diff --git a/dev/articles/pkgdepends-how-to.html b/dev/articles/pkgdepends-how-to.html index 5018c076..02ff3b1a 100644 --- a/dev/articles/pkgdepends-how-to.html +++ b/dev/articles/pkgdepends-how-to.html @@ -100,7 +100,7 @@

How to list #> 1 cli stan… FALSE FALSE OK cli 3.6.2 MIT + … TRUE #> 2 color… stan… FALSE FALSE OK colors… 2.1-0 BSD_3_… TRUE #> 3 fansi stan… FALSE FALSE OK fansi 1.0.6 GPL-2 … TRUE -#> 4 farver stan… FALSE FALSE OK farver 2.1.1 MIT + … TRUE +#> 4 farver stan… FALSE FALSE OK farver 2.1.2 MIT + … TRUE #> 5 ggplo… stan… TRUE TRUE OK ggplot2 3.5.1 MIT + … FALSE #> 6 glue stan… FALSE FALSE OK glue 1.7.0 MIT + … TRUE #> 7 gtable stan… FALSE FALSE OK gtable 0.3.5 MIT + … FALSE @@ -144,7 +144,7 @@

How to list #> ├─rlang #> ├─scales 1.3.0 [new][bld][cmp][dl] (302.54 kB) #> │ ├─cli -#> │ ├─farver 2.1.1 [new][bld][cmp][dl] (1.27 MB) +#> │ ├─farver 2.1.2 [new][bld][cmp][dl] (1.27 MB) #> │ ├─glue #> │ ├─labeling 0.4.3 [new][bld][dl] (10.17 kB) #> │ ├─lifecycle @@ -197,7 +197,7 @@

How to list all depend #> 2 cli stan… FALSE FALSE OK cli 3.6.2 MIT + … TRUE #> 3 color… stan… FALSE FALSE OK colors… 2.1-0 BSD_3_… TRUE #> 4 fansi stan… FALSE FALSE OK fansi 1.0.6 GPL-2 … TRUE -#> 5 farver stan… FALSE FALSE OK farver 2.1.1 MIT + … TRUE +#> 5 farver stan… FALSE FALSE OK farver 2.1.2 MIT + … TRUE #> 6 glue stan… FALSE FALSE OK glue 1.7.0 MIT + … TRUE #> 7 gtable stan… FALSE FALSE OK gtable 0.3.5 MIT + … FALSE #> 8 isoba… stan… FALSE FALSE OK isoband 0.2.7 MIT + … TRUE @@ -270,41 +270,41 @@

How to download a 
 #> ℹ Getting 28 pkgs (24.98 MB), 5 (1.61 MB) cached                                
+#> ✔ Got fansi 1.0.6 (source) (482.48 kB)                                          
 #> ✔ Got labeling 0.4.3 (source) (10.17 kB)                                        
 #> ✔ Got lifecycle 1.0.4 (source) (107.66 kB)                                      
-#> ✔ Got fansi 1.0.6 (source) (482.48 kB)                                          
-#> ✔ Got pkgconfig 2.0.3 (source) (6.08 kB)                                        
-#> ✔ Got farver 2.1.1 (source) (1.27 MB)                                           
-#> ✔ Got utf8 1.2.4 (source) (241.08 kB)                                           
-#> ✔ Got MASS 7.3-60.2 (source) (511.86 kB)                                        
-#> ✔ Got mgcv 1.9-1 (source) (1.08 MB)                                             
-#> ✔ Got vctrs 0.6.5 (source) (969.07 kB)                                          
-#> ✔ Got gtable 0.3.5 (source) (130.23 kB)                                         
+#> ✔ Got farver 2.1.2 (source) (1.28 MB)                                           
 #> ✔ Got colorspace 2.1-0 (source) (2.12 MB)                                       
-#> ✔ Got munsell 0.5.1 (source) (182.31 kB)                                        
+#> ✔ Got pkgconfig 2.0.3 (source) (6.08 kB)                                        
+#> ✔ Got scales 1.3.0 (source) (302.54 kB)                                         
 #> ✔ Got nlme 3.1-164 (source) (836.83 kB)                                         
+#> ✔ Got gtable 0.3.5 (source) (130.23 kB)                                         
+#> ✔ Got vctrs 0.6.5 (source) (969.07 kB)                                          
+#> ✔ Got viridisLite 0.4.2 (source) (1.27 MB)                                      
+#> ✔ Got mgcv 1.9-1 (source) (1.08 MB)                                             
+#> ✔ Got pillar 1.9.0 (source) (444.53 kB)                                         
 #> ✔ Got lattice 0.22-6 (source) (598.58 kB)                                       
-#> ✔ Got MASS 7.3-60.2 (source) (511.86 kB)                                        
-#> ✔ Got tibble 3.2.1 (source) (565.98 kB)                                         
 #> ✔ Got mgcv 1.9-1 (source) (1.08 MB)                                             
-#> ✔ Got isoband 0.2.7 (source) (1.59 MB)                                          
-#> ✔ Got viridisLite 0.4.2 (source) (1.27 MB)                                      
-#> ✔ Got scales 1.3.0 (source) (302.54 kB)                                         
-#> ✔ Got nlme 3.1-164 (source) (836.83 kB)                                         
+#> ✔ Got MASS 7.3-60.2 (source) (511.86 kB)                                        
+#> ✔ Got lattice 0.22-6 (source) (598.58 kB)                                       
 #> ✔ Got magrittr 2.0.3 (source) (267.07 kB)                                       
-#> ✔ Got pillar 1.9.0 (source) (444.53 kB)                                         
-#> ✔ Got Matrix 1.7-0 (source) (2.47 MB)                                           
+#> ✔ Got munsell 0.5.1 (source) (182.31 kB)                                        
+#> ✔ Got isoband 0.2.7 (source) (1.59 MB)                                          
+#> ✔ Got utf8 1.2.4 (source) (241.08 kB)                                           
 #> ✔ Got RColorBrewer 1.1-3 (source) (11.64 kB)                                    
-#> ✔ Got lattice 0.22-6 (source) (598.58 kB)                                       
+#> ✔ Got nlme 3.1-164 (source) (836.83 kB)                                         
+#> ✔ Got tibble 3.2.1 (source) (565.98 kB)                                         
+#> ✔ Got MASS 7.3-60.2 (source) (511.86 kB)                                        
 #> ✔ Got ggplot2 3.5.1 (source) (3.60 MB)                                          
 #> ✔ Got Matrix 1.7-0 (source) (2.47 MB)                                           
+#> ✔ Got Matrix 1.7-0 (source) (2.47 MB)                                           
 #> # A data frame: 33 × 40                                                         
 #>    ref    type  direct directpkg status package version license needscompilation
 #>    <chr>  <chr> <lgl>  <lgl>     <chr>  <chr>   <chr>   <chr>   <lgl>           
 #>  1 cli    stan… FALSE  FALSE     OK     cli     3.6.2   MIT + … TRUE            
 #>  2 color… stan… FALSE  FALSE     OK     colors… 2.1-0   BSD_3_… TRUE            
 #>  3 fansi  stan… FALSE  FALSE     OK     fansi   1.0.6   GPL-2 … TRUE            
-#>  4 farver stan… FALSE  FALSE     OK     farver  2.1.1   MIT + … TRUE            
+#>  4 farver stan… FALSE  FALSE     OK     farver  2.1.2   MIT + … TRUE            
 #>  5 ggplo… stan… TRUE   TRUE      OK     ggplot2 3.5.1   MIT + … FALSE           
 #>  6 glue   stan… FALSE  FALSE     OK     glue    1.7.0   MIT + … TRUE            
 #>  7 gtable stan… FALSE  FALSE     OK     gtable  0.3.5   MIT + … FALSE           
@@ -342,13 +342,13 @@ 
How to install a package in
 
 #> ℹ No downloads are needed, 1 pkg (6.08 kB) is cached                            
 #> ℹ Building pkgconfig 2.0.3                                                      
-#> ✔ Built pkgconfig 2.0.3 (863ms)                                                 
+#> ✔ Built pkgconfig 2.0.3 (870ms)                                                 
 #> ✔ Installed pkgconfig 2.0.3  (1s)                                               
 #> ✔ Summary:   1 new  in 1.9s                                                     
 #> # A data frame: 1 × 31                                                          
 #>   library        package title version license imports suggests needscompilation
 #>   <chr>          <chr>   <chr> <chr>   <chr>   <chr>   <chr>    <lgl>           
-#> 1 /tmp/RtmpaN6g… pkgcon… Priv… 2.0.3   MIT + … utils   covr, t… FALSE           
+#> 1 /tmp/Rtmpxh4M… pkgcon… Priv… 2.0.3   MIT + … utils   covr, t… FALSE           
 #> # ℹ 23 more variables: repository <chr>, built <chr>, remotetype <chr>,         
 #> #   remotepkgref <chr>, remoteref <chr>, remoterepos <chr>,                     
 #> #   remotepkgplatform <chr>, remotesha <chr>, depends <chr>, linkingto <chr>,   
@@ -376,15 +376,15 @@ 
How to update a package?ℹ No downloads are needed, 1 pkg is cached                                      
 #> ✔ Got pkgconfig 2.0.2 (source) (13.22 kB)                                       
 #> ℹ Packaging pkgconfig 2.0.2                                                     
-#> ✔ Packaged pkgconfig 2.0.2 (458ms)                                              
+#> ✔ Packaged pkgconfig 2.0.2 (464ms)                                              
 #> ℹ Building pkgconfig 2.0.2                                                      
-#> ✔ Built pkgconfig 2.0.2 (860ms)                                                 
-#> ✔ Installed pkgconfig 2.0.2 (github::cran/pkgconfig@d892880) (17ms)             
-#> ✔ Summary:   1 new  in 877ms                                                    
+#> ✔ Built pkgconfig 2.0.2 (866ms)                                                 
+#> ✔ Installed pkgconfig 2.0.2 (github::cran/pkgconfig@d892880) (1s)               
+#> ✔ Summary:   1 new  in 1.9s                                                     
 #> # A data frame: 1 × 32                                                          
 #>   library        package title version license imports suggests needscompilation
 #>   <chr>          <chr>   <chr> <chr>   <chr>   <chr>   <chr>    <lgl>           
-#> 1 /tmp/RtmpaN6g… pkgcon… Priv… 2.0.2   MIT + … utils   covr, t… FALSE           
+#> 1 /tmp/Rtmpxh4M… pkgcon… Priv… 2.0.2   MIT + … utils   covr, t… FALSE           
 #> # ℹ 24 more variables: repository <chr>, built <chr>, remotetype <chr>,         
 #> #   remotehost <chr>, remoterepo <chr>, remoteusername <chr>,                   
 #> #   remotepkgref <chr>, remoteref <chr>, remotesha <chr>, depends <chr>,        
@@ -406,13 +406,13 @@ 
How to update a package?
 #> ℹ No downloads are needed, 1 pkg (6.08 kB) is cached                            
 #> ℹ Building pkgconfig 2.0.3                                                      
-#> ✔ Built pkgconfig 2.0.3 (862ms)                                                 
+#> ✔ Built pkgconfig 2.0.3 (864ms)                                                 
 #> ✔ Installed pkgconfig 2.0.3  (1s)                                               
 #> ✔ Summary:   1 updated  in 1.9s                                                 
 #> # A data frame: 1 × 31                                                          
 #>   library        package title version license imports suggests needscompilation
 #>   <chr>          <chr>   <chr> <chr>   <chr>   <chr>   <chr>    <lgl>           
-#> 1 /tmp/RtmpaN6g… pkgcon… Priv… 2.0.3   MIT + … utils   covr, t… FALSE           
+#> 1 /tmp/Rtmpxh4M… pkgcon… Priv… 2.0.3   MIT + … utils   covr, t… FALSE           
 #> # ℹ 23 more variables: repository <chr>, built <chr>, remotetype <chr>,         
 #> #   remotepkgref <chr>, remoteref <chr>, remoterepos <chr>,                     
 #> #   remotepkgplatform <chr>, remotesha <chr>, depends <chr>, linkingto <chr>,   
diff --git a/dev/index.html b/dev/index.html
index 6e3189aa..cbd59049 100644
--- a/dev/index.html
+++ b/dev/index.html
@@ -135,7 +135,7 @@ 
Package dependenciespd$draw()
-## ✔ Updated metadata database: 2.91 MB in 8 files.                                
+## ✔ Updated metadata database: 2.92 MB in 8 files.                                
 ## ✔ Updating metadata database ... done                                           
 ## r-lib/pkgcache 2.2.2.9000 [new][bld][cmp][dl] (unknown size)                    
 ## ├─callr 3.7.6 [new][bld][dl] (104.36 kB)                                        
@@ -192,9 +192,9 @@ 
Package installationℹ Packaging cli 3.6.2.9000                                                      
 ## ✔ Packaged cli 3.6.2.9000 (1.2s)                                                
 ## ℹ Building cli 3.6.2.9000                                                       
-## ✔ Built cli 3.6.2.9000 (7.5s)                                                   
-## ✔ Installed cli 3.6.2.9000 (github::r-lib/cli@71fd2a5) (1s)                     
-## ✔ Summary:   1 new  in 8.6s                                                     
+## ✔ Built cli 3.6.2.9000 (8.2s)                                                   
+## ✔ Installed cli 3.6.2.9000 (github::r-lib/cli@71fd2a5) (31ms)                   
+## ✔ Summary:   1 new  in 8.2s
diff --git a/dev/pkgdown.yml b/dev/pkgdown.yml index 1553717b..660e0dbd 100644 --- a/dev/pkgdown.yml +++ b/dev/pkgdown.yml @@ -3,7 +3,7 @@ pkgdown: 2.0.9 pkgdown_sha: ~ articles: pkgdepends-how-to: pkgdepends-how-to.html -last_built: 2024-05-06T13:10Z +last_built: 2024-05-30T10:09Z urls: reference: https://r-lib.github.io/pkgdepends/reference article: https://r-lib.github.io/pkgdepends/articles diff --git a/dev/reference/pkg_deps.html b/dev/reference/pkg_deps.html index 9410f3e1..55835840 100644 --- a/dev/reference/pkg_deps.html +++ b/dev/reference/pkg_deps.html @@ -409,7 +409,7 @@

Examples#> #> ## metadata_cache_dir #> <default> -#> [1] "/tmp/RtmpoTKrbB/file1ba832d02357" +#> [1] "/tmp/RtmpGEnyB9/file1a7885c856f" #> #> ## platforms #> <default> @@ -425,11 +425,11 @@

Examples#> #> ## cache_dir #> <default> -#> [1] "/tmp/RtmpoTKrbB/file1ba86434d345" +#> [1] "/tmp/RtmpGEnyB9/file1a78668aa24c" #> #> ## library #> <set> -#> [1] "/tmp/RtmpoTKrbB/file1ba83afc15c8" +#> [1] "/tmp/RtmpGEnyB9/file1a787250ef9d" #> #> ## metadata_update_after #> <default> @@ -504,7 +504,7 @@

Examplespd <- new_pkg_deps("pak") pd$resolve() #> -#> ✔ Updated metadata database: 3.43 MB in 3 files. +#> ✔ Updated metadata database: 3.45 MB in 3 files. #> #> ℹ Updating metadata database #> ✔ Updating metadata database ... done diff --git a/dev/reference/pkg_download_proposal.html b/dev/reference/pkg_download_proposal.html index 8c4f5cdf..5587ff6b 100644 --- a/dev/reference/pkg_download_proposal.html +++ b/dev/reference/pkg_download_proposal.html @@ -362,7 +362,7 @@

Examples#> #> ## metadata_cache_dir #> <default> -#> [1] "/tmp/RtmpoTKrbB/file1ba83f12b5b8" +#> [1] "/tmp/RtmpGEnyB9/file1a781aa01059" #> #> ## platforms #> <default> @@ -378,7 +378,7 @@

Examples#> #> ## cache_dir #> <default> -#> [1] "/tmp/RtmpoTKrbB/file1ba86434d345" +#> [1] "/tmp/RtmpGEnyB9/file1a78668aa24c" #> #> ## library #> <default> @@ -499,32 +499,32 @@

Examplespdl$download() #> ℹ Getting 13 pkgs (3.80 MB) and 14 pkgs with unknown sizes #> ✔ Got callr 3.7.6 (source) (104.36 kB) -#> ✔ Got filelock 1.0.3 (x86_64-pc-linux-gnu-ubuntu-22.04) (24.75 kB) #> ✔ Got desc 1.4.3 (source) (80.07 kB) -#> ✔ Got ps 1.7.6 (source) (129.49 kB) +#> ✔ Got pkgbuild 1.4.4 (source) (48.79 kB) #> ✔ Got filelock 1.0.3 (source) (15.44 kB) -#> ✔ Got pkgbuild 1.4.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (202.26 kB) +#> ✔ Got ps 1.7.6 (source) (129.49 kB) +#> ✔ Got filelock 1.0.3 (x86_64-pc-linux-gnu-ubuntu-22.04) (24.75 kB) +#> ✔ Got R6 2.5.1 (source) (63.42 kB) +#> ✔ Got cli 3.6.2 (source) (569.77 kB) +#> ✔ Got R6 2.5.1 (x86_64-pc-linux-gnu-ubuntu-22.04) (83.25 kB) +#> ✔ Got zip 2.3.1 (source) (111.28 kB) +#> ✔ Got pkgcache 2.2.2 (source) (271.72 kB) #> ✔ Got curl 5.2.1 (source) (716.70 kB) +#> ✔ Got processx 3.8.4 (source) (163.98 kB) #> ✔ Got lpSolve 5.6.20 (x86_64-pc-linux-gnu-ubuntu-22.04) (373.78 kB) -#> ✔ Got zip 2.3.1 (source) (111.28 kB) -#> ✔ Got cli 3.6.2 (source) (569.77 kB) #> ✔ Got callr 3.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) (445.43 kB) -#> ✔ Got pkgbuild 1.4.4 (source) (48.79 kB) -#> ✔ Got processx 3.8.4 (source) (163.98 kB) #> ✔ Got lpSolve 5.6.20 (source) (468.22 kB) -#> ✔ Got R6 2.5.1 (source) (63.42 kB) +#> ✔ Got desc 1.4.3 (x86_64-pc-linux-gnu-ubuntu-22.04) (334.41 kB) +#> ✔ Got pkgbuild 1.4.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (202.26 kB) #> ✔ Got curl 5.2.1 (x86_64-pc-linux-gnu-ubuntu-22.04) (768.44 kB) #> ✔ Got processx 3.8.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (444.53 kB) -#> ✔ Got desc 1.4.3 (x86_64-pc-linux-gnu-ubuntu-22.04) (334.41 kB) -#> ✔ Got R6 2.5.1 (x86_64-pc-linux-gnu-ubuntu-22.04) (83.26 kB) -#> ✔ Got pkgcache 2.2.2 (source) (271.72 kB) +#> ✔ Got jsonlite 1.8.8 (source) (1.05 MB) #> ✔ Got jsonlite 1.8.8 (x86_64-pc-linux-gnu-ubuntu-22.04) (1.09 MB) -#> ✔ Got cli 3.6.2 (x86_64-pc-linux-gnu-ubuntu-22.04) (1.30 MB) #> ✔ Got ps 1.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) (392.88 kB) +#> ✔ Got cli 3.6.2 (x86_64-pc-linux-gnu-ubuntu-22.04) (1.30 MB) #> ✔ Got pkgcache 2.2.2 (x86_64-pc-linux-gnu-ubuntu-22.04) (927.93 kB) #> ✔ Got zip 2.3.1 (x86_64-pc-linux-gnu-ubuntu-22.04) (636.87 kB) -#> ✔ Got jsonlite 1.8.8 (source) (1.05 MB) -#> ✔ Got pkgdepends 0.7.2.9000 (source) (716.47 kB) +#> ✔ Got pkgdepends 0.7.2.9000 (source) (716.54 kB) pdl$get_downloads() #> # A data frame: 27 × 40 #> ref type direct directpkg status package version license @@ -552,25 +552,25 @@

Examplespdl$download() #> ℹ Getting 7 pkgs (2.34 MB) and 14 pkgs with unknown sizes, 7 (1.16 MB) cached #> ✔ Got crayon 1.5.2 (source) (40.57 kB) -#> ✔ Got glue 1.7.0 (source) (105.42 kB) +#> ✔ Got pkgload 1.3.4 (source) (78.19 kB) #> ✔ Got rprojroot 2.0.4 (source) (59.95 kB) +#> ✔ Got glue 1.7.0 (source) (105.42 kB) +#> ✔ Got withr 3.0.0 (source) (107.68 kB) +#> ✔ Cached copy of cli 3.6.2 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of desc 1.4.3 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of callr 3.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build -#> ✔ Got pkgload 1.3.4 (source) (78.19 kB) -#> ✔ Cached copy of cli 3.6.2 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build -#> ✔ Cached copy of processx 3.8.4 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build +#> ✔ Got fs 1.6.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (309.52 kB) +#> ✔ Got rlang 1.1.3 (source) (763.76 kB) +#> ✔ Got crayon 1.5.2 (x86_64-pc-linux-gnu-ubuntu-22.04) (162.94 kB) #> ✔ Cached copy of pkgbuild 1.4.4 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of ps 1.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build +#> ✔ Got glue 1.7.0 (x86_64-pc-linux-gnu-ubuntu-22.04) (153.02 kB) +#> ✔ Cached copy of processx 3.8.4 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build +#> ✔ Got fs 1.6.4 (source) (1.20 MB) #> ✔ Cached copy of R6 2.5.1 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build -#> ✔ Got withr 3.0.0 (source) (107.68 kB) -#> ✔ Got crayon 1.5.2 (x86_64-pc-linux-gnu-ubuntu-22.04) (162.94 kB) -#> ✔ Got pkgload 1.3.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (180.47 kB) #> ✔ Got rprojroot 2.0.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (107.18 kB) -#> ✔ Got fs 1.6.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (309.52 kB) -#> ✔ Got glue 1.7.0 (x86_64-pc-linux-gnu-ubuntu-22.04) (153.02 kB) #> ✔ Got withr 3.0.0 (x86_64-pc-linux-gnu-ubuntu-22.04) (242.10 kB) -#> ✔ Got rlang 1.1.3 (source) (763.76 kB) -#> ✔ Got fs 1.6.4 (source) (1.20 MB) +#> ✔ Got pkgload 1.3.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (180.47 kB) #> ✔ Got rlang 1.1.3 (x86_64-pc-linux-gnu-ubuntu-22.04) (1.59 MB) pdl$get_downloads() #> # A data frame: 28 × 40 @@ -614,18 +614,18 @@

Examples#> ℹ Getting 14 pkgs with unknown sizes, 13 (3.80 MB) cached #> ✔ Cached copy of pkgdepends 0.7.2.9000 (source) is the latest build #> ✔ Cached copy of callr 3.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build -#> ✔ Cached copy of desc 1.4.3 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build -#> ✔ Cached copy of filelock 1.0.3 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of cli 3.6.2 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of curl 5.2.1 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build -#> ✔ Cached copy of lpSolve 5.6.20 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build +#> ✔ Cached copy of jsonlite 1.8.8 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build +#> ✔ Cached copy of filelock 1.0.3 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of pkgbuild 1.4.4 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build +#> ✔ Cached copy of zip 2.3.1 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of processx 3.8.4 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build -#> ✔ Cached copy of jsonlite 1.8.8 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of pkgcache 2.2.2 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build +#> ✔ Cached copy of desc 1.4.3 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of ps 1.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build -#> ✔ Cached copy of zip 2.3.1 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of R6 2.5.1 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build +#> ✔ Cached copy of lpSolve 5.6.20 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build pdl #> <pkg_download_proposal> #> + refs: diff --git a/dev/reference/pkg_installation_proposal.html b/dev/reference/pkg_installation_proposal.html index 6a498a7d..68908da9 100644 --- a/dev/reference/pkg_installation_proposal.html +++ b/dev/reference/pkg_installation_proposal.html @@ -583,7 +583,7 @@

Examplespdi <- new_pkg_installation_proposal( "r-lib/pkgdepends", config = list(library = tempfile())) -#> ℹ Creating library directory: /tmp/RtmpoTKrbB/file1ba836b5ddc8 +#> ℹ Creating library directory: /tmp/RtmpGEnyB9/file1a787843a248 pdi #> <pkg_installation_proposal> #> + refs: @@ -597,7 +597,7 @@

Examples "pak", config = list(library = tempfile()) ) -#> ℹ Creating library directory: /tmp/RtmpoTKrbB/file1ba877f94ab2 +#> ℹ Creating library directory: /tmp/RtmpGEnyB9/file1a7850a5e205 pdi$get_config() #> # pkg config #> ## build_vignettes @@ -614,7 +614,7 @@

Examples#> #> ## metadata_cache_dir #> <default> -#> [1] "/tmp/RtmpoTKrbB/file1ba8e294040" +#> [1] "/tmp/RtmpGEnyB9/file1a784e186b3" #> #> ## platforms #> <default> @@ -630,11 +630,11 @@

Examples#> #> ## cache_dir #> <default> -#> [1] "/tmp/RtmpoTKrbB/file1ba86434d345" +#> [1] "/tmp/RtmpGEnyB9/file1a78668aa24c" #> #> ## library #> <set> -#> [1] "/tmp/RtmpoTKrbB/file1ba877f94ab2" +#> [1] "/tmp/RtmpGEnyB9/file1a7850a5e205" #> #> ## metadata_update_after #> <default> @@ -726,7 +726,7 @@

Examples "r-lib/pkgdepends", config = list(library = tempfile()) ) -#> ℹ Creating library directory: /tmp/RtmpoTKrbB/file1ba833cdef48 +#> ℹ Creating library directory: /tmp/RtmpGEnyB9/file1a786bce5b06 pdi$get_solve_policy() #> [1] "lazy" pdi$set_solve_policy("upgrade") @@ -736,7 +736,7 @@

Examples "r-lib/pkgdepends", config = list(library = tempfile()) ) -#> ℹ Creating library directory: /tmp/RtmpoTKrbB/file1ba83dd41750 +#> ℹ Creating library directory: /tmp/RtmpGEnyB9/file1a7836be6306 pdi$get_solve_policy() #> [1] "lazy" pdi$set_solve_policy("upgrade") @@ -826,7 +826,7 @@

Examples "pak", config = list(library = tempfile()) ) -#> ℹ Creating library directory: /tmp/RtmpoTKrbB/file1ba849ddbb38 +#> ℹ Creating library directory: /tmp/RtmpGEnyB9/file1a78396cd667 pdi #> <pkg_installation_proposal> #> + refs: diff --git a/dev/reference/sysreqs_install_plan.html b/dev/reference/sysreqs_install_plan.html index 55892a97..598b0118 100644 --- a/dev/reference/sysreqs_install_plan.html +++ b/dev/reference/sysreqs_install_plan.html @@ -143,7 +143,7 @@

Examples#> [1] "apt-get -y update" #> #> $install_scripts -#> [1] "apt-get -y install libcurl4-openssl-dev libssl-dev make zlib1g-dev pandoc libfreetype6-dev libjpeg-dev libpng-dev libtiff-dev libicu-dev libfontconfig1-dev libfribidi-dev libharfbuzz-dev libxml2-dev" +#> [1] "apt-get -y install libcurl4-openssl-dev libssl-dev make zlib1g-dev libfreetype6-dev libjpeg-dev libpng-dev libtiff-dev pandoc libicu-dev libfontconfig1-dev libfribidi-dev libharfbuzz-dev libxml2-dev" #> #> $post_install #> character(0) diff --git a/dev/reference/sysreqs_list_system_packages.html b/dev/reference/sysreqs_list_system_packages.html index b4046725..9c22defe 100644 --- a/dev/reference/sysreqs_list_system_packages.html +++ b/dev/reference/sysreqs_list_system_packages.html @@ -95,7 +95,7 @@

