diff --git a/.dockerignore b/.dockerignore
deleted file mode 100644
index 26a3e77ec..000000000
--- a/.dockerignore
+++ /dev/null
@@ -1,6 +0,0 @@
-*
-!docker
-#cmake-build-*
-#build
-#install
-!temp/gds
diff --git a/Dockerfile-cuda110 b/Dockerfile-cuda110
deleted file mode 100644
index 725ddf2b6..000000000
--- a/Dockerfile-cuda110
+++ /dev/null
@@ -1,39 +0,0 @@
-#
-# Copyright (c) 2020, NVIDIA CORPORATION.
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#      http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-
-FROM dockcross/manylinux2014-x64:20230215-2dd9a1c
-
-ENV DEFAULT_DOCKCROSS_IMAGE gigony/manylinux2014-x64:cuda110
-ENV PATH=/usr/local/cuda/bin/:$PATH
-
-ENV LD_LIBRARY_PATH=/usr/local/cuda/lib64/:/usr/local/cuda/nvvm/lib64:${LD_LIBRARY_PATH}
-
-RUN curl -LO https://developer.download.nvidia.com/compute/cuda/11.0.3/local_installers/cuda_11.0.3_450.51.06_linux.run && \
-    chmod +x cuda_*.run && \
-    ./cuda_*.run --silent --no-opengl-libs --toolkit --override && \
-    rm -f cuda_*.run;
-
-RUN curl -LO https://developer.download.nvidia.com/compute/cuda/repos/rhel7/x86_64/libnvjpeg2k0-0.0.1.17-1.x86_64.rpm && \
-    curl -LO https://developer.download.nvidia.com/compute/cuda/repos/rhel7/x86_64/libnvjpeg2k-devel-0.0.1.17-1.x86_64.rpm && \
-    rpm -i libnvjpeg2k*.rpm
-
-# TODO: Currently we don't install dependencies from libtiff here.
-RUN yum install -y openslide-python openslide-devel python-devel python3-devel
-
-# Copy stub libcuda file
-RUN cp /usr/local/cuda-11.0/targets/x86_64-linux/lib/stubs/libcuda.so /usr/lib64/libcuda.so.1
-
-RUN cp -P /usr/include/nvjpeg2k* /usr/local/cuda/include/ && \
-    cp -P /usr/lib64/libnvjpeg2k* /usr/local/cuda/lib64/
diff --git a/Dockerfile-cuda111 b/Dockerfile-cuda111
deleted file mode 100644
index 428c154d6..000000000
--- a/Dockerfile-cuda111
+++ /dev/null
@@ -1,39 +0,0 @@
-#
-# Copyright (c) 2020, NVIDIA CORPORATION.
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#      http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-
-FROM dockcross/manylinux2014-x64:20230215-2dd9a1c
-
-ENV DEFAULT_DOCKCROSS_IMAGE gigony/manylinux2014-x64:cuda111
-ENV PATH=/usr/local/cuda/bin/:$PATH
-
-ENV LD_LIBRARY_PATH=/usr/local/cuda/lib64/:/usr/local/cuda/nvvm/lib64:${LD_LIBRARY_PATH}
-
-RUN curl -LO https://developer.download.nvidia.com/compute/cuda/11.1.0/local_installers/cuda_11.1.0_455.23.05_linux.run && \
-    chmod +x cuda_*.run && \
-    ./cuda_*.run --silent --no-opengl-libs --toolkit --override && \
-    rm -f cuda_*.run;
-
-RUN curl -LO https://developer.download.nvidia.com/compute/cuda/repos/rhel7/x86_64/libnvjpeg2k0-0.0.1.17-1.x86_64.rpm && \
-    curl -LO https://developer.download.nvidia.com/compute/cuda/repos/rhel7/x86_64/libnvjpeg2k-devel-0.0.1.17-1.x86_64.rpm && \
-    rpm -i libnvjpeg2k*.rpm
-
-# TODO: Currently we don't install dependencies from libtiff here.
-RUN yum install -y openslide-python openslide-devel python-devel python3-devel
-
-# Copy stub libcuda file
-RUN cp /usr/local/cuda-11.1/targets/x86_64-linux/lib/stubs/libcuda.so /usr/lib64/libcuda.so.1
-
-RUN cp -P /usr/include/nvjpeg2k* /usr/local/cuda/include/ && \
-    cp -P /usr/lib64/libnvjpeg2k* /usr/local/cuda/lib64/
diff --git a/LICENSE-3rdparty.md b/LICENSE-3rdparty.md
index 4c2a045b1..984d0e952 100644
--- a/LICENSE-3rdparty.md
+++ b/LICENSE-3rdparty.md
@@ -287,9 +287,3 @@ PBA+
   - https://github.com/orzzzjq/Parallel-Banding-Algorithm-plus/blob/master/LICENSE
 - Copyright: School of Computing, National University of Singapore
 - Usage: PBA+ is used to implement the Euclidean distance transform.
-
-dockcross
-- License: MIT License
-  - https://github.com/dockcross/dockcross/blob/master/LICENSE
-- Copyright: Steeve Morin, Rob Burns, Matthew McCormick, Jean-Christophe-Fillion-Robin, Bensuperpc
-- Usage: Building Python wheels for Linux
diff --git a/build.sh b/build.sh
deleted file mode 100755
index 2f96597d6..000000000
--- a/build.sh
+++ /dev/null
@@ -1,245 +0,0 @@
-#!/bin/bash
-#
-# Copyright (c) 2020, NVIDIA CORPORATION.
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#      http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-
-if [ "$0" != "/bin/bash" ]; then
-    SCRIPT_DIR=$(dirname "$(readlink -f "$0")")
-fi
-
-################################################################################
-# Utility functions
-################################################################################
-
-c_str() {
-    local old_color=39
-    local old_attr=0
-    local color=39
-    local attr=0
-    local text=""
-    local no_change=0
-    for i in "$@"; do
-        case "$i" in
-            r|R)
-                color=31
-                ;;
-            g|G)
-                color=32
-                ;;
-            y|Y)
-                color=33
-                ;;
-            b|B)
-                color=34
-                ;;
-            p|P)
-                color=35
-                ;;
-            c|C)
-                color=36
-                ;;
-            w|W)
-                color=37
-                ;;
-
-            z|Z)
-                color=0
-                ;;
-        esac
-        case "$i" in
-            l|L|R|G|Y|B|P|C|W)
-                attr=1
-                ;;
-            n|N|r|g|y|b|p|c|w)
-                attr=0
-                ;;
-            z|Z)
-                attr=0
-                ;;
-            *)
-                text="${text}$i"
-        esac
-        if [ ${old_color} -ne ${color} ] || [ ${old_attr} -ne ${attr} ]; then
-            text="${text}\033[${attr};${color}m"
-            old_color=$color
-            old_attr=$attr
-        fi
-    done
-    /bin/echo -en "$text"
-}
-
-c_echo() {
-    local old_opt="$(shopt -op xtrace)" # save old xtrace option
-    set +x # unset xtrace
-    local text="$(c_str "$@")"
-    /bin/echo -e "$text\033[0m"
-    eval "${old_opt}" # restore old xtrace option
-}
-
-
-echo_err() {
-    >&2 echo "$@"
-}
-
-c_echo_err() {
-    >&2 c_echo "$@"
-}
-
-printf_err() {
-    >&2 printf "$@"
-}
-
-get_item_ranges() {
-  local indexes="$1"
-  local list="$2"
-  echo -n "$(echo "${list}" | xargs | cut -d " " -f "${indexes}")"
-  return $?
-}
-
-get_unused_ports() {
-    local num_of_ports=${1:-1}
-    comm -23 \
-    <(seq 49152 61000 | sort) \
-    <(ss -tan | awk '{print $4}' | while read line; do echo ${line##*\:}; done | grep '[0-9]\{1,5\}' | sort -u) \
-    | shuf | tail -n ${num_of_ports} # use tail instead head to avoid broken pipe in VSCode terminal
-}
-
-newline() {
-    echo
-}
-
-info() {
-    c_echo W "$(date -u '+%Y-%m-%d %H:%M:%S') [INFO] " Z "$@"
-}
-
-error() {
-    echo R "$(date -u '+%Y-%m-%d %H:%M:%S') [ERROR] " Z "$@"
-}
-
-fatal() {
-    echo R "$(date -u '+%Y-%m-%d %H:%M:%S') [FATAL] " Z "$@"
-    echo
-    if [ -n "${SCRIPT_DIR}" ]; then
-        exit 1
-    fi
-}
-
-run_command() {
-  local status=0
-  local cmd="$@"
-
-  c_echo B "$(date -u '+%Y-%m-%d %H:%M:%S') \$ " G "${cmd}"
-
-  [ "$(echo -n "$@")" = "" ] && return 1  # return 1 if there is no command available
-
-  eval "$@"
-  status=$?
-
-  if [ -n "${cmd_result}" ]; then
-    echo "${cmd_result}"
-  fi
-  unset IFS
-
-  return $status
-}
-
-retry() {
-  local retries=$1
-  shift
-
-  local count=0
-  until run_command "$@"; do
-    exit=$?
-    wait=$((2 ** $count))
-    count=$(($count + 1))
-    if [ $count -lt $retries ]; then
-      info "Retry $count/$retries. Exit code=$exit, Retrying in $wait seconds..."
-      sleep $wait
-    else
-      fatal "Retry $count/$retries. Exit code=$exit, no more retries left."
-      return 1
-    fi
-  done
-  return 0
-}
-
-parse_args() {
-    local OPTIND
-    while getopts 'yh' option;
-    do
-        case "${option}" in
-            # a)
-            #     VALUE=${OPTARG}
-            #     ;;
-            y)
-                ALWAYS_YES=true;
-                ;;
-            h)
-                print_usage
-                exit 1
-                ;;
-        esac
-    done
-    shift $((OPTIND-1))
-
-    CMD="$1"
-    shift
-
-    ARGS=("$@")
-}
-
-print_usage() {
-    set +x
-    echo_err
-    echo_err "USAGE: $0 [command] [arguments]..."
