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README.Rmd
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README.Rmd
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---
output: github_document
---
<!-- README.md is generated from README.Rmd. Please edit that file -->
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
)
```
# erebor
<img src="https://github.com/rainoffallingstar/ereboR/tree/master/dev/erebor.png" height="200" align="right"/> <!-- badges: start -->
<!-- badges: end -->
The goal of erebor is to build a R6-based package for bulk RNAseq and RRBS analysis.
## Installation
You can install the development version of sell:
```{r install,eval=FALSE}
# FILL THIS IN! HOW CAN PEOPLE INSTALL YOUR DEV PACKAGE?
pak::pak("rainoffallingstar/ereboR")
```
## Example
This is a basic example which shows you how to solve a common problem:
```{r example,eval=FALSE}
library(erebor)
## the upstream analysis of RNA-seq
BagginsClass$new(...)
## the upstream analysis of RRBS
SamwiseClass$new(...)
## download public data from TGCA/GEO
laml <- MoriaClass$new(mine = "TCGA-LAML",Dwarf_worker = "TGCA")
#laml$download()
```