Examples#> * <chr> <chr> <chr> <list> #> 1 ii acl 2.3.1-1 <chr [0]> #> 2 ii adduser 3.118ubuntu5 <chr [0]> -#> 3 ii adoptium-ca-certificates 1.0.2-1 <chr [0]> +#> 3 ii adoptium-ca-certificates 1.0.3-1 <chr [0]> #> 4 ii adwaita-icon-theme 41.0-1ubuntu1 <chr [0]> #> 5 ii alsa-topology-conf 1.2.5.1-2 <chr [0]> #> 6 ii alsa-ucm-conf 1.2.6.3-1ubuntu1.11 <chr [0]> diff --git a/dev/search.json b/dev/search.json index ac3fe45a..1522bcb2 100644 --- a/dev/search.json +++ b/dev/search.json @@ -1 +1 @@ -[{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement codeofconduct@posit.co. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired [Mozilla’s code conduct enforcement ladder][https://github.com/mozilla/inclusion]. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"MIT License","title":"MIT License","text":"Copyright (c) 2023 pkgdepends authors Permission hereby granted, free charge, person obtaining copy software associated documentation files (“Software”), deal Software without restriction, including without limitation rights use, copy, modify, merge, publish, distribute, sublicense, /sell copies Software, permit persons Software furnished , subject following conditions: copyright notice permission notice shall included copies substantial portions Software. SOFTWARE PROVIDED “”, WITHOUT WARRANTY KIND, EXPRESS IMPLIED, INCLUDING LIMITED WARRANTIES MERCHANTABILITY, FITNESS PARTICULAR PURPOSE NONINFRINGEMENT. EVENT SHALL AUTHORS COPYRIGHT HOLDERS LIABLE CLAIM, DAMAGES LIABILITY, WHETHER ACTION CONTRACT, TORT OTHERWISE, ARISING , CONNECTION SOFTWARE USE DEALINGS SOFTWARE.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/articles/pkgdepends-how-to.html","id":"how-to-list-all-dependencies-of-a-cranbioconductor-package","dir":"Articles","previous_headings":"Dependencies","what":"How to list all dependencies of a CRAN/Bioconductor package?","title":"pkgdepends HOWTO","text":"can also draw dependency tree:","code":"library(pkgdepends) prop <- new_pkg_deps(\"ggplot2\") prop$solve() prop$get_solution()$data #> ✔ Loading metadata database ... done #> # A data frame: 28 × 38 #> ref type direct directpkg status package version license needscompilation #> #> 1 cli stan… FALSE FALSE OK cli 3.6.2 MIT + … TRUE #> 2 color… stan… FALSE FALSE OK colors… 2.1-0 BSD_3_… TRUE #> 3 fansi stan… FALSE FALSE OK fansi 1.0.6 GPL-2 … TRUE #> 4 farver stan… FALSE FALSE OK farver 2.1.1 MIT + … TRUE #> 5 ggplo… stan… TRUE TRUE OK ggplot2 3.5.1 MIT + … FALSE #> 6 glue stan… FALSE FALSE OK glue 1.7.0 MIT + … TRUE #> 7 gtable stan… FALSE FALSE OK gtable 0.3.5 MIT + … FALSE #> 8 isoba… stan… FALSE FALSE OK isoband 0.2.7 MIT + … TRUE #> 9 label… stan… FALSE FALSE OK labeli… 0.4.3 MIT + … FALSE #> 10 lifec… stan… FALSE FALSE OK lifecy… 1.0.4 MIT + … FALSE #> # ℹ 18 more rows #> # ℹ 29 more variables: priority , md5sum , sha256 , #> # filesize , built , platform , rversion , #> # repotype , repodir , target , deps , mirror , #> # sources , remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , #> # cache_status , sysreqs_packages , sysreqs_pre_install , … #> # ℹ Use `print(n = ...)` to see more rows prop$draw() #> ggplot2 3.5.1 [new][bld][dl] (3.56 MB) #> ├─cli 3.6.2 [new][bld][cmp] #> ├─glue 1.7.0 [new][bld][cmp] #> ├─gtable 0.3.5 [new][bld][dl] (130.10 kB) #> │ ├─cli #> │ ├─glue #> │ ├─lifecycle 1.0.4 [new][bld][dl] (107.66 kB) #> │ │ ├─cli #> │ │ ├─glue #> │ │ └─rlang 1.1.3 [new][bld][cmp] #> │ └─rlang #> ├─isoband 0.2.7 [new][bld][cmp][dl] (1.59 MB) #> ├─lifecycle #> ├─MASS 7.3-60.2 #> ├─mgcv 1.9-1 #> │ ├─nlme 3.1-164 #> │ │ └─lattice 0.22-6 #> │ └─Matrix 1.7-0 #> │ └─lattice #> ├─rlang #> ├─scales 1.3.0 [new][bld][cmp][dl] (302.54 kB) #> │ ├─cli #> │ ├─farver 2.1.1 [new][bld][cmp][dl] (1.27 MB) #> │ ├─glue #> │ ├─labeling 0.4.3 [new][bld][dl] (10.17 kB) #> │ ├─lifecycle #> │ ├─munsell 0.5.1 [new][bld][dl] (182.31 kB) #> │ │ └─colorspace 2.1-0 [new][bld][cmp][dl] (2.12 MB) #> │ ├─R6 2.5.1 [new][bld] #> │ ├─RColorBrewer 1.1-3 [new][bld][dl] (11.64 kB) #> │ ├─rlang #> │ └─viridisLite 0.4.2 [new][bld][dl] (1.27 MB) #> ├─tibble 3.2.1 [new][bld][cmp][dl] (565.98 kB) #> │ ├─fansi 1.0.6 [new][bld][cmp][dl] (482.48 kB) #> │ ├─lifecycle #> │ ├─magrittr 2.0.3 [new][bld][cmp][dl] (267.07 kB) #> │ ├─pillar 1.9.0 [new][bld][dl] (444.53 kB) #> │ │ ├─cli #> │ │ ├─fansi #> │ │ ├─glue #> │ │ ├─lifecycle #> │ │ ├─rlang #> │ │ ├─utf8 1.2.4 [new][bld][cmp][dl] (241.08 kB) #> │ │ └─vctrs 0.6.5 [new][bld][cmp][dl] (969.07 kB) #> │ │ ├─cli #> │ │ ├─glue #> │ │ ├─lifecycle #> │ │ └─rlang #> │ ├─pkgconfig 2.0.3 [new][bld][dl] (6.08 kB) #> │ ├─rlang #> │ └─vctrs #> ├─vctrs #> └─withr 3.0.0 [new][bld] #> #> Key: [new] new | [dl] download | [bld] build | [cmp] compile"},{"path":"https://r-lib.github.io/pkgdepends/dev/articles/pkgdepends-how-to.html","id":"how-to-list-all-dependencies-of-a-github-package","dir":"Articles","previous_headings":"Dependencies","what":"How to list all dependencies of a GitHub package?","title":"pkgdepends HOWTO","text":"","code":"library(pkgdepends) prop <- new_pkg_deps(\"tidyverse/ggplot2\") prop$solve() prop$get_solution()$data #> # A data frame: 28 × 38 #> ref type direct directpkg status package version license needscompilation #> #> 1 tidyv… gith… TRUE TRUE OK ggplot2 3.5.1.… MIT + … TRUE #> 2 cli stan… FALSE FALSE OK cli 3.6.2 MIT + … TRUE #> 3 color… stan… FALSE FALSE OK colors… 2.1-0 BSD_3_… TRUE #> 4 fansi stan… FALSE FALSE OK fansi 1.0.6 GPL-2 … TRUE #> 5 farver stan… FALSE FALSE OK farver 2.1.1 MIT + … TRUE #> 6 glue stan… FALSE FALSE OK glue 1.7.0 MIT + … TRUE #> 7 gtable stan… FALSE FALSE OK gtable 0.3.5 MIT + … FALSE #> 8 isoba… stan… FALSE FALSE OK isoband 0.2.7 MIT + … TRUE #> 9 label… stan… FALSE FALSE OK labeli… 0.4.3 MIT + … FALSE #> 10 lifec… stan… FALSE FALSE OK lifecy… 1.0.4 MIT + … FALSE #> # ℹ 18 more rows #> # ℹ 29 more variables: priority , md5sum , sha256 , #> # filesize , built , platform , rversion , #> # repotype , repodir , target , deps , mirror , #> # sources , remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , #> # cache_status , sysreqs_packages , sysreqs_pre_install , … #> # ℹ Use `print(n = ...)` to see more rows"},{"path":"https://r-lib.github.io/pkgdepends/dev/articles/pkgdepends-how-to.html","id":"how-to-list-all-dependencies-of-a-local-package","dir":"Articles","previous_headings":"Dependencies","what":"How to list all dependencies of a local package?","title":"pkgdepends HOWTO","text":"","code":"library(pkgdepends) prop <- new_pkg_deps(\"local::.\") prop$solve() prop$get_solution()$data #> # A data frame: 14 × 38 #> ref type direct directpkg status package version license needscompilation #> #> 1 local… local TRUE TRUE OK pkgdep… 0.7.2.… MIT + … NA #> 2 callr stan… FALSE FALSE OK callr 3.7.6 MIT + … FALSE #> 3 cli stan… FALSE FALSE OK cli 3.6.2 MIT + … TRUE #> 4 curl stan… FALSE FALSE OK curl 5.2.1 MIT + … TRUE #> 5 desc stan… FALSE FALSE OK desc 1.4.3 MIT + … FALSE #> 6 filel… stan… FALSE FALSE OK filelo… 1.0.3 MIT + … TRUE #> 7 jsonl… stan… FALSE FALSE OK jsonli… 1.8.8 MIT + … TRUE #> 8 lpSol… stan… FALSE FALSE OK lpSolve 5.6.20 LGPL-2 TRUE #> 9 pkgbu… stan… FALSE FALSE OK pkgbui… 1.4.4 MIT + … FALSE #> 10 pkgca… stan… FALSE FALSE OK pkgcac… 2.2.2 MIT + … TRUE #> 11 proce… stan… FALSE FALSE OK proces… 3.8.4 MIT + … TRUE #> 12 ps stan… FALSE FALSE OK ps 1.7.6 MIT + … TRUE #> 13 R6 stan… FALSE FALSE OK R6 2.5.1 MIT + … FALSE #> 14 zip stan… FALSE FALSE OK zip 2.3.1 MIT + … TRUE #> # ℹ 29 more variables: priority , md5sum , sha256 , #> # filesize , built , platform , rversion , #> # repotype , repodir , target , deps , mirror , #> # sources , remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , #> # cache_status , sysreqs_packages , sysreqs_pre_install , #> # sysreqs_post_install , sysreqs_install , lib_status , …"},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/articles/pkgdepends-how-to.html","id":"how-to-download-a-package-and-all-of-its-dependencies","dir":"Articles","previous_headings":"Downloads","what":"How to download a package and all of its dependencies?","title":"pkgdepends HOWTO","text":"","code":"library(pkgdepends) target_dir <- tempfile() dir.create(target_dir) prop <- new_pkg_download_proposal(\"ggplot2\", config = list(cache_dir = target_dir)) prop$resolve() prop$download() prop$get_downloads() dir(target_dir) #> ℹ Getting 28 pkgs (24.98 MB), 5 (1.61 MB) cached #> ✔ Got labeling 0.4.3 (source) (10.17 kB) #> ✔ Got lifecycle 1.0.4 (source) (107.66 kB) #> ✔ Got fansi 1.0.6 (source) (482.48 kB) #> ✔ Got pkgconfig 2.0.3 (source) (6.08 kB) #> ✔ Got farver 2.1.1 (source) (1.27 MB) #> ✔ Got utf8 1.2.4 (source) (241.08 kB) #> ✔ Got MASS 7.3-60.2 (source) (511.86 kB) #> ✔ Got mgcv 1.9-1 (source) (1.08 MB) #> ✔ Got vctrs 0.6.5 (source) (969.07 kB) #> ✔ Got gtable 0.3.5 (source) (130.23 kB) #> ✔ Got colorspace 2.1-0 (source) (2.12 MB) #> ✔ Got munsell 0.5.1 (source) (182.31 kB) #> ✔ Got nlme 3.1-164 (source) (836.83 kB) #> ✔ Got lattice 0.22-6 (source) (598.58 kB) #> ✔ Got MASS 7.3-60.2 (source) (511.86 kB) #> ✔ Got tibble 3.2.1 (source) (565.98 kB) #> ✔ Got mgcv 1.9-1 (source) (1.08 MB) #> ✔ Got isoband 0.2.7 (source) (1.59 MB) #> ✔ Got viridisLite 0.4.2 (source) (1.27 MB) #> ✔ Got scales 1.3.0 (source) (302.54 kB) #> ✔ Got nlme 3.1-164 (source) (836.83 kB) #> ✔ Got magrittr 2.0.3 (source) (267.07 kB) #> ✔ Got pillar 1.9.0 (source) (444.53 kB) #> ✔ Got Matrix 1.7-0 (source) (2.47 MB) #> ✔ Got RColorBrewer 1.1-3 (source) (11.64 kB) #> ✔ Got lattice 0.22-6 (source) (598.58 kB) #> ✔ Got ggplot2 3.5.1 (source) (3.60 MB) #> ✔ Got Matrix 1.7-0 (source) (2.47 MB) #> # A data frame: 33 × 40 #> ref type direct directpkg status package version license needscompilation #> #> 1 cli stan… FALSE FALSE OK cli 3.6.2 MIT + … TRUE #> 2 color… stan… FALSE FALSE OK colors… 2.1-0 BSD_3_… TRUE #> 3 fansi stan… FALSE FALSE OK fansi 1.0.6 GPL-2 … TRUE #> 4 farver stan… FALSE FALSE OK farver 2.1.1 MIT + … TRUE #> 5 ggplo… stan… TRUE TRUE OK ggplot2 3.5.1 MIT + … FALSE #> 6 glue stan… FALSE FALSE OK glue 1.7.0 MIT + … TRUE #> 7 gtable stan… FALSE FALSE OK gtable 0.3.5 MIT + … FALSE #> 8 isoba… stan… FALSE FALSE OK isoband 0.2.7 MIT + … TRUE #> 9 label… stan… FALSE FALSE OK labeli… 0.4.3 MIT + … FALSE #> 10 latti… stan… FALSE FALSE OK lattice 0.22-6 GPL (>… TRUE #> # ℹ 23 more rows #> # ℹ 31 more variables: priority , md5sum , sha256 , #> # filesize , built , platform , rversion , #> # repotype , repodir , target , deps , mirror , #> # sources , remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , #> # cache_status , sysreqs_packages , sysreqs_pre_install , … #> # ℹ Use `print(n = ...)` to see more rows #> [1] \"src\""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/articles/pkgdepends-how-to.html","id":"how-to-install-a-package-into-a-new-library","dir":"Articles","previous_headings":"Installation","what":"How to install a package into a new library?","title":"pkgdepends HOWTO","text":"","code":"library(pkgdepends) dir.create(new_lib <- tempfile()) prop <- new_pkg_installation_proposal(\"pkgconfig\", config = list(library = new_lib)) prop$solve() prop$download() prop$install() lib_status(new_lib) #> ℹ No downloads are needed, 1 pkg (6.08 kB) is cached #> ℹ Building pkgconfig 2.0.3 #> ✔ Built pkgconfig 2.0.3 (863ms) #> ✔ Installed pkgconfig 2.0.3 (1s) #> ✔ Summary: 1 new in 1.9s #> # A data frame: 1 × 31 #> library package title version license imports suggests needscompilation #> #> 1 /tmp/RtmpaN6g… pkgcon… Priv… 2.0.3 MIT + … utils covr, t… FALSE #> # ℹ 23 more variables: repository , built , remotetype , #> # remotepkgref , remoteref , remoterepos , #> # remotepkgplatform , remotesha , depends , linkingto , #> # enhances , md5sum , platform , priority , #> # biocviews , sysreqs , ref , type , status , #> # rversion , sources , repotype , deps "},{"path":"https://r-lib.github.io/pkgdepends/dev/articles/pkgdepends-how-to.html","id":"how-to-update-a-package","dir":"Articles","previous_headings":"Installation","what":"How to update a package?","title":"pkgdepends HOWTO","text":"Install older version first. Now update.","code":"library(pkgdepends) dir.create(new_lib <- tempfile()) config <- list(library = new_lib) prop <- new_pkg_installation_proposal(\"cran/pkgconfig@2.0.2\", config = config) prop$solve() prop$download() prop$install() lib_status(new_lib) #> ℹ No downloads are needed, 1 pkg is cached #> ✔ Got pkgconfig 2.0.2 (source) (13.22 kB) #> ℹ Packaging pkgconfig 2.0.2 #> ✔ Packaged pkgconfig 2.0.2 (458ms) #> ℹ Building pkgconfig 2.0.2 #> ✔ Built pkgconfig 2.0.2 (860ms) #> ✔ Installed pkgconfig 2.0.2 (github::cran/pkgconfig@d892880) (17ms) #> ✔ Summary: 1 new in 877ms #> # A data frame: 1 × 32 #> library package title version license imports suggests needscompilation #> #> 1 /tmp/RtmpaN6g… pkgcon… Priv… 2.0.2 MIT + … utils covr, t… FALSE #> # ℹ 24 more variables: repository , built , remotetype , #> # remotehost , remoterepo , remoteusername , #> # remotepkgref , remoteref , remotesha , depends , #> # linkingto , enhances , md5sum , platform , #> # priority , biocviews , sysreqs , ref , type , #> # status , rversion , sources , repotype , deps library(pkgdepends) prop2 <- new_pkg_installation_proposal(\"pkgconfig\", config = config) prop2$set_solve_policy(\"upgrade\") prop2$solve() prop2$download() prop2$install() lib_status(new_lib) #> ℹ No downloads are needed, 1 pkg (6.08 kB) is cached #> ℹ Building pkgconfig 2.0.3 #> ✔ Built pkgconfig 2.0.3 (862ms) #> ✔ Installed pkgconfig 2.0.3 (1s) #> ✔ Summary: 1 updated in 1.9s #> # A data frame: 1 × 31 #> library package title version license imports suggests needscompilation #> #> 1 /tmp/RtmpaN6g… pkgcon… Priv… 2.0.3 MIT + … utils covr, t… FALSE #> # ℹ 23 more variables: repository , built , remotetype , #> # remotepkgref , remoteref , remoterepos , #> # remotepkgplatform , remotesha , depends , linkingto , #> # enhances , md5sum , platform , priority , #> # biocviews , sysreqs , ref , type , status , #> # rversion , sources , repotype , deps "},{"path":"https://r-lib.github.io/pkgdepends/dev/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Gábor Csárdi. Author, maintainer. . Copyright holder, funder.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Csárdi G (2024). pkgdepends: Package Dependency Resolution Downloads. R package version 0.7.2.9000, https://github.com/r-lib/pkgdepends, https://r-lib.github.io/pkgdepends/.","code":"@Manual{, title = {pkgdepends: Package Dependency Resolution and Downloads}, author = {Gábor Csárdi}, year = {2024}, note = {R package version 0.7.2.9000, https://github.com/r-lib/pkgdepends}, url = {https://r-lib.github.io/pkgdepends/}, }"},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"pkgdepends","dir":"","previous_headings":"","what":"Package Dependency Resolution and Downloads","title":"Package Dependency Resolution and Downloads","text":"Package Dependency Resolution, Downloads Installation pkgdepends toolkit package dependencies, downloads installations, used packages. looking package manager, see pak.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"features","dir":"","previous_headings":"","what":"Features","title":"Package Dependency Resolution and Downloads","text":"Look package dependencies recursively. Visualize package dependencies. Download packages dependencies. Install downloaded packages. Includes dependency solver find consistent set dependencies. Supports CRAN Bioconductor packages automatically. Supports packages GitHub GitLab. Supports packages git repositories. Supports package bundles files web. Supports local package file trees. Supports Remotes entry DESCRIPTION file. Caches metadata downloaded packages via pkgcache Performs downloads HTTP queries concurrently. Builds installs packages parallel.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"install","dir":"","previous_headings":"","what":"Install","title":"Package Dependency Resolution and Downloads","text":"Install package : need development version, install ","code":"install.packages(\"pkgdepends\") pak::pak(\"r-lib/pkgdepends\")"},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"usage","dir":"","previous_headings":"","what":"Usage","title":"Package Dependency Resolution and Downloads","text":"","code":"library(pkgdepends)"},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"package-references","dir":"","previous_headings":"","what":"Package references","title":"Package Dependency Resolution and Downloads","text":"package reference (ref) specifies location R package can obtained . Examples: See “Package references” details.","code":"devtools cran::devtools bioc::Biobase r-lib/pkgdepends https://github.com/r-lib/pkgdepends local::~/works/shiny"},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"package-dependencies","dir":"","previous_headings":"","what":"Package dependencies","title":"Package Dependency Resolution and Downloads","text":"Dependencies development version cli package: See pkg_deps class details.","code":"pd <- new_pkg_deps(\"r-lib/pkgcache\") pd$solve() pd$draw() ## ✔ Updated metadata database: 2.91 MB in 8 files. ## ✔ Updating metadata database ... done ## r-lib/pkgcache 2.2.2.9000 [new][bld][cmp][dl] (unknown size) ## ├─callr 3.7.6 [new][bld][dl] (104.36 kB) ## │ ├─processx 3.8.4 [new][bld][cmp][dl] (163.98 kB) ## │ │ ├─ps 1.7.6 [new][bld][cmp][dl] (129.49 kB) ## │ │ └─R6 2.5.1 [new][bld][dl] (63.42 kB) ## │ └─R6 ## ├─cli 3.6.2 [new][bld][cmp][dl] (569.77 kB) ## ├─curl 5.2.1 [new][bld][cmp][dl] (716.70 kB) ## ├─filelock 1.0.3 [new][bld][cmp][dl] (15.44 kB) ## ├─jsonlite 1.8.8 [new][bld][cmp][dl] (1.05 MB) ## ├─processx ## └─R6 ## ## Key: [new] new | [dl] download | [bld] build | [cmp] compile"},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"package-downloads","dir":"","previous_headings":"","what":"Package downloads","title":"Package Dependency Resolution and Downloads","text":"Downloading dependencies package: See pkg_download_proposal class details.","code":"pdl <- new_pkg_download_proposal(\"r-lib/cli\") pdl$resolve() pdl$download() ## ℹ Getting 1 pkg with unknown size ## ✔ Got cli 3.6.2.9000 (source) (768.82 kB)"},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"package-installation","dir":"","previous_headings":"","what":"Package installation","title":"Package Dependency Resolution and Downloads","text":"Installing updating set package:","code":"lib <- tempfile() dir.create(lib) pdi <- new_pkg_installation_proposal( \"r-lib/cli\", config = list(library = lib) ) pdi$solve() pdi$download() pdi$install() ## ℹ Getting 1 pkg with unknown size ## ✔ Cached copy of cli 3.6.2.9000 (source) is the latest build ## ℹ Packaging cli 3.6.2.9000 ## ✔ Packaged cli 3.6.2.9000 (1.2s) ## ℹ Building cli 3.6.2.9000 ## ✔ Built cli 3.6.2.9000 (7.5s) ## ✔ Installed cli 3.6.2.9000 (github::r-lib/cli@71fd2a5) (1s) ## ✔ Summary: 1 new in 8.6s"},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"dependency-resolution","dir":"","previous_headings":"","what":"Dependency resolution","title":"Package Dependency Resolution and Downloads","text":"pkg_deps, pkg_download_proposal pkg_installation_proposal resolve dependencies recursively, obtain information packages needed specified package references. See “Dependency resolution” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"the-dependency-solver","dir":"","previous_headings":"","what":"The dependency solver","title":"Package Dependency Resolution and Downloads","text":"dependency solver takes resolution information, works exact versions package must installed, version requirements satisfied. See “dependency solver” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"installation-plans","dir":"","previous_headings":"","what":"Installation plans","title":"Package Dependency Resolution and Downloads","text":"pkg_installation_proposal can create installation plans, also install . also possible import installation plans created tools. See “Installation plans” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"configuration","dir":"","previous_headings":"","what":"Configuration","title":"Package Dependency Resolution and Downloads","text":"details pkg_deps, pkg_download_proposal pkg_installation_proposal can tuned list configuration options. See “Configuration” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"related","dir":"","previous_headings":"","what":"Related","title":"Package Dependency Resolution and Downloads","text":"pak – R package manager pkgcache – Metadata package cache devtools – Tools R package developers","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Package Dependency Resolution and Downloads","text":"Please note pkgdepends project released Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"license","dir":"","previous_headings":"","what":"License","title":"Package Dependency Resolution and Downloads","text":"MIT (c) RStudio","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/as_pkg_dependencies.html","id":null,"dir":"Reference","previous_headings":"","what":"Shorthands for dependency specifications — as_pkg_dependencies","title":"Shorthands for dependency specifications — as_pkg_dependencies","text":"Shorthands dependency specifications","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/as_pkg_dependencies.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Shorthands for dependency specifications — as_pkg_dependencies","text":"","code":"as_pkg_dependencies(deps)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/as_pkg_dependencies.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Shorthands for dependency specifications — as_pkg_dependencies","text":"deps See .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/as_pkg_dependencies.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Shorthands for dependency specifications — as_pkg_dependencies","text":"named list two character vectors: direct, indirect, dependency types use direct installations dependent packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/as_pkg_dependencies.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Shorthands for dependency specifications — as_pkg_dependencies","text":"R packages may various types dependencies, see Writing R Extensions. pkgdepends groups dependencies three groups: hard dependencies: \"Depends\", \"Imports\", \"LinkingTo\", soft dependencies: \"Suggests\" \"Enhances\", extra dependencies, see . pkgdepends supports concise ways specifying types dependencies package installed. similar utils::install.packages() interprets dependencies argument. typically use one values: NA \"hard\" install package required dependencies, TRUE install required dependencies, plus optional development dependencies. need flexibility, full description possible values deps argument : TRUE: means hard dependencies plus Suggests direct installations, hard dependencies dependent packages. FALSE: dependencies installed . NA (atomic type, NA_character_, etc. well): hard dependencies installed. See pkg_dep_types_hard(). list two entries named direct indirect, taken requested dependency types, direct installations dependent packages. character vector, taken dependency types direct installations, hard dependencies used dependent packages. \"hard\" included value list element, replaced hard dependency types. \"soft\" \"\" included, replaced hard soft dependency.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/as_pkg_dependencies.html","id":"extra-dependencies","dir":"Reference","previous_headings":"","what":"Extra dependencies","title":"Shorthands for dependency specifications — as_pkg_dependencies","text":"pkgdepends supports extra dependency types direct installations CRAN-like repositories. specified Config/Needs/ prefix DESCRIPTION can contain package references, separated commas. example can specify packages needed pkgdown website package: use dependency types, need specify deps argument pkgdepends functions. Note Config/Needs/* fields currently used CRAN packages, packages CRAN-like repositories general. Usually specify Config/Needs/* dependency type installed together \"hard\" \"\", install hard soft dependencies well.","code":"Config/Needs/website: r-lib/pkgdown"},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":null,"dir":"Reference","previous_headings":"","what":"Package configuration (internals) — config","title":"Package configuration (internals) — config","text":"Internal machinery pkgdepends configuration. See current_config() machinery can used define configuration package. standalone file can copied another package without changes.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"config"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Package configuration (internals) — config","text":"config list functions closure. can use two ways. one set configuration values package, include .onLoad(): _multiple _ sets configuration values (e.g. one per object), include function like package: call current_config() every time need create new set configuration values.","code":"conf <- config$new(\"prefix\") conf$add(\"myenrry\", \"string\", \"default-value\") ... conf$lock() current_config <- function() { conf <- config$new(\"prefix\") conf$add(\"myentry\", \"string\", \"default-value\") ... conf$lock() conf }"},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"config-entry-or-entry-","dir":"Reference","previous_headings":"","what":"Config entry (or entry)","title":"Package configuration (internals) — config","text":"single configurable entity. config entry name. name always standardized replacing dashes underscores. config entry type: string, flag, user defined type. can also default value. Examples: URL API, can string. Path directory use caching, either string, NULL (string_or_null type). Number processor cores use, positive integer (count type).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"configuration-or-config-","dir":"Reference","previous_headings":"","what":"Configuration (or config)","title":"Package configuration (internals) — config","text":"set configuration entries. config$new() returns configuration. configuration can extended adding new entries , locked.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"r-option-or-option-","dir":"Reference","previous_headings":"","what":"R option (or option)","title":"Package configuration (internals) — config","text":"option set base::options() queried base::getOption().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"configuration-prefix","dir":"Reference","previous_headings":"","what":"Configuration prefix","title":"Package configuration (internals) — config","text":"prefix typically package specific, used config entries package, avoid environment variable option name clashes packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"config-entry-type","dir":"Reference","previous_headings":"","what":"Config entry type","title":"Package configuration (internals) — config","text":"defines allowed values configuration entries, also string environment variable translated value entry. See list builtin types . can also define new types.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"string","dir":"Reference","previous_headings":"","what":"string","title":"Package configuration (internals) — config","text":"String scalar, NA allowed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"count","dir":"Reference","previous_headings":"","what":"count","title":"Package configuration (internals) — config","text":"Non-negative integer, NA allowed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"flag","dir":"Reference","previous_headings":"","what":"flag","title":"Package configuration (internals) — config","text":"Logical scalar, NA allowed. environment variables TRUE values : yes, true, 1 , FALSE values : , false, 0, . (case insensitive.)","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"string-or-null","dir":"Reference","previous_headings":"","what":"string_or_null","title":"Package configuration (internals) — config","text":"String NULL. NA allowed. environment variables string NULL means R NULL value.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"character","dir":"Reference","previous_headings":"","what":"character","title":"Package configuration (internals) — config","text":"Character vector without NA values. environment variables entries separated semicolon.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"custom","dir":"Reference","previous_headings":"","what":"custom","title":"Package configuration (internals) — config","text":"Custom type. env_decode function must specified config entry type, otherwise error throw corresponding environment variable set.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"config-onload-hook-pretty-printing-configuration","dir":"Reference","previous_headings":"","what":"config$onload_hook(): pretty-printing configuration","title":"Package configuration (internals) — config","text":"Call config$onload_hook() package's .onLoad() function want define S3 methods print package configuration nicer.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"config$onload_hook()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"config-new-create-a-new-configuration","dir":"Reference","previous_headings":"","what":"config$new(): Create a new configuration","title":"Package configuration (internals) — config","text":"Typically new() called outside functions package, config object created install time.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-1","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf <- config$new(prefix = utils::packageName(parent.frame()))"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"prefix: prefix config entry names. environment variables converted uppercase, dots converted underscores. default prefix name calling package. underscore separator used prefix entry name environment variable names. dot separator used R option names.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"new() returns config object, list containing configuration data functions (methods) query change .","code":"conf <- config$new()"},{"path":[]},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-2","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$add( name, type = conf$types, default = NULL, check = type[1], env_decode = type[1] )"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-1","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"name: name entry. type: type entry, string. default: default value config entry. function, called generate default, time config entry's value queried. check: function, called check value entry. function return TRUE successful FALSE unsuccessful checks. NULL, check performed. can also name type, default check type performed, . env_decode: function, used decode value entry environment variable, .e. string. can also name type, env_decode() function type used decoding.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-1","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"configuration, invisibly.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-3","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$get(name)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-2","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"name: name entry.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-2","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"Value entry. entry set via conf$set() conf$update(), value returned. Otherwise, entry set via R option (see base::getOption()), value returned. config prefix used get option name, dot separator. .e. entry called 'foo', prefix 'pkg', pkg.foo option used. entry check function, called returning. Otherwise, entry set via environment variable, value returned. config prefix used get name environment variable. addition, dots replaced underscores name converted uppercase. .e. entry called 'foo.bar', prefix 'pkg', 'PKG_FOO_BAR` environment variable used. Otherwise, entry default value, returned. default value might function, case function called produce default value. entry check function, called returning.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"conf-set-set-the-value-of-a-configuration-entry","dir":"Reference","previous_headings":"","what":"conf$set(): set the value of a configuration entry","title":"Package configuration (internals) — config","text":"$set() config entry, value used $set() returned $get(), without consulting R options environment variables.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-4","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$set(name, value)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-3","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"name: name entry. value: value entry. entry check function, called .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-3","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"configuration, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"-conf-unset-unset-a-configuration-entry","dir":"Reference","previous_headings":"","what":"$conf$unset(): unset a configuration entry","title":"Package configuration (internals) — config","text":"Note function unset R options environment variables. merely removes value assigned $set() $update().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-5","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$unset(name)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-4","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"name: name entry.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-4","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"configuration, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"cond-update-update-the-values-of-configuration-entries","dir":"Reference","previous_headings":"","what":"cond$update(): update the values of configuration entries","title":"Package configuration (internals) — config","text":"can use method set()/$unset()multiple config entries.NULLvalues innew` unset corresponding entry.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-6","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$update(new)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-5","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"new: named list, names config entry names values corresponding config entry values. NULL values unset config entry. list processed sequentially, duplicates latest values effect. (every value checked check function, .)","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-5","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"configuration, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"conf-list-query-the-names-of-all-config-entries","dir":"Reference","previous_headings":"","what":"conf$list(): query the names of all config entries","title":"Package configuration (internals) — config","text":"Note order non-deterministic currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-7","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$list()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-6","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"Character vector.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-8","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$exists(name)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-6","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"name: name entry.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-7","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"Logical scalar, TRUE entry exists configuration, FALSE otherwise. Note TRUE mean value entry set.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"conf-lock-lock-the-configuration","dir":"Reference","previous_headings":"","what":"conf$lock(): lock the configuration","title":"Package configuration (internals) — config","text":"configuration locked, entries can added .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-9","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$lock()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-8","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"configuration, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"conf-fix-fix-the-value-of-a-single-configuration-entry","dir":"Reference","previous_headings":"","what":"conf$fix(): fix the value of a single configuration entry","title":"Package configuration (internals) — config","text":"currently $set() value fixed changed . can fix entry without setting value, case R options environment variables can still used update .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-10","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$unset(name)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-7","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"name: name entry.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-9","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"configuration, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"conf-add-type-add-a-new-config-entry-type-to-a-configuration","dir":"Reference","previous_headings":"","what":"conf$add_type(): add a new config entry type to a configuration","title":"Package configuration (internals) — config","text":"new type can used conf$add() calls.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-11","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$add_type(type_name, check, env_decode)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-8","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"type_name: type name. check: default check function type. Use NULL checks. env_decode: function use decode value type environment variable (.e. string).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-10","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"configuration, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/default_platforms.html","id":null,"dir":"Reference","previous_headings":"","what":"R platforms — current_r_platform","title":"R platforms — current_r_platform","text":"default_platfoms() returns default platforms current R session. typically consist detected platform current R session, \"source\", source packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/default_platforms.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R platforms — current_r_platform","text":"","code":"current_r_platform() default_platforms()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/default_platforms.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"R platforms — current_r_platform","text":"current_r_platform() returns string, name current platform. default_platforms() returns character vector platform names.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/default_platforms.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"R platforms — current_r_platform","text":"current_r_platform() detects platform current R version. default pkgdepends works source packages binary packages current platform. can change , see 'Configuration'. following platform names can configured returned current_r_platform() default_platforms(): \"source\" source packages, platform string like R.version$platform, Linux name version distribution also included. Examples: x86_64-apple-darwin17.0: macOS High Sierra. aarch64-apple-darwin20: macOS Big Sur arm64. x86_64-w64-mingw32: 64 bit Windows. i386-w64-mingw32: 32 bit Windows. i386+x86_64-w64-mingw32: 64 bit + 32 bit Windows. i386-pc-solaris2.10: 32 bit Solaris. (broken 64 Solaris builds might platform string, unfortunately.) x86_64-pc-linux-gnu-debian-10: Debian Linux 10 x86_64. x86_64-pc-linux-musl-alpine-3.14.1: Alpine Linux. x86_64-pc-linux-gnu-unknown: Unknown Linux Distribution x86_64. s390x-ibm-linux-gnu-ubuntu-20.04: Ubuntu Linux 20.04 S390x. amd64-portbld-freebsd12.1: FreeBSD 12.1 x86_64. addition, following platform names can used configure pkgdepends: \"macos\" macOS binaries appropriate R versions pkgdepends working (defaulting version current session), defined CRAN binaries. E.g. R 3.5.0 macOS binaries built macOS El Capitan. \"windows\" Windows binaries default CRAN architecture. currently Windows Vista supported R versions, might change future. actual binary packages repository might support 32 bit 64 builds, one . practice 32-bit packages rare. CRAN builds including R 4.1 architectures, R 4.2 64 bit . \"windows\" alias i386+x86_64-w64-mingw32 currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/default_platforms.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"R platforms — current_r_platform","text":"","code":"current_r_platform() #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" default_platforms() #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" \"source\""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git-protocol.html","id":null,"dir":"Reference","previous_headings":"","what":"git protocol notes, for developers — git-protocol","title":"git protocol notes, for developers — git-protocol","text":"Assumptions, might relaxed checked later: server must speak smart protocol, version 1 2. (Although added functions specifically dumb protocol, pretty limited.) use HTTP transport, SSH. server shallow capability. server filter capability protocol version 2. SHA-1 hashing supported.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git-protocol.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"git protocol notes, for developers — git-protocol","text":"Improvements needed: DONE Tests. (Can always .) DONE Use async HTTP. DONE Support packfiles deltas. (ofs-delta objects still supported.) DONE Optionally send authorization. Already possibly URL. DONE Better error messages. Better errors non-existing user, repository, ref, PR, etc. Optional improvements: Support ofs-delta objects packfiles. necessarily, unless send capability, server sending ofs-delta objects. Make unpacking faster. fast currently, bit arithmetic R. already faster tar.gz + uncompress download GitHub, really needed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git-protocol.html","id":"docs-and-other-helpful-links-","dir":"Reference","previous_headings":"","what":"Docs and other helpful links:","title":"git protocol notes, for developers — git-protocol","text":"https://github.com/git/git/blob/master/Documentation/gitprotocol-common.txt https://github.com/git/git/blob/master/Documentation/gitprotocol-pack.txt https://github.com/git/git/blob/master/Documentation/gitprotocol-v2.txt https://github.com/calebsander/git-internals/blob/part2/src/main.rs https://dev./calebsander/git-internals-part-1--git-object-model-474m","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_download_file.html","id":null,"dir":"Reference","previous_headings":"","what":"Download a blob for a remote git repository — git_download_file","title":"Download a blob for a remote git repository — git_download_file","text":"Download blob remote git repository","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_download_file.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Download a blob for a remote git repository — git_download_file","text":"","code":"git_download_file(url, sha, output = sha)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_download_file.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Download a blob for a remote git repository — git_download_file","text":"url Repository URL, e.g. https://github.com/r-lib/pak.git. might include authentication information, e.g. GitHub token. sha SHA hash blob. output Path blob written. directory created exist.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_download_file.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Download a blob for a remote git repository — git_download_file","text":"list corresponds git packfile entry, invisibly. entries: type (always \"blob\"), object (raw object, blob ), size, packed_size, hash.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_download_file.html","id":"examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Download a blob for a remote git repository — git_download_file","text":"Download DESCRIPTION file GitHub:","code":"pak_repo <- \"https://github.com/r-lib/pak.git\" fls <- git_list_files(pak_repo, \"HEAD\") git_download_file( pak_repo, fls$files$hash[fls$files$path == \"DESCRIPTION\"], output = tmp <- tempfile() ) readLines(tmp)[1:5] #> [1] \"Package: pak\" #> [2] \"Version: 0.3.1.9999\" #> [3] \"Title: Another Approach to Package Installation\" #> [4] \"Description: The goal of 'pak' is to make package installation faster and\" #> [5] \" more reliable. In particular, it performs all HTTP operations in parallel,\""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_fetch.html","id":null,"dir":"Reference","previous_headings":"","what":"Get a packfile for an object from a remote git repository — git_fetch","title":"Get a packfile for an object from a remote git repository — git_fetch","text":"Get packfile object remote git repository","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_fetch.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get a packfile for an object from a remote git repository — git_fetch","text":"","code":"git_fetch(url, sha, blobs = FALSE)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_fetch.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get a packfile for an object from a remote git repository — git_fetch","text":"url Repository URL, e.g. https://github.com/r-lib/pak.git. might include authentication information, e.g. GitHub token. sha SHA object get. blobs Whether want download blobs well . still always requesting shallow (depth = 1) clone.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_fetch.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get a packfile for an object from a remote git repository — git_fetch","text":"list git objects. element entries: type: commit, tree, blob tag. object: object . character scalar commits, data frame trees, columns: type, mode, path, hash, raw vector blobs, raw vector tags. (probably better .)","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_fetch.