-    echo_err ""
-    echo_err "Global Arguments"
-    echo_err
-    echo_err "Command List"
-
-    echo_err
-    echo_err "Examples"
-}
-
-init_script() {
-    TOP=$(git rev-parse --show-toplevel || pwd)
-}
-
-main() {
-    parse_args "$@"
-    local file_type
-    case "$CMD" in
-        list|ls)
-            # list_testdata "${ARGS[@]}"
-            ;;
-        ''|main)
-            print_usage
-            ;;
-        *)
-            if type ${CMD} > /dev/null 2>&1; then
-                init_script
-                run_command "$CMD" "${ARGS[@]}"
-            else
-                print_usage
-                exit 1
-            fi
-            ;;
-    esac
-}
-
-if [ -n "${SCRIPT_DIR}" ]; then
-    main "$@"
-fi
-
-# CLARA_VERSION=0.7.1-2008.4 ./serverctl get_latest_version_of recipes clara_bootstrap 2> /dev/null
diff --git a/build_docker.sh b/build_docker.sh
deleted file mode 100755
index f7845c594..000000000
--- a/build_docker.sh
+++ /dev/null
@@ -1,98 +0,0 @@
-#!/bin/bash
-#
-# Copyright (c) 2020, NVIDIA CORPORATION.
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#      http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-
-set -eu
-
-CMAKE_CMD=cmake
-CMAKE_BUILD_TYPE=Release
-NUM_THREADS=$(nproc)
-
-SRC_ROOT=/work
-BUILD_ROOT=/work/temp
-
-CUCIM_SDK_PATH=${BUILD_ROOT}/libcucim
-
-# Build libcucim
-${CMAKE_CMD} -S ${SRC_ROOT} -B ${BUILD_ROOT}/libcucim \
-    -DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE} \
-    -DCMAKE_INSTALL_PREFIX=${CUCIM_SDK_PATH}
-${CMAKE_CMD} --build ${BUILD_ROOT}/libcucim --target cucim -- -j ${NUM_THREADS}
-${CMAKE_CMD} --build ${BUILD_ROOT}/libcucim --target install -- -j ${NUM_THREADS}
-
-# Build cuslide plugin
-${CMAKE_CMD} -S ${SRC_ROOT}/cpp/plugins/cucim.kit.cuslide -B ${BUILD_ROOT}/cuslide \
-    -DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE} \
-    -DCMAKE_INSTALL_PREFIX=${BUILD_ROOT}/cuslide/install \
-    -DCUCIM_SDK_PATH=${CUCIM_SDK_PATH}
-${CMAKE_CMD} --build ${BUILD_ROOT}/cuslide --target cucim.kit.cuslide -- -j ${NUM_THREADS}
-${CMAKE_CMD} --build ${BUILD_ROOT}/cuslide --target install -- -j ${NUM_THREADS}
-
-# Build Python bind
-
-for PYBIN in /opt/python/*/bin; do
-    ${CMAKE_CMD} -S ${SRC_ROOT}/python -B ${BUILD_ROOT}/cucim \
-        -DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE} \
-        -DCMAKE_INSTALL_PREFIX=${BUILD_ROOT}/cucim/install \
-        -DCUCIM_SDK_PATH=${CUCIM_SDK_PATH} \
-        -DPYTHON_EXECUTABLE=${PYBIN}/python
-    ${CMAKE_CMD} --build ${BUILD_ROOT}/cucim --target cucim -- -j ${NUM_THREADS}
-    ${CMAKE_CMD} --build ${BUILD_ROOT}/cucim --target install -- -j ${NUM_THREADS}
-done
-
-# Copy .so files to pybind's build folder
-# (it uses -P to copy symbolic links as they are)
-cp -P ${BUILD_ROOT}/libcucim/install/lib/lib* ${BUILD_ROOT}/cucim/lib/cucim/
-cp -P ${BUILD_ROOT}/cuslide/install/lib/cucim* ${BUILD_ROOT}/cucim/lib/cucim/
-
-# Copy .so files from pybind's build folder to cucim Python source folder
-cp -P ${BUILD_ROOT}/cucim/lib/cucim/* ${SRC_ROOT}/python/cucim/src/cucim/clara/
-
-
-
-
-set -e -u -x
-
-function repair_wheel {
-    wheel="$1"
-    if ! auditwheel show "$wheel"; then
-        echo "Skipping non-platform wheel $wheel"
-    else
-        auditwheel repair --plat "$PLAT" -w wheelhouse/ "$wheel"
-    fi
-}
-
-PLAT=manylinux2014_x86_64
-
-cd /work/python/cucim
-# Compile wheels (one python binary is enough)
-for PYBIN in /opt/python/cp36-cp36m/bin; do # /opt/python/*/bin
-    "${PYBIN}/python" setup.py bdist_wheel -p $PLAT
-done
-
-mkdir -p /work/python/cucim/wheelhouse
-
-# Bundle external shared libraries into the wheels
-for whl in dist/*.whl; do
-    repair_wheel "$whl"
-done
-
-# # Install packages and test
-# for PYBIN in /opt/python/*/bin/; do
-#     "${PYBIN}/pip" install python-manylinux-demo --no-index -f /io/wheelhouse
-#     (cd "$HOME"; "${PYBIN}/nosetests" pymanylinuxdemo)
-# done
-
-# python setup.py bdist_wheel -p manylinux2014-x86_64
diff --git a/dockcross-manylinux2014-x64 b/dockcross-manylinux2014-x64
deleted file mode 100755
index e6edf726e..000000000
--- a/dockcross-manylinux2014-x64
+++ /dev/null
@@ -1,270 +0,0 @@
-#!/usr/bin/env bash
-#
-# Copyright (c) 2020, NVIDIA CORPORATION.
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#      http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-
-DEFAULT_DOCKCROSS_IMAGE=gigony/manylinux2014-x64:cuda110
-
-#------------------------------------------------------------------------------
-# Helpers
-#
-err() {
-    echo -e >&2 ERROR: $@\\n
-}
-
-die() {
-    err $@
-    exit 1
-}
-
-has() {
-    # eg. has command update
-    local kind=$1
-    local name=$2
-
-    type -t $kind:$name | grep -q function
-}
-
-#------------------------------------------------------------------------------
-# Command handlers
-#
-command:update-image() {
-    docker pull $FINAL_IMAGE
-}
-
-help:update-image() {
-    echo Pull the latest $FINAL_IMAGE .
-}
-
-command:update-script() {
-    if cmp -s <( docker run --rm $FINAL_IMAGE ) $0; then
-        echo $0 is up to date
-    else
-        echo -n Updating $0 '... '
-        docker run --rm $FINAL_IMAGE > $0 && echo ok
-    fi
-}
-
-help:update-image() {
-    echo Update $0 from $FINAL_IMAGE .
-}
-
-command:update() {
-    command:update-image
-    command:update-script
-}
-
-help:update() {
-    echo Pull the latest $FINAL_IMAGE, and then update $0 from that.
-}
-
-command:help() {
-    if [[ $# != 0 ]]; then
-        if ! has command $1; then
-            err \"$1\" is not an dockcross command
-            command:help
-        elif ! has help $1; then
-            err No help found for \"$1\"
-        else
-            help:$1
-        fi
-    else
-        cat >&2 <<ENDHELP
-Usage: dockcross [options] [--] command [args]
-
-By default, run the given *command* in an dockcross Docker container.
-
-The *options* can be one of:
-
-    --args|-a           Extra args to the *docker run* command
-    --image|-i          Docker cross-compiler image to use
-    --config|-c         Bash script to source before running this script
-
-
-Additionally, there are special update commands:
-
-    update-image
-    update-script
-    update
-
-For update command help use: $0 help <command>
-ENDHELP
-        exit 1
-    fi
-}
-
-#------------------------------------------------------------------------------
-# Option processing
-#
-special_update_command=''
-while [[ $# != 0 ]]; do
-    case $1 in
-
-        --)
-            shift
-            break
-            ;;
-
-        --args|-a)
-            ARG_ARGS="$2"
-            shift 2
-            ;;
-
-        --config|-c)
-            ARG_CONFIG="$2"
-            shift 2
-            ;;
-
-        --image|-i)
-            ARG_IMAGE="$2"
-            shift 2
-            ;;
-        update|update-image|update-script)
-            special_update_command=$1
-            break
-            ;;
-        -*)
-            err Unknown option \"$1\"
-            command:help
-            exit
-            ;;
-
-        *)
-            break
-            ;;
-
-    esac
-done
-
-# The precedence for options is:
-# 1. command-line arguments
-# 2. environment variables
-# 3. defaults
-
-# Source the config file if it exists
-DEFAULT_DOCKCROSS_CONFIG=~/.dockcross
-FINAL_CONFIG=${ARG_CONFIG-${DOCKCROSS_CONFIG-$DEFAULT_DOCKCROSS_CONFIG}}
-
-[[ -f "$FINAL_CONFIG" ]] && source "$FINAL_CONFIG"
-
-# Set the docker image
-FINAL_IMAGE=${ARG_IMAGE-${DOCKCROSS_IMAGE-$DEFAULT_DOCKCROSS_IMAGE}}
-
-# Handle special update command
-if [ "$special_update_command" != "" ]; then
-    case $special_update_command in
-
-        update)
-            command:update
-            exit $?
-            ;;
-
-        update-image)
-            command:update-image
-            exit $?
-            ;;
-
-        update-script)
-            command:update-script
-            exit $?
-            ;;
-
-    esac
-fi
-
-# Set the docker run extra args (if any)
-FINAL_ARGS=${ARG_ARGS-${DOCKCROSS_ARGS}}
-
-# Bash on Ubuntu on Windows
-UBUNTU_ON_WINDOWS=$([ -e /proc/version ] && grep -l Microsoft /proc/version || echo "")
-# MSYS, Git Bash, etc.
