000) .view(new Float32) diff --git a/package.json b/package.json index 312ed53e4..404b68913 100644 --- a/package.json +++ b/package.json @@ -143,8 +143,7 @@ "**/gl-matrix": "3.3.0", "**/jsdom": "16.6.0", "**/math.gl": "3.5.7", - "**/react-map-gl": "5.3.16", - "**/typescript": "4.5.5" + "**/react-map-gl": "5.3.16" }, "release": { "analyzeCommits": "simple-commit-message" From b1df58329acb9e6853e73153eddfe322d1ef822b Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Wed, 22 Jun 2022 18:07:50 -0500 Subject: [PATCH 60/68] Type hints. --- modules/demo/api-server/routes/graphology/index.js | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/modules/demo/api-server/routes/graphology/index.js b/modules/demo/api-server/routes/graphology/index.js index 5c001b078..fe6fd02d6 100644 --- a/modules/demo/api-server/routes/graphology/index.js +++ b/modules/demo/api-server/routes/graphology/index.js @@ -292,7 +292,9 @@ module.exports = async function(fastify, opts) { handler: async (request, reply) => { let message = 'Error'; let result = {success: false, message: message}; - const df = await fastify.getDataframe('nodes'); + /** @type DataFrame<{x: Float32, y: Float32}> */ + const df = await fastify.getDataframe('nodes'); + /** @type DataFrame<{x: Int32, y: Int32}> */ const edges = await fastify.getDataframe('edges'); if (df == undefined) { result.message = 'Table not found'; From 50a63f2d972958d3a904f2a8f0560797911f2ca6 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Thu, 23 Jun 2022 17:07:08 -0500 Subject: [PATCH 61/68] Crucial small changes to fix syncronization with sigma.js/examples/extra-large-graphs. --- modules/demo/api-server/.gitignore | 3 +++ modules/demo/api-server/package.json | 4 ++-- modules/demo/api-server/routes/graphology/index.js | 4 ++-- 3 files changed, 7 insertions(+), 4 deletions(-) diff --git a/modules/demo/api-server/.gitignore b/modules/demo/api-server/.gitignore index 52962c254..a82d1430a 100644 --- a/modules/demo/api-server/.gitignore +++ b/modules/demo/api-server/.gitignore @@ -56,3 +56,6 @@ profile-* profile* *clinic* *flamegraph* + +# Node-rapids .cache symlink +.cache diff --git a/modules/demo/api-server/package.json b/modules/demo/api-server/package.json index e9bfeee1c..8b13c9568 100644 --- a/modules/demo/api-server/package.json +++ b/modules/demo/api-server/package.json @@ -12,8 +12,8 @@ "description": "A fastify-based web server that provides browser-access to GPU resources.", "scripts": { "test": "tap \"test/**/*.test.js\"", - "start": "fastify start -l info -P -w app.js", - "dev": "fastify start -w -l info -P app.js" + "start": "fastify start -l info -P -p 3010 -w app.js", + "dev": "fastify start -w -l info -P -p 3010 app.js" }, "keywords": ["rapids.ai", "node", "NVIDIA", "gpu", "Dataframe", "pandas"], "dependencies": { diff --git a/modules/demo/api-server/routes/graphology/index.js b/modules/demo/api-server/routes/graphology/index.js index fe6fd02d6..b551a07e6 100644 --- a/modules/demo/api-server/routes/graphology/index.js +++ b/modules/demo/api-server/routes/graphology/index.js @@ -29,7 +29,7 @@ const root_schema = require('../../util/sch module.exports = async function(fastify, opts) { fastify.register(arrowPlugin); - fastify.register(fastifyCors, {origin: 'http://localhost:3002'}); + fastify.register(fastifyCors, {origin: 'http://localhost:3000'}); fastify.decorate('setDataframe', gpu_cache.setDataframe); fastify.decorate('getDataframe', gpu_cache.getDataframe); fastify.decorate('listDataframes', gpu_cache.listDataframes); @@ -247,7 +247,7 @@ module.exports = async function(fastify, opts) { fastify.route({ method: 'GET', - url: '/nodes/', + url: '/nodes', handler: async (request, reply) => { let message = 'Error'; let result = {success: false, message: message}; From 1ba06f980d9fa602a93df0cc7c3aa0067e6d685f Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 24 Jun 2022 13:02:30 -0500 Subject: [PATCH 62/68] Get rid of various uses