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Get a packfile for an object from a remote git repository — git_fetch","text":"uses filter blob:none, extra blobs downloaded, trees.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_fetch.html","id":"examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get a packfile for an object from a remote git repository — git_fetch","text":"","code":"ft <- git_fetch( \"https://github.com/r-lib/filelock.git\", \"9fdba75a62facaa3e818902f58891166e45eabe9\" ) ft #> [[1]] #> [[1]]$type #> [1] \"commit\" #> #> [[1]]$object #> [1] \"tree f92fab4f8594bd2e6c10f6f3e5dd44e556d7bb7e\\nparent 7c5389719fa50e1827195771ac07c01d44ababa1\\nauthor Gábor Csárdi 1538733728 +0100\\ncommitter Gábor Csárdi 1538733728 +0100\\n\\nFix spelling\\n\" #> #> [[1]]$size #> [1] 239 #> #> 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files in a remote git repository — git_list_files","text":"","code":"git_list_files(url, ref = \"HEAD\")"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_files.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"List files in a remote git repository — git_list_files","text":"url Repository URL, e.g. https://github.com/r-lib/pak.git. might include authentication information, e.g. GitHub token. ref Either SHA ref name. may also branch name without refs/heads prefix, partial (unique) SHA least seven hexadecimal digits. 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15 Makefile #> 16 NAMESPACE #> 17 NEWS.md #> 18 R #> 19 R/aaa-rstudio-detect.R #> 20 R/build-pak-binary.R #> 21 R/cache.R #> 22 R/compat-vctrs.R #> 23 R/confirmation.R #> 24 R/cran-install-order.R #> 25 R/default-cran-mirror.R #> 26 R/deps-explain.R #> 27 R/dev-mode.R #> 28 R/docs.R #> 29 R/embed-ca-certs.R #> 30 R/embed-lib.R #> 31 R/errors.R #> 32 R/extra.R #> 33 R/formatted.R #> 34 R/global-handler.R #> 35 R/json.R #> 36 R/library.R #> 37 R/local.R #> 38 R/lockfile.R #> 39 R/name-check.R #> 40 R/onload.R #> 41 R/package.R #> 42 R/pak-cleanup.R #> 43 R/pak-install.R #> 44 R/pak-update.R #> 45 R/pak.R #> 46 R/print.R #> 47 R/private-lib.R #> 48 R/push-packages.R #> 49 R/repo.R #> 50 R/rstudio-detect.R #> 51 R/safe-cran-install.R #> 52 R/search.R #> 53 R/subprocess.R #> 54 R/system-requirements.R #> 55 R/terminate.R #> 56 R/unload.R #> 57 R/utils.R #> 58 R/warn-loaded.R #> 59 README.Rmd #> 60 README.md #> 61 _pkgdown.yml #> 62 cleanup #> 63 codecov.yml #> 64 configure #> 65 configure.win #> 66 data #> 67 data/pak_sitrep_data.R #> 68 inst #> 69 inst/WORDLIST #> 70 inst/header.md #> 71 inst/tools #> 72 inst/tools/pkg_1.0.0.tgz #> 73 inst/tools/xxx #> 74 inst/tools/xxx.bz2 #> 75 inst/tools/xxx.gz #> 76 inst/tools/xxx.tar.gz #> 77 inst/tools/xxx.xz #> 78 inst/tools/xxx.zip #> 79 man #> 80 man/cache.Rd #> 81 man/chunks #> 82 man/chunks/FAQ.Rmd #> 83 man/chunks/features.Rmd #> 84 man/chunks/install.Rmd #> 85 man/chunks/tldr.Rmd #> 86 man/faq.Rd #> 87 man/features.Rd #> 88 man/figures #> 89 man/figures/cran-dark.svg #> 90 man/figures/cran.svg #> 91 man/figures/deps-dark.svg #> 92 man/figures/deps.svg #> 93 man/figures/explain-dark.svg #> 94 man/figures/explain.svg #> 95 man/figures/gh-dark.svg #> 96 man/figures/gh.svg #> 97 man/figures/local-dark.svg #> 98 man/figures/local.svg #> 99 man/figures/tldr-cran.svg #> 100 man/get-started.Rd #> 101 man/handle_package_not_found.Rd #> 102 man/install.Rd #> 103 man/lib_status.Rd #> 104 man/local_deps.Rd #> 105 man/local_deps_explain.Rd #> 106 man/local_install.Rd #> 107 man/local_install_deps.Rd #> 108 man/local_install_dev_deps.Rd #> 109 man/local_package_trees.Rd #> 110 man/local_system_requirements.Rd #> 111 man/lockfile_create.Rd #> 112 man/lockfile_install.Rd #> 113 man/macros #> 114 man/macros/eval.Rd #> 115 man/metadata.Rd #> 116 man/package-dependency-types.Rd #> 117 man/pak-config.Rd #> 118 man/pak.Rd #> 119 man/pak_cleanup.Rd #> 120 man/pak_install_extra.Rd #> 121 man/pak_package_sources.Rd #> 122 man/pak_setup.Rd #> 123 man/pak_sitrep.Rd #> 124 man/pak_solver.Rd #> 125 man/pak_update.Rd #> 126 man/pkg_deps.Rd #> 127 man/pkg_deps_explain.Rd #> 128 man/pkg_deps_tree.Rd #> 129 man/pkg_download.Rd #> 130 man/pkg_history.Rd #> 131 man/pkg_install.Rd #> 132 man/pkg_name_check.Rd #> 133 man/pkg_remove.Rd #> 134 man/pkg_search.Rd #> 135 man/pkg_status.Rd #> 136 man/repo_add.Rd #> 137 man/repo_get.Rd #> 138 man/repo_status.Rd #> 139 man/roxygen #> 140 man/roxygen/meta.R #> 141 pak.Rproj #> 142 tests #> 143 tests/testthat.R #> 144 tests/testthat #> 145 tests/testthat/_snaps #> 146 tests/testthat/_snaps/print.md #> 147 tests/testthat/helpers.R #> 148 tests/testthat/setup.R #> 149 tests/testthat/test-bundle.R #> 150 tests/testthat/test-create-pak-repo.R #> 151 tests/testthat/test-platform.R #> 152 tests/testthat/test-print.R #> 153 tests/testthat/test-private-lib.R #> 154 tests/testthat/test-repo.R #> 155 tests/testthat/test-subprocess.R #> 156 tests/testthat/test-system-requirements.R #> 157 tests/testthat/test-ui.R #> 158 tests/testthat/test-utils.R #> 159 tools #> 160 tools/build #> 161 tools/build/linux #> 162 tools/build/linux/Dockerfile #> 163 tools/build/linux/Dockerfile-builder #> 164 tools/build/linux/Makefile #> 165 tools/build/linux/Makevars-builder #> 166 tools/build/macos #> 167 tools/build/macos/.gitignore #> 168 tools/build/macos/Makefile #> 169 tools/build/macos/Makevars-curl.in #> 170 tools/build/macos/download.sh #> 171 tools/build/windows #> 172 tools/build/windows/.gitignore #> 173 tools/build/windows/Makefile #> 174 tools/dynamic-help.R #> 175 vignettes #> 176 vignettes/internals.Rmd"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_refs.html","id":null,"dir":"Reference","previous_headings":"","what":"List references in a remote git repository — git_list_refs","title":"List references in a remote git repository — git_list_refs","text":"List references remote git repository","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_refs.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"List references in a remote git repository — git_list_refs","text":"","code":"git_list_refs(url, prefixes = NULL)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_refs.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"List references in a remote git repository — git_list_refs","text":"url Repository URL, e.g. https://github.com/r-lib/pak.git. might include authentication information, e.g. GitHub token. prefixes NULL, references one prefixes prefix, listed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_refs.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"List references in a remote git repository — git_list_refs","text":"list entries: refs caps. caps character vector capabilities advertised server. refs data frame git refs, columns ref hash.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_refs.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"List references in a remote git repository — git_list_refs","text":"Branches references named refs/heads/, e.g. refs/heads/main. Tags references named refs/tags/, e.g. refs/tags/v1.0.2. GitHub pull requests references named refs/pull//head, e.g. refs/pull/37/head. open pull requests refs/pull//merge reference well, branch pull request merged. special reference called HEAD. points default branch GitHub.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_refs.html","id":"examples","dir":"Reference","previous_headings":"","what":"Examples","title":"List references in a remote git repository — git_list_refs","text":"List references certain prefix: Various services:","code":"git_list_refs(\"https://github.com/r-lib/filelock.git\") #> $refs #> ref #> 1 HEAD #> 2 refs/heads/cran-1-0-2 #> 3 refs/heads/fix/testthat-error-parallel #> 4 refs/heads/gh-pages #> 5 refs/heads/main #> 6 refs/heads/refcounting #> 7 refs/pull/14/head #> 8 refs/pull/37/head #> 9 refs/pull/37/merge #> 10 refs/pull/38/head #> 11 refs/pull/40/head #> 12 refs/tags/v1.0.2 #> hash #> 1 0331c49c0b17845468b5f3e2da75680475bc9989 #> 2 dfc615b14dfc030df3f44bd377e752728f76df3d #> 3 6f4b4bfcc1d3442d63496c7640984c0d9570a05a #> 4 2956fbdcbab65b75e3347048a9dc18b15fe377d2 #> 5 0331c49c0b17845468b5f3e2da75680475bc9989 #> 6 48e5bbe0e031897c7f0e194edbf6897f813fbaee #> 7 48e5bbe0e031897c7f0e194edbf6897f813fbaee #> 8 6f4b4bfcc1d3442d63496c7640984c0d9570a05a #> 9 74b253543f6d2e7213a8174ebbe8e397b9cc866b #> 10 c7e58188a55844e6e75cd38cf81388c3452b1259 #> 11 10421f0b7117244002d377d7a9699c2742abdfcc #> 12 9fdba75a62facaa3e818902f58891166e45eabe9 #> #> $caps #> [1] \"multi_ack\" \"thin-pack\" #> [3] \"side-band\" \"side-band-64k\" #> [5] \"ofs-delta\" \"shallow\" #> [7] \"deepen-since\" \"deepen-not\" #> [9] \"deepen-relative\" \"no-progress\" #> [11] \"include-tag\" \"multi_ack_detailed\" #> [13] \"allow-tip-sha1-in-want\" \"allow-reachable-sha1-in-want\" #> [15] \"no-done\" \"symref=HEAD:refs/heads/main\" #> [17] \"filter\" \"object-format=sha1\" #> [19] \"agent=git/github-g8119c27a9d8d\" git_list_refs(\"https://github.com/r-lib/filelock.git\", \"refs/heads/main\") #> $refs #> ref hash #> 1 refs/heads/main 211dde89c4974b295aa02c5c77b5570ead0fc458 #> #> $caps #> [1] \"version 2\" \"agent=git/github-1c5ee477c782\" #> [3] \"ls-refs=unborn\" \"fetch=shallow wait-for-done filter\" #> [5] \"server-option\" \"object-format=sha1\" git_list_refs(\"https://gitlab.com/Linaro/tuxmake.git\", \"HEAD\") #> $refs #> ref hash #> 1 HEAD 9441c1f6ae68148882e9d15ab2d6b3008f4c2c19 #> #> $caps #> [1] \"version 2\" \"agent=git/2.40.0.gl1\" #> [3] \"ls-refs=unborn\" \"fetch=shallow wait-for-done filter\" #> [5] \"server-option\" \"object-format=sha1\" #> [7] \"object-info\" git_list_refs(\"https://bitbucket.org/gaborcsardi/cli.git\") #> $refs #> ref #> 1 HEAD #> 2 refs/heads/ask #> 3 refs/heads/cran-3.0.0 #> 4 refs/heads/cran/v3.0.1 #> 5 refs/heads/feature/cli-capabilities #> 6 refs/heads/feature/cli-condition-width #> 7 refs/heads/feature/format-error-options #> 8 refs/heads/feature/rstudio-job #> 9 refs/heads/feature/span-bullets #> 10 refs/heads/feature/table #> 11 refs/heads/fix/pkgdown-2.0.0 #> 12 refs/heads/gh-pages #> 13 refs/heads/main #> 14 refs/heads/use-glue-literal-argument #> 15 refs/tags/v1.0.1 #> 16 refs/tags/v1.1.0 #> 17 refs/tags/v1.1.0-pre #> 18 refs/tags/v2.0.0 #> 19 refs/tags/v2.0.1 #> 20 refs/tags/v2.0.2 #> 21 refs/tags/v2.1.0 #> 22 refs/tags/v2.2.0 #> 23 refs/tags/v2.3.0 #> 24 refs/tags/v2.3.1 #> 25 refs/tags/v2.4.0 #> 26 refs/tags/v2.5.0 #> 27 refs/tags/v3.0.0 #> 28 refs/tags/v3.0.1 #> 29 refs/tags/v3.1.0 #> hash #> 1 928ff3e6a52a08bbabadc57027c43de13b0d7601 #> 2 736e5824c082e94fc1acc68fb604fa66b19d1826 #> 3 75f3f185c116ff69f3abd56bf89fa9032a9eb965 #> 4 722cd638ebe4529db20442962cd2d7dc56c694d7 #> 5 b6ebff6771ff9ee8e5b19f8b6c20e142182ab866 #> 6 ee931427a9ee51bdfd837bd03c22d2d60ad81946 #> 7 28d4efb9b8875e933d682285b65ab05c61f6aef2 #> 8 8ddc6e68b970f14d45af6109108b17352dc8a4e7 #> 9 bfaabf3658c229d406591b4436991e37720476cf #> 10 0d4089fc2f6cf8c7364f02698cf257363e877660 #> 11 be878b57b6f9978953916b0a1d7272f104e27309 #> 12 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[9] \"deepen-relative\" \"no-progress\" #> [11] \"include-tag\" \"multi_ack_detailed\" #> [13] \"allow-tip-sha1-in-want\" \"allow-reachable-sha1-in-want\" #> [15] \"no-done\" \"symref=HEAD:refs/heads/gh-pages\" #> [17] \"object-format=sha1\" \"agent=git/2.32.0\" git_list_refs(\"https://git.savannah.nongnu.org/git/administration/savane.git\") #> $refs #> ref hash #> 1 HEAD bdfce5e39c3ebb36b748925dfc8a0cde483fda6a #> 2 refs/heads/i18n e5f2c309b038789a82ab5a54d723a3564f1bde58 #> 3 refs/heads/master bdfce5e39c3ebb36b748925dfc8a0cde483fda6a #> 4 refs/tags/release-3.10 e1db1a011effeb7d16a5af9c15b91d8998579ad7 #> 5 refs/tags/release-3.10^{} d16b7e7e849d5d63794b1c48847e8a57250ce2bd #> 6 refs/tags/release-3.11 7d5723e022a7144c077501ecff5ac23984effe8d #> 7 refs/tags/release-3.11^{} af29b8a99fe4b4e7deefb6bcbf9a6d98f43228bf #> #> $caps #> [1] \"multi_ack\" \"thin-pack\" #> [3] \"side-band\" \"side-band-64k\" #> [5] \"ofs-delta\" \"shallow\" #> [7] \"deepen-since\" \"deepen-not\" #> [9] \"deepen-relative\" \"no-progress\" #> [11] \"include-tag\" \"multi_ack_detailed\" #> [13] \"no-done\" \"symref=HEAD:refs/heads/master\" #> [15] \"agent=git/2.17.1\""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/install_package_plan.html","id":null,"dir":"Reference","previous_headings":"","what":"Perform a package installation plan — install_package_plan","title":"Perform a package installation plan — install_package_plan","text":"See 'Installation plans' details format.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/install_package_plan.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Perform a package installation plan — install_package_plan","text":"","code":"install_package_plan( plan, lib = .libPaths()[[1]], num_workers = 1, cache = NULL )"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/install_package_plan.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Perform a package installation plan — install_package_plan","text":"plan Package plan object, data frame, see 'Installation plans' format. lib Library directory install . num_workers Number worker processes use. cache Package cache use, NULL.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/install_package_plan.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Perform a package installation plan — install_package_plan","text":"Information installation process.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/install_plans.html","id":null,"dir":"Reference","previous_headings":"","what":"Installation plans — install_plans","title":"Installation plans — install_plans","text":"installation plan contains data needed install set package files. usually created installation proposal solving dependencies downloading package files.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/install_plans.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Installation plans — install_plans","text":"also possible create installation plan different way. installation plan object must data frame, least following columns: package: name package. type: type package reference. binary: Whether package binary package. file: Full path package file directory. dependencies: list column lists names dependent packages package. needscompilation: Whether package needs compilation. FALSE binary packages. installation plans created via pkg_installation_proposal, plan contains columns pkg_download_result objects, additional ones: library: library package supposed installed . direct: whether package directly requested installed dependency. vignettes: whether vignettes need (re)built. packaged: whether R CMD build already called package.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/install_plans.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Installation plans — install_plans","text":"","code":"if (FALSE) { pdi <- new_pkg_installation_proposal( \"pak\", config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$download() pdi$get_install_plan() }"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/is_valid_package_name.html","id":null,"dir":"Reference","previous_headings":"","what":"Check whether a package name is valid — is_valid_package_name","title":"Check whether a package name is valid — is_valid_package_name","text":"Check whether package name valid","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/is_valid_package_name.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check whether a package name is valid — is_valid_package_name","text":"","code":"is_valid_package_name(nm)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/is_valid_package_name.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check whether a package name is valid — is_valid_package_name","text":"nm Potential package name, string length 1.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/is_valid_package_name.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check whether a package name is valid — is_valid_package_name","text":"Logical flag. FALSE, reason attribute contains character string, explanation package name invalid. See examples .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/is_valid_package_name.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check whether a package name is valid — is_valid_package_name","text":"","code":"is_valid_package_name(\"pak\") #> [1] TRUE is_valid_package_name(\"pkg\") #> [1] FALSE #> attr(,\"reason\") #> [1] \"Package name forbidden by CRAN.\" is_valid_package_name(\"pak\\u00e1ge\") #> [1] FALSE #> attr(,\"reason\") #> [1] \"It can only contain ASCII characters.\" is_valid_package_name(\"good-package\") #> [1] FALSE #> attr(,\"reason\") #> [1] \"It can only contain letters, numbers and dot.\" is_valid_package_name(\"x\") #> [1] FALSE #> attr(,\"reason\") #> [1] \"It must have at least two characters.\" is_valid_package_name(\"1stpackage\") #> [1] FALSE #> attr(,\"reason\") #> [1] \"It must start with a letter.\" is_valid_package_name(\"dots.\") #> [1] FALSE #> attr(,\"reason\") #> [1] \"It must not end with a dot.\""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/lib_status.html","id":null,"dir":"Reference","previous_headings":"","what":"Status of packages in a library — lib_status","title":"Status of packages in a library — lib_status","text":"Query data packages package library.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/lib_status.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Status of packages in a library — lib_status","text":"","code":"lib_status(library = .libPaths()[1], packages = NULL)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/lib_status.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Status of packages in a library — lib_status","text":"library Path library. packages NULL, packages shown.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/lib_status.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Status of packages in a library — lib_status","text":"Data frame contains data packages installed library. always columns: biocviews: corresponding field DESCRIPTION, must present Bioconductor packages, packages typically . built: Built field DESCRIPTION. depends, suggests, Imports, linkingto, enhances: corresponding fields DESCRIPTION files. deps: list data frames, dependencies package. columns: ref, type (dependency type lowercase), package (dependent package, R), op version, last two version requirement. op can >=, >, == <=, although first one common practice. library: path package library containing package. license: DESCRIPTION. md5sum: DESCTIPTION, typically NA, except Windows. needscompilation: DESCRIPTION, column logical. package: package name. platform: Built field DESCRIPTION, current platform missing DESCRIPTION. priority: DESCRIPTION, usually base, recommended, missing. ref: corresponding installed::* package reference. repository: DESCRIPTION. packages CRAN repository CRAN, repositories, e.g. R-universe adds repository URL . repotype: cran, bioc missing. rversion: Built field. field, current R version. sysreqs: SystemRequirements field DESCRIPTION. title: package title. type: always installed. version: package version (string). columns unchanged DESCRIPTION, pkgdepends also adds couple.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/lib_status.html","id":"notes-","dir":"Reference","previous_headings":"","what":"Notes:","title":"Status of packages in a library — lib_status","text":"addition, also remote* config/needs/* entries DESCRIPTION files. (Case insensitive.) columns type character, except needscompilation, logical deps, list columns. entry missing package, set NA. Note column names lowercase, even corresponding entries DESCRIPTION. order columns deterministic, assume order. Additional columns might present, internal pkgdepends used user code.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/parse_pkg_refs.html","id":null,"dir":"Reference","previous_headings":"","what":"Parse package location references — parse_pkg_refs","title":"Parse package location references — parse_pkg_refs","text":"See pkg_refs supported package references.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/parse_pkg_refs.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Parse package location references — parse_pkg_refs","text":"","code":"parse_pkg_refs(refs, remote_types = NULL, ...) parse_pkg_ref(ref, remote_types = NULL, ...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/parse_pkg_refs.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Parse package location references — parse_pkg_refs","text":"refs Character vector references. remote_types Custom remote types can added , advanced use, experimental currently. ... Additional arguments passed individual parser functions. ref package reference, like refs, length one vector, convenience.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/parse_pkg_refs.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Parse package location references — parse_pkg_refs","text":"parse_pkg_refs() returns list parsed references. parse_pkg_ref() returns one parsed reference. parsed reference list, least elements: ref: original reference string. type: reference type. package: package name. typically contains additional data, specific various reference types. See pkg_refs details. parsed reference always class remote_ref_ remote_ref.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_config.html","id":null,"dir":"Reference","previous_headings":"","what":"pkgdepends configuration — pkg_config","title":"pkgdepends configuration — pkg_config","text":"Configuration entries several pkgdepends classes.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_config.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"pkgdepends configuration — pkg_config","text":"","code":"current_config()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_config.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"pkgdepends configuration — pkg_config","text":"pkgdepends configuration set several source. , order preference: Function arguments, e.g. config argument new_pkg_installation_proposal(). Global options, set via options(). name global option pkg. prefix plus name pkgdepends configuration entry. E.g. pkg.platforms. Environment variables. name environment variable PKG_ prefix, plus name pkgdepends configuration entry, uppercase. E.g. PKG_PLATFORMS. Default values. classes use entries. E.g. pkg_download_proposal concerned package libraries, 'll ignore library configuration entry. Call current_config() print current configuration.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_config.html","id":"configuration-entries","dir":"Reference","previous_headings":"","what":"Configuration entries","title":"pkgdepends configuration — pkg_config","text":"build_vignettes: Whether build vignettes package trees. used package obtained package tree, source (binary) package archive. default vignettes built case. set TRUE, need make sure vignette builder packages available, installed default currently. cache_dir: Directory download packages . Defaults temporary directory within R session temporary directory, see base::tempdir(). cran_mirror: CRAN mirror use. Defaults repos option (see base::options()), set https://cran.rstudio.com. dependencies: Dependencies consider download install. Defaults hard dependencies, see pkg_dep_types_hard(). following values supported PKG_DEPENDENCIES environment variable: \"TRUE\", \"FALSE\", \"NA\", semicolon separated list dependency types. See as_pkg_dependencies() details. git_submodules: Whether update submodules git repositories. affects git:: gitlab:: package sources . R package subdirectory submodules within directory updated. submodule appears .Rbuildignore, skipped. include_linkingto: Whether always include LinkingTo dependencies solution installation, even needed packages installed binaries. sometimes useful, see e.g. https://github.com/r-lib/pak/issues/485 example use case. library: Package library install packages . also used already installed packages considering dependencies dependency lookup package installation. Defaults first path .libPaths(). metadata_cache_dir: Location metadata replica pkgcache::cranlike_metadata_cache. Defaults temporary directory within R session temporary directory, see base::tempdir(). metadata_update_after: time interval difftime object. pkgdepends update metadata cache older . default one day. PKG_METADATA_UPDATE_AFTER environment variable may set seconds (s suffix), minutes (m suffix), hours (h suffix), days (d suffix). E.g: 1d means one day. package_cache_dir: Package cache location pkgcache::package_cache. default pkgcache default. platforms: Character vector platforms download install packages . See default_platforms() possible platform names. Defaults platform current R session, plus \"source\". r_versions: Character vector, R versions download install packages . defaults current R version. sysreqs: Whether automatically look install system requirements. TRUE, r pak_or_pkgdepends() try install required system packages. FALSE, system requirements still printed (including OS packages supported platforms), installed. default TRUE supported platforms, current user root user password-less sudo configured current user. sysreqs_db_update: Whether try update system requirements database GitHub. update fails, cached build-database used. Defaults TRUE. sysreqs_db_update_timeout: Timeout system requirements database update. Defaults five seconds. sysreqs_dry_run: TRUE, pkgdepends prints system commands install system requirements, execute . sysreqs_platform: platform use system requirements lookup. Linux, system requirements currently supported, must string containing distribution name release, separated dash. E.g.: \"ubuntu-22.04\", \"rhel-9\". sysreqs_rspm_repo_id: Posit Package Manager (formerly RStudio Package Manager) repository id use CRAN system requirements lookup. Defaults RSPM_REPO_ID environment variable, set. set, defaults 1. sysreqs_rspm_url: Root URL Posit Package Manager (formerly RStudio Package Manager) system requirements lookup. default RSPM_ROOT environment variable used, set. set, defaults https://packagemanager.posit.co. sysreqs_sudo: Whether use sudo install system requirements, Unix. default TRUE Linux effective user id current process root user. sysreqs_update: Whether try update system packages already installed. defaults TRUE CI systems: CI environment variable set true. sysreqs_verbose: Whether echo output system requirements installation. Defaults TRUE CI environment variable set. use_bioconductor: Whether automatically use Bioconductor repositories. Defaults TRUE. windows_archs: Character scalar specifying architectures download/install Windows. possible values : \"prefer-x64\": Generally prefer x64 binaries. current R session x64, download/install x64 packages. (packages might still multi-architecture binaries!) current R session i386, download/install packages architectures. might mean compiling packages source binary packages x64 , like CRAN Windows binaries R 4.2.x currently. \"prefer-x64\" default R 4.2.0 later. \"\": Always download/install packages i386 x64 architectures. might need compilation source available binaries x64 , like CRAN Windows binaries R 4.2.x currently. \"\" default R 4.2.0 earlier.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_dep_types.html","id":null,"dir":"Reference","previous_headings":"","what":"Possible package dependency types — pkg_dep_types_hard","title":"Possible package dependency types — pkg_dep_types_hard","text":"Hard dependencies needed package load, soft dependencies optional.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_dep_types.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Possible package dependency types — pkg_dep_types_hard","text":"","code":"pkg_dep_types_hard() pkg_dep_types_soft() pkg_dep_types()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_dep_types.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Possible package dependency types — pkg_dep_types_hard","text":"string vector dependency types, capitalized.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":null,"dir":"Reference","previous_headings":"","what":"R6 class for package dependency lookup — new_pkg_deps","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Look dependencies R packages various sources.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"new_pkg_deps(refs, ...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package dependency lookup — new_pkg_deps","text":"refs Package names references. See 'Package references' syntax. ... Additional arguments, passed pkg_deps$new().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"R6 class for package dependency lookup — new_pkg_deps","text":"new_pkg_deps() returns new pkg_deps object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"R6 class for package dependency lookup — new_pkg_deps","text":"new_pkg_deps() creates new object pkg_deps class. advantage new_pkg_deps() compared using pkg_deps constructor directly avoids making pkgdepends build time dependency. usual steps query package dependencies : Create pkg_deps object new_pkg_deps(). Resolve possible dependencies pkg_deps$resolve(). Solve dependencies, obtain subset possible dependencies can installed together, pkg_deps$solve(). Call pkg_deps$get_solution() list result dependency solver.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"public-methods","dir":"Reference","previous_headings":"","what":"Public methods","title":"R6 class for package dependency lookup — new_pkg_deps","text":"pkg_deps$new() pkg_deps$get_refs() pkg_deps$get_config() pkg_deps$resolve() pkg_deps$async_resolve() pkg_deps$get_resolution() pkg_deps$get_solve_policy() pkg_deps$set_solve_policy() pkg_deps$solve() pkg_deps$get_solution() pkg_deps$stop_for_solution_error() pkg_deps$draw() pkg_deps$format() pkg_deps$print() pkg_deps$clone()","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-new-","dir":"Reference","previous_headings":"","what":"Method new()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Create new pkg_deps object. Consider using new_pkg_deps() instead calling constructor directly. returned object can used look (recursive) dependencies R packages various sources. perform actual lookup, need call resolve() method.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$new( refs, config = list(), policy = c(\"lazy\", \"upgrade\"), remote_types = NULL )"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"arguments-1","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package dependency lookup — new_pkg_deps","text":"refs Package names references. See 'Package references' syntax. config Configuration options, named list. See 'Configuration'. policy Solution policy. See 'dependency solver'. remote_types Custom remote ref types, advanced use, experimental currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"new pkg_deps object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-get-refs-","dir":"Reference","previous_headings":"","what":"Method get_refs()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"package refs used create pkg_deps object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-1","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$get_refs()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-1","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"character vector package refs used create pkg_deps object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-get-config-","dir":"Reference","previous_headings":"","what":"Method get_config()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Configuration options pkg_deps object. See 'Configuration' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-2","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$get_config()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-2","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"See 'Configuration' configuration entries.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-resolve-","dir":"Reference","previous_headings":"","what":"Method resolve()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Resolve dependencies specified package references. usually means downloading metadata CRAN Bioconductor, unless already cached, also GitHub GitHub refs included, either directly indirectly. See 'Dependency resolution' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-3","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-3","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"pkg_deps object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-async-resolve-","dir":"Reference","previous_headings":"","what":"Method async_resolve()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"resolve(), asynchronous. method advanced use.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-4","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$async_resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-4","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"deferred value.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-get-resolution-","dir":"Reference","previous_headings":"","what":"Method get_resolution()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Query result dependency resolution. method can called resolve() completed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-5","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$get_resolution()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-5","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"pkg_resolution_result object, also data frame. See 'Dependency resolution' columns.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-get-solve-policy-","dir":"Reference","previous_headings":"","what":"Method get_solve_policy()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Returns current policy dependency solver. See 'dependency solver' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-6","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$get_solve_policy()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-6","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"character vector length one.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-set-solve-policy-","dir":"Reference","previous_headings":"","what":"Method set_solve_policy()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Set current policy dependency solver. object already contains solution new policy different old policy, solution deleted. See 'dependency solver' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-7","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$set_solve_policy(policy = c(\"lazy\", \"upgrade\"))"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"arguments-2","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package dependency lookup — new_pkg_deps","text":"policy Policy set.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-solve-","dir":"Reference","previous_headings":"","what":"Method solve()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Solve package dependencies. resolved dependencies, works set packages, can installed together create functional installation. set includes directly specified packages, required (suggested, depending configuration) packages well. includes every package . See 'dependency solver' details. solve() calls resolve() automatically, called yet.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-8","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$solve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-7","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"pkg_deps object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-get-solution-","dir":"Reference","previous_headings":"","what":"Method get_solution()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Returns solution package dependencies.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-9","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$get_solution()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-8","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"pkg_solution_result object, list. See pkg_solution_result details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-stop-for-solution-error-","dir":"Reference","previous_headings":"","what":"Method stop_for_solution_error()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Error dependency solver failed find consistent set packages can installed together.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-10","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$stop_for_solution_error()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-draw-","dir":"Reference","previous_headings":"","what":"Method draw()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Draw tree package dependencies. returns tree object, see cli::tree(). Printing object prints dependency tree screen.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-11","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$draw()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-9","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"tree object cli package, see cli::tree().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-format-","dir":"Reference","previous_headings":"","what":"Method format()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Format pkg_deps object, typically printing.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-12","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$format(...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"arguments-3","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package dependency lookup — new_pkg_deps","text":"... used currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-10","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"character vector, element line printout.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-print-","dir":"Reference","previous_headings":"","what":"Method print()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Prints pkg_deps object screen. printout includes: package refs. Whether object resolved dependencies. Whether resolution errors. Whether object solved dependencies. Whether solution errors. Advice methods call next. See example .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-13","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$print(...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"arguments-4","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package dependency lookup — new_pkg_deps","text":"... used currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-11","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"pkg_deps object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-clone-","dir":"Reference","previous_headings":"","what":"Method clone()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"objects class cloneable method.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-14","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$clone(deep = FALSE)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"arguments-5","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package dependency lookup — new_pkg_deps","text":"deep Whether make deep clone.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"# Method initialize() pd <- pkg_deps$new(\"r-lib/pkgdepends\") pd #> #> + refs: #> - r-lib/pkgdepends #> (use `$resolve()` to resolve dependencies) #> (use `$solve()` to solve dependencies) # Method get_refs() pd <- new_pkg_deps(c(\"pak\", \"jsonlite\")) pd$get_refs() #> [1] \"pak\" \"jsonlite\" # Method get_config() pd <- new_pkg_deps(\"pak\") pd$get_config() #> # pkg config #> ## build_vignettes #> #> [1] FALSE #> #> ## sysreqs_verbose #> #> [1] TRUE #> #> ## sysreqs_db_update #> #> [1] TRUE #> #> ## metadata_cache_dir #> #> [1] \"/tmp/RtmpoTKrbB/file1ba832d02357\" #> #> ## platforms #> #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" \"source\" #> #> ## goal #> #> [1] \"unknown\" #> #> ## r_versions #> #> [1] \"4.4.0\" #> #> ## cache_dir #> #> [1] \"/tmp/RtmpoTKrbB/file1ba86434d345\" #> #> ## library #> #> [1] \"/tmp/RtmpoTKrbB/file1ba83afc15c8\" #> #> ## metadata_update_after #> #> Time difference of 24 hours #> #> ## include_linkingto #> #> [1] FALSE #> #> ## sysreqs_rspm_repo_id #> #> [1] \"1\" #> #> ## sysreqs_update #> #> [1] TRUE #> #> ## package_cache_dir #> #> NULL #> #> ## sysreqs_rspm_url #> #> [1] \"https://packagemanager.posit.co\" #> #> ## sysreqs_sudo #> #> [1] TRUE #> #> ## sysreqs_db_update_timeout #> #> Time difference of 5 secs #> #> ## sysreqs_lookup_system #> #> [1] FALSE #> #> ## git_submodules #> #> [1] FALSE #> #> ## sysreqs_platform #> #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" #> #> ## dependencies #> #> [1] \"Depends\" \"Imports\" \"LinkingTo\" #> #> ## sysreqs #> #> [1] TRUE #> #> ## sysreqs_dry_run #> #> [1] FALSE #> #> ## windows_archs #> #> [1] \"prefer-x64\" #> #> ## use_bioconductor #> #> [1] TRUE #> #> ## cran_mirror #> #> CRAN #> \"https://cran.rstudio.com\" #> # Method resolve() pd <- new_pkg_deps(\"pak\") pd$resolve() #> #> ✔ Updated metadata database: 3.43 MB in 3 files. #> #> ℹ Updating metadata database #> ✔ Updating metadata database ... done #> pd$get_resolution() #> # A data frame: 2 × 35 #> ref type direct directpkg status package version license #> #> 1 pak standard TRUE TRUE OK pak 0.7.2 GPL-3 #> 2 pak standard TRUE TRUE OK pak 0.7.2 GPL-3 #> # ℹ 27 more variables: needscompilation , priority , #> # md5sum , sha256 , filesize , built , #> # platform , rversion , repotype , repodir , #> # target , deps , mirror , sources , #> # remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , #> # cache_status , sysreqs_packages , … # Method get_resolution() pd <- new_pkg_deps(\"r-lib/pkgdepends\") pd$resolve() pd$get_resolution() #> # A data frame: 27 × 35 #> ref type direct directpkg status package version license #> #> 1 r-lib/pkgdepends github TRUE TRUE OK pkgdep… 0.7.2.… MIT + … #> 2 callr stand… FALSE FALSE OK callr 3.7.6 MIT + … #> 3 cli stand… FALSE FALSE OK cli 3.6.2 MIT + … #> 4 curl stand… FALSE FALSE OK curl 5.2.1 MIT + … #> 5 desc stand… FALSE FALSE OK desc 1.4.3 MIT + … #> 6 filelock stand… FALSE FALSE OK filelo… 1.0.3 MIT + … #> 7 jsonlite stand… FALSE FALSE OK jsonli… 1.8.8 MIT + … #> 8 lpSolve stand… FALSE FALSE OK lpSolve 5.6.20 LGPL-2 #> 9 pkgbuild stand… FALSE FALSE OK pkgbui… 1.4.4 MIT + … #> 10 pkgcache stand… FALSE FALSE OK pkgcac… 2.2.2 MIT + … #> # ℹ 17 more rows #> # ℹ 27 more variables: needscompilation , priority , #> # md5sum , sha256 , filesize , built , #> # platform , rversion , repotype , repodir , #> # target , deps , mirror , sources , #> # remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , … # Method get_solve_policy() pdi <- new_pkg_deps(\"r-lib/pkgdepends\") pdi$get_solve_policy() #> [1] \"lazy\" pdi$set_solve_policy(\"upgrade\") pdi$get_solve_policy() #> [1] \"upgrade\" # Method set_solve_policy() pdi <- new_pkg_deps(\"r-lib/pkgdepends\") pdi$get_solve_policy() #> [1] \"lazy\" pdi$set_solve_policy(\"upgrade\") pdi$get_solve_policy() #> [1] \"upgrade\" # Method solve() pd <- new_pkg_deps(\"r-lib/pkgdepends\") pd$resolve() pd$solve() pd$get_solution() #> #> + result: OK #> + refs: #> - r-lib/pkgdepends #> + constraints (58): #> - select pkgdepends exactly once #> - select callr at most once #> - select cli at most once #> - select curl at most once #> - select desc at most once #> - select filelock at most once #> - select jsonlite at most once #> - select lpSolve at most once #> - select pkgbuild at most once #> - select pkgcache at most once #> ... #> + solution: #> - R6 #> - callr #> - cli #> - curl #> - desc #> - filelock #> - jsonlite #> - lpSolve #> - pkgbuild #> - pkgcache #> - processx #> - ps #> - r-lib/pkgdepends #> - zip # Method get_solution() pd <- new_pkg_deps(\"pkgload\") pd$resolve() pd$solve() pd$get_solution() #> #> + result: OK #> + refs: #> - pkgload #> + constraints (48): #> - select pkgload exactly once #> - select callr at most once #> - select cli at most once #> - select crayon at most once #> - select desc at most once #> - select fs at most once #> - select glue at most once #> - select pkgbuild at most once #> - select processx at most once #> - select ps at most once #> ... #> + solution: #> - R6 #> - callr #> - cli #> - crayon #> - desc #> - fs #> - glue #> - pkgbuild #> - pkgload #> - processx #> - ps #> - rlang #> - rprojroot #> - withr # Method stop_for_solution_error() # This is an error, because the packages conflict: pd <- new_pkg_deps( c(\"r-lib/pak\", \"cran::pak\"), config = list(library = tempfile()) ) pd$resolve() pd$solve() pd #> #> + refs: #> - r-lib/pak #> - cran::pak #> + has resolution (+0 dependencies) #> + has solution #> x has solution errors #> (use `$get_resolution()` to see resolution results) #> (use `$show_solution()` to see the dependencies #> (use `$get_solution()` to see the full solution results) # This fails: # pd$stop_for_solution_error() # Method draw() pd <- new_pkg_deps(\"pkgload\") pd$solve() pd$draw() #> pkgload 1.3.4 [new][dl] (unknown size) #> ├─cli 3.6.2 [new][dl] (unknown size) #> ├─crayon 1.5.2 [new][dl] (unknown size) #> ├─desc 1.4.3 [new][dl] (unknown size) #> │ ├─cli #> │ └─R6 2.5.1 [new][dl] (unknown size) #> ├─fs 1.6.4 [new][dl] (unknown size) #> ├─glue 1.7.0 [new][dl] (unknown size) #> ├─pkgbuild 1.4.4 [new][dl] (unknown size) #> │ ├─callr 3.7.6 [new][dl] (unknown size) #> │ │ ├─processx 3.8.4 [new][dl] (unknown size) #> │ │ │ ├─ps 1.7.6 [new][dl] (unknown size) #> │ │ │ └─R6 #> │ │ └─R6 #> │ ├─cli #> │ ├─desc #> │ ├─processx #> │ └─R6 #> ├─rlang 1.1.3 [new][dl] (unknown size) #> ├─rprojroot 2.0.4 [new][dl] (unknown size) #> └─withr 3.0.0 [new][dl] (unknown size) #> #> Key: [new] new | [dl] download # Method print() pd <- new_pkg_deps(\"r-lib/pkgdepends\") pd #> #> + refs: #> - r-lib/pkgdepends #> (use `$resolve()` to resolve dependencies) #> (use `$solve()` to solve dependencies) pd$resolve() pd #> #> + refs: #> - r-lib/pkgdepends #> + has resolution (+13 dependencies) #> (use `$get_resolution()` to see resolution results) #> (use `$solve()` to solve dependencies) pd$solve() pd #> #> + refs: #> - r-lib/pkgdepends #> + has resolution (+13 dependencies) #> + has solution #> (use `$get_resolution()` to see resolution results) #> (use `$show_solution()` to see the dependencies #> (use `$get_solution()` to see the full solution results) #> (use `$draw()` to draw the dependency tree)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":null,"dir":"Reference","previous_headings":"","what":"R6 class for package downloads — new_pkg_download_proposal","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Download packages dependencies, various sources.