-MSYS=$([ -e /proc/version ] && grep -l MINGW /proc/version || echo "")
-
-if [ -z "$UBUNTU_ON_WINDOWS" -a -z "$MSYS" ]; then
-    USER_IDS=(-e BUILDER_UID="$( id -u )" -e BUILDER_GID="$( id -g )" -e BUILDER_USER="$( id -un )" -e BUILDER_GROUP="$( id -gn )")
-fi
-
-# Change the PWD when working in Docker on Windows
-if [ -n "$UBUNTU_ON_WINDOWS" ]; then
-    WSL_ROOT="/mnt/"
-    CFG_FILE=/etc/wsl.conf
-	if [ -f "$CFG_FILE" ]; then
-		CFG_CONTENT=$(cat $CFG_FILE | sed -r '/[^=]+=[^=]+/!d' | sed -r 's/\s+=\s/=/g')
-		eval "$CFG_CONTENT"
-		if [ -n "$root" ]; then
-			WSL_ROOT=$root
-		fi
-	fi
-    HOST_PWD=`pwd -P`
-    HOST_PWD=${HOST_PWD/$WSL_ROOT//}
-elif [ -n "$MSYS" ]; then
-    HOST_PWD=$PWD
-    HOST_PWD=${HOST_PWD/\//}
-    HOST_PWD=${HOST_PWD/\//:\/}
-else
-    HOST_PWD=$PWD
-    [ -L $HOST_PWD ] && HOST_PWD=$(readlink $HOST_PWD)
-fi
-
-# Mount Additional Volumes
-if [ -z "$SSH_DIR" ]; then
-    SSH_DIR="$HOME/.ssh"
-fi
-
-HOST_VOLUMES=
-if [ -e "$SSH_DIR" -a -z "$MSYS" ]; then
-    HOST_VOLUMES+="-v $SSH_DIR:/home/$(id -un)/.ssh"
-fi
-
-#------------------------------------------------------------------------------
-# Now, finally, run the command in a container
-#
-TTY_ARGS=
-tty -s && [ -z "$MSYS" ] && TTY_ARGS=-ti
-CONTAINER_NAME=dockcross_$RANDOM
-docker run --runtime nvidia $TTY_ARGS --name $CONTAINER_NAME \
-    -v "$HOST_PWD":/work \
-    $HOST_VOLUMES \
-    "${USER_IDS[@]}" \
-    $FINAL_ARGS \
-    $FINAL_IMAGE "$@"
-run_exit_code=$?
-
-# Attempt to delete container
-rm_output=$(docker rm -f $CONTAINER_NAME 2>&1)
-rm_exit_code=$?
-if [[ $rm_exit_code != 0 ]]; then
-  if [[ "$CIRCLECI" == "true" ]] && [[ $rm_output == *"Driver btrfs failed to remove"* ]]; then
-    : # Ignore error because of https://circleci.com/docs/docker-btrfs-error/
-  else
-    echo "$rm_output"
-    exit $rm_exit_code
-  fi
-fi
-
-exit $run_exit_code
-
-################################################################################
-#
-# This image is not intended to be run manually.
-#
-# To create a dockcross helper script for the
-# gigony/manylinux2014-x64:cuda110 image, run:
-#
-# docker run --rm gigony/manylinux2014-x64:cuda110 > gigony-manylinux2014-x64-cuda111
-# chmod +x gigony-manylinux2014-x64-cuda111
-#
-# You may then wish to move the dockcross script to your PATH.
-#
-################################################################################
diff --git a/docker/Dockerfile-claratrain b/docker/Dockerfile-claratrain
deleted file mode 100644
index 4526ebbdd..000000000
--- a/docker/Dockerfile-claratrain
+++ /dev/null
@@ -1,28 +0,0 @@
-#
-# Copyright (c) 2020, NVIDIA CORPORATION.
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#      http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-FROM nvcr.io/nvidian/dlmed/clara-train-sdk:v3.1-ga-qa-5
-
-RUN apt-get update \
-    && apt-get install --yes --fix-missing --no-install-recommends \
-        libopenslide0 \
-    && rm -rf /var/lib/apt/lists/*
-
-COPY ./docker/requirements-claratrain.txt ./
-COPY ./*.whl ./
-
-# Use `python -m pip` to avoid using an old script wrapper.
-RUN python -m pip install --no-cache-dir --upgrade pip setuptools wheel \
-    && python -m pip install --no-cache-dir -r requirements-claratrain.txt \
-    && python -m pip install cu*.whl
diff --git a/docker/Dockerfile-cmake b/docker/Dockerfile-cmake
deleted file mode 100644
index edf32abca..000000000
--- a/docker/Dockerfile-cmake
+++ /dev/null
@@ -1,76 +0,0 @@
-#
-# Copyright (c) 2020-2021, NVIDIA CORPORATION.
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#      http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-FROM nvidia/cuda:11.0-devel-ubuntu18.04
-
-ENV LC_ALL=C.UTF-8
-ENV LANG=C.UTF-8
-ENV DEBIAN_FRONTEND=noninteractive
-
-# Download and install Python3 PIP.
-RUN apt-get update --yes \
-    && apt-get upgrade --yes \
-    && apt-get install --yes --fix-missing --no-install-recommends \
-        software-properties-common \
-        ca-certificates \
-        python3-minimal \
-        python3-pip \
-    && add-apt-repository ppa:ubuntu-toolchain-r/test \
-    && rm -rf /var/lib/apt/lists/*
-
-RUN python3 --version
-
-# Set additional environment values that make usage more pleasant.
-ENV TERM=xterm-256color
-
-# Make /usr/bin/python point to the ${VERSION_PYTHON3} version of python
-RUN VERSION_PYTHON3=$(python3 --version | cut -c8-) && VERSION_PYTHON3=${VERSION_PYTHON3%.*} \
-    && rm -f /usr/bin/python \
-    && rm -f /usr/bin/python`echo ${VERSION_PYTHON3} | cut -c1-1` \
-    && ln -s /usr/bin/python${VERSION_PYTHON3} /usr/bin/python \
-    && ln -s /usr/bin/python${VERSION_PYTHON3} /usr/bin/python`echo ${VERSION_PYTHON3} | cut -c1-1`
-
-# Make /usr/bin/pip point to the ${VERSION_PIP3} version of python
-RUN rm -f /usr/bin/pip \
-    && ln -s /usr/bin/pip3 /usr/bin/pip
-
-RUN apt-get update \
-    && apt-get install -y --no-install-recommends \
-        python3-dev \
-        gcc-9 \
-        g++-9 \
-        libopenslide-dev \
-        wget \
-        git \
-        curl \
-    && apt-get autoremove -y \
-    && rm -rf /var/lib/apt/lists/* \
-    && rm -rf /var/cache/apt/archives/partial/*
-
-WORKDIR /workspace
-ENV HOME=/workspace
-
-# Use `python -m pip` to avoid using an old script wrapper.
-RUN python -m pip install --no-cache-dir --upgrade pip setuptools wheel \
-    && python -m pip install cmake
-
-# Setup gcc-9
-RUN update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-7 10 \
-    && update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-9 20 \
-    && update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-7 10 \
-    && update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-9 20
-
-ENV LD_LIBRARY_PATH=/usr/local/cuda/lib64:/usr/local/cuda/nvvm/lib64
-
-ENTRYPOINT ["/bin/bash"]
diff --git a/docker/Dockerfile-jupyter b/docker/Dockerfile-jupyter
deleted file mode 100644
index cc6a2403b..000000000
--- a/docker/Dockerfile-jupyter
+++ /dev/null
@@ -1,91 +0,0 @@
-#
-# Copyright (c) 2020-2021, NVIDIA CORPORATION.
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#      http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-FROM nvidia/cuda:11.0-devel-ubuntu18.04
-
-ARG NODE_VERSION=v14.13.1
-ARG NODE_DISTRO=linux-x64
-
-ENV LC_ALL=C.UTF-8
-ENV LANG=C.UTF-8
-ENV DEBIAN_FRONTEND=noninteractive
-
-# Download and install Python3 PIP.
-RUN apt-get update --yes \
-    && apt-get upgrade --yes \
-    && apt-get install --yes --fix-missing --no-install-recommends \
-        ca-certificates \
-        python3-minimal \
-        python3-pip \
-    && rm -rf /var/lib/apt/lists/*
-
-RUN python3 --version
-
-# Set additional environment values that make usage more pleasant.
-ENV TERM=xterm-256color
-
-# Make /usr/bin/python point to the ${VERSION_PYTHON3} version of python
-RUN VERSION_PYTHON3=$(python3 --version | cut -c8-) && VERSION_PYTHON3=${VERSION_PYTHON3%.*} \
-    && rm -f /usr/bin/python \
-    && rm -f /usr/bin/python`echo ${VERSION_PYTHON3} | cut -c1-1` \
-    && ln -s /usr/bin/python${VERSION_PYTHON3} /usr/bin/python \
-    && ln -s /usr/bin/python${VERSION_PYTHON3} /usr/bin/python`echo ${VERSION_PYTHON3} | cut -c1-1`
-
-# Make /usr/bin/pip point to the ${VERSION_PIP3} version of python
-RUN rm -f /usr/bin/pip \
-    && ln -s /usr/bin/pip3 /usr/bin/pip
-
-# libgl1 is needed for opencv at `cucim convert` CLI command.
-RUN apt-get update \
-    && apt-get install -y --no-install-recommends \
-        python3-dev \
-        gcc \
-        g++ \
-        libopenslide-dev \
-        libsm6 \
-        libxext6 \
-        libxrender-dev \
-        libglib2.0-0 \
-        libgl1 \
-        wget \
-        git \
-        xz-utils \
-        curl \
-    && apt-get autoremove -y \
-    && rm -rf /var/lib/apt/lists/* \
-    && rm -rf /var/cache/apt/archives/partial/*
-
-WORKDIR /workspace
-ENV HOME=/workspace
-
-# Install nodejs
-RUN mkdir -p /usr/local/lib/nodejs \
-    && wget https://nodejs.org/dist/$NODE_VERSION/node-${NODE_VERSION}-${NODE_DISTRO}.tar.xz \
-    && tar -xJvf node-${NODE_VERSION}-${NODE_DISTRO}.tar.xz -C /usr/local/lib/nodejs \
-    && rm node-${NODE_VERSION}-${NODE_DISTRO}.tar.xz
-ENV PATH=/usr/local/lib/nodejs/node-$NODE_VERSION-$NODE_DISTRO/bin:$PATH
-
-COPY ./docker/requirements-jupyter.txt ./
-
-# Use `python -m pip` to avoid using an old script wrapper.