of ._col and get better error checking in tests. --- .../api-server/routes/graphology/index.js | 21 ++++++++++--------- .../api-server/test/routes/graphology.test.js | 9 +++++--- modules/demo/api-server/util/gpu_cache.js | 12 +++++------ 3 files changed, 23 insertions(+), 19 deletions(-) diff --git a/modules/demo/api-server/routes/graphology/index.js b/modules/demo/api-server/routes/graphology/index.js index b551a07e6..fcad123a2 100644 --- a/modules/demo/api-server/routes/graphology/index.js +++ b/modules/demo/api-server/routes/graphology/index.js @@ -236,10 +236,11 @@ module.exports = async function(fastify, opts) { const x = df.get('x'); const y = df.get('y'); - result.bounds = - {xmin: x._col.min(), xmax: x._col.max(), ymin: y._col.min(), ymax: y._col.max()}; - result.message = 'Success'; - result.success = true; + const [xmin, xmax] = x.minmax(); + const [ymin, ymax] = y.minmax(); + result.bounds = {xmin: xmin, xmax: xmax, ymin: ymin, ymax: ymax}; + result.message = 'Success'; + result.success = true; reply.code(200).send(result); } } @@ -317,12 +318,12 @@ module.exports = async function(fastify, opts) { const ratio = Math.max(xMax - xMin, yMax - yMin); const dX = (xMax + xMin) / 2.0; const dY = (yMax + yMin) / 2.0; - x = x._col.add(-1.0 * dX).mul(1.0 / ratio).add(0.5); - y = y._col.add(-1.0 * dY).mul(1.0 / ratio).add(0.5); - const source_xmap = x.gather(source._col.cast(new Int32)); - const source_ymap = y.gather(source._col.cast(new Int32)); - const target_xmap = x.gather(target._col.cast(new Int32)); - const target_ymap = y.gather(target._col.cast(new Int32)); + x = x.add(-1.0 * dX).mul(1.0 / ratio).add(0.5); + y = y.add(-1.0 * dY).mul(1.0 / ratio).add(0.5); + const source_xmap = x.gather(source.cast(new Int32)); + const source_ymap = y.gather(source.cast(new Int32)); + const target_xmap = x.gather(target.cast(new Int32)); + const target_ymap = y.gather(target.cast(new Int32)); const color = Series.new(['#999']) .hexToIntegers(new Int32) .bitwiseOr(0xff000000) diff --git a/modules/demo/api-server/test/routes/graphology.test.js b/modules/demo/api-server/test/routes/graphology.test.js index b0e56271b..f6cd208c8 100644 --- a/modules/demo/api-server/test/routes/graphology.test.js +++ b/modules/demo/api-server/test/routes/graphology.test.js @@ -158,7 +158,8 @@ test('get_table', async (t) => { url: '/graphology/get_table/nodes', header: {'accepts': 'application/octet-stream'} }); - const table = tableFromIPC(res.rawPayload); + t.same(res.statusCode, 200); + const table = tableFromIPC(res.rawPayload); const release = await app.inject({method: 'POST', url: '/graphology/release'}); t.same(table.schema.names, ['key', 'label', 'tag', 'URL', 'cluster', 'x', 'y', 'score']); t.equal(table.numRows, 2); @@ -175,7 +176,8 @@ test('get_column', async (t) => { url: '/graphology/get_column/nodes/score', header: {'accepts': 'application/octet-stream'} }); - const table = tableFromIPC(res.rawPayload); + t.same(res.statusCode, 200); + const table = tableFromIPC(res.rawPayload); const release = await app.inject({method: 'POST', url: '/graphology/release'}); t.same(table.schema.names, ['score']); t.equal(table.numRows, 2); @@ -190,7 +192,8 @@ test('nodes', async (t) => { const load = await app.inject({method: 'POST', url: '/graphology/read_large_demo?filename=' + rpath}); const res = await app.inject( - {method: 'GET', url: '/graphology/nodes/', headers: {'accepts': 'application/octet-stream'}}); + {method: 'GET', url: '/graphology/nodes', headers: {'accepts': 'application/octet-stream'}}); + t.same(res.statusCode, 200); const table = tableFromIPC(res.rawPayload); t.ok(table.getChild('nodes')); t.same(table.getChild('nodes').toArray(), new Float32Array([ diff --git a/modules/demo/api-server/util/gpu_cache.js b/modules/demo/api-server/util/gpu_cache.js index 47461c8e2..e9e10e50a 100644 --- a/modules/demo/api-server/util/gpu_cache.js +++ b/modules/demo/api-server/util/gpu_cache.js @@ -29,7 +29,7 @@ function json_key_attributes_to_dataframe(str) { const no_open_list = str.split('[\n').gather([1], false); const tokenized = no_open_list.split('},'); columns.forEach((col, ix) => { - const parse_result = tokenized._col.getJSONObject('.attributes.' + columns[ix]); + const parse_result = tokenized.getJSONObject('.attributes.' + columns[ix]); const string_array = Series.new(parse_result); arr[col] = string_array.cast(dtypes[ix]); }); @@ -42,7 +42,7 @@ function json_aos_to_dataframe(str, columns, dtypes) { columns.forEach((col, ix) => { const no_open_list = str.split('[\n').gather([1], false); const tokenized = no_open_list.split('},'); - const parse_result = tokenized._col.getJSONObject('.' + columns[ix]); + const parse_result = tokenized.getJSONObject('.' + columns[ix]); arr[col] = Series.new(parse_result).cast(dtypes[ix]); }); const result = new DataFrame(arr); @@ -55,7 +55,7 @@ function json_aoa_to_dataframe(str, dtypes) { const tokenized = no_open_list.split('],'); dtypes.forEach((_, ix) => { const get_ix = `[${ix}]`; - const parse_result = tokenized._col.getJSONObject(get_ix); + const parse_result = tokenized.getJSONObject(get_ix); const string_array = Series.new(parse_result); arr[ix] = string_array.cast(dtypes[ix]); }); @@ -101,9 +101,9 @@ module.exports = { const edges = json_aos_to_dataframe( tedges, ['key', 'source', 'target'], [new Utf8String, new Int32, new Int32]); let optionsArr = {}; - optionsArr['type'] = Series.new(toptions._col.getJSONObject('.type')); - optionsArr['multi'] = Series.new(toptions._col.getJSONObject('.multi')); - optionsArr['allowSelfLoops'] = Series.new(toptions._col.getJSONObject('.allowSelfLoops')); + optionsArr['type'] = Series.new(toptions.getJSONObject('.type')); + optionsArr['multi'] = Series.new(toptions.getJSONObject('.multi')); + optionsArr['allowSelfLoops'] = Series.new(toptions.getJSONObject('.allowSelfLoops')); const options = new DataFrame(optionsArr); return {nodes: nodes, edges: edges, options: options}; }, From 5496fee0aaa07b21f65732930b95c8bfbc42e40f Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 24 Jun 2022 13:03:08 -0500 Subject: [PATCH 63/68] Found one more ._col --- modules/demo/api-server/routes/graphology/index.js | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/modules/demo/api-server/routes/graphology/index.js b/modules/demo/api-server/routes/graphology/index.js index fcad123a2..df3c90580 100644 --- a/modules/demo/api-server/routes/graphology/index.js +++ b/modules/demo/api-server/routes/graphology/index.js @@ -303,8 +303,7 @@ module.exports = async function(fastify, opts) { } else { // tile x, y, size, color let tiled = Series.sequence({type: new Float32, init: 0.0, size: (6 * edges.numRows)}); - let base_offset = - Series.sequence({type: new Int32, init: 0.0, size: edges.numRows})._col.mul(3); + let base_offset = Series.sequence({type: new Int32, init: 0.0, size: edges.numRows}).mul(3); // // Duplicatin the sigma.j createNormalizationFunction here because there's no other way // to let the Graph object compute it. From 200255ec63eca45760b3f8095601f9a7dc146423 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 24 Jun 2022 13:10:17 -0500 Subject: [PATCH 64/68] Autocomplete gives me a weird import. --- modules/demo/api-server/routes/graphology/index.js | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/modules/demo/api-server/routes/graphology/index.js b/modules/demo/api-server/routes/graphology/index.js index df3c90580..8c9549e0d 100644 --- a/modules/demo/api-server/routes/graphology/index.js +++ b/modules/demo/api-server/routes/graphology/index.js @@ -22,10 +22,9 @@ const Stat = promisify(Fs.stat) const fastifyCors = require('@fastify/cors'); const fastify = require('fastify'); -const arrowPlugin = require('fastify-arrow'); -const gpu_cache = require('../../util/gpu_cache.js'); -const {collapseTextChangeRangesAcrossMultipleVersions} = require('typescript'); -const root_schema = require('../../util/schema.js'); +const arrowPlugin = require('fastify-arrow'); +const gpu_cache = require('../../util/gpu_cache.js'); +const root_schema = require('../../util/schema.js'); module.exports = async function(fastify, opts) { fastify.register(arrowPlugin); From 3182da0aad2a0f5c0a1e0887cc63c9784b9a754f Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 24 Jun 2022 13:26:08 -0500 Subject: [PATCH 65/68] Update modules/demo/api-server/util/gpu_cache.js Co-authored-by: Paul Taylor --- modules/demo/api-server/util/gpu_cache.