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"new_pkg_download_proposal(refs, ...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package downloads — new_pkg_download_proposal","text":"refs Package names references. See 'Package references' syntax. ... Additional arguments, passed pkg_download_proposal$new().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"R6 class for package downloads — new_pkg_download_proposal","text":"new_pkg_download_proposal() returns new pkg_download_proposal object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"R6 class for package downloads — new_pkg_download_proposal","text":"new_pkg_download_proposal() creates new object pkg_download_proposal class, can used look download R packages dependencies. advantage new_pkg_download_proposal() compared using pkg_download_proposal constructor directly avoids making pkgdepends build time dependency. Typical workflow download set packages: Create pkg_download_proposal object new_pkg_download_proposal(). Resolve possible dependencies pkg_download_proposal$resolve(). Download files pkg_download_proposal$download(). Get data packages downloads pkg_download_proposal$get_downloads().","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"public-methods","dir":"Reference","previous_headings":"","what":"Public methods","title":"R6 class for package downloads — new_pkg_download_proposal","text":"pkg_download_proposal$new() pkg_download_proposal$get_refs() pkg_download_proposal$get_config() pkg_download_proposal$resolve() pkg_download_proposal$async_resolve() pkg_download_proposal$get_resolution() pkg_download_proposal$download() pkg_download_proposal$async_download() pkg_download_proposal$get_downloads() pkg_download_proposal$stop_for_download_error() pkg_download_proposal$format() pkg_download_proposal$print() pkg_download_proposal$clone()","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-new-","dir":"Reference","previous_headings":"","what":"Method new()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Create new pkg_download_proposal object. Consider using new_pkg_download_proposal() instead calling constructor directly. returned object can used look (recursive) dependencies R packages various sources, download package files.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$new(refs, config = list(), remote_types = NULL)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"arguments-1","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package downloads — new_pkg_download_proposal","text":"refs Package names references. See 'Package references' syntax. config Configuration options, named list. See 'Configuration'. remote_types Custom remote ref types, advanced use, experimental currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"examples","dir":"Reference","previous_headings":"","what":"Examples","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pdl <- pkg_download_proposal$new(\"r-lib/pkgdepends\") pdl"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-get-refs-","dir":"Reference","previous_headings":"","what":"Method get_refs()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"package refs used create pkg_download_proposal object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-1","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$get_refs()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"character vector package refs used create pkg_download_proposal object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-get-config-","dir":"Reference","previous_headings":"","what":"Method get_config()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Configuration options pkg_download_proposal object. See 'Configuration' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-2","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$get_config()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-1","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Named list. See 'Configuration' configuration options.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-resolve-","dir":"Reference","previous_headings":"","what":"Method resolve()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Resolve dependencies specified package references. usually means downloading metadata CRAN Bioconductor, unless already cached, also GitHub GitHub refs included, either directly indirectly. See 'Dependency resolution' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-3","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-2","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"pkg_download_proposal object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-async-resolve-","dir":"Reference","previous_headings":"","what":"Method async_resolve()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"resolve(), asynchronous. method advanced use.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-4","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$async_resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-3","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"deferred value.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-get-resolution-","dir":"Reference","previous_headings":"","what":"Method get_resolution()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Query result dependency resolution. method can called resolve() completed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-5","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$get_resolution()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-4","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"pkg_resolution_result object, also data frame. See 'Dependency resolution' columns.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-download-","dir":"Reference","previous_headings":"","what":"Method download()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Download resolved packages. uses package cache pkgcache package default, avoid downloads possible.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-6","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$download()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-5","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"pkg_download_proposal object, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-async-download-","dir":"Reference","previous_headings":"","what":"Method async_download()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"download(), asynchronous. method advanced use.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-7","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$async_download()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-6","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"deferred value.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-get-downloads-","dir":"Reference","previous_headings":"","what":"Method get_downloads()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Returns summary package downloads.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-8","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$get_downloads()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-7","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"pkg_download_result object, list. See pkg_download_result details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-stop-for-download-error-","dir":"Reference","previous_headings":"","what":"Method stop_for_download_error()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Throw error downloads failed recent pkg_download_proposal$download() call.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-9","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$stop_for_download_error()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-format-","dir":"Reference","previous_headings":"","what":"Method format()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Format pkg_download_proposal object, typically printing.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-10","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$format(...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"arguments-2","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package downloads — new_pkg_download_proposal","text":"... used currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-8","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Nothing. character vector, element line printout.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-print-","dir":"Reference","previous_headings":"","what":"Method print()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Prints pkg_download_proposal object screen. printout includes: package refs. Whether object resolved dependencies. Whether resolution errors. Whether downloads completed. Whether downloads errors. Advice methods call next. See example .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-11","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$print(...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"arguments-3","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package downloads — new_pkg_download_proposal","text":"... used currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-9","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"pkg_download_proposal object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-clone-","dir":"Reference","previous_headings":"","what":"Method clone()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"objects class cloneable method.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-12","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$clone(deep = FALSE)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"arguments-4","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package downloads — new_pkg_download_proposal","text":"deep Whether make deep clone.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"# Method get_refs() pdl <- new_pkg_download_proposal(c(\"pak\", \"jsonlite\")) pdl$get_refs() #> [1] \"pak\" \"jsonlite\" # Method get_config() pdl <- new_pkg_download_proposal(\"pak\") pdl$get_config() #> # pkg config #> ## build_vignettes #> #> [1] FALSE #> #> ## sysreqs_verbose #> #> [1] TRUE #> #> ## sysreqs_db_update #> #> [1] TRUE #> #> ## metadata_cache_dir #> #> [1] \"/tmp/RtmpoTKrbB/file1ba83f12b5b8\" #> #> ## platforms #> #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" \"source\" #> #> ## goal #> #> [1] \"unknown\" #> #> ## r_versions #> #> [1] \"4.4.0\" #> #> ## cache_dir #> #> [1] \"/tmp/RtmpoTKrbB/file1ba86434d345\" #> #> ## library #> #> NULL #> #> ## metadata_update_after #> #> Time difference of 24 hours #> #> ## include_linkingto #> #> [1] FALSE #> #> ## sysreqs_rspm_repo_id #> #> [1] \"1\" #> #> ## sysreqs_update #> #> [1] TRUE #> #> ## package_cache_dir #> #> NULL #> #> ## sysreqs_rspm_url #> #> [1] \"https://packagemanager.posit.co\" #> #> ## sysreqs_sudo #> #> [1] TRUE #> #> ## sysreqs_db_update_timeout #> #> Time difference of 5 secs #> #> ## sysreqs_lookup_system #> #> [1] TRUE #> #> ## git_submodules #> #> [1] FALSE #> #> ## sysreqs_platform #> #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" #> #> ## dependencies #> #> [1] \"Depends\" \"Imports\" \"LinkingTo\" #> #> ## sysreqs #> #> [1] TRUE #> #> ## sysreqs_dry_run #> #> [1] FALSE #> #> ## windows_archs #> #> [1] \"prefer-x64\" #> #> ## use_bioconductor #> #> [1] TRUE #> #> ## cran_mirror #> #> CRAN #> \"https://cran.rstudio.com\" #> # Method resolve() pdl <- new_pkg_download_proposal(\"pak\") pdl$resolve() pdl$get_resolution() #> # A data frame: 2 × 35 #> ref type direct directpkg status package version license #> #> 1 pak standard TRUE TRUE OK pak 0.7.2 GPL-3 #> 2 pak standard TRUE TRUE OK pak 0.7.2 GPL-3 #> # ℹ 27 more variables: needscompilation , priority , #> # md5sum , sha256 , filesize , built , #> # platform , rversion , repotype , repodir , #> # target , deps , mirror , sources , #> # remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , #> # cache_status , sysreqs_packages , … # Method get_resolution() pdl <- new_pkg_download_proposal(\"r-lib/pkgdepends\") pdl$resolve() pdl$get_resolution() #> # A data frame: 27 × 35 #> ref type direct directpkg status package version license #> #> 1 r-lib/pkgdepends github TRUE TRUE OK pkgdep… 0.7.2.… MIT + … #> 2 callr stand… FALSE FALSE OK callr 3.7.6 MIT + … #> 3 cli stand… FALSE FALSE OK cli 3.6.2 MIT + … #> 4 curl stand… FALSE FALSE OK curl 5.2.1 MIT + … #> 5 desc stand… FALSE FALSE OK desc 1.4.3 MIT + … #> 6 filelock stand… FALSE FALSE OK filelo… 1.0.3 MIT + … #> 7 jsonlite stand… FALSE FALSE OK jsonli… 1.8.8 MIT + … #> 8 lpSolve stand… FALSE FALSE OK lpSolve 5.6.20 LGPL-2 #> 9 pkgbuild stand… FALSE FALSE OK pkgbui… 1.4.4 MIT + … #> 10 pkgcache stand… FALSE FALSE OK pkgcac… 2.2.2 MIT + … #> # ℹ 17 more rows #> # ℹ 27 more variables: needscompilation , priority , #> # md5sum , sha256 , filesize , built , #> # platform , rversion , repotype , repodir , #> # target , deps , mirror , sources , #> # remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , … # Method download() pdl <- new_pkg_download_proposal(\"r-lib/pkgdepends\") pdl$resolve() pdl$download() #> ℹ Getting 13 pkgs (3.80 MB) and 14 pkgs with unknown sizes #> ✔ Got callr 3.7.6 (source) (104.36 kB) #> ✔ Got filelock 1.0.3 (x86_64-pc-linux-gnu-ubuntu-22.04) (24.75 kB) #> ✔ Got desc 1.4.3 (source) (80.07 kB) #> ✔ Got ps 1.7.6 (source) (129.49 kB) #> ✔ Got filelock 1.0.3 (source) (15.44 kB) #> ✔ Got pkgbuild 1.4.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (202.26 kB) #> ✔ Got curl 5.2.1 (source) (716.70 kB) #> ✔ Got lpSolve 5.6.20 (x86_64-pc-linux-gnu-ubuntu-22.04) (373.78 kB) #> ✔ Got zip 2.3.1 (source) (111.28 kB) #> ✔ Got cli 3.6.2 (source) (569.77 kB) #> ✔ Got callr 3.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) (445.43 kB) #> ✔ Got pkgbuild 1.4.4 (source) (48.79 kB) #> ✔ Got processx 3.8.4 (source) (163.98 kB) #> ✔ Got lpSolve 5.6.20 (source) (468.22 kB) #> ✔ Got R6 2.5.1 (source) (63.42 kB) #> ✔ Got curl 5.2.1 (x86_64-pc-linux-gnu-ubuntu-22.04) (768.44 kB) #> ✔ Got processx 3.8.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (444.53 kB) #> ✔ Got desc 1.4.3 (x86_64-pc-linux-gnu-ubuntu-22.04) (334.41 kB) #> ✔ Got R6 2.5.1 (x86_64-pc-linux-gnu-ubuntu-22.04) (83.26 kB) #> ✔ Got pkgcache 2.2.2 (source) (271.72 kB) #> ✔ Got jsonlite 1.8.8 (x86_64-pc-linux-gnu-ubuntu-22.04) (1.09 MB) #> ✔ Got cli 3.6.2 (x86_64-pc-linux-gnu-ubuntu-22.04) (1.30 MB) #> ✔ Got ps 1.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) (392.88 kB) #> ✔ Got pkgcache 2.2.2 (x86_64-pc-linux-gnu-ubuntu-22.04) (927.93 kB) #> ✔ Got zip 2.3.1 (x86_64-pc-linux-gnu-ubuntu-22.04) (636.87 kB) #> ✔ Got jsonlite 1.8.8 (source) (1.05 MB) #> ✔ Got pkgdepends 0.7.2.9000 (source) (716.47 kB) pdl$get_downloads() #> # A data frame: 27 × 40 #> ref type direct directpkg status package version license #> #> 1 r-lib/pkgdepends github TRUE TRUE OK pkgdep… 0.7.2.… MIT + … #> 2 callr stand… FALSE FALSE OK callr 3.7.6 MIT + … #> 3 cli stand… FALSE FALSE OK cli 3.6.2 MIT + … #> 4 curl stand… FALSE FALSE OK curl 5.2.1 MIT + … #> 5 desc stand… FALSE FALSE OK desc 1.4.3 MIT + … #> 6 filelock stand… FALSE FALSE OK filelo… 1.0.3 MIT + … #> 7 jsonlite stand… FALSE FALSE OK jsonli… 1.8.8 MIT + … #> 8 lpSolve stand… FALSE FALSE OK lpSolve 5.6.20 LGPL-2 #> 9 pkgbuild stand… FALSE FALSE OK pkgbui… 1.4.4 MIT + … #> 10 pkgcache stand… FALSE FALSE OK pkgcac… 2.2.2 MIT + … #> # ℹ 17 more rows #> # ℹ 32 more variables: needscompilation , priority , #> # md5sum , sha256 , filesize , built , #> # platform , rversion , repotype , repodir , #> # target , deps , mirror , sources , #> # remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , … # Method get_downloads() pdl <- new_pkg_download_proposal(\"pkgload\") pdl$resolve() pdl$download() #> ℹ Getting 7 pkgs (2.34 MB) and 14 pkgs with unknown sizes, 7 (1.16 MB) cached #> ✔ Got crayon 1.5.2 (source) (40.57 kB) #> ✔ Got glue 1.7.0 (source) (105.42 kB) #> ✔ Got rprojroot 2.0.4 (source) (59.95 kB) #> ✔ Cached copy of desc 1.4.3 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of callr 3.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Got pkgload 1.3.4 (source) (78.19 kB) #> ✔ Cached copy of cli 3.6.2 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of processx 3.8.4 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of pkgbuild 1.4.4 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of ps 1.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of R6 2.5.1 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Got withr 3.0.0 (source) (107.68 kB) #> ✔ Got crayon 1.5.2 (x86_64-pc-linux-gnu-ubuntu-22.04) (162.94 kB) #> ✔ Got pkgload 1.3.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (180.47 kB) #> ✔ Got rprojroot 2.0.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (107.18 kB) #> ✔ Got fs 1.6.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (309.52 kB) #> ✔ Got glue 1.7.0 (x86_64-pc-linux-gnu-ubuntu-22.04) (153.02 kB) #> ✔ Got withr 3.0.0 (x86_64-pc-linux-gnu-ubuntu-22.04) (242.10 kB) #> ✔ Got rlang 1.1.3 (source) (763.76 kB) #> ✔ Got fs 1.6.4 (source) (1.20 MB) #> ✔ Got rlang 1.1.3 (x86_64-pc-linux-gnu-ubuntu-22.04) (1.59 MB) pdl$get_downloads() #> # A data frame: 28 × 40 #> ref type direct directpkg status package version license #> #> 1 callr standard FALSE FALSE OK callr 3.7.6 MIT + file … #> 2 cli standard FALSE FALSE OK cli 3.6.2 MIT + file … #> 3 crayon standard FALSE FALSE OK crayon 1.5.2 MIT + file … #> 4 desc standard FALSE FALSE OK desc 1.4.3 MIT + file … #> 5 fs standard FALSE FALSE OK fs 1.6.4 MIT + file … #> 6 glue standard FALSE FALSE OK glue 1.7.0 MIT + file … #> 7 pkgbuild standard FALSE FALSE OK pkgbuild 1.4.4 MIT + file … #> 8 pkgload standard TRUE TRUE OK pkgload 1.3.4 GPL-3 #> 9 processx standard FALSE FALSE OK processx 3.8.4 MIT + file … #> 10 ps standard FALSE FALSE OK ps 1.7.6 MIT + file … #> # ℹ 18 more rows #> # ℹ 32 more variables: needscompilation , priority , #> # md5sum , sha256 , filesize , built , #> # platform , rversion , repotype , repodir , #> # target , deps , mirror , sources , #> # remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , … # Method print() pdl <- new_pkg_download_proposal(\"r-lib/pkgdepends\") pdl #> #> + refs: #> - r-lib/pkgdepends #> (use `$resolve()` to resolve dependencies) pdl$resolve() pdl #> #> + refs: #> - r-lib/pkgdepends #> + has resolution (+13 dependencies) #> (use `$download()` to download packages) #> (use `$get_resolution()` to see resolution results) pdl$download() #> ℹ Getting 14 pkgs with unknown sizes, 13 (3.80 MB) cached #> ✔ Cached copy of pkgdepends 0.7.2.9000 (source) is the latest build #> ✔ Cached copy of callr 3.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of desc 1.4.3 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of filelock 1.0.3 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of cli 3.6.2 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of curl 5.2.1 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of lpSolve 5.6.20 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of pkgbuild 1.4.4 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of processx 3.8.4 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of jsonlite 1.8.8 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of pkgcache 2.2.2 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of ps 1.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of zip 2.3.1 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of R6 2.5.1 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build pdl #> #> + refs: #> - r-lib/pkgdepends #> + has resolution (+13 dependencies) #> + has downloads #> (use `$get_resolution()` to see resolution results) #> (use `$get_downloads()` to get download data)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_downloads.html","id":null,"dir":"Reference","previous_headings":"","what":"Package downloads — pkg_downloads","title":"Package downloads — pkg_downloads","text":"pkg_download_proposal pkg_installation_proposal classes download methods, downloads package files configured directory (see 'Configuration').","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_downloads.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Package downloads — pkg_downloads","text":"return pkg_download_result object, data frame, adds extra columns pkg_resolution_result (pkg_download_proposal) pkg_solution_result (pkg_installation_proposal): built: Built field DESCRIPTION file binary packages, information available. cache_status: whether package file package cache. NA installed:: package refs. dep_types: character vector dependency types considered package. (list column.) deps: dependencies package, data frame. See \"Package dependency tables\" . direct: whether package (ref, really) directly specified, added dependency. error: list column contains error objects refs pkgdepends failed resolve. filesize: file size bytes, NA information available. license: license package, NA available. md5sum: MD5 checksum package file, available, NA . metadata: named character vector. fields () added installed DESCRIPTION file package. mirror: URL CRAN(-like) mirror site metadata obtained . NA non-CRAN-like sources, e.g. local files, installed packages, GitHub, etc. needscompilation: whether package needs compilation. package: package name. priority: \"base\" base packages, \"recommended\" recommended packages, NA otherwise. ref: package reference. remote: parsed remote_ref objects, see parse_pkg_refs(). list column. repodir: directory package CRAN-like repository. sha256: SHA256 hash package file, available, otherwise NA. sources: URLs package can downloaded . necessarily URL can download HTTP client. E.g. local:: refs path, git:: refs URL git. zero length vector installed:: refs. status: status dependency resolution, \"OK\" \"FAILED\". target: path package saved CRAN-repository. type: ref type. version: package version. fulltarget: absolute path downloaded file. one fulltarget fulltarget_tree must exist disk. fulltarget_tree: absolute path package tree directory. one fulltarget fulltarget_tree must exist disk. download_status: \"\" \"Got\", depending whether file obtained cache. download_error: error object failed downloads. file_size: Size file, NA. installed:: refs, NA, also NA refs created fulltarget_tree instead fulltarget. fulltarget, exists, contains packaged (via R CMD build) source R package. fulltarget_tree exists, package tree directory, still needs R CMD build call. Additional columns might present. either used internally experimental. might removed changed time. columns type character, except direct (logical), needscompilation (logical), filesize (integer), deps (list column, see \"Package dependency tables\" ), sources (list character vectors), remote (list), error (list), metadata (list), dep_types (list).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_downloads.html","id":"package-dependency-tables","dir":"Reference","previous_headings":"","what":"Package dependency tables","title":"Package downloads — pkg_downloads","text":"package dependency tables deps list column five columns currently: ref: package ref dependency. type: dependency type, lowercase. .e. imports, suggests, etc. package: package name dependency. op: operator version requirements, e.g. >=. version: version number, version requirements.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":null,"dir":"Reference","previous_headings":"","what":"R6 class for installation from a lock file — new_pkg_installation_plan","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"installation plan similar installation proposal (.e. pkg_installation_proposal), already contains solved dependencies, complete download URLs.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"new_pkg_installation_plan(lockfile = \"pkg.lock\", config = list(), ...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"lockfile Path lock file use. config Configuration options, named list. See 'Configuration'. include library, .libPaths()[1] added library. ... Additional arguments, passed pkg_installation_plan$new().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"new_pkg_installation_plan() returns pkg_installation_plan object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"Typically create pkg_installation_plan object new_pkg_installation_plan() call $download() method download packages $install() method install .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"super-class","dir":"Reference","previous_headings":"","what":"Super class","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"pkgdepends::pkg_installation_proposal -> pkg_installation_plan","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"methods","dir":"Reference","previous_headings":"","what":"Methods","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"pkgdepends::pkg_installation_proposal$async_download() pkgdepends::pkg_installation_proposal$create_lockfile() pkgdepends::pkg_installation_proposal$download() pkgdepends::pkg_installation_proposal$draw() pkgdepends::pkg_installation_proposal$get_config() pkgdepends::pkg_installation_proposal$get_downloads() pkgdepends::pkg_installation_proposal$get_install_plan() pkgdepends::pkg_installation_proposal$get_refs() pkgdepends::pkg_installation_proposal$get_resolution() pkgdepends::pkg_installation_proposal$get_solution() pkgdepends::pkg_installation_proposal$get_sysreqs() pkgdepends::pkg_installation_proposal$install() pkgdepends::pkg_installation_proposal$install_sysreqs() pkgdepends::pkg_installation_proposal$print() pkgdepends::pkg_installation_proposal$show_solution() pkgdepends::pkg_installation_proposal$show_sysreqs() pkgdepends::pkg_installation_proposal$stop_for_download_error() pkgdepends::pkg_installation_proposal$stop_for_solution_error()","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"public-methods","dir":"Reference","previous_headings":"","what":"Public methods","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"pkg_installation_plan$new() pkg_installation_plan$resolve() pkg_installation_plan$async_resolve() pkg_installation_plan$get_solve_policy() pkg_installation_plan$set_solve_policy() pkg_installation_plan$solve() pkg_installation_plan$update() pkg_installation_plan$update_sysreqs() pkg_installation_plan$format() pkg_installation_plan$clone()","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-new-","dir":"Reference","previous_headings":"","what":"Method new()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"Create new pkg_installation_plan object. Consider using new_pkg_installation_plan() instead calling constructor directly. returned object can used download install packages, according plan.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$new( lockfile = \"pkg.lock\", config = list(), remote_types = NULL )"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"arguments-1","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"lockfile Path lock file use. config Configuration options. See 'Configuration'. needs include package library install , library. remote_types Custom remote ref types, advanced use, experimental currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-resolve-","dir":"Reference","previous_headings":"","what":"Method resolve()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"function implemented installation plans, error.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-1","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-async-resolve-","dir":"Reference","previous_headings":"","what":"Method async_resolve()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"function implemented installation plans, error.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-2","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$async_resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-get-solve-policy-","dir":"Reference","previous_headings":"","what":"Method get_solve_policy()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"Installation plans already solved, method return NA_character_, always.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-3","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$get_solve_policy()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-set-solve-policy-","dir":"Reference","previous_headings":"","what":"Method set_solve_policy()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"function implemented installation plans, error.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-4","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$set_solve_policy()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-solve-","dir":"Reference","previous_headings":"","what":"Method solve()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"function implemented installation plans, error.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-5","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$solve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-update-","dir":"Reference","previous_headings":"","what":"Method update()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"Update plan current state library. library changed since plan created, nothing. new packages installed, might necessary download install packages plan.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-6","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$update()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"details-1","dir":"Reference","previous_headings":"","what":"Details","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"operation different creating new proposal updated library, uses packages package versions original plan. E.g. library newer version package, $update() downgrade version plan.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-update-sysreqs-","dir":"Reference","previous_headings":"","what":"Method update_sysreqs()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"Update information installed missing system requirements.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-7","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$update_sysreqs()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-format-","dir":"Reference","previous_headings":"","what":"Method format()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"Format pkg_installation_plan object, typically printing.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-8","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$format(...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"arguments-2","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"... used currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"returns","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"character vector, element line printout.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-clone-","dir":"Reference","previous_headings":"","what":"Method clone()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"objects class cloneable method.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-9","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$clone(deep = FALSE)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"arguments-3","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"deep Whether make deep clone.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":null,"dir":"Reference","previous_headings":"","what":"R6 class for package download and installation. — new_pkg_installation_proposal","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Download install R packages, dependencies, various sources.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"new_pkg_installation_proposal(refs, config = list(), ...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"refs Package names references. See 'Package references' syntax. config Configuration options, named list. See 'Configuration'. include library, .libPaths()[1] added library. ... Additional arguments, passed pkg_installation_proposal$new().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"new_pkg_installation_proposal() returns new pkg_installation_proposal object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"new_pkg_installation_proposal() creates new object pkg_installation_proposal class. advantage new_pkg_installation_proposal() compared using pkg_installation_proposal constructor directly avoids making pkgdepends build time dependency. Typical workflow install set packages: Create pkg_installation_proposal object new_pkg_installation_proposal(). Resolve possible dependencies pkg_installation_proposal$resolve(). Solve package dependencies, get installation plan, pkg_installation_proposal$solve(). Download files pkg_installation_proposal$download(). Install downloaded files pkg_installation_proposal$install().","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"public-methods","dir":"Reference","previous_headings":"","what":"Public methods","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_installation_proposal$new() pkg_installation_proposal$get_refs() pkg_installation_proposal$get_config() pkg_installation_proposal$resolve() pkg_installation_proposal$async_resolve() pkg_installation_proposal$get_resolution() pkg_installation_proposal$get_solve_policy() pkg_installation_proposal$set_solve_policy() pkg_installation_proposal$solve() pkg_installation_proposal$get_solution() pkg_installation_proposal$show_solution() pkg_installation_proposal$get_sysreqs() pkg_installation_proposal$show_sysreqs() pkg_installation_proposal$stop_for_solution_error() pkg_installation_proposal$create_lockfile() pkg_installation_proposal$draw() pkg_installation_proposal$download() pkg_installation_proposal$async_download() pkg_installation_proposal$get_downloads() pkg_installation_proposal$stop_for_download_error() pkg_installation_proposal$install() pkg_installation_proposal$install_sysreqs() pkg_installation_proposal$get_install_plan() pkg_installation_proposal$format() pkg_installation_proposal$print() pkg_installation_proposal$clone()","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-new-","dir":"Reference","previous_headings":"","what":"Method new()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Create new pkg_installation_proposal object. Consider using new_pkg_installation_proposal() instead calling constructor directly. returned object can used look (recursive) dependencies R packages various sources, download install package files.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$new( refs, config = list(), policy = c(\"lazy\", \"upgrade\"), remote_types = NULL )"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments-1","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"refs Package names references. See 'Package references' syntax. config Configuration options, named list. See 'Configuration'. needs include package library install , library. policy Solution policy. See 'dependency solver'. remote_types Custom remote ref types, advanced use, experimental currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-get-refs-","dir":"Reference","previous_headings":"","what":"Method get_refs()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"package refs used create pkg_installation_proposal object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-1","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_refs()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"character vector package refs used create pkg_installation_proposal object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-get-config-","dir":"Reference","previous_headings":"","what":"Method get_config()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Configuration options pkg_installation_proposal object. See 'Configuration' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-2","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_config()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-1","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Named list. See 'Configuration' configuration options.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-resolve-","dir":"Reference","previous_headings":"","what":"Method resolve()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Resolve dependencies specified package references. usually means downloading metadata CRAN Bioconductor, unless already cached, also GitHub GitHub refs included, either directly indirectly. See 'Dependency resolution' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-3","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-2","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_installation_proposal object, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-async-resolve-","dir":"Reference","previous_headings":"","what":"Method async_resolve()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"resolve(), asynchronous. method advanced use.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-4","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$async_resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-3","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"deferred value.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-get-resolution-","dir":"Reference","previous_headings":"","what":"Method get_resolution()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Query result dependency resolution. method can called resolve() completed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-5","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_resolution()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-4","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_resolution_result object, also data frame. See 'Dependency resolution' columns.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-get-solve-policy-","dir":"Reference","previous_headings":"","what":"Method get_solve_policy()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Returns current policy dependency solver. See 'dependency solver' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-6","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_solve_policy()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-5","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"character vector length one.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-set-solve-policy-","dir":"Reference","previous_headings":"","what":"Method set_solve_policy()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Set current policy dependency solver. object already contains solution new policy different old policy, solution deleted. See 'dependency solver' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-7","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$set_solve_policy(policy = c(\"lazy\", \"upgrade\"))"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments-2","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"policy Policy set.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-solve-","dir":"Reference","previous_headings":"","what":"Method solve()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Solve package dependencies. resolved dependencies, works set packages, can installed together create functional installation. set includes directly specified packages, required (suggested, depending configuration) packages well. includes every package . See 'dependency solver' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-8","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$solve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-6","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_installation_proposal object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-get-solution-","dir":"Reference","previous_headings":"","what":"Method get_solution()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Returns solution package dependencies.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-9","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_solution()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-7","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_solution_result object, list. See pkg_solution_result details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-show-solution-","dir":"Reference","previous_headings":"","what":"Method show_solution()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Show solution screen.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-10","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$show_solution(key = FALSE)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments-3","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"key Whether show key package list annotation.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-8","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_solution_result object, list. See pkg_solution_result details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-get-sysreqs-","dir":"Reference","previous_headings":"","what":"Method get_sysreqs()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Query categorize system requirements.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-11","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_sysreqs()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-show-sysreqs-","dir":"Reference","previous_headings":"","what":"Method show_sysreqs()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Show system requirements packages solution.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-12","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$show_sysreqs()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-stop-for-solution-error-","dir":"Reference","previous_headings":"","what":"Method stop_for_solution_error()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Error dependency solver failed find consistent set packages can installed together.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-13","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$stop_for_solution_error()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-create-lockfile-","dir":"Reference","previous_headings":"","what":"Method create_lockfile()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Create lock file contains information perform installation later, possibly another R session.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-14","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$create_lockfile(path = \"pkg.lock\", version = 1)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments-4","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"path Name lock file. default pkg.lock current working directory. version version 1 supported currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"details-1","dir":"Reference","previous_headings":"","what":"Details","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Note, since URLs CRAN CRAN-like repositories change time, practice perform plan lock file much later. example, binary packages older package version removed, found. Similarly, url:: remote types, URL might hold updated version package, compared lock file created. happen, pkgdepends prints warning, try continue installation. installation might fail updated package different (e.g. new) dependencies. Currently intended use case lock files CI systems, facilitate caching. (hash ) lock file provides good key caching systems.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-draw-","dir":"Reference","previous_headings":"","what":"Method draw()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Draw tree package dependencies. returns tree object, see cli::tree(). Printing object prints dependency tree screen.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-15","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$draw()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-9","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"tree object cli package, see cli::tree().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-download-","dir":"Reference","previous_headings":"","what":"Method download()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Download packages part solution. uses package cache pkgcache package default, avoid downloads possible.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-16","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$download()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-10","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_installation_proposal object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-async-download-","dir":"Reference","previous_headings":"","what":"Method async_download()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"download(), asynchronous. method advanced use.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-17","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$async_download()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-11","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"deferred value.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-get-downloads-","dir":"Reference","previous_headings":"","what":"Method get_downloads()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Returns summary package downloads.