-RUN python -m pip install --no-cache-dir --upgrade pip setuptools wheel \
-    && python -m pip install --no-cache-dir -r requirements-jupyter.txt
-
-# Install Jupyter Extensions
-RUN jupyter labextension install dask-labextension \
-    && jupyter serverextension enable dask_labextension
-
-ENV LD_LIBRARY_PATH=/usr/local/cuda/lib64:/usr/local/cuda/nvvm/lib64
-
-ENTRYPOINT ["/bin/bash"]
diff --git a/docker/Dockerfile-jupyter-dev b/docker/Dockerfile-jupyter-dev
deleted file mode 100644
index 5c7e7c2b1..000000000
--- a/docker/Dockerfile-jupyter-dev
+++ /dev/null
@@ -1,112 +0,0 @@
-#
-# Copyright (c) 2020-2021, NVIDIA CORPORATION.
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#      http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-FROM nvidia/cuda:11.0-devel-ubuntu18.04
-
-ARG NODE_VERSION=v14.13.1
-ARG NODE_DISTRO=linux-x64
-
-ENV LC_ALL=C.UTF-8
-ENV LANG=C.UTF-8
-ENV DEBIAN_FRONTEND=noninteractive
-
-RUN apt-get update \
-    && apt-get install --yes --fix-missing --no-install-recommends \
-        ca-certificates \
-    && rm -rf /var/lib/apt/lists/*
-
-# Download and install Python3 PIP.
-RUN apt-get update \
-    && apt-get install --yes --fix-missing --no-install-recommends \
-        python3-minimal \
-        python3-pip \
-    && rm -rf /var/lib/apt/lists/*
-
-RUN python3 --version
-
-# Set additional environment values that make usage more pleasant.
-ENV TERM=xterm-256color
-
-# Make /usr/bin/python point to the ${VERSION_PYTHON3} version of python
-RUN VERSION_PYTHON3=$(python3 --version | cut -c8-) && VERSION_PYTHON3=${VERSION_PYTHON3%.*} \
-    && rm -f /usr/bin/python \
-    && rm -f /usr/bin/python`echo ${VERSION_PYTHON3} | cut -c1-1` \
-    && ln -s /usr/bin/python${VERSION_PYTHON3} /usr/bin/python \
-    && ln -s /usr/bin/python${VERSION_PYTHON3} /usr/bin/python`echo ${VERSION_PYTHON3} | cut -c1-1`
-
-# Make /usr/bin/pip point to the ${VERSION_PIP3} version of python
-RUN rm -f /usr/bin/pip \
-    && ln -s /usr/bin/pip3 /usr/bin/pip
-
-# libgl1 is needed for opencv at `cucim convert` CLI command.
-RUN apt-get update \
-    && apt-get install -y --no-install-recommends \
-        python3-dev \
-        gcc \
-        g++ \
-        libopenslide-dev \
-        libsm6 \
-        libxext6 \
-        libxrender-dev \
-        libglib2.0-0 \
-        libgl1 \
-        wget \
-        git \
-        xz-utils \
-    && apt-get autoremove -y \
-    && rm -rf /var/lib/apt/lists/* \
-    && rm -rf /var/cache/apt/archives/partial/*
-
-WORKDIR /workspace
-ENV HOME=/workspace
-
-# Install nodejs
-RUN mkdir -p /usr/local/lib/nodejs \
-    && wget https://nodejs.org/dist/$NODE_VERSION/node-${NODE_VERSION}-${NODE_DISTRO}.tar.xz \
-    && tar -xJvf node-${NODE_VERSION}-${NODE_DISTRO}.tar.xz -C /usr/local/lib/nodejs \
-    && rm node-${NODE_VERSION}-${NODE_DISTRO}.tar.xz
-ENV PATH=/usr/local/lib/nodejs/node-$NODE_VERSION-$NODE_DISTRO/bin:$PATH
-
-COPY ./docker/requirements-jupyter-dev.txt ./
-
-# Use `python -m pip` to avoid using an old script wrapper.
-RUN python -m pip install --no-cache-dir --upgrade pip setuptools wheel \
-    && python -m pip install --no-cache-dir -r requirements-jupyter-dev.txt
-
-# Install Jupyter Extensions
-RUN jupyter labextension install dask-labextension \
-    && jupyter serverextension enable dask_labextension
-
-RUN apt-get update \
-    && apt-get install -y --no-install-recommends \
-        curl \
-#         build-essential \
-#         cmake \
-#         git \
-#         zlib1g-dev \
-#         libssl-dev \
-    && apt-get autoremove -y \
-    && rm -rf /var/lib/apt/lists/*
-
-# Download TRITON Client
-ARG TRITON_CLIENTS_URL=https://github.com/triton-inference-server/server/releases/download/v2.5.0/v2.5.0_ubuntu1804.clients.tar.gz
-RUN mkdir -p /opt/nvidia/triton-clients \
-    && curl -L ${TRITON_CLIENTS_URL} | tar xvz -C /opt/nvidia/triton-clients
-
-RUN pip install --no-cache-dir \
-        /opt/nvidia/triton-clients/python/*manylinux1_x86_64.whl
-
-ENV LD_LIBRARY_PATH=/usr/local/cuda/lib64:/usr/local/cuda/nvvm/lib64
-
-ENTRYPOINT ["/bin/bash"]
diff --git a/docker/Dockerfile-jupyter-gds b/docker/Dockerfile-jupyter-gds
deleted file mode 100644
index 1238c7265..000000000
--- a/docker/Dockerfile-jupyter-gds
+++ /dev/null
@@ -1,142 +0,0 @@
-#
-# Copyright (c) 2020-2021, NVIDIA CORPORATION.
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#      http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-ARG UBUNTU_VER=18.04
-FROM nvidia/cuda:11.0-devel-ubuntu${UBUNTU_VER}
-
-ARG UBUNTU_VER=18.04
-ARG NODE_VERSION=v14.13.1
-ARG NODE_DISTRO=linux-x64
-ENV UBUNTU_VER=${UBUNTU_VER}
-
-ENV LC_ALL=C.UTF-8
-ENV LANG=C.UTF-8
-ENV DEBIAN_FRONTEND=noninteractive
-
-# Download and install Python3 PIP.
-RUN apt-get update --yes \
-    && apt-get upgrade --yes \
-    && apt-get install --yes --fix-missing --no-install-recommends \
-        ca-certificates \
-        python3-minimal \
-        python3-pip \
-    && rm -rf /var/lib/apt/lists/*
-
-RUN python3 --version
-
-# Set additional environment values that make usage more pleasant.
-ENV TERM=xterm-256color
-
-# Make /usr/bin/python point to the ${VERSION_PYTHON3} version of python
-RUN VERSION_PYTHON3=$(python3 --version | cut -c8-) && VERSION_PYTHON3=${VERSION_PYTHON3%.*} \
-    && rm -f /usr/bin/python \
-    && rm -f /usr/bin/python`echo ${VERSION_PYTHON3} | cut -c1-1` \
-    && ln -s /usr/bin/python${VERSION_PYTHON3} /usr/bin/python \
-    && ln -s /usr/bin/python${VERSION_PYTHON3} /usr/bin/python`echo ${VERSION_PYTHON3} | cut -c1-1`
-
-# Make /usr/bin/pip point to the ${VERSION_PIP3} version of python
-RUN rm -f /usr/bin/pip \
-    && ln -s /usr/bin/pip3 /usr/bin/pip
-
-# libgl1 is needed for opencv at `cucim convert` CLI command.
-RUN apt-get update \
-    && apt-get install -y --no-install-recommends \
-        python3-dev \
-        gcc \
-        g++ \
-        libopenslide-dev \
-        libsm6 \
-        libxext6 \
-        libxrender-dev \
-        libglib2.0-0 \
-        libgl1 \
-        wget \
-        git \
-        xz-utils \
-        curl \
-    && apt-get autoremove -y \
-    && rm -rf /var/lib/apt/lists/* \
-    && rm -rf /var/cache/apt/archives/partial/*
-
-WORKDIR /workspace
-ENV HOME=/workspace
-
-# Install nodejs
-RUN mkdir -p /usr/local/lib/nodejs \
-    && wget https://nodejs.org/dist/$NODE_VERSION/node-${NODE_VERSION}-${NODE_DISTRO}.tar.xz \
-    && tar -xJvf node-${NODE_VERSION}-${NODE_DISTRO}.tar.xz -C /usr/local/lib/nodejs \
-    && rm node-${NODE_VERSION}-${NODE_DISTRO}.tar.xz
-ENV PATH=/usr/local/lib/nodejs/node-$NODE_VERSION-$NODE_DISTRO/bin:$PATH
-
-COPY ./docker/requirements-jupyter.txt ./
-
-# Use `python -m pip` to avoid using an old script wrapper.
-RUN python -m pip install --no-cache-dir --upgrade pip setuptools wheel \
-    && python -m pip install --no-cache-dir -r requirements-jupyter.txt
-
-# Install Jupyter Extensions
-RUN jupyter labextension install dask-labextension \
-    && jupyter serverextension enable dask_labextension
-
-# Supporting GDS
-
-ARG GDS_VER=0.9.0
-ARG MLNX_OFED_VER=5.1-2.5.8.0
-
-COPY ./temp/gds/tools/README /usr/local/cuda/gds/
-COPY ./temp/gds/samples/ /usr/local/cuda/gds/samples/
-COPY ./temp/gds/tools/ /usr/local/cuda/gds/tools/
-COPY ./temp/gds/lib64/cufile.h /usr/local/cuda/lib64/cufile.h
-COPY ./temp/gds/lib64/libcufile.so.${GDS_VER} /usr/local/cuda/lib64/libcufile.so.${GDS_VER}
-COPY ./temp/gds/lib64/libcufile_rdma.so.${GDS_VER} /usr/local/cuda/lib64/libcufile_rdma.so.${GDS_VER}
-
-# Somehow libcufile.so.0 and libcufile_rdma.so.0 are auto-generated during the copy
-    #&& ln -s libcufile.so.${GDS_VER} /usr/local/cuda/lib64/libcufile.so.0 \
-    #&& ln -s libcufile_rdma.so.${GDS_VER} /usr/local/cuda/lib64/libcufile_rdma.so.0
-RUN ln -sfn /usr/local/cuda/gds /usr/local/gds \
-    && ln -s libcufile.so.${GDS_VER} /usr/local/cuda/lib64/libcufile.so \
-    && ln -s libcufile_rdma.so.${GDS_VER} /usr/local/cuda/lib64/libcufile_rdma.so
-
-# dpkg: dependency problems prevent configuration of mlnx-iproute2:
-#  mlnx-iproute2 depends on libcap2 (>= 1:2.10); however:
-#   Package libcap2 is not installed.