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/demo/api-server/util/gpu_cache.js b/modules/demo/api-server/util/gpu_cache.js index e9e10e50a..f8cd18349 100644 --- a/modules/demo/api-server/util/gpu_cache.js +++ b/modules/demo/api-server/util/gpu_cache.js @@ -85,7 +85,7 @@ module.exports = { async readLargeGraphDemo(path) { console.log('readLargeGraphDemo'); - const dataset = StringSeries.readText(path, ''); + const dataset = Series.readText(path, ''); let split = dataset.split('"options":'); if (split.length <= 1) { throw 'Bad readLargeGraphDemo format: options not found.'; }; const toptions = split.gather([1], false); From 8bdc6453245de71cf95d7827a3644f687b0a4a44 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 24 Jun 2022 13:26:16 -0500 Subject: [PATCH 66/68] Update modules/demo/api-server/util/gpu_cache.js Co-authored-by: Paul Taylor --- modules/demo/api-server/util/gpu_cache.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/demo/api-server/util/gpu_cache.js b/modules/demo/api-server/util/gpu_cache.js index f8cd18349..cca4bc57f 100644 --- a/modules/demo/api-server/util/gpu_cache.js +++ b/modules/demo/api-server/util/gpu_cache.js @@ -110,7 +110,7 @@ module.exports = { async readGraphology(path) { console.log('readGraphology'); - const dataset = StringSeries.readText(path, ''); + const dataset = Series.readText(path, ''); if (dataset.length == 0) { throw 'File does not exist or is empty.' } let split = dataset.split('"tags":'); if (split.length <= 1) { throw 'Bad graphology format: tags not found.'; } From 4b42296b0ef0f64ca1d3fc79b4bea9e54fb3e23b Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 24 Jun 2022 13:26:22 -0500 Subject: [PATCH 67/68] Update modules/demo/api-server/routes/graphology/index.js Co-authored-by: Paul Taylor --- modules/demo/api-server/routes/graphology/index.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/demo/api-server/routes/graphology/index.js b/modules/demo/api-server/routes/graphology/index.js index 8c9549e0d..a918b496b 100644 --- a/modules/demo/api-server/routes/graphology/index.js +++ b/modules/demo/api-server/routes/graphology/index.js @@ -13,7 +13,7 @@ // limitations under the License. const Fs = require('fs'); -const {Utf8String, Int32, Uint32, Float32, DataFrame, StringSeries, Series, Float64} = +const {Utf8String, Int32, Uint32, Float32, DataFrame, Series, Float64} = require('@rapidsai/cudf'); const {RecordBatchStreamWriter, Field, Vector, List, Table} = require('apache-arrow'); const Path = require('path'); From a259809a5b20ad4e8a489464dfd0eb6e9dd67e89 Mon Sep 17 00:00:00 2001 From: "H. Thomson Comer" Date: Fri, 24 Jun 2022 13:26:28 -0500 Subject: [PATCH 68/68] Update modules/demo/api-server/util/gpu_cache.js Co-authored-by: Paul Taylor --- modules/demo/api-server/util/gpu_cache.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/demo/api-server/util/gpu_cache.js b/modules/demo/api-server/util/gpu_cache.js index cca4bc57f..9d14be46f 100644 --- a/modules/demo/api-server/util/gpu_cache.js +++ b/modules/demo/api-server/util/gpu_cache.js @@ -12,7 +12,7 @@ // See the License for the specific language governing permissions and // limitations under the License. -const {Bool8, Utf8String, Int32, Int64, DataFrame, StringSeries, Series, Float32, Float64} = +const {Bool8, Utf8String, Int32, Int64, DataFrame, Series, Float32, Float64} = require('@rapidsai/cudf'); let timeout = -1;