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-18","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_downloads()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-12","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_download_result object, list. See pkg_download_result details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-stop-for-download-error-","dir":"Reference","previous_headings":"","what":"Method stop_for_download_error()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Throw error downloads failed recent pkg_installation_proposal$download() call.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-19","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$stop_for_download_error()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-install-","dir":"Reference","previous_headings":"","what":"Method install()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Install downloaded packages. calls install_package_plan().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-20","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$install()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-13","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"return value install_package_plan().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-install-sysreqs-","dir":"Reference","previous_headings":"","what":"Method install_sysreqs()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Install system requirements. nothing system requirements turned . Create installation plan downloaded packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-21","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$install_sysreqs()"},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-22","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_install_plan()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-14","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"installation plan, see 'Installation plans' format.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-format-","dir":"Reference","previous_headings":"","what":"Method format()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Format pkg_installation_proposal object, typically printing.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-23","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$format(...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments-5","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"... used currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-15","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"character vector, element line printout.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-print-","dir":"Reference","previous_headings":"","what":"Method print()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Prints pkg_installation_proposal object screen. printout includes: package refs. policy dependency solver. Whether object solved dependencies. Whether solution errors. Whether object downloads. Whether downloads errors. Advice methods call next. See example .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-24","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$print(...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments-6","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"... used currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-16","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_installation_proposal object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-clone-","dir":"Reference","previous_headings":"","what":"Method clone()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"objects class cloneable method.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-25","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$clone(deep = FALSE)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments-7","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"deep Whether make deep clone.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"if (FALSE) { pdi <- new_pkg_installation_proposal( \"pak\", config = list(library = tempfile()) ) pdi pdi$resolve() pdi pdi$solve() pdi pdi$download() pdi } pdi <- new_pkg_installation_proposal( \"r-lib/pkgdepends\", config = list(library = tempfile())) #> ℹ Creating library directory: /tmp/RtmpoTKrbB/file1ba836b5ddc8 pdi #> #> + refs: #> - r-lib/pkgdepends #> + solution policy: lazy #> (use `$solve()` to solve dependencies) pdi <- new_pkg_installation_proposal(\"r-lib/pkgdepends\") pdi$get_refs() #> [1] \"r-lib/pkgdepends\" pdi <- new_pkg_installation_proposal( \"pak\", config = list(library = tempfile()) ) #> ℹ Creating library directory: /tmp/RtmpoTKrbB/file1ba877f94ab2 pdi$get_config() #> # pkg config #> ## build_vignettes #> #> [1] FALSE #> #> ## sysreqs_verbose #> #> [1] TRUE #> #> ## sysreqs_db_update #> #> [1] TRUE #> #> ## metadata_cache_dir #> #> [1] \"/tmp/RtmpoTKrbB/file1ba8e294040\" #> #> ## platforms #> #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" \"source\" #> #> ## goal #> #> [1] \"install\" #> #> ## r_versions #> #> [1] \"4.4.0\" #> #> ## cache_dir #> #> [1] \"/tmp/RtmpoTKrbB/file1ba86434d345\" #> #> ## library #> #> [1] \"/tmp/RtmpoTKrbB/file1ba877f94ab2\" #> #> ## metadata_update_after #> #> Time difference of 24 hours #> #> ## include_linkingto #> #> [1] FALSE #> #> ## sysreqs_rspm_repo_id #> #> [1] \"1\" #> #> ## sysreqs_update #> #> [1] TRUE #> #> ## package_cache_dir #> #> NULL #> #> ## sysreqs_rspm_url #> #> [1] \"https://packagemanager.posit.co\" #> #> ## sysreqs_sudo #> #> [1] TRUE #> #> ## sysreqs_db_update_timeout #> #> Time difference of 5 secs #> #> ## sysreqs_lookup_system #> #> [1] TRUE #> #> ## git_submodules #> #> [1] FALSE #> #> ## sysreqs_platform #> #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" #> #> ## dependencies #> #> [1] \"Depends\" \"Imports\" \"LinkingTo\" #> #> ## sysreqs #> #> [1] TRUE #> #> ## sysreqs_dry_run #> #> [1] FALSE #> #> ## windows_archs #> #> [1] \"prefer-x64\" #> #> ## use_bioconductor #> #> [1] TRUE #> #> ## cran_mirror #> #> CRAN #> \"https://cran.rstudio.com\" #> if (FALSE) { pdi <- new_pkg_installation_proposal( \"pak\", config = list(library = tempfile()) ) pdi$resolve() pdi$get_resolution() } if (FALSE) { pdi <- new_pkg_installation_proposal( \"r-lib/pkgdepends\", config = list(library = tempfile()) ) pdi$resolve() pdi$get_resolution() } pdi <- new_pkg_installation_proposal( \"r-lib/pkgdepends\", config = list(library = tempfile()) ) #> ℹ Creating library directory: /tmp/RtmpoTKrbB/file1ba833cdef48 pdi$get_solve_policy() #> [1] \"lazy\" pdi$set_solve_policy(\"upgrade\") pdi$get_solve_policy() #> [1] \"upgrade\" pdi <- new_pkg_installation_proposal( \"r-lib/pkgdepends\", config = list(library = tempfile()) ) #> ℹ Creating library directory: /tmp/RtmpoTKrbB/file1ba83dd41750 pdi$get_solve_policy() #> [1] \"lazy\" pdi$set_solve_policy(\"upgrade\") pdi$get_solve_policy() #> [1] \"upgrade\" if (FALSE) { pdi <- new_pkg_installation_proposal( \"r-lib/pkgdepends\", config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$get_solution() } if (FALSE) { pdi <- new_pkg_installation_proposal( \"r-lib/pkgdepends\", config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$get_solution() } if (FALSE) { pdi <- new_pkg_installation_proposal( \"r-lib/pkgdepends\", config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$get_solution() pdi$show_solution() } if (FALSE) { # This is an error, because the packages conflict: pdi <- new_pkg_installation_proposal( c(\"r-lib/pak\", \"cran::pak\"), config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi # This fails: # pdi$stop_for_solution_error() } if (FALSE) { pdi <- new_pkg_installation_proposal( \"pak\", config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$draw() } if (FALSE) { pdi <- new_pkg_installation_proposal( c(\"r-lib/pak\", \"cran::pak\"), config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$download() pdi$get_downloads() } if (FALSE) { pdi <- new_pkg_installation_proposal( c(\"r-lib/pak\", \"cran::pak\"), config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$download() pdi$get_downloads() } if (FALSE) { pdi <- new_pkg_installation_proposal( \"pak\", config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$download() pdi$get_install_plan() } # Method print pdi <- new_pkg_installation_proposal( \"pak\", config = list(library = tempfile()) ) #> ℹ Creating library directory: /tmp/RtmpoTKrbB/file1ba849ddbb38 pdi #> #> + refs: #> - pak #> + solution policy: lazy #> (use `$solve()` to solve dependencies) pdi$resolve() pdi #> #> + refs: #> - pak #> + solution policy: lazy #> (use `$solve()` to solve dependencies) pdi$solve() pdi #> #> + refs: #> - pak #> + solution policy: lazy #> + has solution #> (use `$download()` to download packages) #> (use `$show_solution()` to see the packages to install #> (use `$get_solution()` to see the full solution results) #> (use `$draw()` to draw the dependency tree) #> (use `$create_lockfile()` to write a lock file) pdi$download() #> ℹ Getting 1 pkg with unknown size #> ✔ Got pak 0.7.2 (x86_64-pc-linux-gnu-ubuntu-22.04) (5.81 MB) pdi #> #> + refs: #> - pak #> + solution policy: lazy #> + has solution #> + has downloads #> (use `$show_solution()` to see the packages to install #> (use `$get_solution()` to see the full solution results) #> (use `$draw()` to draw the dependency tree) #> (use `$create_lockfile()` to write a lock file) #> (use `$get_downloads()` to get download data) #> (use `$get_install_plan()` to get the installation plan) #> (use `$install()` to install the packages)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":null,"dir":"Reference","previous_headings":"","what":"Check if an R package name is available. — pkg_name_check","title":"Check if an R package name is available. — pkg_name_check","text":"Additionally, look candidate name number dictionaries, make sure negative meaning.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check if an R package name is available. — pkg_name_check","text":"","code":"pkg_name_check(name, dictionaries = NULL)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check if an R package name is available. — pkg_name_check","text":"name Package name candidate. dictionaries Character vector, dictionaries query. Available dictionaries: * wikipedia * wiktionary, * sentiment (https://github.com/fnielsen/afinn), * urban (Urban Dictionary). NULL (default), Urban Dictionary omitted, often offensive.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check if an R package name is available. — pkg_name_check","text":"pkg_name_check object custom print method.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"valid-package-name-check","dir":"Reference","previous_headings":"","what":"Valid package name check","title":"Check if an R package name is available. — pkg_name_check","text":"Check validity name package name. See 'Writing R Extensions' allowed package names. Also checked list names known cause problems.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"cran-checks","dir":"Reference","previous_headings":"","what":"CRAN checks","title":"Check if an R package name is available. — pkg_name_check","text":"Check name names past current packages CRAN, including base recommended packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"bioconductor-checks","dir":"Reference","previous_headings":"","what":"Bioconductor checks","title":"Check if an R package name is available. — pkg_name_check","text":"Check name past current Bioconductor packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"profanity-check","dir":"Reference","previous_headings":"","what":"Profanity check","title":"Check if an R package name is available. — pkg_name_check","text":"Check name https://www.purgomalum.com/service/containsprofanity make sure profanity.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"dictionaries","dir":"Reference","previous_headings":"","what":"Dictionaries","title":"Check if an R package name is available. — pkg_name_check","text":"See dictionaries argument.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check if an R package name is available. — pkg_name_check","text":"","code":"pkg_name_check(\"cli\") #> ╔════════════════════════════════════════════════════════════════════════╗ #> ║ –*– cli –*– ║ #> ╚════════════════════════════════════════════════════════════════════════╝ #> ┌────────────────────────────────────────────────────────────────────────┐ #> │ ✔ valid name ✖ CRAN ✔ Bioconductor │ #> │ ✔ not a profanity │ #> └────────────────────────────────────────────────────────────────────────┘ #> ┌ Wikipedia ─────────────────────────────────────────────────────────────┐ #> │ CLI (from Cli) CLI may refer to multiple articles, see link. │ #> └───────────────────────────────────── https://en.wikipedia.org/wiki/CLI ┘ #> ┌ Wiktionary ────────────────────────────────────────────────────────────┐ #> │ cli No English definition found │ #> └──────────────────────────────────── https://en.wiktionary.org/wiki/cli ┘ #> ┌────────────────────────────────────────────────────────────────────────┐ #> │ Sentiment: :| (0) │ #> └────────────────────────────────────────────────────────────────────────┘"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":null,"dir":"Reference","previous_headings":"","what":"Package references — pkg_refs","title":"Package references — pkg_refs","text":"package reference (ref) specifies location R package can obtained . full syntax reference type::ref, type can often omitted, common ref types shortcuts.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"package-references","dir":"Reference","previous_headings":"","what":"Package references","title":"Package references — pkg_refs","text":"Many pkgdepends pak functions take package names arguments. E.g. pak::pkg_install() takes names packages install, pak::pkg_deps_tree() takes names packages draw dependency trees . function can also take generic package reference instead package name. package reference also tells pkgdepends find package, package source. specify package source, use name prefix, :: separator. E.g. cran::mypkg means mypkg package CRAN. package name special package reference, implicitly specifies configured CRAN(-like) repositories package source. (call standard package source.) mypkg equivalent standard::mypkg pak look mypkg configured CRAN-like repositories. explicitly specify CRAN-like repositories (e.g. options(\"repos\")), pak uses CRAN Bioconductor repositories default. list currently supported package sources. discuss detail . cran: CRAN package. bioc: Bioconductor package. standard: package configured CRAN-like repository. github: package GitHub. gitlab: package GitLab. git: package git repository. local: local package file directory. url: URL points package archive. installed installed package. deps dependencies local package file directory. special reference type accepts package source. See . param special reference change references downloaded installed. See \"Parameters\" .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"shorthands","dir":"Reference","previous_headings":"","what":"Shorthands","title":"Package references — pkg_refs","text":"save typing, always need fully specify package source package reference. seen package name implicitly standard package source. complete rules shorthands, order applied: ref valid package name, package name @ version specification, standard package source used. E.g. pkg equivalent standard::pkg pkg@1.0 equivalent standard::pkg@1.0. ref valid github ref type without github:: prefix, github used. E.g. user/repo equivalent github::user/repo user/repo@tag equivalent github::user/repo@tag, etc. ref GitHub URL (see ) without github:: prefix, github used. ref path starts . / \\ ~ local used. (pkgdepends check path exists.) package reference form =?, special param type. See \"Parameters\" . package reference explicit package source, package source determined rules, pkgdepends throws error.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"package-names","dir":"Reference","previous_headings":"","what":"Package names","title":"Package references — pkg_refs","text":"pkgdepends looking dependencies package, needs able determine name dependency package reference. sometimes easy dependencies Remotes (similar) fields. github:: gitlab:: dependencies pkgdepends assumes package name name repository. hold, need specify package name explicitly, using = prefix. E.g. pins=rstudio/pins-r. specify package source type package name, package name comes first: pins=github::rstudio/pins-r. git:: dependencies, pkgdepends assumes package name last component repository. hold, need specify package name explicitly, using = prefix. E.g. pins=git::https://github.com/rstudio/pins-r. local:: dependencies, always need specify package name explicitly. E.g. pins=local::~/works/pins. url:: dependencies, always need specify package name explicitly. E.g. ggplot2=url::https://cloud.r-project.org/src/contrib/....","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"parameters","dir":"Reference","previous_headings":"","what":"Parameters","title":"Package references — pkg_refs","text":"Package references may optional parameters, added question mark. Different parameters separated ampersand (&) character. (similar HTTP URLs take query parameters.) Parameters may flags turn behavior, can string value, assigned equal sign (=). value assigned, assume true value. example two package refs equivalent:","code":"cran::testthat?source&nocache cran::testthat?source=true&nocache=true"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"parameters-for-downstream-packages","dir":"Reference","previous_headings":"","what":"Parameters for downstream packages","title":"Package references — pkg_refs","text":"pkgdepends allows specifying parameters downstream packages, using =? special package reference, package name package, parameters, . useful want add parameter downstream dependency. example, install ggplot2, always reinstall cli package dependency use ggplot2 cli=?reinstall package references. latter tells pkgdepends always reinstall cli, even already installed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"currently-supported-parameters","dir":"Reference","previous_headings":"","what":"Currently supported parameters","title":"Package references — pkg_refs","text":"ignore flag parameter. specified, package ignored. usually makes sense packagename=?ignore form, ignore downstream soft dependency. versions hard dependency ignored lead solution error. ignore--r version number parameter. package ignored R versions older specified one. E.g. Matrix=?ignore--r=4.1.2 ignore Matrix package R versions older 4.1.2. parameter really makes sense packgename=?ignore form. ignore-unavailable flag. can specified soft dependencies. specified package available, ignored. parameter really makes sense packagename=?ignore-unavailable form. source flag parameter. specified, source R package requested CRAN-like repository. package installations source always triggers re-install. words, source implies reinstall parameter. parameter supported bioc::, cran:: standard:: remote types, ignored others. reinstall requests re-install package installations. supported bioc::, cran::, git::, github::, gitlab::, local::, standard::, url:: remote types. nocache ignore package cache. always download package file, add downloaded (built) package(s) package cache. supported bioc::, cran::, git::, github::, gitlab::, standard:: url:: remote types.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"cran-packages-cran-","dir":"Reference","previous_headings":"","what":"CRAN packages (cran::)","title":"Package references — pkg_refs","text":"package CRAN. Full syntax: valid package name. version version requirement. Examples: Note: pkgdepends currently parses version specification part (everything @), use .","code":"[cran::][@[>=] | @current | @last] forecast forecast@8.8 forecast@>=8.8 cran::forecast forecast@last forecast@current"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"bioconductor-packages-bioc-","dir":"Reference","previous_headings":"","what":"Bioconductor packages (bioc::)","title":"Package references — pkg_refs","text":"package Bioconductor. syntax CRAN packages, except prefix.","code":"[bioc::][@[>=] | @current | @last]"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"standard-packages-standard-","dir":"Reference","previous_headings":"","what":"Standard packages (standard::)","title":"Package references — pkg_refs","text":"packages either CRAN Bioconductor, full syntax CRAN packages, except prefix:","code":"[standard::][@[>=] | current | last]"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"github-packages-github-","dir":"Reference","previous_headings":"","what":"GitHub packages (github::)","title":"Package references — pkg_refs","text":"Packages GitHub repository. Full syntax: name package. missing, name repository used. GitHub username organization name. name repository. optional subdirectory, package within subdirectory repository. specifies certain version package, see . may specify: git branch, tag (prefix ) commit hash: @; pull request: #; latest release: @*release. missing, latest commit default branch used. Examples: convenience GitHub HTTP URLs can also used specify package GitHub. Examples: GitHub remote string can also used instead URL, example: git@github.com:r-lib/pak.git","code":"[=][github::]/[/][] r-lib/crayon github::r-lib/crayon r-lib/crayon@84be6207 r-lib/crayon@branch r-lib/crayon#41 r-lib/crayon@release https://github.com/r-lib/withr # A branch: https://github.com/r-lib/withr/tree/ghactions # A tag: https://github.com/r-lib/withr/tree/v2.1.1 # A commit: https://github.com/r-lib/withr/commit/8fbcb548e316 # A pull request: https://github.com/r-lib/withr/pull/76 # A release: https://github.com/r-lib/withr/releases/tag/v2.1.0"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"gitlab-packages-gitlab-","dir":"Reference","previous_headings":"","what":"GitLab packages (gitlab::)","title":"Package references — pkg_refs","text":"Packages GitLab repository. Full syntax: name package. missing, name repository used. typically GitLab username group name, may contain subgroups. name repository, project GitLab terminology. optional subdirectory, package within subdirectory repository. Note GitLab, must come /- prefix, able distinguish subgroups. may specify git branch, tag (prefix ) commit hash. missing, latest commit default branch used. gitlab:: supports git submodules, see git-submodules configuration entry. Examples:","code":"[=][github::]/[/-/][] gitlab::gaborcsardi/cli gitlab::r-hub/filelock@main gitlab::group/subgroup/subsubgroup/project/-/subdir@ref"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"packages-in-git-repositories-git-","dir":"Reference","previous_headings":"","what":"Packages in git repositories (git::)","title":"Package references — pkg_refs","text":"Full syntax: name package. missing, last component used. host name path git repository. git repositories need .git suffix , others forgiving. specifies certain version package: git branch, tag (prefix ) commit hash: @. missing, latest commit default branch used. git:: supports git submodules, see git-submodules configuration entry. Examples: Note pkgdepends built-git client, require system git installation. system git installed, pkgdepends use credentials stored configured git credential store, automatically, via gitcreds package.","code":"[=]git::https?://[] git::https://github.com/r-lib/crayon git::https://github.com/r-lib/crayon.git git::https://github.com/r-lib/crayon.git@84be6207 git::https://github.com/r-lib/crayon.git@branch git::https://gitlab.com/gaborcsardi/cli.git"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"local-packages-local-","dir":"Reference","previous_headings":"","what":"Local packages (local::)","title":"Package references — pkg_refs","text":"path refers package file built R CMD build, directory contains package. Full syntax: brevity, can omit local:: prefix, specify absolute path, path user's home directory, starting ~, relative path starting ./ .\\\\. single dot (\".\") considered local package current working directory. Examples: specify local package dependency (.e. DESCRIPTION), also need specify name package, see \"Package names\" .","code":"local:: local::/foo/bar/package_1.0.0.tar.gz local::/foo/bar/pkg local::. /absolute/path/package_1.0.0.tar.gz ~/path/from/home ./relative/path ."},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"urls-url-","dir":"Reference","previous_headings":"","what":"URLs (url::)","title":"Package references — pkg_refs","text":"can use url:: refer URLs hold R package archives (.e. properly built R CMD build), compressed directories package trees (.e. built R CMD build). pkgdepends figure needs run R CMD build package first. remote type supports .tar.gz .zip files. Note URLs ideal remote types, pkgdepends needs download package file resolve dependencies. happens, puts package file cache, downloads needed installing package later. Examples: specify package URL dependency (.e. DESCRIPTION), also need specify name package, see \"Package names\" .","code":"url::https://cloud.r-project.org/src/contrib/Archive/cli/cli_1.0.0.tar.gz url::https://github.com/tidyverse/stringr/archive/HEAD.zip"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"installed-packages-installed-","dir":"Reference","previous_headings":"","what":"Installed packages (installed::)","title":"Package references — pkg_refs","text":"usually used internally, can also used directly. Full syntax: library package installed . package name. Example:","code":"installed::/ installed::~/R/3.6/crayon"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"package-dependencies-deps-","dir":"Reference","previous_headings":"","what":"Package dependencies (deps::)","title":"Package references — pkg_refs","text":"Usually used internally, specifies dependencies local package. can used download install dependencies package, without downloading installing package . Full syntax: Examples:","code":"deps:: deps::/foo/bar/package_1.0.0.tar.gz deps::/foo/bar/pkg deps::."},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"any-packages","dir":"Reference","previous_headings":"","what":"any:: packages","title":"Package references — pkg_refs","text":"Sometimes need install additional packages, mind installed . example. want install cli GitHub, r-lib/cli. also want install glue, mind version glue installed, long compatible requested cli version. cli specifies development version glue, fine. cli fine CRAN version glue, OK, . future version cli depend glue, still want glue installed, CRAN. :: reference type exactly . example might write first, fail rlib/cli requests (say) tidyverse/glue, pkg_install() \"glue\" interpreted \"standard::glue\", creating conflict tidyverse/glue. hand works, independently glue version requested cli.","code":"pak::pkg_install(c(\"glue\", \"r-lib/cli\")) pak::pkg_install(c(\"any::glue\", \"r-lib/cli\"))"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"parameter-refs-param-","dir":"Reference","previous_headings":"","what":"Parameter refs (param::)","title":"Package references — pkg_refs","text":"See \"Parameters\" .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"the-remotes-field","dir":"Reference","previous_headings":"","what":"The Remotes field","title":"Package references — pkg_refs","text":"DESCRIPTION file R package can mark regular dependency defined Depends, Imports, Suggests Enhances fields installed non-standard package source adding package reference Remotes entry. pkgdepends download install package specified location, instead CRAN-like repository. remote dependencies specified Remotes comma separated list package sources: Note still need add package one regular dependency fields, .e. Imports, Suggests, etc. concrete example specifies r-lib/glue package: CRAN Bioconductor repositories support Remotes field, need remove field, submitting package either .","code":"Remotes: , , [ ... ] Imports: glue Remotes: r-lib/glue, r-lib/httr@v0.4, klutometis/roxygen#142, r-lib/testthat@c67018fa4970"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":null,"dir":"Reference","previous_headings":"","what":"Dependency resolution — pkg_resolution","title":"Dependency resolution — pkg_resolution","text":"Collect information dependencies R packages, recursively.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Dependency resolution — pkg_resolution","text":"pkg_deps, pkg_download_proposal pkg_installation_proposal resolve dependencies recursively, obtain information packages needed specified package references.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"cran-and-bioconductor-packages","dir":"Reference","previous_headings":"","what":"CRAN and Bioconductor packages","title":"Dependency resolution — pkg_resolution","text":"Resolution currently start downloading CRAN Bioconductor metadata, date. CRAN, also download additional metadata, includes file sizes, SHA hashes, system requirements, \"built\" (binary packages) \"packaged\" time stamps. extra meta information updated daily currently, packages might incorrect missing.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"github-packages","dir":"Reference","previous_headings":"","what":"GitHub packages","title":"Dependency resolution — pkg_resolution","text":"GitHub packages, query download URL able download package later, also download DESCRIPTION file, learn dependencies.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"local-packages","dir":"Reference","previous_headings":"","what":"Local packages","title":"Dependency resolution — pkg_resolution","text":"local package files extract DESCRIPTION file, learn dependencies.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"the-remotes-field-in-description","dir":"Reference","previous_headings":"","what":"The remotes field in DESCRIPTION","title":"Dependency resolution — pkg_resolution","text":"support non-standard Remotes field package DESCRIPTION file. field may contain list package references dependencies specified one Depends, Includes, Suggests Enhances fields. syntax comma separated list package references.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"the-result","dir":"Reference","previous_headings":"","what":"The result","title":"Dependency resolution — pkg_resolution","text":"result resolution data frame information packages dependencies. built: Built field DESCRIPTION file binary packages, information available. cache_status: whether package file package cache. NA installed:: package refs. dep_types: character vector dependency types considered package. (list column.) deps: dependencies package, data frame. See \"Package dependency tables\" . direct: whether package (ref, really) directly specified, added dependency. error: list column contains error objects refs pkgdepends failed resolve. filesize: file size bytes, NA information available. license: license package, NA available. md5sum: MD5 checksum package file, available, NA . metadata: named character vector. fields () added installed DESCRIPTION file package. mirror: URL CRAN(-like) mirror site metadata obtained . NA non-CRAN-like sources, e.g. local files, installed packages, GitHub, etc. needscompilation: whether package needs compilation. package: package name. priority: \"base\" base packages, \"recommended\" recommended packages, NA otherwise. ref: package reference. remote: parsed remote_ref objects, see parse_pkg_refs(). list column. repodir: directory package CRAN-like repository. sha256: SHA256 hash package file, available, otherwise NA. sources: URLs package can downloaded . necessarily URL can download HTTP client. E.g. local:: refs path, git:: refs URL git. zero length vector installed:: refs. status: status dependency resolution, \"OK\" \"FAILED\". target: path package saved CRAN-repository. type: ref type. version: package version. Additional columns might present. either used internally experimental. might removed changed time. columns type character, except direct (logical), needscompilation (logical), filesize (integer), deps (list column, see \"Package dependency tables\" ), sources (list character vectors), remote (list), error (list), metadata (list), dep_types (list).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"package-dependency-tables","dir":"Reference","previous_headings":"","what":"Package dependency tables","title":"Dependency resolution — pkg_resolution","text":"package dependency tables deps list column five columns currently: ref: package ref dependency. type: dependency type, lowercase. .e. imports, suggests, etc. package: package name dependency. op: operator version requirements, e.g. >=. version: version number, version requirements.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"resolution-failures","dir":"Reference","previous_headings":"","what":"Resolution failures","title":"Dependency resolution — pkg_resolution","text":"resolution process stop error. Instead, failed resolutions return error object error column result data frame.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_rx.html","id":null,"dir":"Reference","previous_headings":"","what":"A set of handy regular expressions related to R packages — pkg_rx","title":"A set of handy regular expressions related to R packages — pkg_rx","text":"use R, make sure specify perl = TRUE, see base::grep().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_rx.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"A set of handy regular expressions related to R packages — pkg_rx","text":"","code":"pkg_rx()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_rx.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"A set of handy regular expressions related to R packages — pkg_rx","text":"named list strings.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_rx.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"A set of handy regular expressions related to R packages — pkg_rx","text":"Currently included: pkg_name: valid package name. type_cran: cran:: package reference. type_bioc: bioc:: package reference. type_standard: standard:: package reference. type_github: github:: package reference. type_git: git:: package reference. type_local: local:: package reference. type_deps: deps:: package reference. type_installed: installed:: package reference. github_username: GitHub username. github_repo: GitHub repository name. github_url: GitHub URL.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_rx.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"A set of handy regular expressions related to R packages — pkg_rx","text":"","code":"pkg_rx() #> $pkg_name #> [1] \"[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9]\" #> #> $type_cran #> [1] \"^(?:cran::)?(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])(?:@(?:(?:(?>=)?(?[0-9]+[-\\\\.][0-9]+(?:[-\\\\.][0-9]+)*|current|last))))?$\" #> #> $type_bioc #> [1] \"^(?:bioc::)?(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])(?:@(?:(?:(?>=)?(?[0-9]+[-\\\\.][0-9]+(?:[-\\\\.][0-9]+)*|current|last))))?$\" #> #> $type_standard #> [1] \"^(?:standard::)?(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])(?:@(?:(?:(?>=)?(?[0-9]+[-\\\\.][0-9]+(?:[-\\\\.][0-9]+)*|current|last))))?$\" #> #> $type_github #> [1] \"^(?:(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])=)?(?:github::)?(?(?:[a-zA-Z\\\\d](?:[a-zA-Z\\\\d-]){0,38}))/(?[^/@#]+)(?:/(?(?:[^@#]*[^@#/])/?))?(?:(?:(?:@(?[^*].*)))|(?:(?:#(?[0-9]+)))|(?:(?:@(?[*]release))))?$\" #> #> $type_git #> [1] \"^(?:(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])=)?(?:git::)(?:(?[^/]*)://)?(?[^/]+)(?[^@]*/)(?[^/@]*)(?:@(?.*))?\" #> #> $type_local #> [1] \"^(?:(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])=)?(?|local::(?.*)|(?(?:/|\\\\\\\\|~|[.]/|[.]\\\\\\\\|[.]$).*))$\" #> #> $type_deps #> [1] \"^(?:deps::)(?.*)$\" #> #> $type_installed #> [1] \"^(?:installed::)?(?.*)/(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])$\" #> #> $github_username #> [1] \"(?(?:[a-zA-Z\\\\d](?:[a-zA-Z\\\\d-]){0,38}))\" #> #> $github_repo #> [1] \"(?[^/@#]+)\" #> #> $github_url #> [1] \"^(?:(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])=)?(?:github::)?(?:(?:https?://)|(?:(?:ssh://|[^@]+@)))(?:[^/:]+)[/:](?(?:[a-zA-Z\\\\d](?:[a-zA-Z\\\\d-]){0,38}))/(?[^/@#]+?)(?)(?:[.]git)?(?:/(?:(?:(?:tree|commit|releases/tag)/(?.+$))|(?:pull/(?.+$))|(?:releases/)(?.+$)))?$\" #>"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_solution.html","id":null,"dir":"Reference","previous_headings":"","what":"The dependency solver — pkg_solution","title":"The dependency solver — pkg_solution","text":"dependency solver takes resolution information, works exact versions package must installed, version requirements satisfied.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_solution.html","id":"solution-policies","dir":"Reference","previous_headings":"","what":"Solution policies","title":"The dependency solver — pkg_solution","text":"dependency solver currently supports two policies: lazy upgrade. lazy policy prefers minimize installation time, perform package upgrades, unless version requirements require . upgrade policy prefers update package latest possible versions, still considers version requirements.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_solution.html","id":"the-integer-problem","dir":"Reference","previous_headings":"","what":"The integer problem","title":"The dependency solver — pkg_solution","text":"Solving package dependencies requires solving integer linear problem (ILP). subsection briefly describes problem represented integer problem, solution policies exactly mean. Every row package resolution candidate dependency solver. integer problem, every candidate corresponds binary variable. 1 candidate selected part solution, 0 otherwise. objective ILP minimization defined differently different solution policies. ILP conditions . lazy policy, installed:: packaged get 0 points, binary packages 1 point, sources packages 5 points. 'upgrade' policy, rank candidates given package according version numbers, assign points older versions. Points assigned 100 candidates equal versions get equal points. still prefer installed packages binaries source packages, also add 0 point already installed candidates, 1 extra points binaries 5 points source packages. directly specified refs, aim install package exactly . require variables corresponding package sum 1. non-direct refs (.e. dependencies), require variables corresponding package sum one. Since every candidate least 1 point objective function minimization problem, non-needed dependencies omitted. direct refs, require candidates satisfy references. means exactly depends ref types. E.g. CRAN packages, means CRAN candidate must selected. standard ref, GitHub candidate OK well. rule candidates dependency resolution failed. go dependency requirements rule packages meet . every package , requires package B, select B(, =1..k) candidates B satisfy 's requirements add - B(1) - ... - B(k) <= 0 rule. satisfy rule, either install , installed, one good B candidates must installed well. rule non-installed CRAN Bioconductor candidates packages already installed candidate exact version. also rule source CRAN Bioconductor candidates packages binary candidate exact version.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_solution.html","id":"explaining-why-the-solver-failed","dir":"Reference","previous_headings":"","what":"Explaining why the solver failed","title":"The dependency solver — pkg_solution","text":"able explain solution attempt failed, also add dummy variable directly required package. dummy variable large objective value, selected way install directly required package. failed solution, look dummy variables selected, see directly required package failed solve. check rule(s) ruled installation packages, dependencies, recursively.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_solution.html","id":"the-result","dir":"Reference","previous_headings":"","what":"The result","title":"The dependency solver — pkg_solution","text":"result solution pkg_solution_result object. named list entries: status: Status solution attempt, \"OK\" \"FAILED\". data: selected candidates. similar pkg_resolution_result object, two extra columns: lib_status: status package library, installation. Possible values: new (newly installed), current (date, installed), update (updated), -update (update, ). old_version: old (current) version package library, NA package currently installed. problem: ILP problem. exact representation implementation detail, informative print method. solution: return value internal solver.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":null,"dir":"Reference","previous_headings":"","what":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"pkgdepends toolkit package dependencies, downloads installations, used packages. looking package manager, see pak.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"features","dir":"Reference","previous_headings":"","what":"Features","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"Look package dependencies recursively. Visualize package dependencies. Download packages dependencies. Install downloaded packages. Includes dependency solver find consistent set dependencies. Supports CRAN Bioconductor packages automatically. Supports packages GitHub GitLab. Supports packages git repositories. Supports package bundles files web. Supports local package file trees. Supports Remotes entry DESCRIPTION file. Caches metadata downloaded packages via pkgcache Performs downloads HTTP queries concurrently. Builds installs packages parallel.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"install","dir":"Reference","previous_headings":"","what":"Install","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"Install package : need development version, install ","code":"install.packages(\"pkgdepends\") pak::pak(\"r-lib/pkgdepends\")"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"usage","dir":"Reference","previous_headings":"","what":"Usage","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"","code":"library(pkgdepends)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"package-references","dir":"Reference","previous_headings":"","what":"Package references","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"package reference (ref) specifies location R package can obtained . Examples: See “Package references” details.","code":"devtools cran::devtools bioc::Biobase r-lib/pkgdepends https://github.com/r-lib/pkgdepends local::~/works/shiny"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"package-dependencies","dir":"Reference","previous_headings":"","what":"Package dependencies","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"Dependencies development version cli package: See pkg_deps class details.","code":"pd <- new_pkg_deps(\"r-lib/pkgcache\") pd$solve() pd$draw() ## ✔ Loading metadata database ... done ## r-lib/pkgcache 2.1.0.9000 ✨👷🏽🔧 ## ├─callr 3.7.3 ✨ ⬇ (431.00 kB) ## │ ├─processx 3.8.1 ✨ ⬇ (316.20 kB) ## │ │ ├─ps 1.7.5 ✨ ⬇ (313.92 kB) ## │ │ └─R6 2.5.1 ✨ ## │ └─R6 ## ├─cli 3.6.1 ✨ ⬇ (1.38 MB) ## ├─curl 5.0.0 ✨ ⬇ (777.64 kB) ## ├─filelock 1.0.2 ✨ ⬇ (29.58 kB) ## ├─jsonlite 1.8.4 ✨ ⬇ (1.13 MB) ## ├─prettyunits 1.1.1 ✨ ⬇ (35.23 kB) ## ├─processx ## ├─R6 ## └─rappdirs 0.3.3 ✨ ⬇ (47.50 kB) ## ## Key: ✨ new | ⬇ download | 👷🏽 build | 🔧 compile"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"package-downloads","dir":"Reference","previous_headings":"","what":"Package downloads","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"Downloading dependencies package: See pkg_download_proposal class details.","code":"pdl <- new_pkg_download_proposal(\"r-lib/cli\") pdl$resolve() pdl$download() ## ℹ No downloads are needed, 1 pkg is cached ##"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"package-installation","dir":"Reference","previous_headings":"","what":"Package installation","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"Installing updating set package:","code":"lib <- tempfile() dir.create(lib) pdi <- new_pkg_installation_proposal( \"r-lib/cli\", config = list(library = lib) ) pdi$solve() pdi$download() pdi$install() ## ℹ No downloads are needed, 1 pkg is cached ## ✔ Installed cli 3.6.1.9000 (github::r-lib/cli@c37f34b) (36ms) ## ✔ Summary: ✨ 1 new in 36ms"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"dependency-resolution","dir":"Reference","previous_headings":"","what":"Dependency resolution","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"pkg_deps, pkg_download_proposal pkg_installation_proposal resolve dependencies recursively, obtain information packages needed specified package references. See “Dependency resolution” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"the-dependency-solver","dir":"Reference","previous_headings":"","what":"The dependency solver","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"dependency solver takes resolution information, works exact versions package must installed, version requirements satisfied. See “dependency solver” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"installation-plans","dir":"Reference","previous_headings":"","what":"Installation plans","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"pkg_installation_proposal can create installation plans, also install . also possible import installation plans created tools. See “Installation plans” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"configuration","dir":"Reference","previous_headings":"","what":"Configuration","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"details pkg_deps, pkg_download_proposal pkg_installation_proposal can tuned list configuration options. See “Configuration” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"related","dir":"Reference","previous_headings":"","what":"Related","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"pak – R package manager pkgcache – Metadata package cache devtools – Tools R package developers","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"code-of-conduct","dir":"Reference","previous_headings":"","what":"Code of Conduct","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"Please note pkgdepends project released Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"license","dir":"Reference","previous_headings":"","what":"License","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"MIT (c) RStudio","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"Maintainer: Gábor Csárdi csardi.gabor@gmail.com contributors: Posit Software, PBC [copyright holder, funder]","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_check_installed.html","id":null,"dir":"Reference","previous_headings":"","what":"Check if installed packages have all their system requirements — sysreqs_check_installed","title":"Check if installed packages have all their system requirements — sysreqs_check_installed","text":"sysreqs_check_installed() checks system requirements packages (subset packages) installed. sysreqs_fix_installed() installs missing system packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_check_installed.