-#
-#   liburcu-bp.so.6 => not found
-#   liburcu-cds.so.6 => not found
-#   libjsoncpp.so.1 => not found
-RUN apt-get update \
-    && apt-get install --yes --fix-missing --no-install-recommends \
-        libcap2 \
-        liburcu-dev \
-        libjsoncpp-dev \
-    && wget http://content.mellanox.com/ofed/MLNX_OFED-${MLNX_OFED_VER}/MLNX_OFED_LINUX-${MLNX_OFED_VER}-ubuntu${UBUNTU_VER}-x86_64.tgz \
-    && tar -xzvf MLNX_OFED_LINUX-${MLNX_OFED_VER}-ubuntu${UBUNTU_VER}-x86_64.tgz \
-    && MLNX_OFED_LINUX-${MLNX_OFED_VER}-ubuntu${UBUNTU_VER}-x86_64/mlnxofedinstall --user-space-only --without-fw-update --all -q --force \
-    && rm -rf MLNX_OFED_LINUX* \
-    && apt-get autoremove -y \
-    && rm -rf /var/lib/apt/lists/* \
-    && rm -rf /var/cache/apt/archives/partial/*
-
-# Installation of MLNX_OFED would install python2, overwriting /usr/bin/python
-RUN ln -sf python3 /usr/bin/python \
-    && ln -sf pip3 /usr/bin/pip
-
-COPY ./docker/cufile.json /etc/cufile.json
-RUN sed -i 's/"allow_compat_mode": false,/"allow_compat_mode": true,/' /etc/cufile.json \
-    && echo "/usr/local/gds/lib/" > /etc/ld.so.conf.d/cufile.conf \
-    && ldconfig
-
-ENV LD_LIBRARY_PATH=/usr/local/cuda/lib64:/usr/local/cuda/nvvm/lib64
-
-ENTRYPOINT ["/bin/bash"]
diff --git a/docker/Dockerfile-jupyter-gds-dev b/docker/Dockerfile-jupyter-gds-dev
deleted file mode 100644
index cc7e2ef2c..000000000
--- a/docker/Dockerfile-jupyter-gds-dev
+++ /dev/null
@@ -1,160 +0,0 @@
-#
-# Copyright (c) 2020-2021, NVIDIA CORPORATION.
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#      http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-ARG UBUNTU_VER=18.04
-FROM nvidia/cuda:11.0-devel-ubuntu${UBUNTU_VER}
-
-ARG UBUNTU_VER=18.04
-ARG NODE_VERSION=v14.13.1
-ARG NODE_DISTRO=linux-x64
-ENV UBUNTU_VER=${UBUNTU_VER}
-
-ENV LC_ALL=C.UTF-8
-ENV LANG=C.UTF-8
-ENV DEBIAN_FRONTEND=noninteractive
-
-# Download and install Python3 PIP.
-RUN apt-get update --yes \
-    && apt-get upgrade --yes \
-    && apt-get install --yes --fix-missing --no-install-recommends \
-        ca-certificates \
-        python3-minimal \
-        python3-pip \
-    && rm -rf /var/lib/apt/lists/*
-
-RUN python3 --version
-
-# Set additional environment values that make usage more pleasant.
-ENV TERM=xterm-256color
-
-# Make /usr/bin/python point to the ${VERSION_PYTHON3} version of python
-RUN VERSION_PYTHON3=$(python3 --version | cut -c8-) && VERSION_PYTHON3=${VERSION_PYTHON3%.*} \
-    && rm -f /usr/bin/python \
-    && rm -f /usr/bin/python`echo ${VERSION_PYTHON3} | cut -c1-1` \
-    && ln -s /usr/bin/python${VERSION_PYTHON3} /usr/bin/python \
-    && ln -s /usr/bin/python${VERSION_PYTHON3} /usr/bin/python`echo ${VERSION_PYTHON3} | cut -c1-1`
-
-# Make /usr/bin/pip point to the ${VERSION_PIP3} version of python
-RUN rm -f /usr/bin/pip \
-    && ln -s /usr/bin/pip3 /usr/bin/pip
-
-# libgl1 is needed for opencv at `cucim convert` CLI command.
-RUN apt-get update \
-    && apt-get install -y --no-install-recommends \
-        python3-dev \
-        gcc \
-        g++ \
-        libopenslide-dev \
-        libsm6 \
-        libxext6 \
-        libxrender-dev \
-        libglib2.0-0 \
-        libgl1 \
-        wget \
-        git \
-        xz-utils \
-    && apt-get autoremove -y \
-    && rm -rf /var/lib/apt/lists/* \
-    && rm -rf /var/cache/apt/archives/partial/*
-
-WORKDIR /workspace
-ENV HOME=/workspace
-
-# Install nodejs
-RUN mkdir -p /usr/local/lib/nodejs \
-    && wget https://nodejs.org/dist/$NODE_VERSION/node-${NODE_VERSION}-${NODE_DISTRO}.tar.xz \
-    && tar -xJvf node-${NODE_VERSION}-${NODE_DISTRO}.tar.xz -C /usr/local/lib/nodejs \
-    && rm node-${NODE_VERSION}-${NODE_DISTRO}.tar.xz
-ENV PATH=/usr/local/lib/nodejs/node-$NODE_VERSION-$NODE_DISTRO/bin:$PATH
-
-COPY docker/requirements-jupyter-dev.txt ./
-
-# Use `python -m pip` to avoid using an old script wrapper.
-RUN python -m pip install --no-cache-dir --upgrade pip setuptools wheel \
-    && python -m pip install --no-cache-dir -r requirements-jupyter-dev.txt
-
-# Install Jupyter Extensions
-RUN jupyter labextension install dask-labextension \
-    && jupyter serverextension enable dask_labextension
-
-RUN apt-get update \
-    && apt-get install -y --no-install-recommends \
-        curl \
-#         build-essential \
-#         cmake \
-#         git \
-#         zlib1g-dev \
-#         libssl-dev \
-    && apt-get autoremove -y \
-    && rm -rf /var/lib/apt/lists/*
-
-# Download TRITON Client
-ARG TRITON_CLIENTS_URL=https://github.com/triton-inference-server/server/releases/download/v2.5.0/v2.5.0_ubuntu1804.clients.tar.gz
-RUN mkdir -p /opt/nvidia/triton-clients \
-    && curl -L ${TRITON_CLIENTS_URL} | tar xvz -C /opt/nvidia/triton-clients
-
-RUN pip install --no-cache-dir \
-        /opt/nvidia/triton-clients/python/*manylinux1_x86_64.whl
-
-# Supporting GDS
-
-ARG GDS_VER=0.9.0
-ARG MLNX_OFED_VER=5.1-2.5.8.0
-
-COPY ./temp/gds/tools/README /usr/local/cuda/gds/
-COPY ./temp/gds/samples/ /usr/local/cuda/gds/samples/
-COPY ./temp/gds/tools/ /usr/local/cuda/gds/tools/
-COPY ./temp/gds/lib64/cufile.h /usr/local/cuda/lib64/cufile.h
-COPY ./temp/gds/lib64/libcufile.so.${GDS_VER} /usr/local/cuda/lib64/libcufile.so.${GDS_VER}
-COPY ./temp/gds/lib64/libcufile_rdma.so.${GDS_VER} /usr/local/cuda/lib64/libcufile_rdma.so.${GDS_VER}
-
-# Somehow libcufile.so.0 and libcufile_rdma.so.0 are auto-generated during the copy
-    #&& ln -s libcufile.so.${GDS_VER} /usr/local/cuda/lib64/libcufile.so.0 \
-    #&& ln -s libcufile_rdma.so.${GDS_VER} /usr/local/cuda/lib64/libcufile_rdma.so.0
-RUN ln -sfn /usr/local/cuda/gds /usr/local/gds \
-    && ln -s libcufile.so.${GDS_VER} /usr/local/cuda/lib64/libcufile.so \
-    && ln -s libcufile_rdma.so.${GDS_VER} /usr/local/cuda/lib64/libcufile_rdma.so
-
-# dpkg: dependency problems prevent configuration of mlnx-iproute2:
-#  mlnx-iproute2 depends on libcap2 (>= 1:2.10); however:
-#   Package libcap2 is not installed.