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check if installed packages have all their system requirements — sysreqs_check_installed","text":"","code":"sysreqs_check_installed(packages = NULL, library = .libPaths()[1]) sysreqs_fix_installed(packages = NULL, library = .libPaths()[1])"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_check_installed.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check if installed packages have all their system requirements — sysreqs_check_installed","text":"packages NULL, packages checked. package packages installed, pkgdepends throws warning. library Library libraries check.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_check_installed.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check if installed packages have all their system requirements — sysreqs_check_installed","text":"Data frame custom print format method, pkg_sysreqs_check_result class. columns : system_package: string, name required system package. installed: logical, whether system package correctly installed. packages: list column character vectors. names installed R packages need system package. pre_install: list column character vectors. Commands run installation system package. post_install: list column character vectors. Commands run installation system package. data frame also two attributes additional data: sysreqs_records: raw system requirements records, system_packages: list installed system packages. sysreqs_fix_packages() returns value, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_check_installed.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Check if installed packages have all their system requirements — sysreqs_check_installed","text":"functions use sysreqs_platform configuration option, see man_config_link(\"Configuration\"). Set pkgdepends detect platform correctly.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_check_installed.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check if installed packages have all their system requirements — sysreqs_check_installed","text":"","code":"# This only works on supported platforms sysreqs_check_installed() #> system package installed required by #> -------------- -- ----------- #> gsfonts ✔ magick #> imagemagick ✔ magick #> libcurl4-openssl-dev ✔ curl #> libfontconfig1-dev ✔ systemfonts #> libfreetype6-dev ✔ ragg, systemfonts, textshaping #> libfribidi-dev ✔ textshaping #> libharfbuzz-dev ✔ textshaping #> libjpeg-dev ✔ ragg #> libmagick++-dev ✔ magick #> libnode-dev ✔ V8 #> libpng-dev ✔ ragg, svglite #> libssl-dev ✔ curl, openssl #> libtiff-dev ✔ ragg #> libxml2-dev ✔ xml2 #> make ✔ fs, sass #> pandoc ✔ knitr, pkgdown, rmarkdown"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_list.html","id":null,"dir":"Reference","previous_headings":"","what":"List contents of the system requirements DB, for a platform — sysreqs_db_list","title":"List contents of the system requirements DB, for a platform — sysreqs_db_list","text":"also tries update system dependency database, outdated. (.e. older allowed metadata_update_after man_config_link(\"configuration option\").","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_list.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"List contents of the system requirements DB, for a platform — sysreqs_db_list","text":"","code":"sysreqs_db_list(sysreqs_platform = NULL)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_list.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"List contents of the system requirements DB, for a platform — sysreqs_db_list","text":"sysreqs_platform System requirements platform. NULL, sysreqs_platform man_config_link(\"configuration option\") used, defaults current platform. Set option .packageName detect platform correctly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_list.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"List contents of the system requirements DB, for a platform — sysreqs_db_list","text":"Data frame columns: name: cross platform system dependency name database. patterns: one regular expressions match SystemRequirements fields. packages: one system package names install. pre_install: command(s) run installing packages. post_install:: command(s) run installing packages.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_list.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"List contents of the system requirements DB, for a platform — sysreqs_db_list","text":"","code":"sysreqs_db_list(sysreqs_platform = \"ubuntu-22.04\") #> # A data frame: 116 × 5 #> name patterns packages pre_install post_install #> #> 1 QuantLib #> 2 apparmor #> 3 atk #> 4 automake #> 5 berkeleydb #> 6 blender #> 7 boost #> 8 bowtie2 #> 9 bwidget #> 10 cairo #> # ℹ 106 more rows"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_match.html","id":null,"dir":"Reference","previous_headings":"","what":"Match system requirement descriptions to the database — sysreqs_db_match","title":"Match system requirement descriptions to the database — sysreqs_db_match","text":"usual workflow pkgdepends matches SystemRequirements fields DESCRIPTION files database.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_match.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Match system requirement descriptions to the database — sysreqs_db_match","text":"","code":"sysreqs_db_match(specs, sysreqs_platform = NULL)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_match.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Match system requirement descriptions to the database — sysreqs_db_match","text":"specs Character vector system requirements descriptions. sysreqs_platform System requirements platform. NULL, sysreqs_platform man_config_link(\"configuration option\") used, defaults current platform. Set option .packageName detect platform correctly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_match.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Match system requirement descriptions to the database — sysreqs_db_match","text":"Data frame columns: spec: input specs. sysreq: name system library tool. packages: system packages, list column character vectors. Rarely can empty string, e.g. pre_install script performs installation. pre_install: list column character vectors. Shell script(s) run installation. post_install: list column character vectors. Shell script(s) run installation.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_match.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Match system requirement descriptions to the database — sysreqs_db_match","text":"sysreqs_db_match() function lets match string, mainly useful debugging.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_match.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Match system requirement descriptions to the database — sysreqs_db_match","text":"","code":"sysreqs_db_match( c(\"Needs libcurl\", \"Java, libssl\"), sysreqs_platform = \"ubuntu-22.04\" ) #> [[1]] #> # A data frame: 1 × 5 #> spec sysreq packages pre_install post_install #> #> 1 Needs libcurl libcurl #> #> [[2]] #> # A data frame: 1 × 5 #> spec sysreq packages pre_install post_install #> #> 1 Java, libssl java #>"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_update.html","id":null,"dir":"Reference","previous_headings":"","what":"Update the cached copy of the system requirements database — sysreqs_db_update","title":"Update the cached copy of the system requirements database — sysreqs_db_update","text":"Update cached copy system requirements database","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_update.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Update the cached copy of the system requirements database — sysreqs_db_update","text":"","code":"sysreqs_db_update()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_update.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Update the cached copy of the system requirements database — sysreqs_db_update","text":"cached copy recent, update attempted. See metadata_update_after man_config_link(\"configuration option\").","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_install_plan.html","id":null,"dir":"Reference","previous_headings":"","what":"Create an installation plan for system requirements — sysreqs_install_plan","title":"Create an installation plan for system requirements — sysreqs_install_plan","text":"function uses new_pkg_installation_proposal() methods create installation plan one packages, print system requirements.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_install_plan.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create an installation plan for system requirements — sysreqs_install_plan","text":"","code":"sysreqs_install_plan(refs, upgrade = TRUE, config = list())"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_install_plan.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create an installation plan for system requirements — sysreqs_install_plan","text":"refs Packages install. upgrade TRUE, pkgdepends choose latest available versions packages, instead preferring binary packages source packages. config Configuration options. See 'Configuration'. include library, temporary library used, equivalent assuming preinstalled packages. Pass sysreqs_platform want different platform one R running .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_install_plan.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create an installation plan for system requirements — sysreqs_install_plan","text":"List entries: os: character string. Operating system. distribution: character string. Linux distribution, NA OS Linux. version: character string. Distribution version, NA OS Linux. pre_install: character vector. Commands run installation system packages. install_scripts: character vector. Commands run install system packages. post_install: character vector. Commands run installation system packages. packages: data frame. Information system packages needed. columns: sysreq: string, cross-platform name system requirement. packages: list column character vectors. names R packages system requirement. pre_install: list column character vectors. Commands run package installation system requirement. system_packages: list column character vectors. Names system packages install. post_install: list column character vectors. Commands run package installation system requirement.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_install_plan.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create an installation plan for system requirements — sysreqs_install_plan","text":"","code":"sysreqs_install_plan( \"tidyverse\", config = list(sysreqs_platform = \"ubuntu-22.04\") ) #> $os #> [1] \"linux\" #> #> $distribution #> [1] \"ubuntu\" #> #> $version #> [1] \"22.04\" #> #> $pre_install #> [1] \"apt-get -y update\" #> #> $install_scripts #> [1] \"apt-get -y install libcurl4-openssl-dev libssl-dev make zlib1g-dev pandoc libfreetype6-dev libjpeg-dev libpng-dev libtiff-dev libicu-dev libfontconfig1-dev libfribidi-dev libharfbuzz-dev libxml2-dev\" #> #> $post_install #> character(0) #> #> $packages #> # A data frame: 14 × 5 #> sysreq packages pre_install system_packages post_install #> #> 1 fontconfig #> 2 freetype #> 3 fribidi #> 4 gnumake #> 5 harfbuzz #> 6 libcurl #> 7 libicu #> 8 libjpeg #> 9 libpng #> 10 libtiff #> 11 libxml2 #> 12 openssl #> 13 pandoc #> 14 zlib #>"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_is_supported.html","id":null,"dir":"Reference","previous_headings":"","what":"Check if a platform has system requirements support — sysreqs_is_supported","title":"Check if a platform has system requirements support — sysreqs_is_supported","text":"Check platform system requirements support","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_is_supported.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check if a platform has system requirements support — sysreqs_is_supported","text":"","code":"sysreqs_is_supported(sysreqs_platform = NULL)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_is_supported.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check if a platform has system requirements support — sysreqs_is_supported","text":"sysreqs_platform System requirements platform. NULL, sysreqs_platform man_config_link(\"configuration option\") used, defaults current platform. Set option .packageName detect platform correctly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_is_supported.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check if a platform has system requirements support — sysreqs_is_supported","text":"Logical scalar.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_is_supported.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check if a platform has system requirements support — sysreqs_is_supported","text":"","code":"sysreqs_is_supported() #> [1] TRUE"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_list_system_packages.html","id":null,"dir":"Reference","previous_headings":"","what":"List installed system packages — sysreqs_list_system_packages","title":"List installed system packages — sysreqs_list_system_packages","text":"List installed system packages","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_list_system_packages.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"List installed system packages — sysreqs_list_system_packages","text":"","code":"sysreqs_list_system_packages()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_list_system_packages.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"List installed system packages — sysreqs_list_system_packages","text":"Data frame columns: status. two three characters, notation dpkg Debian based systems. \"ii\" means package correctly installed. RPM based systems always \"ii\" currently. package: name system package. version: installed version system package. capabilities: list column character vectors, capabilities provided package.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_list_system_packages.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"List installed system packages — sysreqs_list_system_packages","text":"function uses sysreqs_platform configuration option, see man_config_link(\"Configuration\"). Set pkgdepends detect platform correctly.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_list_system_packages.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"List installed system packages — sysreqs_list_system_packages","text":"","code":"sysreqs_list_system_packages()[1:10,] #> # A data frame: 10 × 4 #> status package version provides #> * #> 1 ii acl 2.3.1-1 #> 2 ii adduser 3.118ubuntu5 #> 3 ii adoptium-ca-certificates 1.0.2-1 #> 4 ii adwaita-icon-theme 41.0-1ubuntu1 #> 5 ii alsa-topology-conf 1.2.5.1-2 #> 6 ii alsa-ucm-conf 1.2.6.3-1ubuntu1.11 #> 7 ii ant 1.10.12-1 #> 8 ii ant-optional 1.10.12-1 #> 9 ii apache2 2.4.52-1ubuntu4.9 #> 10 ii apache2-bin 2.4.52-1ubuntu4.9 "},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_platforms.html","id":null,"dir":"Reference","previous_headings":"","what":"List platforms with system requirements support — sysreqs_platforms","title":"List platforms with system requirements support — sysreqs_platforms","text":"List platforms system requirements support","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_platforms.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"List platforms with system requirements support — sysreqs_platforms","text":"","code":"sysreqs_platforms()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_platforms.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"List platforms with system requirements support — sysreqs_platforms","text":"Data frame columns: name: human readable OS name. os: OS name, e.g. linux. distribution: OS id, e.g. ubuntu redhat. version: distribution version. star means versions supported, also supported vendor. update_command: command run update system package metadata. install_command: command run install packages. query_command: name tool use query system package information.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_platforms.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"List platforms with system requirements support — sysreqs_platforms","text":"","code":"sysreqs_platforms() #> # A data frame: 10 × 7 #> name os distribution version update_command install_command #> #> 1 Ubuntu Linux linux ubuntu * apt-get -y up… apt-get -y ins… #> 2 Debian Linux linux debian * apt-get -y up… apt-get -y ins… #> 3 CentOS Linux linux centos * NA yum install -y #> 4 Rocky Linux linux rockylinux * NA dnf install -y #> 5 Red Hat Ente… linux redhat 6 NA yum install -y #> 6 Red Hat Ente… linux redhat 7 NA yum install -y #> 7 Red Hat Ente… linux redhat * NA dnf install -y #> 8 Fedora Linux linux fedora * NA dnf install -y #> 9 openSUSE Lin… linux opensuse * NA zypper --non-i… #> 10 SUSE Linux E… linux sle * NA zypper --non-i… #> # ℹ 1 more variable: query_command "},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-development-version","dir":"Changelog","previous_headings":"","what":"pkgdepends (development version)","title":"pkgdepends (development version)","text":"pkgdepends now supports gitlab:: package sources better, adding explicit syntax specify subdirectories (#353, @dgkf). gitlab:: git:: package sources now support git submodules git-submodules configuration option set TRUE. See ?\"pkgdepends-config\" (#354). new ?ignore-unavailable parameter makes easy ignore soft dependencies unavailable (https://github.com/r-lib/pak/issues/606). pkgdepends now automatically ignores soft dependencies incompatible OS type (OS_type entry DESCRIPTION) installing packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-072","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.7.2","title":"pkgdepends 0.7.2","text":"CRAN release: 2024-03-17 pkgdepends now supports * wildcard parameter specifications, parameters applied packages. E.g. *=?source means compiling packages source.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-071","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.7.1","title":"pkgdepends 0.7.1","text":"CRAN release: 2023-12-10 pkgdepends now import glue, rprojroot prettyunits packages. pkgdepends can now handle case Config/Needs/* dependencies requested package repository.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-070","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.7.0","title":"pkgdepends 0.7.0","text":"CRAN release: 2023-11-10 pkgdepends now correctly resolves latest GitHub release @*release notation (@pawelru, #321, #275). pkgdepends now correctly handles multiple instances package metadata, different R version requirements (https://github.com/r-lib/pak/issues/534, #331, https://github.com/r-lib/pak/issues/538). git:: package references work better now Azure DevOps (@jameslairdsmith, #333, #342). pkgdepends now better job accepting installed packages, avoids reinstalling packages needed using lock file (https://github.com/r-lib/actions/issues/759, #338).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-060","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.6.0","title":"pkgdepends 0.6.0","text":"CRAN release: 2023-07-18 Many system requirements improvements: sysreqs_check_installed(): check required system packages installed, sysreqs_fix_installed(): install missing system packages, sysreqs_db_list(): list system requirements database, sysreqs_db_match(): match SystemRrequirements field(s) database, sysreqs_db_update(): update system requirements database, sysreqs_install_plan(): look system requirements package dependencies, sysreqs_is_supported(): check pkgdepends supports system requirements platform, sysreqs_list_system_packages(): list installed system packages, sysreqs_platforms(): list supported platforms. New pkg_installation_proposal methods: get_sysreqs(), show_sysreqs() update_sysreqs(). output $show_solution() now includes system requirements. New sysreqs_platform configuration option. pkgdepends now looks system requirements asynchronously, dependency resolution. pkgdepends now reinstall system requirements default, already installed. (can force reinstall/upgrade sysreqs_update configuration option.) New gitlab:: package source install packages GitLab (#315). pkgdepends now correctly parses multiple git:: packages (#318). Fix @*release reference latest release. git:: package sources now support version 1 git protocol. E.g. Bioconductor git repositories now work: git::https://git.bioconductor.org/packages/limma (#314). platforms config parameter now works correctly deps:: package sources (https://github.com/r-lib/pak/issues/522). New include_linkingto config parameter always include LinkingTo packages solution, even binaries (#485). pkg_name_check() now include Acromine results, web site unstable.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-050","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.5.0","title":"pkgdepends 0.5.0","text":"CRAN release: 2023-04-19 pkgdepends now support git repositories package references. E.g. git::https://github.com/r-lib/pak.git. pkgdepends now supports versioned CRAN packages, e.g. dplyr@1.1.1 always install dplyr 1.1.1. Note CRAN packages supported, Bioconductor packages (yet). pkgdepends now alternative system requirements lookup implementation. supports Fedora Debian systems well, addition Debian, Ubuntu, SUSE RedHat derivatives. can switch implementation setting R_PKG_SYSREQS2 environment variable true. pkgdepends now better job looking dependencies hand-selected dependency types. E.g. dependencies = \"LinkingTo\". pkgdepends now removes ?ignore-d packages dependencies, uses correct version comparison ?ignore-.r (https://github.com/r-lib/actions/issues/708). pkgdepends now fail circular soft dependencies (#306). pkgdepends now reports dependency solver failures better cases (#305, https://github.com/r-lib/pak/issues/474). pkgdepends now uses locally built CRAN binaries cache.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-040","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.4.0","title":"pkgdepends 0.4.0","text":"CRAN release: 2022-12-17 pkgdepends much improved informative error messages now. work yet finished, find unclear error message, please open issue. Thank ! solver now robust non-canonical input (e.g. DESCRIPTION files) (https://github.com/r-lib/pak/issues/423). Better installation output. Standard output error now collected together (https://github.com/r-lib/pkgdepends/commit/0669f0f8c). solver now better job multiple versions package present repository (https://github.com/r-lib/actions/issues/559). pkg_name_check() now works , needed fix changes https://crandb.r-pkg.org. Explicit package names local URL package sources, package=local::... package=url::... now parsed correctly dependencies. pkgdepends now robust Archs fields missing CRAN metadata packages compiled code (https://github.com/r-lib/pak/issues/448). url:: packages now always work correctly, even digest package installed (https://github.com/r-lib/pak/issues/433). pkgdepends now robust installing packages subdirectories GitHub repositories (https://github.com/r-lib/pak/issues/431, @paleolimbot). Parameters ?reinstall, ?source ?ignore now work correctly specified package=?parameter format (#294).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-032","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.3.2","title":"pkgdepends 0.3.2","text":"CRAN release: 2022-09-08 ?ignore parameter works correctly now. dependency resolution now fail package found. pkgdepends can now install url:: remotes GitHub. pkgdepends now fail package .tar.gz GitHub snapshot subdirectory, subdirectory subdirectory. pkgdepends now errors early deduce name package Remotes Config/Needs/* entry. Solver failures now include details cases previously . pkgdepends can now update packages Docker containers old version installed different Docker later (https://github.com/r-lib/pak/issues/251) pkgdepends errors now user friendlier better formatted.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-031","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.3.1","title":"pkgdepends 0.3.1","text":"CRAN release: 2022-04-08 dependency solver now uses better heuristics (effectively) freeze multiple repositories multiple versions packages (e.g. RSPM CRAN) (#277).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-030","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.3.0","title":"pkgdepends 0.3.0","text":"CRAN release: 2022-02-16 New ?ignore--r parameter ignore optional dependencies need newer R version (#243). New ?ignore parameter ignore optional dependency. Allow specifying downstream package parameters package=?param syntax. $update() operation now works better :: refs, always install version planned . System requirement installation now robust works Unix shell expressions (#347). Make system dependency installation robust (https://github.com/r-lib/pak/issues/347). CRAN-like resolution robust now repository missing usual metadata. lock file pretty JSON now. pkgdepends now return tibbles, simple data frames. still printed concisely long pillar package loaded. pkgdepends now handles version requirement types properly: ‘<’, ‘<=’, ==, >=, >.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-020","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.2.0","title":"pkgdepends 0.2.0","text":"CRAN release: 2021-11-29 pkgdepends now Much better platform support, including arm64 packages macOS, single-arch multi-arch binary packages Windows. Better configuration via environment variables options, see ?\"pkgdepends-config\" details. Many improvements lock files, .e. $create_lockfile() method pkg_installation_proposal. System requirements support. currently active Linux, CI environment variable set true. can set PKG_SYSREQS environment variable true turn situations. See ?\"pkgdepends-config\". new :: reference type can used install package source. See ?pkg_refs .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-012","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.1.2","title":"pkgdepends 0.1.2","text":"CRAN release: 2021-06-30 remotes can now update packages installed pak. past sometimes work (#301).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-011","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.1.1","title":"pkgdepends 0.1.1","text":"CRAN release: 2021-05-16 pkg_name_check() works .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-010","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.1.0","title":"pkgdepends 0.1.0","text":"CRAN release: 2021-03-16 First CRAN release.","code":""}] +[{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement codeofconduct@posit.co. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired [Mozilla’s code conduct enforcement ladder][https://github.com/mozilla/inclusion]. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"MIT License","title":"MIT License","text":"Copyright (c) 2023 pkgdepends authors Permission hereby granted, free charge, person obtaining copy software associated documentation files (“Software”), deal Software without restriction, including without limitation rights use, copy, modify, merge, publish, distribute, sublicense, /sell copies Software, permit persons Software furnished , subject following conditions: copyright notice permission notice shall included copies substantial portions Software. SOFTWARE PROVIDED “”, WITHOUT WARRANTY KIND, EXPRESS IMPLIED, INCLUDING LIMITED WARRANTIES MERCHANTABILITY, FITNESS PARTICULAR PURPOSE NONINFRINGEMENT. EVENT SHALL AUTHORS COPYRIGHT HOLDERS LIABLE CLAIM, DAMAGES LIABILITY, WHETHER ACTION CONTRACT, TORT OTHERWISE, ARISING , CONNECTION SOFTWARE USE DEALINGS SOFTWARE.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/articles/pkgdepends-how-to.html","id":"how-to-list-all-dependencies-of-a-cranbioconductor-package","dir":"Articles","previous_headings":"Dependencies","what":"How to list all dependencies of a CRAN/Bioconductor package?","title":"pkgdepends HOWTO","text":"can also draw dependency tree:","code":"library(pkgdepends) prop <- new_pkg_deps(\"ggplot2\") prop$solve() prop$get_solution()$data #> ✔ Loading metadata database ... done #> # A data frame: 28 × 38 #> ref type direct directpkg status package version license needscompilation #> #> 1 cli stan… FALSE FALSE OK cli 3.6.2 MIT + … TRUE #> 2 color… stan… FALSE FALSE OK colors… 2.1-0 BSD_3_… TRUE #> 3 fansi stan… FALSE FALSE OK fansi 1.0.6 GPL-2 … TRUE #> 4 farver stan… FALSE FALSE OK farver 2.1.2 MIT + … TRUE #> 5 ggplo… stan… TRUE TRUE OK ggplot2 3.5.1 MIT + … FALSE #> 6 glue stan… FALSE FALSE OK glue 1.7.0 MIT + … TRUE #> 7 gtable stan… FALSE FALSE OK gtable 0.3.5 MIT + … FALSE #> 8 isoba… stan… FALSE FALSE OK isoband 0.2.7 MIT + … TRUE #> 9 label… stan… FALSE FALSE OK labeli… 0.4.3 MIT + … FALSE #> 10 lifec… stan… FALSE FALSE OK lifecy… 1.0.4 MIT + … FALSE #> # ℹ 18 more rows #> # ℹ 29 more variables: priority , md5sum , sha256 , #> # filesize , built , platform , rversion , #> # repotype , repodir , target , deps , mirror , #> # sources , remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , #> # cache_status , sysreqs_packages , sysreqs_pre_install , … #> # ℹ Use `print(n = ...)` to see more rows prop$draw() #> ggplot2 3.5.1 [new][bld][dl] (3.56 MB) #> ├─cli 3.6.2 [new][bld][cmp] #> ├─glue 1.7.0 [new][bld][cmp] #> ├─gtable 0.3.5 [new][bld][dl] (130.10 kB) #> │ ├─cli #> │ ├─glue #> │ ├─lifecycle 1.0.4 [new][bld][dl] (107.66 kB) #> │ │ ├─cli #> │ │ ├─glue #> │ │ └─rlang 1.1.3 [new][bld][cmp] #> │ └─rlang #> ├─isoband 0.2.7 [new][bld][cmp][dl] (1.59 MB) #> ├─lifecycle #> ├─MASS 7.3-60.2 #> ├─mgcv 1.9-1 #> │ ├─nlme 3.1-164 #> │ │ └─lattice 0.22-6 #> │ └─Matrix 1.7-0 #> │ └─lattice #> ├─rlang #> ├─scales 1.3.0 [new][bld][cmp][dl] (302.54 kB) #> │ ├─cli #> │ ├─farver 2.1.2 [new][bld][cmp][dl] (1.27 MB) #> │ ├─glue #> │ ├─labeling 0.4.3 [new][bld][dl] (10.17 kB) #> │ ├─lifecycle #> │ ├─munsell 0.5.1 [new][bld][dl] (182.31 kB) #> │ │ └─colorspace 2.1-0 [new][bld][cmp][dl] (2.12 MB) #> │ ├─R6 2.5.1 [new][bld] #> │ ├─RColorBrewer 1.1-3 [new][bld][dl] (11.64 kB) #> │ ├─rlang #> │ └─viridisLite 0.4.2 [new][bld][dl] (1.27 MB) #> ├─tibble 3.2.1 [new][bld][cmp][dl] (565.98 kB) #> │ ├─fansi 1.0.6 [new][bld][cmp][dl] (482.48 kB) #> │ ├─lifecycle #> │ ├─magrittr 2.0.3 [new][bld][cmp][dl] (267.07 kB) #> │ ├─pillar 1.9.0 [new][bld][dl] (444.53 kB) #> │ │ ├─cli #> │ │ ├─fansi #> │ │ ├─glue #> │ │ ├─lifecycle #> │ │ ├─rlang #> │ │ ├─utf8 1.2.4 [new][bld][cmp][dl] (241.08 kB) #> │ │ └─vctrs 0.6.5 [new][bld][cmp][dl] (969.07 kB) #> │ │ ├─cli #> │ │ ├─glue #> │ │ ├─lifecycle #> │ │ └─rlang #> │ ├─pkgconfig 2.0.3 [new][bld][dl] (6.08 kB) #> │ ├─rlang #> │ └─vctrs #> ├─vctrs #> └─withr 3.0.0 [new][bld] #> #> Key: [new] new | [dl] download | [bld] build | [cmp] compile"},{"path":"https://r-lib.github.io/pkgdepends/dev/articles/pkgdepends-how-to.html","id":"how-to-list-all-dependencies-of-a-github-package","dir":"Articles","previous_headings":"Dependencies","what":"How to list all dependencies of a GitHub package?","title":"pkgdepends HOWTO","text":"","code":"library(pkgdepends) prop <- new_pkg_deps(\"tidyverse/ggplot2\") prop$solve() prop$get_solution()$data #> # A data frame: 28 × 38 #> ref type direct directpkg status package version license needscompilation #> #> 1 tidyv… gith… TRUE TRUE OK ggplot2 3.5.1.… MIT + … TRUE #> 2 cli stan… FALSE FALSE OK cli 3.6.2 MIT + … TRUE #> 3 color… stan… FALSE FALSE OK colors… 2.1-0 BSD_3_… TRUE #> 4 fansi stan… FALSE FALSE OK fansi 1.0.6 GPL-2 … TRUE #> 5 farver stan… FALSE FALSE OK farver 2.1.2 MIT + … TRUE #> 6 glue stan… FALSE FALSE OK glue 1.7.0 MIT + … TRUE #> 7 gtable stan… FALSE FALSE OK gtable 0.3.5 MIT + … FALSE #> 8 isoba… stan… FALSE FALSE OK isoband 0.2.7 MIT + … TRUE #> 9 label… stan… FALSE FALSE OK labeli… 0.4.3 MIT + … FALSE #> 10 lifec… stan… FALSE FALSE OK lifecy… 1.0.4 MIT + … FALSE #> # ℹ 18 more rows #> # ℹ 29 more variables: priority , md5sum , sha256 , #> # filesize , built , platform , rversion , #> # repotype , repodir , target , deps , mirror , #> # sources , remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , #> # cache_status , sysreqs_packages , sysreqs_pre_install , … #> # ℹ Use `print(n = ...)` to see more rows"},{"path":"https://r-lib.github.io/pkgdepends/dev/articles/pkgdepends-how-to.html","id":"how-to-list-all-dependencies-of-a-local-package","dir":"Articles","previous_headings":"Dependencies","what":"How to list all dependencies of a local package?","title":"pkgdepends HOWTO","text":"","code":"library(pkgdepends) prop <- new_pkg_deps(\"local::.\") prop$solve() prop$get_solution()$data #> # A data frame: 14 × 38 #> ref type direct directpkg status package version license needscompilation #> #> 1 local… local TRUE TRUE OK pkgdep… 0.7.2.… MIT + … NA #> 2 callr stan… FALSE FALSE OK callr 3.7.6 MIT + … FALSE #> 3 cli stan… FALSE FALSE OK cli 3.6.2 MIT + … TRUE #> 4 curl stan… FALSE FALSE OK curl 5.2.1 MIT + … TRUE #> 5 desc stan… FALSE FALSE OK desc 1.4.3 MIT + … FALSE #> 6 filel… stan… FALSE FALSE OK filelo… 1.0.3 MIT + … TRUE #> 7 jsonl… stan… FALSE FALSE OK jsonli… 1.8.8 MIT + … TRUE #> 8 lpSol… stan… FALSE FALSE OK lpSolve 5.6.20 LGPL-2 TRUE #> 9 pkgbu… stan… FALSE FALSE OK pkgbui… 1.4.4 MIT + … FALSE #> 10 pkgca… stan… FALSE FALSE OK pkgcac… 2.2.2 MIT + … TRUE #> 11 proce… stan… FALSE FALSE OK proces… 3.8.4 MIT + … TRUE #> 12 ps stan… FALSE FALSE OK ps 1.7.6 MIT + … TRUE #> 13 R6 stan… FALSE FALSE OK R6 2.5.1 MIT + … FALSE #> 14 zip stan… FALSE FALSE OK zip 2.3.1 MIT + … TRUE #> # ℹ 29 more variables: priority , md5sum , sha256 , #> # filesize , built , platform , rversion , #> # repotype , repodir , target , deps , mirror , #> # sources , remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , #> # cache_status , sysreqs_packages , sysreqs_pre_install , #> # sysreqs_post_install , sysreqs_install , lib_status , …"},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/articles/pkgdepends-how-to.html","id":"how-to-download-a-package-and-all-of-its-dependencies","dir":"Articles","previous_headings":"Downloads","what":"How to download a package and all of its dependencies?","title":"pkgdepends HOWTO","text":"","code":"library(pkgdepends) target_dir <- tempfile() dir.create(target_dir) prop <- new_pkg_download_proposal(\"ggplot2\", config = list(cache_dir = target_dir)) prop$resolve() prop$download() prop$get_downloads() dir(target_dir) #> ℹ Getting 28 pkgs (24.98 MB), 5 (1.61 MB) cached #> ✔ Got fansi 1.0.6 (source) (482.48 kB) #> ✔ Got labeling 0.4.3 (source) (10.17 kB) #> ✔ Got lifecycle 1.0.4 (source) (107.66 kB) #> ✔ Got farver 2.1.2 (source) (1.28 MB) #> ✔ Got colorspace 2.1-0 (source) (2.12 MB) #> ✔ Got pkgconfig 2.0.3 (source) (6.08 kB) #> ✔ Got scales 1.3.0 (source) (302.54 kB) #> ✔ Got nlme 3.1-164 (source) (836.83 kB) #> ✔ Got gtable 0.3.5 (source) (130.23 kB) #> ✔ Got vctrs 0.6.5 (source) (969.07 kB) #> ✔ Got viridisLite 0.4.2 (source) (1.27 MB) #> ✔ Got mgcv 1.9-1 (source) (1.08 MB) #> ✔ Got pillar 1.9.0 (source) (444.53 kB) #> ✔ Got lattice 0.22-6 (source) (598.58 kB) #> ✔ Got mgcv 1.9-1 (source) (1.08 MB) #> ✔ Got MASS 7.3-60.2 (source) (511.86 kB) #> ✔ Got lattice 0.22-6 (source) (598.58 kB) #> ✔ Got magrittr 2.0.3 (source) (267.07 kB) #> ✔ Got munsell 0.5.1 (source) (182.31 kB) #> ✔ Got isoband 0.2.7 (source) (1.59 MB) #> ✔ Got utf8 1.2.4 (source) (241.08 kB) #> ✔ Got RColorBrewer 1.1-3 (source) (11.64 kB) #> ✔ Got nlme 3.1-164 (source) (836.83 kB) #> ✔ Got tibble 3.2.1 (source) (565.98 kB) #> ✔ Got MASS 7.3-60.2 (source) (511.86 kB) #> ✔ Got ggplot2 3.5.1 (source) (3.60 MB) #> ✔ Got Matrix 1.7-0 (source) (2.47 MB) #> ✔ Got Matrix 1.7-0 (source) (2.47 MB) #> # A data frame: 33 × 40 #> ref type direct directpkg status package version license needscompilation #> #> 1 cli stan… FALSE FALSE OK cli 3.6.2 MIT + … TRUE #> 2 color… stan… FALSE FALSE OK colors… 2.1-0 BSD_3_… TRUE #> 3 fansi stan… FALSE FALSE OK fansi 1.0.6 GPL-2 … TRUE #> 4 farver stan… FALSE FALSE OK farver 2.1.2 MIT + … TRUE #> 5 ggplo… stan… TRUE TRUE OK ggplot2 3.5.1 MIT + … FALSE #> 6 glue stan… FALSE FALSE OK glue 1.7.0 MIT + … TRUE #> 7 gtable stan… FALSE FALSE OK gtable 0.3.5 MIT + … FALSE #> 8 isoba… stan… FALSE FALSE OK isoband 0.2.7 MIT + … TRUE #> 9 label… stan… FALSE FALSE OK labeli… 0.4.3 MIT + … FALSE #> 10 latti… stan… FALSE FALSE OK lattice 0.22-6 GPL (>… TRUE #> # ℹ 23 more rows #> # ℹ 31 more variables: priority , md5sum , sha256 , #> # filesize , built , platform , rversion , #> # repotype , repodir , target , deps , mirror , #> # sources , remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , #> # cache_status , sysreqs_packages , sysreqs_pre_install , … #> # ℹ Use `print(n = ...)` to see more rows #> [1] \"src\""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/articles/pkgdepends-how-to.html","id":"how-to-install-a-package-into-a-new-library","dir":"Articles","previous_headings":"Installation","what":"How to install a package into a new library?","title":"pkgdepends HOWTO","text":"","code":"library(pkgdepends) dir.create(new_lib <- tempfile()) prop <- new_pkg_installation_proposal(\"pkgconfig\", config = list(library = new_lib)) prop$solve() prop$download() prop$install() lib_status(new_lib) #> ℹ No downloads are needed, 1 pkg (6.08 kB) is cached #> ℹ Building pkgconfig 2.0.3 #> ✔ Built pkgconfig 2.0.3 (870ms) #> ✔ Installed pkgconfig 2.0.3 (1s) #> ✔ Summary: 1 new in 1.9s #> # A data frame: 1 × 31 #> library package title version license imports suggests needscompilation #> #> 1 /tmp/Rtmpxh4M… pkgcon… Priv… 2.0.3 MIT + … utils covr, t… FALSE #> # ℹ 23 more variables: repository , built , remotetype , #> # remotepkgref , remoteref , remoterepos , #> # remotepkgplatform , remotesha , depends , linkingto , #> # enhances , md5sum , platform , priority , #> # biocviews , sysreqs , ref , type , status , #> # rversion , sources , repotype , deps "},{"path":"https://r-lib.github.io/pkgdepends/dev/articles/pkgdepends-how-to.html","id":"how-to-update-a-package","dir":"Articles","previous_headings":"Installation","what":"How to update a package?","title":"pkgdepends HOWTO","text":"Install older version first. Now update.","code":"library(pkgdepends) dir.create(new_lib <- tempfile()) config <- list(library = new_lib) prop <- new_pkg_installation_proposal(\"cran/pkgconfig@2.0.2\", config = config) prop$solve() prop$download() prop$install() lib_status(new_lib) #> ℹ No downloads are needed, 1 pkg is cached #> ✔ Got pkgconfig 2.0.2 (source) (13.22 kB) #> ℹ Packaging pkgconfig 2.0.2 #> ✔ Packaged pkgconfig 2.0.2 (464ms) #> ℹ Building pkgconfig 2.0.2 #> ✔ Built pkgconfig 2.0.2 (866ms) #> ✔ Installed pkgconfig 2.0.2 (github::cran/pkgconfig@d892880) (1s) #> ✔ Summary: 1 new in 1.9s #> # A data frame: 1 × 32 #> library package title version license imports suggests needscompilation #> #> 1 /tmp/Rtmpxh4M… pkgcon… Priv… 2.0.2 MIT + … utils covr, t… FALSE #> # ℹ 24 more variables: repository , built , remotetype , #> # remotehost , remoterepo , remoteusername , #> # remotepkgref , remoteref , remotesha , depends , #> # linkingto , enhances , md5sum , platform , #> # priority , biocviews , sysreqs , ref , type , #> # status , rversion , sources , repotype , deps library(pkgdepends) prop2 <- new_pkg_installation_proposal(\"pkgconfig\", config = config) prop2$set_solve_policy(\"upgrade\") prop2$solve() prop2$download() prop2$install() lib_status(new_lib) #> ℹ No downloads are needed, 1 pkg (6.08 kB) is cached #> ℹ Building pkgconfig 2.0.3 #> ✔ Built pkgconfig 2.0.3 (864ms) #> ✔ Installed pkgconfig 2.0.3 (1s) #> ✔ Summary: 1 updated in 1.9s #> # A data frame: 1 × 31 #> library package title version license imports suggests needscompilation #> #> 1 /tmp/Rtmpxh4M… pkgcon… Priv… 2.0.3 MIT + … utils covr, t… FALSE #> # ℹ 23 more variables: repository , built , remotetype , #> # remotepkgref , remoteref , remoterepos , #> # remotepkgplatform , remotesha , depends , linkingto , #> # enhances , md5sum , platform , priority , #> # biocviews , sysreqs , ref , type , status , #> # rversion , sources , repotype , deps "},{"path":"https://r-lib.github.io/pkgdepends/dev/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Gábor Csárdi. Author, maintainer. . Copyright holder, funder.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Csárdi G (2024). pkgdepends: Package Dependency Resolution Downloads. R package version 0.7.2.9000, https://github.com/r-lib/pkgdepends, https://r-lib.github.io/pkgdepends/.","code":"@Manual{, title = {pkgdepends: Package Dependency Resolution and Downloads}, author = {Gábor Csárdi}, year = {2024}, note = {R package version 0.7.2.9000, https://github.com/r-lib/pkgdepends}, url = {https://r-lib.github.io/pkgdepends/}, }"},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"pkgdepends","dir":"","previous_headings":"","what":"Package Dependency Resolution and Downloads","title":"Package Dependency Resolution and Downloads","text":"Package Dependency Resolution, Downloads Installation pkgdepends toolkit package dependencies, downloads installations, used packages. looking package manager, see pak.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"features","dir":"","previous_headings":"","what":"Features","title":"Package Dependency Resolution and Downloads","text":"Look package dependencies recursively. Visualize package dependencies. Download packages dependencies. Install downloaded packages. Includes dependency solver find consistent set dependencies. Supports CRAN Bioconductor packages automatically. Supports packages GitHub GitLab. Supports packages git repositories. Supports package bundles files web. Supports local package file trees. Supports Remotes entry DESCRIPTION file. Caches metadata downloaded packages via pkgcache Performs downloads HTTP queries concurrently. Builds installs packages parallel.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"install","dir":"","previous_headings":"","what":"Install","title":"Package Dependency Resolution and Downloads","text":"Install package : need development version, install ","code":"install.packages(\"pkgdepends\") pak::pak(\"r-lib/pkgdepends\")"},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"usage","dir":"","previous_headings":"","what":"Usage","title":"Package Dependency Resolution and Downloads","text":"","code":"library(pkgdepends)"},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"package-references","dir":"","previous_headings":"","what":"Package references","title":"Package Dependency Resolution and Downloads","text":"package reference (ref) specifies location R package can obtained . Examples: See “Package references” details.","code":"devtools cran::devtools bioc::Biobase r-lib/pkgdepends https://github.com/r-lib/pkgdepends local::~/works/shiny"},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"package-dependencies","dir":"","previous_headings":"","what":"Package dependencies","title":"Package Dependency Resolution and Downloads","text":"Dependencies development version cli package: See pkg_deps class details.","code":"pd <- new_pkg_deps(\"r-lib/pkgcache\") pd$solve() pd$draw() ## ✔ Updated metadata database: 2.92 MB in 8 files. ## ✔ Updating metadata database ... done ## r-lib/pkgcache 2.2.2.9000 [new][bld][cmp][dl] (unknown size) ## ├─callr 3.7.6 [new][bld][dl] (104.36 kB) ## │ ├─processx 3.8.4 [new][bld][cmp][dl] (163.98 kB) ## │ │ ├─ps 1.7.6 [new][bld][cmp][dl] (129.49 kB) ## │ │ └─R6 2.5.1 [new][bld][dl] (63.42 kB) ## │ └─R6 ## ├─cli 3.6.2 [new][bld][cmp][dl] (569.77 kB) ## ├─curl 5.2.1 [new][bld][cmp][dl] (716.70 kB) ## ├─filelock 1.0.3 [new][bld][cmp][dl] (15.44 kB) ## ├─jsonlite 1.8.8 [new][bld][cmp][dl] (1.05 MB) ## ├─processx ## └─R6 ## ## Key: [new] new | [dl] download | [bld] build | [cmp] compile"},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"package-downloads","dir":"","previous_headings":"","what":"Package downloads","title":"Package Dependency Resolution and Downloads","text":"Downloading dependencies package: See pkg_download_proposal class details.","code":"pdl <- new_pkg_download_proposal(\"r-lib/cli\") pdl$resolve() pdl$download() ## ℹ Getting 1 pkg with unknown size ## ✔ Got cli 3.6.2.9000 (source) (768.82 kB)"},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"package-installation","dir":"","previous_headings":"","what":"Package installation","title":"Package Dependency Resolution and Downloads","text":"Installing updating set package:","code":"lib <- tempfile() dir.create(lib) pdi <- new_pkg_installation_proposal( \"r-lib/cli\", config = list(library = lib) ) pdi$solve() pdi$download() pdi$install() ## ℹ Getting 1 pkg with unknown size ## ✔ Cached copy of cli 3.6.2.9000 (source) is the latest build ## ℹ Packaging cli 3.6.2.9000 ## ✔ Packaged cli 3.6.2.9000 (1.2s) ## ℹ Building cli 3.6.2.9000 ## ✔ Built cli 3.6.2.9000 (8.2s) ## ✔ Installed cli 3.6.2.9000 (github::r-lib/cli@71fd2a5) (31ms) ## ✔ Summary: 1 new in 8.2s"},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"dependency-resolution","dir":"","previous_headings":"","what":"Dependency resolution","title":"Package Dependency Resolution and Downloads","text":"pkg_deps, pkg_download_proposal pkg_installation_proposal resolve dependencies recursively, obtain information packages needed specified package references. See “Dependency resolution” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"the-dependency-solver","dir":"","previous_headings":"","what":"The dependency solver","title":"Package Dependency Resolution and Downloads","text":"dependency solver takes resolution information, works exact versions package must installed, version requirements satisfied. See “dependency solver” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"installation-plans","dir":"","previous_headings":"","what":"Installation plans","title":"Package Dependency Resolution and Downloads","text":"pkg_installation_proposal can create installation plans, also install . also possible import installation plans created tools. See “Installation plans” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"configuration","dir":"","previous_headings":"","what":"Configuration","title":"Package Dependency Resolution and Downloads","text":"details pkg_deps, pkg_download_proposal pkg_installation_proposal can tuned list configuration options. See “Configuration” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"related","dir":"","previous_headings":"","what":"Related","title":"Package Dependency Resolution and Downloads","text":"pak – R package manager pkgcache – Metadata package cache devtools – Tools R package developers","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Package Dependency Resolution and Downloads","text":"Please note pkgdepends project released Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/index.html","id":"license","dir":"","previous_headings":"","what":"License","title":"Package Dependency Resolution and Downloads","text":"MIT (c) RStudio","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/as_pkg_dependencies.html","id":null,"dir":"Reference","previous_headings":"","what":"Shorthands for dependency specifications — as_pkg_dependencies","title":"Shorthands for dependency specifications — as_pkg_dependencies","text":"Shorthands dependency specifications","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/as_pkg_dependencies.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Shorthands for dependency specifications — as_pkg_dependencies","text":"","code":"as_pkg_dependencies(deps)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/as_pkg_dependencies.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Shorthands for dependency specifications — as_pkg_dependencies","text":"deps See .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/as_pkg_dependencies.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Shorthands for dependency specifications — as_pkg_dependencies","text":"named list two character vectors: direct, indirect, dependency types use direct installations dependent packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/as_pkg_dependencies.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Shorthands for dependency specifications — as_pkg_dependencies","text":"R packages may various types dependencies, see Writing R Extensions. pkgdepends groups dependencies three groups: hard dependencies: \"Depends\", \"Imports\", \"LinkingTo\", soft dependencies: \"Suggests\" \"Enhances\", extra dependencies, see . pkgdepends supports concise ways specifying types dependencies package installed. similar utils::install.packages() interprets dependencies argument. typically use one values: NA \"hard\" install package required dependencies, TRUE install required dependencies, plus optional development dependencies. need flexibility, full description possible values deps argument : TRUE: means hard dependencies plus Suggests direct installations, hard dependencies dependent packages. FALSE: dependencies installed . NA (atomic type, NA_character_, etc. well): hard dependencies installed. See pkg_dep_types_hard(). list two entries named direct indirect, taken requested dependency types, direct installations dependent packages. character vector, taken dependency types direct installations, hard dependencies used dependent packages. \"hard\" included value list element, replaced hard dependency types. \"soft\" \"\" included, replaced hard soft dependency.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/as_pkg_dependencies.html","id":"extra-dependencies","dir":"Reference","previous_headings":"","what":"Extra dependencies","title":"Shorthands for dependency specifications — as_pkg_dependencies","text":"pkgdepends supports extra dependency types direct installations CRAN-like repositories. specified Config/Needs/ prefix DESCRIPTION can contain package references, separated commas. example can specify packages needed pkgdown website package: use dependency types, need specify deps argument pkgdepends functions. Note Config/Needs/* fields currently used CRAN packages, packages CRAN-like repositories general. Usually specify Config/Needs/* dependency type installed together \"hard\" \"\", install hard soft dependencies well.","code":"Config/Needs/website: r-lib/pkgdown"},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":null,"dir":"Reference","previous_headings":"","what":"Package configuration (internals) — config","title":"Package configuration (internals) — config","text":"Internal machinery pkgdepends configuration. See current_config() machinery can used define configuration package. standalone file can copied another package without changes.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"config"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Package configuration (internals) — config","text":"config list functions closure. can use two ways. one set configuration values package, include .onLoad(): _multiple _ sets configuration values (e.g. one per object), include function like package: call current_config() every time need create new set configuration values.","code":"conf <- config$new(\"prefix\") conf$add(\"myenrry\", \"string\", \"default-value\") ... conf$lock() current_config <- function() { conf <- config$new(\"prefix\") conf$add(\"myentry\", \"string\", \"default-value\") ... conf$lock() conf }"},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"config-entry-or-entry-","dir":"Reference","previous_headings":"","what":"Config entry (or entry)","title":"Package configuration (internals) — config","text":"single configurable entity. config entry name. name always standardized replacing dashes underscores. config entry type: string, flag, user defined type. can also default value. Examples: URL API, can string. Path directory use caching, either string, NULL (string_or_null type). Number processor cores use, positive integer (count type).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"configuration-or-config-","dir":"Reference","previous_headings":"","what":"Configuration (or config)","title":"Package configuration (internals) — config","text":"set configuration entries. config$new() returns configuration. configuration can extended adding new entries , locked.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"r-option-or-option-","dir":"Reference","previous_headings":"","what":"R option (or option)","title":"Package configuration (internals) — config","text":"option set base::options() queried base::getOption().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"configuration-prefix","dir":"Reference","previous_headings":"","what":"Configuration prefix","title":"Package configuration (internals) — config","text":"prefix typically package specific, used config entries package, avoid environment variable option name clashes packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"config-entry-type","dir":"Reference","previous_headings":"","what":"Config entry type","title":"Package configuration (internals) — config","text":"defines allowed values configuration entries, also string environment variable translated value entry. See list builtin types . can also define new types.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"string","dir":"Reference","previous_headings":"","what":"string","title":"Package configuration (internals) — config","text":"String scalar, NA allowed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"count","dir":"Reference","previous_headings":"","what":"count","title":"Package configuration (internals) — config","text":"Non-negative integer, NA allowed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"flag","dir":"Reference","previous_headings":"","what":"flag","title":"Package configuration (internals) — config","text":"Logical scalar, NA allowed. environment variables TRUE values : yes, true, 1 , FALSE values : , false, 0, . (case insensitive.)","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"string-or-null","dir":"Reference","previous_headings":"","what":"string_or_null","title":"Package configuration (internals) — config","text":"String NULL. NA allowed. environment variables string NULL means R NULL value.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"character","dir":"Reference","previous_headings":"","what":"character","title":"Package configuration (internals) — config","text":"Character vector without NA values. environment variables entries separated semicolon.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"custom","dir":"Reference","previous_headings":"","what":"custom","title":"Package configuration (internals) — config","text":"Custom type. env_decode function must specified config entry type, otherwise error throw corresponding environment variable set.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"config-onload-hook-pretty-printing-configuration","dir":"Reference","previous_headings":"","what":"config$onload_hook(): pretty-printing configuration","title":"Package configuration (internals) — config","text":"Call config$onload_hook() package's .onLoad() function want define S3 methods print package configuration nicer.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"config$onload_hook()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"config-new-create-a-new-configuration","dir":"Reference","previous_headings":"","what":"config$new(): Create a new configuration","title":"Package configuration (internals) — config","text":"Typically new() called outside functions package, config object created install time.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-1","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf <- config$new(prefix = utils::packageName(parent.frame()))"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"prefix: prefix config entry names. environment variables converted uppercase, dots converted underscores. default prefix name calling package. underscore separator used prefix entry name environment variable names. dot separator used R option names.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"new() returns config object, list containing configuration data functions (methods) query change .","code":"conf <- config$new()"},{"path":[]},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-2","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$add( name, type = conf$types, default = NULL, check = type[1], env_decode = type[1] )"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-1","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"name: name entry. type: type entry, string. default: default value config entry. function, called generate default, time config entry's value queried. check: function, called check value entry. function return TRUE successful FALSE unsuccessful checks. NULL, check performed. can also name type, default check type performed, . env_decode: function, used decode value entry environment variable, .e. string. can also name type, env_decode() function type used decoding.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-1","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"configuration, invisibly.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-3","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$get(name)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-2","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"name: name entry.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-2","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"Value entry. entry set via conf$set() conf$update(), value returned. Otherwise, entry set via R option (see base::getOption()), value returned. config prefix used get option name, dot separator. .e. entry called 'foo', prefix 'pkg', pkg.foo option used. entry check function, called returning. Otherwise, entry set via environment variable, value returned. config prefix used get name environment variable. addition, dots replaced underscores name converted uppercase. .e. entry called 'foo.bar', prefix 'pkg', 'PKG_FOO_BAR` environment variable used. Otherwise, entry default value, returned. default value might function, case function called produce default value. entry check function, called returning.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"conf-set-set-the-value-of-a-configuration-entry","dir":"Reference","previous_headings":"","what":"conf$set(): set the value of a configuration entry","title":"Package configuration (internals) — config","text":"$set() config entry, value used $set() returned $get(), without consulting R options environment variables.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-4","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$set(name, value)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-3","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"name: name entry. value: value entry. entry check function, called .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-3","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"configuration, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"-conf-unset-unset-a-configuration-entry","dir":"Reference","previous_headings":"","what":"$conf$unset(): unset a configuration entry","title":"Package configuration (internals) — config","text":"Note function unset R options environment variables. merely removes value assigned $set() $update().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-5","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$unset(name)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-4","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"name: name entry.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-4","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"configuration, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"cond-update-update-the-values-of-configuration-entries","dir":"Reference","previous_headings":"","what":"cond$update(): update the values of configuration entries","title":"Package configuration (internals) — config","text":"can use method set()/$unset()multiple config entries.NULLvalues innew` unset corresponding entry.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-6","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$update(new)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-5","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"new: named list, names config entry names values corresponding config entry values. NULL values unset config entry. list processed sequentially, duplicates latest values effect. (every value checked check function, .)","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-5","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"configuration, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"conf-list-query-the-names-of-all-config-entries","dir":"Reference","previous_headings":"","what":"conf$list(): query the names of all config entries","title":"Package configuration (internals) — config","text":"Note order non-deterministic currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-7","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$list()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-6","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"Character vector.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-8","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$exists(name)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-6","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"name: name entry.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-7","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"Logical scalar, TRUE entry exists configuration, FALSE otherwise. Note TRUE mean value entry set.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"conf-lock-lock-the-configuration","dir":"Reference","previous_headings":"","what":"conf$lock(): lock the configuration","title":"Package configuration (internals) — config","text":"configuration locked, entries can added .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-9","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$lock()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-8","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"configuration, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"conf-fix-fix-the-value-of-a-single-configuration-entry","dir":"Reference","previous_headings":"","what":"conf$fix(): fix the value of a single configuration entry","title":"Package configuration (internals) — config","text":"currently $set() value fixed changed . can fix entry without setting value, case R options environment variables can still used update .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-10","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$unset(name)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-7","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"name: name entry.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-9","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"configuration, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"conf-add-type-add-a-new-config-entry-type-to-a-configuration","dir":"Reference","previous_headings":"","what":"conf$add_type(): add a new config entry type to a configuration","title":"Package configuration (internals) — config","text":"new type can used conf$add() calls.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"usage-11","dir":"Reference","previous_headings":"","what":"Usage","title":"Package configuration (internals) — config","text":"","code":"conf$add_type(type_name, check, env_decode)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"arguments-8","dir":"Reference","previous_headings":"","what":"Arguments","title":"Package configuration (internals) — config","text":"type_name: type name. check: default check function type. Use NULL checks. env_decode: function use decode value type environment variable (.e. string).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/config.html","id":"value-10","dir":"Reference","previous_headings":"","what":"Value","title":"Package configuration (internals) — config","text":"configuration, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/default_platforms.html","id":null,"dir":"Reference","previous_headings":"","what":"R platforms — current_r_platform","title":"R platforms — current_r_platform","text":"default_platfoms() returns default platforms current R session. typically consist detected platform current R session, \"source\", source packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/default_platforms.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R platforms — current_r_platform","text":"","code":"current_r_platform() default_platforms()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/default_platforms.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"R platforms — current_r_platform","text":"current_r_platform() returns string, name current platform. default_platforms() returns character vector platform names.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/default_platforms.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"R platforms — current_r_platform","text":"current_r_platform() detects platform current R version. default pkgdepends works source packages binary packages current platform. can change , see 'Configuration'. following platform names can configured returned current_r_platform() default_platforms(): \"source\" source packages, platform string like R.version$platform, Linux name version distribution also included. Examples: x86_64-apple-darwin17.0: macOS High Sierra. aarch64-apple-darwin20: macOS Big Sur arm64. x86_64-w64-mingw32: 64 bit Windows. i386-w64-mingw32: 32 bit Windows. i386+x86_64-w64-mingw32: 64 bit + 32 bit Windows. i386-pc-solaris2.10: 32 bit Solaris. (broken 64 Solaris builds might platform string, unfortunately.) x86_64-pc-linux-gnu-debian-10: Debian Linux 10 x86_64. x86_64-pc-linux-musl-alpine-3.14.1: Alpine Linux. x86_64-pc-linux-gnu-unknown: Unknown Linux Distribution x86_64. s390x-ibm-linux-gnu-ubuntu-20.04: Ubuntu Linux 20.04 S390x. amd64-portbld-freebsd12.1: FreeBSD 12.1 x86_64. addition, following platform names can used configure pkgdepends: \"macos\" macOS binaries appropriate R versions pkgdepends working (defaulting version current session), defined CRAN binaries. E.g. R 3.5.0 macOS binaries built macOS El Capitan. \"windows\" Windows binaries default CRAN architecture. currently Windows Vista supported R versions, might change future. actual binary packages repository might support 32 bit 64 builds, one . practice 32-bit packages rare. CRAN builds including R 4.1 architectures, R 4.2 64 bit . \"windows\" alias i386+x86_64-w64-mingw32 currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/default_platforms.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"R platforms — current_r_platform","text":"","code":"current_r_platform() #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" default_platforms() #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" \"source\""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git-protocol.html","id":null,"dir":"Reference","previous_headings":"","what":"git protocol notes, for developers — git-protocol","title":"git protocol notes, for developers — git-protocol","text":"Assumptions, might relaxed checked later: server must speak smart protocol, version 1 2. (Although added functions specifically dumb protocol, pretty limited.) use HTTP transport, SSH. server shallow capability. server filter capability protocol version 2. SHA-1 hashing supported.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git-protocol.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"git protocol notes, for developers — git-protocol","text":"Improvements needed: DONE Tests. (Can always .) DONE Use async HTTP. DONE Support packfiles deltas. (ofs-delta objects still supported.) DONE Optionally send authorization. Already possibly URL. DONE Better error messages. Better errors non-existing user, repository, ref, PR, etc. Optional improvements: Support ofs-delta objects packfiles. necessarily, unless send capability, server sending ofs-delta objects. Make unpacking faster. fast currently, bit arithmetic R. already faster tar.gz + uncompress download GitHub, really needed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git-protocol.html","id":"docs-and-other-helpful-links-","dir":"Reference","previous_headings":"","what":"Docs and other helpful links:","title":"git protocol notes, for developers — git-protocol","text":"https://github.com/git/git/blob/master/Documentation/gitprotocol-common.txt https://github.com/git/git/blob/master/Documentation/gitprotocol-pack.txt https://github.com/git/git/blob/master/Documentation/gitprotocol-v2.txt https://github.com/calebsander/git-internals/blob/part2/src/main.rs https://dev./calebsander/git-internals-part-1--git-object-model-474m","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_download_file.html","id":null,"dir":"Reference","previous_headings":"","what":"Download a blob for a remote git repository — git_download_file","title":"Download a blob for a remote git repository — git_download_file","text":"Download blob remote git repository","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_download_file.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Download a blob for a remote git repository — git_download_file","text":"","code":"git_download_file(url, sha, output = sha)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_download_file.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Download a blob for a remote git repository — git_download_file","text":"url Repository URL, e.g. https://github.com/r-lib/pak.git. might include authentication information, e.g. GitHub token. sha SHA hash blob. output Path blob written. directory created exist.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_download_file.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Download a blob for a remote git repository — git_download_file","text":"list corresponds git packfile entry, invisibly. entries: type (always \"blob\"), object (raw object, blob ), size, packed_size, hash.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_download_file.html","id":"examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Download a blob for a remote git repository — git_download_file","text":"Download DESCRIPTION file GitHub:","code":"pak_repo <- \"https://github.com/r-lib/pak.git\" fls <- git_list_files(pak_repo, \"HEAD\") git_download_file( pak_repo, fls$files$hash[fls$files$path == \"DESCRIPTION\"], output = tmp <- tempfile() ) readLines(tmp)[1:5] #> [1] \"Package: pak\" #> [2] \"Version: 0.3.1.9999\" #> [3] \"Title: Another Approach to Package Installation\" #> [4] \"Description: The goal of 'pak' is to make package installation faster and\" #> [5] \" more reliable. In particular, it performs all HTTP operations in parallel,\""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_fetch.html","id":null,"dir":"Reference","previous_headings":"","what":"Get a packfile for an object from a remote git repository — git_fetch","title":"Get a packfile for an object from a remote git repository — git_fetch","text":"Get packfile object remote git repository","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_fetch.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get a packfile for an object from a remote git repository — git_fetch","text":"","code":"git_fetch(url, sha, blobs = FALSE)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_fetch.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get a packfile for an object from a remote git repository — git_fetch","text":"url Repository URL, e.g. https://github.com/r-lib/pak.git. might include authentication information, e.g. GitHub token. sha SHA object get. blobs Whether want download blobs well . still always requesting shallow (depth = 1) clone.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_fetch.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get a packfile for an object from a remote git repository — git_fetch","text":"list git objects. element entries: type: commit, tree, blob tag. object: object . character scalar commits, data frame trees, columns: type, mode, path, hash, raw vector blobs, raw vector tags. (probably better .)","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_fetch.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Get a packfile for an object from a remote git repository — git_fetch","text":"uses filter blob:none, extra blobs downloaded, trees.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_fetch.html","id":"examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get a packfile for an object from a remote git repository — git_fetch","text":"","code":"ft <- git_fetch( \"https://github.com/r-lib/filelock.git\", \"9fdba75a62facaa3e818902f58891166e45eabe9\" ) ft #> [[1]] #> [[1]]$type #> [1] \"commit\" #> #> [[1]]$object #> [1] \"tree f92fab4f8594bd2e6c10f6f3e5dd44e556d7bb7e\\nparent 7c5389719fa50e1827195771ac07c01d44ababa1\\nauthor Gábor Csárdi 1538733728 +0100\\ncommitter Gábor Csárdi 1538733728 +0100\\n\\nFix spelling\\n\" #> #> [[1]]$size #> [1] 239 #> #> 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files in a remote git repository — git_list_files","text":"","code":"git_list_files(url, ref = \"HEAD\")"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_files.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"List files in a remote git repository — git_list_files","text":"url Repository URL, e.g. https://github.com/r-lib/pak.git. might include authentication information, e.g. GitHub token. ref Either SHA ref name. may also branch name without refs/heads prefix, partial (unique) SHA least seven hexadecimal digits. See git_list_refs() branches, tags GitHub pull requests named.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_files.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"List files in a remote git repository — git_list_files","text":"list entries: ref: ref function called . sha: SHA ref. commit: named character vector data commit object belonging ref. fields named: tree, parent, author, committer, encoding, message. tree: SHA tree object belonging commit. files: data frame files directories. columns: hash: SHA hash tree blob. type: Either \"tree\" \"blob\". mode: Unix mode. path: Relative path repository's root directory.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_files.html","id":"examples","dir":"Reference","previous_headings":"","what":"Examples","title":"List files in a remote git repository — git_list_files","text":"","code":"fls <- git_list_files(\"https://github.com/r-lib/pak.git\", 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15 Makefile #> 16 NAMESPACE #> 17 NEWS.md #> 18 R #> 19 R/aaa-rstudio-detect.R #> 20 R/build-pak-binary.R #> 21 R/cache.R #> 22 R/compat-vctrs.R #> 23 R/confirmation.R #> 24 R/cran-install-order.R #> 25 R/default-cran-mirror.R #> 26 R/deps-explain.R #> 27 R/dev-mode.R #> 28 R/docs.R #> 29 R/embed-ca-certs.R #> 30 R/embed-lib.R #> 31 R/errors.R #> 32 R/extra.R #> 33 R/formatted.R #> 34 R/global-handler.R #> 35 R/json.R #> 36 R/library.R #> 37 R/local.R #> 38 R/lockfile.R #> 39 R/name-check.R #> 40 R/onload.R #> 41 R/package.R #> 42 R/pak-cleanup.R #> 43 R/pak-install.R #> 44 R/pak-update.R #> 45 R/pak.R #> 46 R/print.R #> 47 R/private-lib.R #> 48 R/push-packages.R #> 49 R/repo.R #> 50 R/rstudio-detect.R #> 51 R/safe-cran-install.R #> 52 R/search.R #> 53 R/subprocess.R #> 54 R/system-requirements.R #> 55 R/terminate.R #> 56 R/unload.R #> 57 R/utils.R #> 58 R/warn-loaded.R #> 59 README.Rmd #> 60 README.md #> 61 _pkgdown.yml #> 62 cleanup #> 63 codecov.yml #> 64 configure #> 65 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142 tests #> 143 tests/testthat.R #> 144 tests/testthat #> 145 tests/testthat/_snaps #> 146 tests/testthat/_snaps/print.md #> 147 tests/testthat/helpers.R #> 148 tests/testthat/setup.R #> 149 tests/testthat/test-bundle.R #> 150 tests/testthat/test-create-pak-repo.R #> 151 tests/testthat/test-platform.R #> 152 tests/testthat/test-print.R #> 153 tests/testthat/test-private-lib.R #> 154 tests/testthat/test-repo.R #> 155 tests/testthat/test-subprocess.R #> 156 tests/testthat/test-system-requirements.R #> 157 tests/testthat/test-ui.R #> 158 tests/testthat/test-utils.R #> 159 tools #> 160 tools/build #> 161 tools/build/linux #> 162 tools/build/linux/Dockerfile #> 163 tools/build/linux/Dockerfile-builder #> 164 tools/build/linux/Makefile #> 165 tools/build/linux/Makevars-builder #> 166 tools/build/macos #> 167 tools/build/macos/.gitignore #> 168 tools/build/macos/Makefile #> 169 tools/build/macos/Makevars-curl.in #> 170 tools/build/macos/download.sh #> 171 tools/build/windows #> 172 tools/build/windows/.gitignore #> 173 tools/build/windows/Makefile #> 174 tools/dynamic-help.R #> 175 vignettes #> 176 vignettes/internals.Rmd"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_refs.html","id":null,"dir":"Reference","previous_headings":"","what":"List references in a remote git repository — git_list_refs","title":"List references in a remote git repository — git_list_refs","text":"List references remote git repository","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_refs.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"List references in a remote git repository — git_list_refs","text":"","code":"git_list_refs(url, prefixes = NULL)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_refs.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"List references in a remote git repository — git_list_refs","text":"url Repository URL, e.g. https://github.com/r-lib/pak.git. might include authentication information, e.g. GitHub token. prefixes NULL, references one prefixes prefix, listed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_refs.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"List references in a remote git repository — git_list_refs","text":"list entries: refs caps. caps character vector capabilities advertised server. refs data frame git refs, columns ref hash.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_refs.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"List references in a remote git repository — git_list_refs","text":"Branches references named refs/heads/, e.g. refs/heads/main. Tags references named refs/tags/, e.g. refs/tags/v1.0.2. GitHub pull requests references named refs/pull//head, e.g. refs/pull/37/head. open pull requests refs/pull//merge reference well, branch pull request merged. special reference called HEAD. points default branch GitHub.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/git_list_refs.html","id":"examples","dir":"Reference","previous_headings":"","what":"Examples","title":"List references in a remote git repository — git_list_refs","text":"List references certain prefix: Various services:","code":"git_list_refs(\"https://github.com/r-lib/filelock.git\") #> $refs #> ref #> 1 HEAD #> 2 refs/heads/cran-1-0-2 #> 3 refs/heads/fix/testthat-error-parallel #> 4 refs/heads/gh-pages #> 5 refs/heads/main #> 6 refs/heads/refcounting #> 7 refs/pull/14/head #> 8 refs/pull/37/head #> 9 refs/pull/37/merge #> 10 refs/pull/38/head #> 11 refs/pull/40/head #> 12 refs/tags/v1.0.2 #> hash #> 1 0331c49c0b17845468b5f3e2da75680475bc9989 #> 2 dfc615b14dfc030df3f44bd377e752728f76df3d #> 3 6f4b4bfcc1d3442d63496c7640984c0d9570a05a #> 4 2956fbdcbab65b75e3347048a9dc18b15fe377d2 #> 5 0331c49c0b17845468b5f3e2da75680475bc9989 #> 6 48e5bbe0e031897c7f0e194edbf6897f813fbaee #> 7 48e5bbe0e031897c7f0e194edbf6897f813fbaee #> 8 6f4b4bfcc1d3442d63496c7640984c0d9570a05a #> 9 74b253543f6d2e7213a8174ebbe8e397b9cc866b #> 10 c7e58188a55844e6e75cd38cf81388c3452b1259 #> 11 10421f0b7117244002d377d7a9699c2742abdfcc #> 12 9fdba75a62facaa3e818902f58891166e45eabe9 #> #> $caps #> [1] \"multi_ack\" \"thin-pack\" #> [3] \"side-band\" \"side-band-64k\" #> [5] \"ofs-delta\" \"shallow\" #> [7] \"deepen-since\" \"deepen-not\" #> [9] \"deepen-relative\" \"no-progress\" #> [11] \"include-tag\" \"multi_ack_detailed\" #> [13] \"allow-tip-sha1-in-want\" \"allow-reachable-sha1-in-want\" #> [15] \"no-done\" \"symref=HEAD:refs/heads/main\" #> [17] \"filter\" \"object-format=sha1\" #> [19] \"agent=git/github-g8119c27a9d8d\" git_list_refs(\"https://github.com/r-lib/filelock.git\", \"refs/heads/main\") #> $refs #> ref hash #> 1 refs/heads/main 211dde89c4974b295aa02c5c77b5570ead0fc458 #> #> $caps #> [1] \"version 2\" \"agent=git/github-1c5ee477c782\" #> [3] \"ls-refs=unborn\" \"fetch=shallow wait-for-done filter\" #> [5] \"server-option\" \"object-format=sha1\" git_list_refs(\"https://gitlab.com/Linaro/tuxmake.git\", \"HEAD\") #> $refs #> ref hash #> 1 HEAD 9441c1f6ae68148882e9d15ab2d6b3008f4c2c19 #> #> $caps #> [1] \"version 2\" \"agent=git/2.40.0.gl1\" #> [3] \"ls-refs=unborn\" \"fetch=shallow wait-for-done filter\" #> [5] \"server-option\" \"object-format=sha1\" #> [7] \"object-info\" git_list_refs(\"https://bitbucket.org/gaborcsardi/cli.git\") #> $refs #> ref #> 1 HEAD #> 2 refs/heads/ask #> 3 refs/heads/cran-3.0.0 #> 4 refs/heads/cran/v3.0.1 #> 5 refs/heads/feature/cli-capabilities #> 6 refs/heads/feature/cli-condition-width #> 7 refs/heads/feature/format-error-options #> 8 refs/heads/feature/rstudio-job #> 9 refs/heads/feature/span-bullets #> 10 refs/heads/feature/table #> 11 refs/heads/fix/pkgdown-2.0.0 #> 12 refs/heads/gh-pages #> 13 refs/heads/main #> 14 refs/heads/use-glue-literal-argument #> 15 refs/tags/v1.0.1 #> 16 refs/tags/v1.1.0 #> 17 refs/tags/v1.1.0-pre #> 18 refs/tags/v2.0.0 #> 19 refs/tags/v2.0.1 #> 20 refs/tags/v2.0.2 #> 21 refs/tags/v2.1.0 #> 22 refs/tags/v2.2.0 #> 23 refs/tags/v2.3.0 #> 24 refs/tags/v2.3.1 #> 25 refs/tags/v2.4.0 #> 26 refs/tags/v2.5.0 #> 27 refs/tags/v3.0.0 #> 28 refs/tags/v3.0.1 #> 29 refs/tags/v3.1.0 #> hash #> 1 928ff3e6a52a08bbabadc57027c43de13b0d7601 #> 2 736e5824c082e94fc1acc68fb604fa66b19d1826 #> 3 75f3f185c116ff69f3abd56bf89fa9032a9eb965 #> 4 722cd638ebe4529db20442962cd2d7dc56c694d7 #> 5 b6ebff6771ff9ee8e5b19f8b6c20e142182ab866 #> 6 ee931427a9ee51bdfd837bd03c22d2d60ad81946 #> 7 28d4efb9b8875e933d682285b65ab05c61f6aef2 #> 8 8ddc6e68b970f14d45af6109108b17352dc8a4e7 #> 9 bfaabf3658c229d406591b4436991e37720476cf #> 10 0d4089fc2f6cf8c7364f02698cf257363e877660 #> 11 be878b57b6f9978953916b0a1d7272f104e27309 #> 12 928ff3e6a52a08bbabadc57027c43de13b0d7601 #> 13 f6794c4a2d845b6706a41c58f63b4acbbc663968 #> 14 5c2904c05e8f809d0136e2253e2e6ea4b7743992 #> 15 6e0ffb0de1b54953583e01068a8052ae4cbe72aa #> 16 d4f0e8618aba3475974394075f3f5384695d1d28 #> 17 57fb26d1c4582fc73a3a8531aa534948f88e96bc #> 18 9a133422f200f7aa0cdc78b28eb42770cdfe4b35 #> 19 31aaccbdb3904c5b681175483a95688940345725 #> 20 19f3b864f4ee04c31627a3246dbea44bc07b7967 #> 21 a914e326aea8a9ec7d07f7accd64bb624065ba8a #> 22 e0d0668030b482c1bda1fce66db63f402c4e9c5a #> 23 e4c9180c5b53f68c3f938473c0d5871ceefe9991 #> 24 5c0c8a88549050e156ea4469adf536e1c0ac0881 #> 25 251c84f298b46e0529dd992b9ec86da4aaaf4fa8 #> 26 17fd0dc202a51aa82a7704786712d9f77c690c4d #> 27 df963095361d77322676260e60c549d8807ded1d #> 28 525e785e8b34e889707bbbe354287bd4a60e8fcb #> 29 e40cfd4eedad58c22c3e7bcfdba6f23f11a79e13 #> #> $caps #> [1] \"multi_ack\" \"thin-pack\" #> [3] \"side-band\" \"side-band-64k\" #> [5] \"ofs-delta\" \"shallow\" #> [7] \"deepen-since\" \"deepen-not\" #> [9] \"deepen-relative\" \"no-progress\" #> [11] \"include-tag\" \"multi_ack_detailed\" #> [13] \"allow-tip-sha1-in-want\" \"allow-reachable-sha1-in-want\" #> [15] \"no-done\" \"symref=HEAD:refs/heads/gh-pages\" #> [17] \"object-format=sha1\" \"agent=git/2.32.0\" git_list_refs(\"https://git.savannah.nongnu.org/git/administration/savane.git\") #> $refs #> ref hash #> 1 HEAD bdfce5e39c3ebb36b748925dfc8a0cde483fda6a #> 2 refs/heads/i18n e5f2c309b038789a82ab5a54d723a3564f1bde58 #> 3 refs/heads/master bdfce5e39c3ebb36b748925dfc8a0cde483fda6a #> 4 refs/tags/release-3.10 e1db1a011effeb7d16a5af9c15b91d8998579ad7 #> 5 refs/tags/release-3.10^{} d16b7e7e849d5d63794b1c48847e8a57250ce2bd #> 6 refs/tags/release-3.11 7d5723e022a7144c077501ecff5ac23984effe8d #> 7 refs/tags/release-3.11^{} af29b8a99fe4b4e7deefb6bcbf9a6d98f43228bf #> #> $caps #> [1] \"multi_ack\" \"thin-pack\" #> [3] \"side-band\" \"side-band-64k\" #> [5] \"ofs-delta\" \"shallow\" #> [7] \"deepen-since\" \"deepen-not\" #> [9] \"deepen-relative\" \"no-progress\" #> [11] \"include-tag\" \"multi_ack_detailed\" #> [13] \"no-done\" \"symref=HEAD:refs/heads/master\" #> [15] \"agent=git/2.17.1\""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/install_package_plan.html","id":null,"dir":"Reference","previous_headings":"","what":"Perform a package installation plan — install_package_plan","title":"Perform a package installation plan — install_package_plan","text":"See 'Installation plans' details format.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/install_package_plan.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Perform a package installation plan — install_package_plan","text":"","code":"install_package_plan( plan, lib = .libPaths()[[1]], num_workers = 1, cache = NULL )"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/install_package_plan.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Perform a package installation plan — install_package_plan","text":"plan Package plan object, data frame, see 'Installation plans' format. lib Library directory install . num_workers Number worker processes use. cache Package cache use, NULL.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/install_package_plan.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Perform a package installation plan — install_package_plan","text":"Information installation process.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/install_plans.html","id":null,"dir":"Reference","previous_headings":"","what":"Installation plans — install_plans","title":"Installation plans — install_plans","text":"installation plan contains data needed install set package files. usually created installation proposal solving dependencies downloading package files.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/install_plans.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Installation plans — install_plans","text":"also possible create installation plan different way. installation plan object must data frame, least following columns: package: name package. type: type package reference. binary: Whether package binary package. file: Full path package file directory. dependencies: list column lists names dependent packages package. needscompilation: Whether package needs compilation. FALSE binary packages. installation plans created via pkg_installation_proposal, plan contains columns pkg_download_result objects, additional ones: library: library package supposed installed . direct: whether package directly requested installed dependency. vignettes: whether vignettes need (re)built. packaged: whether R CMD build already called package.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/install_plans.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Installation plans — install_plans","text":"","code":"if (FALSE) { pdi <- new_pkg_installation_proposal( \"pak\", config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$download() pdi$get_install_plan() }"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/is_valid_package_name.html","id":null,"dir":"Reference","previous_headings":"","what":"Check whether a package name is valid — is_valid_package_name","title":"Check whether a package name is valid — is_valid_package_name","text":"Check whether package name valid","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/is_valid_package_name.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check whether a package name is valid — is_valid_package_name","text":"","code":"is_valid_package_name(nm)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/is_valid_package_name.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check whether a package name is valid — is_valid_package_name","text":"nm Potential package name, string length 1.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/is_valid_package_name.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check whether a package name is valid — is_valid_package_name","text":"Logical flag. FALSE, reason attribute contains character string, explanation package name invalid. See examples .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/is_valid_package_name.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check whether a package name is valid — is_valid_package_name","text":"","code":"is_valid_package_name(\"pak\") #> [1] TRUE is_valid_package_name(\"pkg\") #> [1] FALSE #> attr(,\"reason\") #> [1] \"Package name forbidden by CRAN.\" is_valid_package_name(\"pak\\u00e1ge\") #> [1] FALSE #> attr(,\"reason\") #> [1] \"It can only contain ASCII characters.\" is_valid_package_name(\"good-package\") #> [1] FALSE #> attr(,\"reason\") #> [1] \"It can only contain letters, numbers and dot.\" is_valid_package_name(\"x\") #> [1] FALSE #> attr(,\"reason\") #> [1] \"It must have at least two characters.\" is_valid_package_name(\"1stpackage\") #> [1] FALSE #> attr(,\"reason\") #> [1] \"It must start with a letter.\" is_valid_package_name(\"dots.\") #> [1] FALSE #> attr(,\"reason\") #> [1] \"It must not end with a dot.\""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/lib_status.html","id":null,"dir":"Reference","previous_headings":"","what":"Status of packages in a library — lib_status","title":"Status of packages in a library — lib_status","text":"Query data packages package library.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/lib_status.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Status of packages in a library — lib_status","text":"","code":"lib_status(library = .libPaths()[1], packages = NULL)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/lib_status.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Status of packages in a library — lib_status","text":"library Path library. packages NULL, packages shown.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/lib_status.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Status of packages in a library — lib_status","text":"Data frame contains data packages installed library. always columns: biocviews: corresponding field DESCRIPTION, must present Bioconductor packages, packages typically . built: Built field DESCRIPTION. depends, suggests, Imports, linkingto, enhances: corresponding fields DESCRIPTION files. deps: list data frames, dependencies package. columns: ref, type (dependency type lowercase), package (dependent package, R), op version, last two version requirement. op can >=, >, == <=, although first one common practice. library: path package library containing package. license: DESCRIPTION. md5sum: DESCTIPTION, typically NA, except Windows. needscompilation: DESCRIPTION, column logical. package: package name. platform: Built field DESCRIPTION, current platform missing DESCRIPTION. priority: DESCRIPTION, usually base, recommended, missing. ref: corresponding installed::* package reference. repository: DESCRIPTION. packages CRAN repository CRAN, repositories, e.g. R-universe adds repository URL . repotype: cran, bioc missing. rversion: Built field. field, current R version. sysreqs: SystemRequirements field DESCRIPTION. title: package title. type: always installed. version: package version (string). columns unchanged DESCRIPTION, pkgdepends also adds couple.