-#
-#   liburcu-bp.so.6 => not found
-#   liburcu-cds.so.6 => not found
-#   libjsoncpp.so.1 => not found
-RUN apt-get update \
-    && apt-get install --yes --fix-missing --no-install-recommends \
-        libcap2 \
-        liburcu-dev \
-        libjsoncpp-dev \
-    && wget http://content.mellanox.com/ofed/MLNX_OFED-${MLNX_OFED_VER}/MLNX_OFED_LINUX-${MLNX_OFED_VER}-ubuntu${UBUNTU_VER}-x86_64.tgz \
-    && tar -xzvf MLNX_OFED_LINUX-${MLNX_OFED_VER}-ubuntu${UBUNTU_VER}-x86_64.tgz \
-    && MLNX_OFED_LINUX-${MLNX_OFED_VER}-ubuntu${UBUNTU_VER}-x86_64/mlnxofedinstall --user-space-only --without-fw-update --all -q --force \
-    && rm -rf MLNX_OFED_LINUX* \
-    && apt-get autoremove -y \
-    && rm -rf /var/lib/apt/lists/* \
-    && rm -rf /var/cache/apt/archives/partial/*
-
-# Installation of MLNX_OFED would install python2, overwriting /usr/bin/python
-RUN ln -sf python3 /usr/bin/python \
-    && ln -sf pip3 /usr/bin/pip
-
-COPY ./docker/cufile.json /etc/cufile.json
-RUN sed -i 's/"allow_compat_mode": false,/"allow_compat_mode": true,/' /etc/cufile.json \
-    && echo "/usr/local/gds/lib/" > /etc/ld.so.conf.d/cufile.conf \
-    && ldconfig
-
-ENV LD_LIBRARY_PATH=/usr/local/cuda/lib64:/usr/local/cuda/nvvm/lib64
-
-ENTRYPOINT ["/bin/bash"]
diff --git a/docker/cufile.json b/docker/cufile.json
deleted file mode 100644
index 55930426c..000000000
--- a/docker/cufile.json
+++ /dev/null
@@ -1,81 +0,0 @@
-{
-    // NOTE : Application can override custom configuration via export CUFILE_ENV_PATH_JSON=<filepath>
-    // e.g : export CUFILE_ENV_PATH_JSON="/home/<xxx>/cufile.json"
-
-            "logging": {
-                            // log directory, if not enabled will create log file under current working directory
-                            //"dir": "/home/<xxxx>",
-
-                            // ERROR|WARN|INFO|DEBUG|TRACE (in decreasing order of priority)
-                            "level": "ERROR"
-            },
-
-            "profile": {
-                            // nvtx profiling on/off
-                            "nvtx": false,
-                            // cufile stats level(0-3)
-                            "cufile_stats": 0
-            },
-
-            "properties": {
-                            // max IO chunk size (parameter should be 4K aligned) used by cuFileRead/Write internally per IO request
-                            "max_direct_io_size_kb" : 16384,
-                            // device memory size (parameter should be 4K aligned) for reserving bounce buffers for the entire GPU
-                            "max_device_cache_size_kb" : 131072,
-                            // limit on maximum device memory size (parameter should be 4K aligned) that can be pinned for a given process
-                            "max_device_pinned_mem_size_kb" : 33554432,
-                            // true or false (true will enable asynchronous io submission to nvidia-fs driver)
-                            // Note : currently the overall IO will still be synchronous
-                            "use_poll_mode" : false,
-                            // maximum IO request size (parameter should be 4K aligned) within or equal to which library will use polling for IO completion
-                            "poll_mode_max_size_kb": 4,
-                            // allow compat mode, this will enable use of cuFile posix read/writes
-                            "allow_compat_mode": false,
-                            // client-side rdma addr list for user-space file-systems(e.g ["10.0.1.0", "10.0.2.0"])
-                            "rdma_dev_addr_list": [ ],
-                            // load balancing policy for RDMA memory registration(MR), (RoundRobin, RoundRobinMaxMin)
-                            // In RoundRobin, MRs will be distributed uniformly across NICS closest to a GPU
-                            // In RoundRobinMaxMin, MRs will be distributed across NICS closest to a GPU
-                            // with minimal sharing of NICS acros GPUS
-                            "rdma_load_balancing_policy": "RoundRobin"
-            },
-
-            "fs": {
-                    "generic": {
-
-                            // for unaligned writes, setting it to true will, cuFileWrite use posix write internally instead of regular GDS write
-                            "posix_unaligned_writes" : false
-                    },
-
-                    "lustre": {
-
-                            // IO threshold for read/write (param should be 4K aligned)) equal to or below which cuFile will use posix read/write
-                            "posix_gds_min_kb" : 0
-                    },
-
-                    "weka": {
-
-                            // enable/disable RDMA write
-                            "rdma_write_support" : false
-                    }
-            },
-
-            "denylist": {
-                            // specify list of vendor driver modules to deny for nvidia-fs (e.g. ["nvme" , "nvme_rdma"])
-                            "drivers":  [ ],
-
-                            // specify list of block devices to prevent IO using cuFile (e.g. [ "/dev/nvme0n1" ])
-                            "devices": [ ],
-
-                            // specify list of mount points to prevent IO using cuFile (e.g. ["/mnt/test"])
-                            "mounts": [ ],
-
-                            // specify list of file-systems to prevent IO using cuFile (e.g ["lustre", "wekafs"])
-                            "filesystems": [ ]
-            },
-
-            "miscellaneous": {
-                            // enable only for enforcing strict checks at API level for debugging
-                            "api_check_aggressive": false
-	    }
-}
diff --git a/docker/requirements-claratrain.txt b/docker/requirements-claratrain.txt
deleted file mode 100644
index 485192268..000000000
--- a/docker/requirements-claratrain.txt
+++ /dev/null
@@ -1,10 +0,0 @@
-openslide-python==1.1.2
-tifffile>=2022.7.28
-itk==5.1.2
-dask[array,delayed,distributed]==2021.2.0
-dask-cuda==0.17.0
-zarr==2.6.1
-fsspec==0.8.5
-numpy # 1.17.3 already exists in the image
-opencv-contrib-python==4.5.1.48
-imagecodecs>=2021.6.8
diff --git a/docker/requirements-jupyter-dev.txt b/docker/requirements-jupyter-dev.txt
deleted file mode 100644
index 57a46ed8b..000000000
--- a/docker/requirements-jupyter-dev.txt
+++ /dev/null
@@ -1,20 +0,0 @@
-openslide-python==1.1.2
-tifffile>=2022.7.28
-itk==5.1.2
-dask[array,delayed,distributed]==2021.2.0
-dask-cuda==0.17.0
-zarr==2.6.1
-fsspec==0.8.5
-numpy==1.19.5
-opencv-contrib-python==4.5.1.48
-imagecodecs>=2021.6.8
-cupy-cuda110==8.4.0
-jupyterlab==3.0.7
-dask_labextension==5.0.0
-cmake>=3.18
---extra-index-url https://developer.download.nvidia.com/compute/redist
-nvidia-dali-cuda110
---find-links https://download.pytorch.org/whl/torch_stable.html
-torch==1.7.1+cu110
-torchvision==0.8.2+cu110
-torchaudio===0.7.2
diff --git a/docker/requirements-jupyter.txt b/docker/requirements-jupyter.txt
deleted file mode 100644
index 57a46ed8b..000000000
--- a/docker/requirements-jupyter.txt
+++ /dev/null
@@ -1,20 +0,0 @@
-openslide-python==1.1.2
-tifffile>=2022.7.28
-itk==5.1.2
-dask[array,delayed,distributed]==2021.2.0
-dask-cuda==0.17.0
-zarr==2.6.1
-fsspec==0.8.5
-numpy==1.19.5
-opencv-contrib-python==4.5.1.48
-imagecodecs>=2021.6.8
-cupy-cuda110==8.4.0
-jupyterlab==3.0.7
-dask_labextension==5.0.0
-cmake>=3.18
---extra-index-url https://developer.download.nvidia.com/compute/redist
-nvidia-dali-cuda110
---find-links https://download.pytorch.org/whl/torch_stable.html
-torch==1.7.1+cu110
-torchvision==0.8.2+cu110
-torchaudio===0.7.2
diff --git a/run b/run
index b66c2f75a..d0a7df295 100755
--- a/run
+++ b/run
@@ -262,24 +262,6 @@ is_x86_64() {
 # Section: Build
 #==================================================================================
 
-build_manylinux2014_desc() { echo 'Build manylinux2014 image
-
-Arguments:
-  $1 - cuda version (e.g., 110, 111)
-'
-}
-build_manylinux2014() {
-    local cuda_version="${1:-110}"
-    run_command docker build -f ${TOP}/Dockerfile-cuda${cuda_version} -t gigony/manylinux2014-x64:cuda${cuda_version} ${TOP}
-
-    read -n 1 -r -p "$(c_str R "Do you want to update dockcross-manylinux2014-x64 with " G "cuda${cuda_version}" R " (y/n)?")"
-    echo
-    if [[ $REPLY =~ ^[Yy]$ ]]; then
-        sed -i -e "s/manylinux2014-x64:cuda.../manylinux2014-x64:cuda${cuda_version}/g" ${TOP}/dockcross-manylinux2014-x64
-        c_echo W "Done"
-    fi
-}
-
 build_local_libcucim_() {
     local source_folder=${1:-${TOP}}
     local build_type=${2:-debug}
diff --git a/run_gds.sh b/run_gds.sh
deleted file mode 100644
index 74b0d235a..000000000
--- a/run_gds.sh
+++ /dev/null
@@ -1,51 +0,0 @@
-#!/bin/bash
-#
-# Copyright (c) 2020-2021, NVIDIA CORPORATION.
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#      http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-
-MNT_PATH=/nvme
-GDS_IMAGE=cucim-gds
-
-BUILD_VER=`uname -r`
-NV_DRIVER=`nvidia-smi -q -i 0 | sed -n 's/Driver Version.*: *\(.*\) *$/\1/p'`
-echo "using nvidia driver version $NV_DRIVER on kernel $BUILD_VER"
-
-
-ofed_version=$(ofed_info -s | grep MLNX)
-if [ $? -eq 0 ]; then
-    rdma_core=$(dpkg -s libibverbs-dev | grep "Source: rdma-core")
-    if [ $? -eq 0 ]; then
-        CONFIG_MOFED_VERSION=$(echo $ofed_version | cut -d '-' -f 2)
-        echo "Found MOFED version $CONFIG_MOFED_VERSION"
-    fi
-    MLNX_SRCS="--volume /usr/src/mlnx-ofed-kernel-${CONFIG_MOFED_VERSION}:/usr/src/mlnx-ofed-kernel-${CONFIG_MOFED_VERSION}:ro"
-    MOFED_DEVS="--net=host --volume /sys/class/infiniband_verbs:/sys/class/infiniband_verbs/ "
-fi
-
-docker run \
-    --ipc host \
-    -it
-    --rm
-    --gpus all \
-    --volume /run/udev:/run/udev:ro \
-    --volume /sys/kernel/config:/sys/kernel/config/ \
-    --volume /usr/src/nvidia-$NV_DRIVER:/usr/src/nvidia-$NV_DRIVER:ro  ${MLNX_SRCS}\
-    --volume /dev:/dev:ro \
-    --privileged \
-    --env NV_DRIVER=${NV_DRIVER} \
-    --volume 	/lib/modules/$BUILD_VER/:/lib/modules/$BUILD_VER \
-    --volume "${MNT_PATH}/data:/data:rw" \
-    --volume "${MNT_PATH}/results:/results:rw"  ${MOFED_DEVS} \
-    -itd ${REPO_URI}/${GDS_IMAGE} \
-    /bin/bash
diff --git a/scripts/auditwheel_repair.py b/scripts/auditwheel_repair.py
deleted file mode 100644
index 2581ea977..000000000
--- a/scripts/auditwheel_repair.py
+++ /dev/null
@@ -1,104 +0,0 @@
-# Apache License, Version 2.0
-# Copyright 2020 NVIDIA Corporation
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-
-import functools
-import re
-from unittest.mock import patch
-
-import auditwheel.elfutils
-from auditwheel.main import main
-from auditwheel.wheeltools import InWheelCtx
-
-# How auditwheel repair works?
-#
-# From https://github.com/pypa/auditwheel/blob/3.2.0/auditwheel/wheel_abi.py#L38
-# 1) Find a Python extension libraries(.so)
-#      if so ==> A, else ==> B
-# 2) `needed_libs` <== external libraries needed by A and B
-# 3) From b in B,
-#      if b is not in `needed_libs`, b is added to A
-# 4) Only external libraries in A are patched to use locally copied .so files
-#    - external libraries that exists under wheel path are discarded
-#      - https://github.com/pypa/auditwheel/blob/3.2.0/auditwheel/policy/external_references.py#L61
-#    - https://github.com/pypa/auditwheel/blob/3.2.0/auditwheel/repair.py#L62
-#
-# With current implementation,
-# - `cucim/_cucim.cpython-XX-x86_64-linux-gnu.so` files are in A by 1)
-# - `cucim/libcucim.so.??` is in B by 1)
-# - `cucim/libcucim.so.??` and `libcudart.so.11.0` are in `needed_libs` by 2)
-# - `cucim/cucim.kit.cuslide@??.??.??.so` is in A by 3)
-#
-# And only libz and libcudart are considered as external libraries.
-
-# To work with cuCIM, we need to
-# 1) make `cucim/libcucim.so.??` as Python extension library
-#   - Patch elf_is_python_extension : https://github.com/pypa/auditwheel/blob/3.2.0/auditwheel/elfutils.py#L81
-# 2) control how to copy external libraries
-#   - Patch copylib: https://github.com/pypa/auditwheel/blob/3.2.0/auditwheel/repair.py#L108
-#   - Need for libnvjpeg library
-# 3) preprocess wheel metadata
-#   - patch InWheelCtx.__enter__ : https://github.com/pypa/auditwheel/blob/3.2.0/auditwheel/wheeltools.py#L158
-#   - `Root-Is-Purelib: true` -> `Root-Is-Purelib: false` from WHEEL file
-
-
-# Parameters
-PYTHON_EXTENSION_LIBRARIES = [r"cucim/libcucim\.so\.\d{1,2}"]
-
-# 1) auditwheel.elfutils.elf_is_python_extension replacement
-orig_elf_is_python_extension = auditwheel.elfutils.elf_is_python_extension
-
-
-@functools.wraps(orig_elf_is_python_extension)
-def elf_is_python_extension(fn, elf):
-    if any(map(lambda x: re.fullmatch(x, fn), PYTHON_EXTENSION_LIBRARIES)):
-        print("[cuCIM] Consider {} as a python extension.".format(fn))
-        return True, 3
-    return orig_elf_is_python_extension(fn, elf)
-
-
-# 3) auditwheel.wheeltools.InWheelCtx.__enter__ replacement
-orig_inwheelctx_enter = InWheelCtx.__enter__
-
-
-@functools.wraps(orig_inwheelctx_enter)
-def inwheelctx_enter(self):
-    rtn = orig_inwheelctx_enter(self)
-
-    # `self.path` is a path that extracted files from the wheel file exists
-
-    # base_dir = glob.glob(join(self.path, '*.dist-info'))
-    # wheel_path = join(base_dir[0], 'WHEEL')
-    # with open(wheel_path, 'r') as f:
-    #     wheel_text = f.read()
-
-    # wheel_text = wheel_text.replace('Root-Is-Purelib: true', 'Root-Is-Purelib: false')  # noqa: E501
-
-    # with open(wheel_path, 'w') as f:
-    #     f.write(wheel_text)
-
-    return rtn
-
-
-# # sys.argv replacement
-# testargs = ["auditwheel_repair.py", "repair", "--plat", "manylinux2014_x86_64", "-w", "wherehouse", "cuclara_image-0.1.1-py3-none-manylinux2014_x86_64.whl"]  # noqa: E501
-# with patch.object(sys, 'argv', testargs):
-
-if __name__ == "__main__":
-    # Patch
-    with patch.object(
-        auditwheel.elfutils, "elf_is_python_extension", elf_is_python_extension
-    ):
-        with patch.object(InWheelCtx, "__enter__", inwheelctx_enter):
-            main()
diff --git a/scripts/run-dist b/scripts/run-dist
deleted file mode 100755
index 60ed771e0..000000000
--- a/scripts/run-dist
+++ /dev/null
@@ -1,500 +0,0 @@
-#!/bin/bash
-#
-# Copyright (c) 2020, NVIDIA CORPORATION.
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#      http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-
-init_globals() {
-    if [ "$0" != "/bin/bash" ]; then
-        SCRIPT_DIR=$(dirname "$(readlink -f "$0")")
-        export RUN_SCRIPT_FILE="$(readlink -f "$0")"
-    else
-        export RUN_SCRIPT_FILE="$(readlink -f "${BASH_SOURCE[0]}")"
-    fi
-
-    export TOP=$(dirname "${RUN_SCRIPT_FILE}")
-}
-
-################################################################################
-# Utility functions
-################################################################################
-
-#######################################
-# Get list of available commands from a given input file.
-#
-# Available commands and command summary are extracted by checking a pattern
-# "_desc() { echo '".
-# Section title is extracted by checking a pattern "# Section: ".
-# This command is used for listing available commands in CLI.
-#
-# e.g.)
-#   "# Section: String/IO functions"
-#     => "# String/IO functions"
-#   "to_lower_desc() { echo 'Convert to lower case"
-#     => "to_lower ----------------- Convert to lower case"
-#
-# Arguments:
-#   $1 - input file that defines commands
-# Returns:
-#   Print list of available commands from $1
-#######################################
-get_list_of_available_commands() {
-    local file_name="$1"
-    if [ ! -e "$1" ]; then
-        echo "$1 doesn't exist!"
-    fi
-
-    local line_str='--------------------------------'
-    local IFS= cmd_lines="$(IFS= cat "$1" | grep -E -e "^(([[:alpha:]_[:digit:]]+)_desc\(\)|# Section: )" | sed "s/_desc() *{ *echo '/ : /")"
-    local line
-    while IFS= read -r line; do
-        local cmd=$(echo "$line" | cut -d":" -f1)
-        local desc=$(echo "$line" | cut -d":" -f2-)
-        if [ "$cmd" = "# Section" ]; then
-            c_echo B "${desc}"
-        else
-            # there is no substring operation in 'sh' so use 'cut'
-            local dash_line="$(echo "${line_str}" | cut -c ${#cmd}-)"  #  = "${line_str:${#cmd}}"
-             c_echo Y "   ${cmd}" w " ${dash_line} ${desc}"
-        fi
-        # use <<EOF, not '<<<"$cmd_lines"' to be executable in sh
-    done <<EOF
-$cmd_lines
-EOF
-}
-
-my_cat_prefix() {
-    local IFS
-    local prefix="$1"
-    local line
-    while IFS= read -r line; do
-        echo "${prefix}${line}" # -e option doesn't work in 'sh' so disallow escaped characters
-    done <&0
-}
-
-
-c_str() {
-    local old_color=39
-    local old_attr=0
-    local color=39
-    local attr=0
-    local text=""
-    #local no_change=0
-    for i in "$@"; do
-        case "$i" in
-            r|R)
-                color=31
-                ;;
-            g|G)
-                color=32
-                ;;
-            y|Y)
-                color=33
-                ;;
-            b|B)
-                color=34
-                ;;
-            p|P)
-                color=35
-                ;;
-            c|C)
-                color=36
-                ;;
-            w|W)
-                color=37
-                ;;
-
-            z|Z)
-                color=0
-                ;;
-        esac
-        case "$i" in
-            l|L|R|G|Y|B|P|C|W)
-                attr=1
-                ;;
-            n|N|r|g|y|b|p|c|w)
-                attr=0
-                ;;
-            z|Z)
-                attr=0
-                ;;
-            *)
-                text="${text}$i"
-        esac
-        if [ ${old_color} -ne ${color} ] || [ ${old_attr} -ne ${attr} ]; then
-            text="${text}\033[${attr};${color}m"
-            old_color=$color
-            old_attr=$attr
-        fi
-    done
-    /bin/echo -en "$text"
-}
-
-c_echo() {
-    local old_opt="$(shopt -op xtrace)" # save old xtrace option
-    set +x # unset xtrace
-    local text="$(c_str "$@")"
-    /bin/echo -e "$text\033[0m"
-    eval "${old_opt}" # restore old xtrace option
-}
-
-
-echo_err() {
-    >&2 echo "$@"
-}
-
-c_echo_err() {
-    >&2 c_echo "$@"
-}
-
-printf_err() {
-    >&2 printf "$@"
-}
-
-get_item_ranges() {
-    local indexes="$1"
-    local list="$2"
-    echo -n "$(echo "${list}" | xargs | cut -d " " -f "${indexes}")"
-    return $?
-}
-
-get_unused_ports() {
-    local num_of_ports=${1:-1}
-    local start=${2:-49152}
-    local end=${3:-61000}
-    comm -23 \
-    <(seq ${start} ${end} | sort) \
-    <(ss -tan | awk '{print $4}' | while read line; do echo ${line##*\:}; done | grep '[0-9]\{1,5\}' | sort -u) \
-    | shuf | tail -n ${num_of_ports} # use tail instead head to avoid broken pipe in VSCode terminal
-}
-
-newline() {
-    echo
-}
-
-info() {
-    c_echo W "$(date -u '+%Y-%m-%d %H:%M:%S') [INFO] " Z "$@"
-}
-
-error() {
-    echo R "$(date -u '+%Y-%m-%d %H:%M:%S') [ERROR] " Z "$@"
-}
-
-fatal() {
-    echo R "$(date -u '+%Y-%m-%d %H:%M:%S') [FATAL] " Z "$@"
-    echo
-    if [ -n "${SCRIPT_DIR}" ]; then
-        exit 1
-    fi
-}
-
-run_command() {
-    local status=0
-    local cmd="$*"
-
-    c_echo B "$(date -u '+%Y-%m-%d %H:%M:%S') " W "\$ " G "${cmd}"
-
-    [ "$(echo -n "$@")" = "" ] && return 1 # return 1 if there is no command available
-
-    "$@"
-    status=$?
-
-    unset IFS
-
-    return $status
-}
-
-retry() {
-    local retries=$1
-    shift
-
-    local count=0
-    until run_command "$@"; do
-        exit=$?
-        wait=$((2 ** count))
-        count=$((count + 1))
-        if [ $count -lt $retries ]; then
-            info "Retry $count/$retries. Exit code=$exit, Retrying in $wait seconds..."
-            sleep $wait
-        else
-            fatal "Retry $count/$retries. Exit code=$exit, no more retries left."
-            return 1
-        fi
-    done
-    return 0
-}
-
-#==================================================================================
-# Section: Example
-#==================================================================================
-
-download_testdata_desc() { echo 'Download test data from Docker Hub
-'
-}
-download_testdata() {
-    c_echo W "Downloading test data..."
-    run_command mkdir -p ${TOP}/notebooks/input
-    if [ ! -e ${TOP}/notebooks/input/README.md ]; then
-        run_command rm -rf ${TOP}/notebooks/input
-        id=$(docker create gigony/svs-testdata:little-big)
-        run_command docker cp $id:/input ${TOP}/notebooks
-        run_command docker rm -v $id
-        c_echo G "Test data is downloaded to ${TOP}/notebooks/input!"
-    else
-        c_echo G "Test data already exists at ${TOP}/notebooks/input!"
-    fi
-}
-
-copy_gds_files_() {
-    [ ! -d /usr/local/cuda/gds ] && c_echo_err R "GDS is not available at /usr/local/cuda/gds !" && return 1
-
-    rm -rf ${TOP}/temp/gds
-    mkdir -p ${TOP}/temp/gds/lib64
-    cp -P -r /usr/local/cuda/gds/* ${TOP}/temp/gds/
-    cp -P /usr/local/cuda/lib64/cufile.h /usr/local/cuda/lib64/libcufile* ${TOP}/temp/gds/lib64/
-}
-
-launch_notebooks_desc() { echo 'Launch jupyter notebooks
-
-Arguments:
-  -p <port> - port number
-  -h <host> - hostname to serve documentation on (default: 0.0.0.0)
-  -g        - launch GDS-enabled container
-'
-}
-launch_notebooks() {
-    local OPTIND
-    local port=$(get_unused_ports 1 10000 10030)
-    local host='0.0.0.0'
-    local gds_postfix=''
-    local gds_nvme_path=''
-
-    while getopts 'p:h:g:' option;
-    do
-        case "${option}" in
-            p)
-                port="$OPTARG"
-                ;;
-            h)
-                host="$OPTARG"
-                ;;
-            g)
-                gds_postfix='-gds'
-                echo "# OPTARG:$OPTARG"
-                [ -z "$OPTARG" ] && c_echo_err R "Please specify NVMe path!" && return 1
-                gds_nvme_path=$(readlink -f "$OPTARG")
-                [ ! -d "$gds_nvme_path" ] && c_echo_err R "Folder $gds_nvme_path doesn't exist!" && return 1
-
-                # Copy cufile SDK from host system to temp/gds
-                copy_gds_files_
-                ;;
-            *)
-                return 1
-       esac
-    done
-
-    download_testdata
-
-    run_command cp ${TOP}/*.whl ${TOP}/notebooks
-
-    run_command docker build --runtime nvidia -t cucim-jupyter${gds_postfix} -f ${TOP}/docker/Dockerfile-jupyter${gds_postfix} ${TOP}
-
-    [ $? -ne 0 ] && return 1
-
-    c_echo W "Port " G "$port" W " would be used...(" B "http://$(hostname -I | cut -d' ' -f 1):${port}" W ")"
-
-    if [ -z "${gds_postfix}" ]; then
-        run_command docker run --runtime nvidia --gpus all -it --rm \
-            -v ${TOP}/notebooks:/notebooks \
-            -p ${port}:${port} \
-            cucim-jupyter \
-            -c "echo -n 'Enter New Password: '; jupyter lab --ServerApp.password=\"\$(python3 -u -c \"from jupyter_server.auth import passwd;pw=input();print(passwd(pw));\" | egrep 'sha|argon')\" --ServerApp.root_dir=/notebooks --allow-root --port=${port} --ip=${host} --no-browser"
-    else
-        local MNT_PATH=/nvme
-        local GDS_IMAGE=cucim-jupyter${gds_postfix}
-
-        local BUILD_VER=`uname -r`
-        local NV_DRIVER=`nvidia-smi -q -i 0 | sed -n 's/Driver Version.*: *\(.*\) *$/\1/p'`
-        echo "using nvidia driver version $NV_DRIVER on kernel $BUILD_VER"
-
-        local ofed_version=$(ofed_info -s | grep MLNX)
-        if [ $? -eq 0 ]; then
-            local rdma_core=$(dpkg -s libibverbs-dev | grep "Source: rdma-core")
-            if [ $? -eq 0 ]; then
-                local CONFIG_MOFED_VERSION=$(echo $ofed_version | cut -d '-' -f 2)
-                echo "Found MOFED version $CONFIG_MOFED_VERSION"
-            fi
-            local MLNX_SRCS="--volume /usr/src/mlnx-ofed-kernel-${CONFIG_MOFED_VERSION}:/usr/src/mlnx-ofed-kernel-${CONFIG_MOFED_VERSION}:ro"
-            local MOFED_DEVS="--net=host --volume /sys/class/infiniband_verbs:/sys/class/infiniband_verbs/ "
-        fi
-
-        docker run \
-            --ipc host \
-            -it \
-            --rm \
-            --gpus all \
-            -v ${TOP}/notebooks:/notebooks \
-            -p ${port}:${port} \
-            --volume /run/udev:/run/udev:ro \
-            --volume /sys/kernel/config:/sys/kernel/config/ \
-            --volume /usr/src/nvidia-$NV_DRIVER:/usr/src/nvidia-$NV_DRIVER:ro  ${MLNX_SRCS}\
-            --volume /dev:/dev:ro \
-            --privileged \
-            --env NV_DRIVER=${NV_DRIVER} \
-            --volume /lib/modules/$BUILD_VER/:/lib/modules/$BUILD_VER \
-            --volume "${MNT_PATH}:/notebooks/nvme:rw" \
-            ${MOFED_DEVS} \
-            ${GDS_IMAGE} \
-            -c "echo -n 'Enter New Password: '; jupyter lab --ServerApp.password=\"\$(python3 -u -c \"from jupyter_server.auth import passwd;pw=input();print(passwd(pw));\" | egrep 'sha|argon')\" --ServerApp.root_dir=/notebooks --allow-root --port=${port} --ip=${host} --no-browser"
-    fi
-}
-
-#==================================================================================
-# Section: Build
-#==================================================================================
-
-build_train() {
-    local image_name=${1:-cucim-train}
-    run_command docker build -t ${image_name} -f ${TOP}/docker/Dockerfile-claratrain ${TOP}/docker
-}
-
-build_train_desc() { echo 'Build Clara Train Docker image with cuCIM (& OpenSlide)
-
-Build image from docker/Dockerfile-claratrain
-
-Arguments:
-  $1 - docker image name (default:cucim-train)
-'
-}
-build_train() {
-    local image_name=${1:-cucim-train}
-    run_command docker build -t ${image_name} -f ${TOP}/docker/Dockerfile-claratrain ${TOP}
-}
-
-build_examples_desc() { echo 'Build cuCIM C++ examples
-'
-}
-build_examples() {
-    local image_name=cucim-cmake
-    run_command docker build -t ${image_name} -f ${TOP}/docker/Dockerfile-cmake ${TOP}/docker
-    run_command docker run -it --rm \
-        -v ${TOP}:/workspace \
-        ${image_name} \
-            -c "
-                mkdir -p /workspace/examples/cpp/build;
-                rm -rf /workspace/examples/cpp/build/*;
-                cd /workspace/examples/cpp/build;
-                cmake .. && make"
-    c_echo W "Copying binary files to ${TOP}/bin folder..."
-    run_command mkdir -p ${TOP}/bin
-    run_command cp ${TOP}/examples/cpp/build/bin/* ${TOP}/bin
-
-    download_testdata
-
-    c_echo W "Execute the binary with the following commands:"
-    c_echo   "  # Set library path"
-    c_echo B "  export LD_LIBRARY_PATH=${TOP}/install/lib:\$LD_LIBRARY_PATH"
-    c_echo   "  # Execute"
-    c_echo B "  ./bin/tiff_image notebooks/input/image.tif ."
-}
-
-parse_args() {
-    local OPTIND
-    while getopts 'yh' option;
-    do
-        case "${option}" in
-            y)
-                ALWAYS_YES=true;
-                ;;
-            h)
-                print_usage
-                exit 1
-                ;;
-            *)
-                ;;
-        esac
-    done
-    shift $((OPTIND-1))
-
-    CMD="$1"
-    shift
-
-    ARGS=("$@")
-}
-
-print_usage() {
-    set +x
-    echo_err
-    echo_err "USAGE: $0 [command] [arguments]..."
-    echo_err ""
-    c_echo_err W "Global Arguments"
-    echo_err
-    c_echo_err W "Command List"
-    c_echo_err Y "    help  " w "----------------------------  Print detailed description for a given argument (command name)"
-    echo_err "$(get_list_of_available_commands "${RUN_SCRIPT_FILE}" | my_cat_prefix " ")"
-    echo_err
-}
-
-print_cmd_help_messages() {
-    local cmd="$1"
-    if [ -n "${cmd}" ]; then
-        if type ${cmd}_desc > /dev/null 2>&1; then
-            ${cmd}_desc
-            exit 0
-        else
-            c_echo_err R "Command '${cmd}' doesn't exist!"
-            exit 1
-        fi
-    fi
-    print_usage
-    return 0
-}
-
-main() {
-    local ret=0
-    parse_args "$@"
-
-    case "$CMD" in
-        help)
-            print_cmd_help_messages "${ARGS[@]}"
-            exit 0
-            ;;
-        build)
-            build_examples "${ARGS[@]}"
-            ;;
-        notebooks)
-            launch_notebooks "${ARGS[@]}"
-            ;;
-        ''|main)
-            print_usage
-            ;;
-        *)
-            if type ${CMD} > /dev/null 2>&1; then
-                "$CMD" "${ARGS[@]}"
-            else
-                print_usage
-                exit 1
-            fi
-            ;;
-    esac
-    ret=$?
-    if [ -n "${SCRIPT_DIR}" ]; then
-        exit $ret
-    fi
-}
-
-init_globals
-
-if [ -n "${SCRIPT_DIR}" ]; then
-    main "$@"
-fi