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/lib_status.html","id":"notes-","dir":"Reference","previous_headings":"","what":"Notes:","title":"Status of packages in a library — lib_status","text":"addition, also remote* config/needs/* entries DESCRIPTION files. (Case insensitive.) columns type character, except needscompilation, logical deps, list columns. entry missing package, set NA. Note column names lowercase, even corresponding entries DESCRIPTION. order columns deterministic, assume order. Additional columns might present, internal pkgdepends used user code.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/parse_pkg_refs.html","id":null,"dir":"Reference","previous_headings":"","what":"Parse package location references — parse_pkg_refs","title":"Parse package location references — parse_pkg_refs","text":"See pkg_refs supported package references.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/parse_pkg_refs.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Parse package location references — parse_pkg_refs","text":"","code":"parse_pkg_refs(refs, remote_types = NULL, ...) parse_pkg_ref(ref, remote_types = NULL, ...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/parse_pkg_refs.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Parse package location references — parse_pkg_refs","text":"refs Character vector references. remote_types Custom remote types can added , advanced use, experimental currently. ... Additional arguments passed individual parser functions. ref package reference, like refs, length one vector, convenience.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/parse_pkg_refs.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Parse package location references — parse_pkg_refs","text":"parse_pkg_refs() returns list parsed references. parse_pkg_ref() returns one parsed reference. parsed reference list, least elements: ref: original reference string. type: reference type. package: package name. typically contains additional data, specific various reference types. See pkg_refs details. parsed reference always class remote_ref_ remote_ref.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_config.html","id":null,"dir":"Reference","previous_headings":"","what":"pkgdepends configuration — pkg_config","title":"pkgdepends configuration — pkg_config","text":"Configuration entries several pkgdepends classes.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_config.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"pkgdepends configuration — pkg_config","text":"","code":"current_config()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_config.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"pkgdepends configuration — pkg_config","text":"pkgdepends configuration set several source. , order preference: Function arguments, e.g. config argument new_pkg_installation_proposal(). Global options, set via options(). name global option pkg. prefix plus name pkgdepends configuration entry. E.g. pkg.platforms. Environment variables. name environment variable PKG_ prefix, plus name pkgdepends configuration entry, uppercase. E.g. PKG_PLATFORMS. Default values. classes use entries. E.g. pkg_download_proposal concerned package libraries, 'll ignore library configuration entry. Call current_config() print current configuration.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_config.html","id":"configuration-entries","dir":"Reference","previous_headings":"","what":"Configuration entries","title":"pkgdepends configuration — pkg_config","text":"build_vignettes: Whether build vignettes package trees. used package obtained package tree, source (binary) package archive. default vignettes built case. set TRUE, need make sure vignette builder packages available, installed default currently. cache_dir: Directory download packages . Defaults temporary directory within R session temporary directory, see base::tempdir(). cran_mirror: CRAN mirror use. Defaults repos option (see base::options()), set https://cran.rstudio.com. dependencies: Dependencies consider download install. Defaults hard dependencies, see pkg_dep_types_hard(). following values supported PKG_DEPENDENCIES environment variable: \"TRUE\", \"FALSE\", \"NA\", semicolon separated list dependency types. See as_pkg_dependencies() details. git_submodules: Whether update submodules git repositories. affects git:: gitlab:: package sources . R package subdirectory submodules within directory updated. submodule appears .Rbuildignore, skipped. include_linkingto: Whether always include LinkingTo dependencies solution installation, even needed packages installed binaries. sometimes useful, see e.g. https://github.com/r-lib/pak/issues/485 example use case. library: Package library install packages . also used already installed packages considering dependencies dependency lookup package installation. Defaults first path .libPaths(). metadata_cache_dir: Location metadata replica pkgcache::cranlike_metadata_cache. Defaults temporary directory within R session temporary directory, see base::tempdir(). metadata_update_after: time interval difftime object. pkgdepends update metadata cache older . default one day. PKG_METADATA_UPDATE_AFTER environment variable may set seconds (s suffix), minutes (m suffix), hours (h suffix), days (d suffix). E.g: 1d means one day. package_cache_dir: Package cache location pkgcache::package_cache. default pkgcache default. platforms: Character vector platforms download install packages . See default_platforms() possible platform names. Defaults platform current R session, plus \"source\". r_versions: Character vector, R versions download install packages . defaults current R version. sysreqs: Whether automatically look install system requirements. TRUE, r pak_or_pkgdepends() try install required system packages. FALSE, system requirements still printed (including OS packages supported platforms), installed. default TRUE supported platforms, current user root user password-less sudo configured current user. sysreqs_db_update: Whether try update system requirements database GitHub. update fails, cached build-database used. Defaults TRUE. sysreqs_db_update_timeout: Timeout system requirements database update. Defaults five seconds. sysreqs_dry_run: TRUE, pkgdepends prints system commands install system requirements, execute . sysreqs_platform: platform use system requirements lookup. Linux, system requirements currently supported, must string containing distribution name release, separated dash. E.g.: \"ubuntu-22.04\", \"rhel-9\". sysreqs_rspm_repo_id: Posit Package Manager (formerly RStudio Package Manager) repository id use CRAN system requirements lookup. Defaults RSPM_REPO_ID environment variable, set. set, defaults 1. sysreqs_rspm_url: Root URL Posit Package Manager (formerly RStudio Package Manager) system requirements lookup. default RSPM_ROOT environment variable used, set. set, defaults https://packagemanager.posit.co. sysreqs_sudo: Whether use sudo install system requirements, Unix. default TRUE Linux effective user id current process root user. sysreqs_update: Whether try update system packages already installed. defaults TRUE CI systems: CI environment variable set true. sysreqs_verbose: Whether echo output system requirements installation. Defaults TRUE CI environment variable set. use_bioconductor: Whether automatically use Bioconductor repositories. Defaults TRUE. windows_archs: Character scalar specifying architectures download/install Windows. possible values : \"prefer-x64\": Generally prefer x64 binaries. current R session x64, download/install x64 packages. (packages might still multi-architecture binaries!) current R session i386, download/install packages architectures. might mean compiling packages source binary packages x64 , like CRAN Windows binaries R 4.2.x currently. \"prefer-x64\" default R 4.2.0 later. \"\": Always download/install packages i386 x64 architectures. might need compilation source available binaries x64 , like CRAN Windows binaries R 4.2.x currently. \"\" default R 4.2.0 earlier.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_dep_types.html","id":null,"dir":"Reference","previous_headings":"","what":"Possible package dependency types — pkg_dep_types_hard","title":"Possible package dependency types — pkg_dep_types_hard","text":"Hard dependencies needed package load, soft dependencies optional.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_dep_types.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Possible package dependency types — pkg_dep_types_hard","text":"","code":"pkg_dep_types_hard() pkg_dep_types_soft() pkg_dep_types()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_dep_types.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Possible package dependency types — pkg_dep_types_hard","text":"string vector dependency types, capitalized.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":null,"dir":"Reference","previous_headings":"","what":"R6 class for package dependency lookup — new_pkg_deps","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Look dependencies R packages various sources.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"new_pkg_deps(refs, ...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package dependency lookup — new_pkg_deps","text":"refs Package names references. See 'Package references' syntax. ... Additional arguments, passed pkg_deps$new().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"R6 class for package dependency lookup — new_pkg_deps","text":"new_pkg_deps() returns new pkg_deps object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"R6 class for package dependency lookup — new_pkg_deps","text":"new_pkg_deps() creates new object pkg_deps class. advantage new_pkg_deps() compared using pkg_deps constructor directly avoids making pkgdepends build time dependency. usual steps query package dependencies : Create pkg_deps object new_pkg_deps(). Resolve possible dependencies pkg_deps$resolve(). Solve dependencies, obtain subset possible dependencies can installed together, pkg_deps$solve(). Call pkg_deps$get_solution() list result dependency solver.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"public-methods","dir":"Reference","previous_headings":"","what":"Public methods","title":"R6 class for package dependency lookup — new_pkg_deps","text":"pkg_deps$new() pkg_deps$get_refs() pkg_deps$get_config() pkg_deps$resolve() pkg_deps$async_resolve() pkg_deps$get_resolution() pkg_deps$get_solve_policy() pkg_deps$set_solve_policy() pkg_deps$solve() pkg_deps$get_solution() pkg_deps$stop_for_solution_error() pkg_deps$draw() pkg_deps$format() pkg_deps$print() pkg_deps$clone()","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-new-","dir":"Reference","previous_headings":"","what":"Method new()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Create new pkg_deps object. Consider using new_pkg_deps() instead calling constructor directly. returned object can used look (recursive) dependencies R packages various sources. perform actual lookup, need call resolve() method.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$new( refs, config = list(), policy = c(\"lazy\", \"upgrade\"), remote_types = NULL )"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"arguments-1","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package dependency lookup — new_pkg_deps","text":"refs Package names references. See 'Package references' syntax. config Configuration options, named list. See 'Configuration'. policy Solution policy. See 'dependency solver'. remote_types Custom remote ref types, advanced use, experimental currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"new pkg_deps object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-get-refs-","dir":"Reference","previous_headings":"","what":"Method get_refs()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"package refs used create pkg_deps object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-1","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$get_refs()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-1","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"character vector package refs used create pkg_deps object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-get-config-","dir":"Reference","previous_headings":"","what":"Method get_config()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Configuration options pkg_deps object. See 'Configuration' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-2","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$get_config()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-2","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"See 'Configuration' configuration entries.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-resolve-","dir":"Reference","previous_headings":"","what":"Method resolve()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Resolve dependencies specified package references. usually means downloading metadata CRAN Bioconductor, unless already cached, also GitHub GitHub refs included, either directly indirectly. See 'Dependency resolution' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-3","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-3","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"pkg_deps object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-async-resolve-","dir":"Reference","previous_headings":"","what":"Method async_resolve()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"resolve(), asynchronous. method advanced use.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-4","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$async_resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-4","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"deferred value.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-get-resolution-","dir":"Reference","previous_headings":"","what":"Method get_resolution()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Query result dependency resolution. method can called resolve() completed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-5","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$get_resolution()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-5","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"pkg_resolution_result object, also data frame. See 'Dependency resolution' columns.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-get-solve-policy-","dir":"Reference","previous_headings":"","what":"Method get_solve_policy()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Returns current policy dependency solver. See 'dependency solver' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-6","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$get_solve_policy()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-6","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"character vector length one.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-set-solve-policy-","dir":"Reference","previous_headings":"","what":"Method set_solve_policy()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Set current policy dependency solver. object already contains solution new policy different old policy, solution deleted. See 'dependency solver' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-7","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$set_solve_policy(policy = c(\"lazy\", \"upgrade\"))"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"arguments-2","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package dependency lookup — new_pkg_deps","text":"policy Policy set.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-solve-","dir":"Reference","previous_headings":"","what":"Method solve()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Solve package dependencies. resolved dependencies, works set packages, can installed together create functional installation. set includes directly specified packages, required (suggested, depending configuration) packages well. includes every package . See 'dependency solver' details. solve() calls resolve() automatically, called yet.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-8","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$solve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-7","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"pkg_deps object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-get-solution-","dir":"Reference","previous_headings":"","what":"Method get_solution()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Returns solution package dependencies.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-9","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$get_solution()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-8","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"pkg_solution_result object, list. See pkg_solution_result details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-stop-for-solution-error-","dir":"Reference","previous_headings":"","what":"Method stop_for_solution_error()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Error dependency solver failed find consistent set packages can installed together.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-10","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$stop_for_solution_error()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-draw-","dir":"Reference","previous_headings":"","what":"Method draw()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Draw tree package dependencies. returns tree object, see cli::tree(). Printing object prints dependency tree screen.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-11","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$draw()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-9","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"tree object cli package, see cli::tree().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-format-","dir":"Reference","previous_headings":"","what":"Method format()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Format pkg_deps object, typically printing.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-12","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$format(...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"arguments-3","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package dependency lookup — new_pkg_deps","text":"... used currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-10","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"character vector, element line printout.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-print-","dir":"Reference","previous_headings":"","what":"Method print()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"Prints pkg_deps object screen. printout includes: package refs. Whether object resolved dependencies. Whether resolution errors. Whether object solved dependencies. Whether solution errors. Advice methods call next. See example .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-13","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$print(...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"arguments-4","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package dependency lookup — new_pkg_deps","text":"... used currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"returns-11","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package dependency lookup — new_pkg_deps","text":"pkg_deps object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"method-clone-","dir":"Reference","previous_headings":"","what":"Method clone()","title":"R6 class for package dependency lookup — new_pkg_deps","text":"objects class cloneable method.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"usage-14","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"pkg_deps$clone(deep = FALSE)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"arguments-5","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package dependency lookup — new_pkg_deps","text":"deep Whether make deep clone.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_deps.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"R6 class for package dependency lookup — new_pkg_deps","text":"","code":"# Method initialize() pd <- pkg_deps$new(\"r-lib/pkgdepends\") pd #> #> + refs: #> - r-lib/pkgdepends #> (use `$resolve()` to resolve dependencies) #> (use `$solve()` to solve dependencies) # Method get_refs() pd <- new_pkg_deps(c(\"pak\", \"jsonlite\")) pd$get_refs() #> [1] \"pak\" \"jsonlite\" # Method get_config() pd <- new_pkg_deps(\"pak\") pd$get_config() #> # pkg config #> ## build_vignettes #> #> [1] FALSE #> #> ## sysreqs_verbose #> #> [1] TRUE #> #> ## sysreqs_db_update #> #> [1] TRUE #> #> ## metadata_cache_dir #> #> [1] \"/tmp/RtmpGEnyB9/file1a7885c856f\" #> #> ## platforms #> #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" \"source\" #> #> ## goal #> #> [1] \"unknown\" #> #> ## r_versions #> #> [1] \"4.4.0\" #> #> ## cache_dir #> #> [1] \"/tmp/RtmpGEnyB9/file1a78668aa24c\" #> #> ## library #> #> [1] \"/tmp/RtmpGEnyB9/file1a787250ef9d\" #> #> ## metadata_update_after #> #> Time difference of 24 hours #> #> ## include_linkingto #> #> [1] FALSE #> #> ## sysreqs_rspm_repo_id #> #> [1] \"1\" #> #> ## sysreqs_update #> #> [1] TRUE #> #> ## package_cache_dir #> #> NULL #> #> ## sysreqs_rspm_url #> #> [1] \"https://packagemanager.posit.co\" #> #> ## sysreqs_sudo #> #> [1] TRUE #> #> ## sysreqs_db_update_timeout #> #> Time difference of 5 secs #> #> ## sysreqs_lookup_system #> #> [1] FALSE #> #> ## git_submodules #> #> [1] FALSE #> #> ## sysreqs_platform #> #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" #> #> ## dependencies #> #> [1] \"Depends\" \"Imports\" \"LinkingTo\" #> #> ## sysreqs #> #> [1] TRUE #> #> ## sysreqs_dry_run #> #> [1] FALSE #> #> ## windows_archs #> #> [1] \"prefer-x64\" #> #> ## use_bioconductor #> #> [1] TRUE #> #> ## cran_mirror #> #> CRAN #> \"https://cran.rstudio.com\" #> # Method resolve() pd <- new_pkg_deps(\"pak\") pd$resolve() #> #> ✔ Updated metadata database: 3.45 MB in 3 files. #> #> ℹ Updating metadata database #> ✔ Updating metadata database ... done #> pd$get_resolution() #> # A data frame: 2 × 35 #> ref type direct directpkg status package version license #> #> 1 pak standard TRUE TRUE OK pak 0.7.2 GPL-3 #> 2 pak standard TRUE TRUE OK pak 0.7.2 GPL-3 #> # ℹ 27 more variables: needscompilation , priority , #> # md5sum , sha256 , filesize , built , #> # platform , rversion , repotype , repodir , #> # target , deps , mirror , sources , #> # remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , #> # cache_status , sysreqs_packages , … # Method get_resolution() pd <- new_pkg_deps(\"r-lib/pkgdepends\") pd$resolve() pd$get_resolution() #> # A data frame: 27 × 35 #> ref type direct directpkg status package version license #> #> 1 r-lib/pkgdepends github TRUE TRUE OK pkgdep… 0.7.2.… MIT + … #> 2 callr stand… FALSE FALSE OK callr 3.7.6 MIT + … #> 3 cli stand… FALSE FALSE OK cli 3.6.2 MIT + … #> 4 curl stand… FALSE FALSE OK curl 5.2.1 MIT + … #> 5 desc stand… FALSE FALSE OK desc 1.4.3 MIT + … #> 6 filelock stand… FALSE FALSE OK filelo… 1.0.3 MIT + … #> 7 jsonlite stand… FALSE FALSE OK jsonli… 1.8.8 MIT + … #> 8 lpSolve stand… FALSE FALSE OK lpSolve 5.6.20 LGPL-2 #> 9 pkgbuild stand… FALSE FALSE OK pkgbui… 1.4.4 MIT + … #> 10 pkgcache stand… FALSE FALSE OK pkgcac… 2.2.2 MIT + … #> # ℹ 17 more rows #> # ℹ 27 more variables: needscompilation , priority , #> # md5sum , sha256 , filesize , built , #> # platform , rversion , repotype , repodir , #> # target , deps , mirror , sources , #> # remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , … # Method get_solve_policy() pdi <- new_pkg_deps(\"r-lib/pkgdepends\") pdi$get_solve_policy() #> [1] \"lazy\" pdi$set_solve_policy(\"upgrade\") pdi$get_solve_policy() #> [1] \"upgrade\" # Method set_solve_policy() pdi <- new_pkg_deps(\"r-lib/pkgdepends\") pdi$get_solve_policy() #> [1] \"lazy\" pdi$set_solve_policy(\"upgrade\") pdi$get_solve_policy() #> [1] \"upgrade\" # Method solve() pd <- new_pkg_deps(\"r-lib/pkgdepends\") pd$resolve() pd$solve() pd$get_solution() #> #> + result: OK #> + refs: #> - r-lib/pkgdepends #> + constraints (58): #> - select pkgdepends exactly once #> - select callr at most once #> - select cli at most once #> - select curl at most once #> - select desc at most once #> - select filelock at most once #> - select jsonlite at most once #> - select lpSolve at most once #> - select pkgbuild at most once #> - select pkgcache at most once #> ... #> + solution: #> - R6 #> - callr #> - cli #> - curl #> - desc #> - filelock #> - jsonlite #> - lpSolve #> - pkgbuild #> - pkgcache #> - processx #> - ps #> - r-lib/pkgdepends #> - zip # Method get_solution() pd <- new_pkg_deps(\"pkgload\") pd$resolve() pd$solve() pd$get_solution() #> #> + result: OK #> + refs: #> - pkgload #> + constraints (48): #> - select pkgload exactly once #> - select callr at most once #> - select cli at most once #> - select crayon at most once #> - select desc at most once #> - select fs at most once #> - select glue at most once #> - select pkgbuild at most once #> - select processx at most once #> - select ps at most once #> ... #> + solution: #> - R6 #> - callr #> - cli #> - crayon #> - desc #> - fs #> - glue #> - pkgbuild #> - pkgload #> - processx #> - ps #> - rlang #> - rprojroot #> - withr # Method stop_for_solution_error() # This is an error, because the packages conflict: pd <- new_pkg_deps( c(\"r-lib/pak\", \"cran::pak\"), config = list(library = tempfile()) ) pd$resolve() pd$solve() pd #> #> + refs: #> - r-lib/pak #> - cran::pak #> + has resolution (+0 dependencies) #> + has solution #> x has solution errors #> (use `$get_resolution()` to see resolution results) #> (use `$show_solution()` to see the dependencies #> (use `$get_solution()` to see the full solution results) # This fails: # pd$stop_for_solution_error() # Method draw() pd <- new_pkg_deps(\"pkgload\") pd$solve() pd$draw() #> pkgload 1.3.4 [new][dl] (unknown size) #> ├─cli 3.6.2 [new][dl] (unknown size) #> ├─crayon 1.5.2 [new][dl] (unknown size) #> ├─desc 1.4.3 [new][dl] (unknown size) #> │ ├─cli #> │ └─R6 2.5.1 [new][dl] (unknown size) #> ├─fs 1.6.4 [new][dl] (unknown size) #> ├─glue 1.7.0 [new][dl] (unknown size) #> ├─pkgbuild 1.4.4 [new][dl] (unknown size) #> │ ├─callr 3.7.6 [new][dl] (unknown size) #> │ │ ├─processx 3.8.4 [new][dl] (unknown size) #> │ │ │ ├─ps 1.7.6 [new][dl] (unknown size) #> │ │ │ └─R6 #> │ │ └─R6 #> │ ├─cli #> │ ├─desc #> │ ├─processx #> │ └─R6 #> ├─rlang 1.1.3 [new][dl] (unknown size) #> ├─rprojroot 2.0.4 [new][dl] (unknown size) #> └─withr 3.0.0 [new][dl] (unknown size) #> #> Key: [new] new | [dl] download # Method print() pd <- new_pkg_deps(\"r-lib/pkgdepends\") pd #> #> + refs: #> - r-lib/pkgdepends #> (use `$resolve()` to resolve dependencies) #> (use `$solve()` to solve dependencies) pd$resolve() pd #> #> + refs: #> - r-lib/pkgdepends #> + has resolution (+13 dependencies) #> (use `$get_resolution()` to see resolution results) #> (use `$solve()` to solve dependencies) pd$solve() pd #> #> + refs: #> - r-lib/pkgdepends #> + has resolution (+13 dependencies) #> + has solution #> (use `$get_resolution()` to see resolution results) #> (use `$show_solution()` to see the dependencies #> (use `$get_solution()` to see the full solution results) #> (use `$draw()` to draw the dependency tree)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":null,"dir":"Reference","previous_headings":"","what":"R6 class for package downloads — new_pkg_download_proposal","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Download packages dependencies, various sources.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"new_pkg_download_proposal(refs, ...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package downloads — new_pkg_download_proposal","text":"refs Package names references. See 'Package references' syntax. ... Additional arguments, passed pkg_download_proposal$new().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"R6 class for package downloads — new_pkg_download_proposal","text":"new_pkg_download_proposal() returns new pkg_download_proposal object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"R6 class for package downloads — new_pkg_download_proposal","text":"new_pkg_download_proposal() creates new object pkg_download_proposal class, can used look download R packages dependencies. advantage new_pkg_download_proposal() compared using pkg_download_proposal constructor directly avoids making pkgdepends build time dependency. Typical workflow download set packages: Create pkg_download_proposal object new_pkg_download_proposal(). Resolve possible dependencies pkg_download_proposal$resolve(). Download files pkg_download_proposal$download(). Get data packages downloads pkg_download_proposal$get_downloads().","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"public-methods","dir":"Reference","previous_headings":"","what":"Public methods","title":"R6 class for package downloads — new_pkg_download_proposal","text":"pkg_download_proposal$new() pkg_download_proposal$get_refs() pkg_download_proposal$get_config() pkg_download_proposal$resolve() pkg_download_proposal$async_resolve() pkg_download_proposal$get_resolution() pkg_download_proposal$download() pkg_download_proposal$async_download() pkg_download_proposal$get_downloads() pkg_download_proposal$stop_for_download_error() pkg_download_proposal$format() pkg_download_proposal$print() pkg_download_proposal$clone()","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-new-","dir":"Reference","previous_headings":"","what":"Method new()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Create new pkg_download_proposal object. Consider using new_pkg_download_proposal() instead calling constructor directly. returned object can used look (recursive) dependencies R packages various sources, download package files.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$new(refs, config = list(), remote_types = NULL)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"arguments-1","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package downloads — new_pkg_download_proposal","text":"refs Package names references. See 'Package references' syntax. config Configuration options, named list. See 'Configuration'. remote_types Custom remote ref types, advanced use, experimental currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"examples","dir":"Reference","previous_headings":"","what":"Examples","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pdl <- pkg_download_proposal$new(\"r-lib/pkgdepends\") pdl"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-get-refs-","dir":"Reference","previous_headings":"","what":"Method get_refs()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"package refs used create pkg_download_proposal object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-1","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$get_refs()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"character vector package refs used create pkg_download_proposal object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-get-config-","dir":"Reference","previous_headings":"","what":"Method get_config()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Configuration options pkg_download_proposal object. See 'Configuration' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-2","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$get_config()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-1","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Named list. See 'Configuration' configuration options.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-resolve-","dir":"Reference","previous_headings":"","what":"Method resolve()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Resolve dependencies specified package references. usually means downloading metadata CRAN Bioconductor, unless already cached, also GitHub GitHub refs included, either directly indirectly. See 'Dependency resolution' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-3","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-2","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"pkg_download_proposal object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-async-resolve-","dir":"Reference","previous_headings":"","what":"Method async_resolve()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"resolve(), asynchronous. method advanced use.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-4","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$async_resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-3","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"deferred value.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-get-resolution-","dir":"Reference","previous_headings":"","what":"Method get_resolution()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Query result dependency resolution. method can called resolve() completed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-5","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$get_resolution()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-4","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"pkg_resolution_result object, also data frame. See 'Dependency resolution' columns.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-download-","dir":"Reference","previous_headings":"","what":"Method download()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Download resolved packages. uses package cache pkgcache package default, avoid downloads possible.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-6","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$download()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-5","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"pkg_download_proposal object, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-async-download-","dir":"Reference","previous_headings":"","what":"Method async_download()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"download(), asynchronous. method advanced use.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-7","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$async_download()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-6","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"deferred value.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-get-downloads-","dir":"Reference","previous_headings":"","what":"Method get_downloads()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Returns summary package downloads.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-8","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$get_downloads()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-7","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"pkg_download_result object, list. See pkg_download_result details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-stop-for-download-error-","dir":"Reference","previous_headings":"","what":"Method stop_for_download_error()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Throw error downloads failed recent pkg_download_proposal$download() call.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-9","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$stop_for_download_error()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-format-","dir":"Reference","previous_headings":"","what":"Method format()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Format pkg_download_proposal object, typically printing.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-10","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$format(...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"arguments-2","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package downloads — new_pkg_download_proposal","text":"... used currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-8","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Nothing. character vector, element line printout.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-print-","dir":"Reference","previous_headings":"","what":"Method print()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"Prints pkg_download_proposal object screen. printout includes: package refs. Whether object resolved dependencies. Whether resolution errors. Whether downloads completed. Whether downloads errors. Advice methods call next. See example .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-11","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$print(...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"arguments-3","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package downloads — new_pkg_download_proposal","text":"... used currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"returns-9","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package downloads — new_pkg_download_proposal","text":"pkg_download_proposal object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"method-clone-","dir":"Reference","previous_headings":"","what":"Method clone()","title":"R6 class for package downloads — new_pkg_download_proposal","text":"objects class cloneable method.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"usage-12","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"pkg_download_proposal$clone(deep = FALSE)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"arguments-4","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package downloads — new_pkg_download_proposal","text":"deep Whether make deep clone.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_download_proposal.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"R6 class for package downloads — new_pkg_download_proposal","text":"","code":"# Method get_refs() pdl <- new_pkg_download_proposal(c(\"pak\", \"jsonlite\")) pdl$get_refs() #> [1] \"pak\" \"jsonlite\" # Method get_config() pdl <- new_pkg_download_proposal(\"pak\") pdl$get_config() #> # pkg config #> ## build_vignettes #> #> [1] FALSE #> #> ## sysreqs_verbose #> #> [1] TRUE #> #> ## sysreqs_db_update #> #> [1] TRUE #> #> ## metadata_cache_dir #> #> [1] \"/tmp/RtmpGEnyB9/file1a781aa01059\" #> #> ## platforms #> #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" \"source\" #> #> ## goal #> #> [1] \"unknown\" #> #> ## r_versions #> #> [1] \"4.4.0\" #> #> ## cache_dir #> #> [1] \"/tmp/RtmpGEnyB9/file1a78668aa24c\" #> #> ## library #> #> NULL #> #> ## metadata_update_after #> #> Time difference of 24 hours #> #> ## include_linkingto #> #> [1] FALSE #> #> ## sysreqs_rspm_repo_id #> #> [1] \"1\" #> #> ## sysreqs_update #> #> [1] TRUE #> #> ## package_cache_dir #> #> NULL #> #> ## sysreqs_rspm_url #> #> [1] \"https://packagemanager.posit.co\" #> #> ## sysreqs_sudo #> #> [1] TRUE #> #> ## sysreqs_db_update_timeout #> #> Time difference of 5 secs #> #> ## sysreqs_lookup_system #> #> [1] TRUE #> #> ## git_submodules #> #> [1] FALSE #> #> ## sysreqs_platform #> #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" #> #> ## dependencies #> #> [1] \"Depends\" \"Imports\" \"LinkingTo\" #> #> ## sysreqs #> #> [1] TRUE #> #> ## sysreqs_dry_run #> #> [1] FALSE #> #> ## windows_archs #> #> [1] \"prefer-x64\" #> #> ## use_bioconductor #> #> [1] TRUE #> #> ## cran_mirror #> #> CRAN #> \"https://cran.rstudio.com\" #> # Method resolve() pdl <- new_pkg_download_proposal(\"pak\") pdl$resolve() pdl$get_resolution() #> # A data frame: 2 × 35 #> ref type direct directpkg status package version license #> #> 1 pak standard TRUE TRUE OK pak 0.7.2 GPL-3 #> 2 pak standard TRUE TRUE OK pak 0.7.2 GPL-3 #> # ℹ 27 more variables: needscompilation , priority , #> # md5sum , sha256 , filesize , built , #> # platform , rversion , repotype , repodir , #> # target , deps , mirror , sources , #> # remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , #> # cache_status , sysreqs_packages , … # Method get_resolution() pdl <- new_pkg_download_proposal(\"r-lib/pkgdepends\") pdl$resolve() pdl$get_resolution() #> # A data frame: 27 × 35 #> ref type direct directpkg status package version license #> #> 1 r-lib/pkgdepends github TRUE TRUE OK pkgdep… 0.7.2.… MIT + … #> 2 callr stand… FALSE FALSE OK callr 3.7.6 MIT + … #> 3 cli stand… FALSE FALSE OK cli 3.6.2 MIT + … #> 4 curl stand… FALSE FALSE OK curl 5.2.1 MIT + … #> 5 desc stand… FALSE FALSE OK desc 1.4.3 MIT + … #> 6 filelock stand… FALSE FALSE OK filelo… 1.0.3 MIT + … #> 7 jsonlite stand… FALSE FALSE OK jsonli… 1.8.8 MIT + … #> 8 lpSolve stand… FALSE FALSE OK lpSolve 5.6.20 LGPL-2 #> 9 pkgbuild stand… FALSE FALSE OK pkgbui… 1.4.4 MIT + … #> 10 pkgcache stand… FALSE FALSE OK pkgcac… 2.2.2 MIT + … #> # ℹ 17 more rows #> # ℹ 27 more variables: needscompilation , priority , #> # md5sum , sha256 , filesize , built , #> # platform , rversion , repotype , repodir , #> # target , deps , mirror , sources , #> # remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , … # Method download() pdl <- new_pkg_download_proposal(\"r-lib/pkgdepends\") pdl$resolve() pdl$download() #> ℹ Getting 13 pkgs (3.80 MB) and 14 pkgs with unknown sizes #> ✔ Got callr 3.7.6 (source) (104.36 kB) #> ✔ Got desc 1.4.3 (source) (80.07 kB) #> ✔ Got pkgbuild 1.4.4 (source) (48.79 kB) #> ✔ Got filelock 1.0.3 (source) (15.44 kB) #> ✔ Got ps 1.7.6 (source) (129.49 kB) #> ✔ Got filelock 1.0.3 (x86_64-pc-linux-gnu-ubuntu-22.04) (24.75 kB) #> ✔ Got R6 2.5.1 (source) (63.42 kB) #> ✔ Got cli 3.6.2 (source) (569.77 kB) #> ✔ Got R6 2.5.1 (x86_64-pc-linux-gnu-ubuntu-22.04) (83.25 kB) #> ✔ Got zip 2.3.1 (source) (111.28 kB) #> ✔ Got pkgcache 2.2.2 (source) (271.72 kB) #> ✔ Got curl 5.2.1 (source) (716.70 kB) #> ✔ Got processx 3.8.4 (source) (163.98 kB) #> ✔ Got lpSolve 5.6.20 (x86_64-pc-linux-gnu-ubuntu-22.04) (373.78 kB) #> ✔ Got callr 3.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) (445.43 kB) #> ✔ Got lpSolve 5.6.20 (source) (468.22 kB) #> ✔ Got desc 1.4.3 (x86_64-pc-linux-gnu-ubuntu-22.04) (334.41 kB) #> ✔ Got pkgbuild 1.4.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (202.26 kB) #> ✔ Got curl 5.2.1 (x86_64-pc-linux-gnu-ubuntu-22.04) (768.44 kB) #> ✔ Got processx 3.8.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (444.53 kB) #> ✔ Got jsonlite 1.8.8 (source) (1.05 MB) #> ✔ Got jsonlite 1.8.8 (x86_64-pc-linux-gnu-ubuntu-22.04) (1.09 MB) #> ✔ Got ps 1.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) (392.88 kB) #> ✔ Got cli 3.6.2 (x86_64-pc-linux-gnu-ubuntu-22.04) (1.30 MB) #> ✔ Got pkgcache 2.2.2 (x86_64-pc-linux-gnu-ubuntu-22.04) (927.93 kB) #> ✔ Got zip 2.3.1 (x86_64-pc-linux-gnu-ubuntu-22.04) (636.87 kB) #> ✔ Got pkgdepends 0.7.2.9000 (source) (716.54 kB) pdl$get_downloads() #> # A data frame: 27 × 40 #> ref type direct directpkg status package version license #> #> 1 r-lib/pkgdepends github TRUE TRUE OK pkgdep… 0.7.2.… MIT + … #> 2 callr stand… FALSE FALSE OK callr 3.7.6 MIT + … #> 3 cli stand… FALSE FALSE OK cli 3.6.2 MIT + … #> 4 curl stand… FALSE FALSE OK curl 5.2.1 MIT + … #> 5 desc stand… FALSE FALSE OK desc 1.4.3 MIT + … #> 6 filelock stand… FALSE FALSE OK filelo… 1.0.3 MIT + … #> 7 jsonlite stand… FALSE FALSE OK jsonli… 1.8.8 MIT + … #> 8 lpSolve stand… FALSE FALSE OK lpSolve 5.6.20 LGPL-2 #> 9 pkgbuild stand… FALSE FALSE OK pkgbui… 1.4.4 MIT + … #> 10 pkgcache stand… FALSE FALSE OK pkgcac… 2.2.2 MIT + … #> # ℹ 17 more rows #> # ℹ 32 more variables: needscompilation , priority , #> # md5sum , sha256 , filesize , built , #> # platform , rversion , repotype , repodir , #> # target , deps , mirror , sources , #> # remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , … # Method get_downloads() pdl <- new_pkg_download_proposal(\"pkgload\") pdl$resolve() pdl$download() #> ℹ Getting 7 pkgs (2.34 MB) and 14 pkgs with unknown sizes, 7 (1.16 MB) cached #> ✔ Got crayon 1.5.2 (source) (40.57 kB) #> ✔ Got pkgload 1.3.4 (source) (78.19 kB) #> ✔ Got rprojroot 2.0.4 (source) (59.95 kB) #> ✔ Got glue 1.7.0 (source) (105.42 kB) #> ✔ Got withr 3.0.0 (source) (107.68 kB) #> ✔ Cached copy of cli 3.6.2 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of desc 1.4.3 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of callr 3.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Got fs 1.6.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (309.52 kB) #> ✔ Got rlang 1.1.3 (source) (763.76 kB) #> ✔ Got crayon 1.5.2 (x86_64-pc-linux-gnu-ubuntu-22.04) (162.94 kB) #> ✔ Cached copy of pkgbuild 1.4.4 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of ps 1.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Got glue 1.7.0 (x86_64-pc-linux-gnu-ubuntu-22.04) (153.02 kB) #> ✔ Cached copy of processx 3.8.4 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Got fs 1.6.4 (source) (1.20 MB) #> ✔ Cached copy of R6 2.5.1 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Got rprojroot 2.0.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (107.18 kB) #> ✔ Got withr 3.0.0 (x86_64-pc-linux-gnu-ubuntu-22.04) (242.10 kB) #> ✔ Got pkgload 1.3.4 (x86_64-pc-linux-gnu-ubuntu-22.04) (180.47 kB) #> ✔ Got rlang 1.1.3 (x86_64-pc-linux-gnu-ubuntu-22.04) (1.59 MB) pdl$get_downloads() #> # A data frame: 28 × 40 #> ref type direct directpkg status package version license #> #> 1 callr standard FALSE FALSE OK callr 3.7.6 MIT + file … #> 2 cli standard FALSE FALSE OK cli 3.6.2 MIT + file … #> 3 crayon standard FALSE FALSE OK crayon 1.5.2 MIT + file … #> 4 desc standard FALSE FALSE OK desc 1.4.3 MIT + file … #> 5 fs standard FALSE FALSE OK fs 1.6.4 MIT + file … #> 6 glue standard FALSE FALSE OK glue 1.7.0 MIT + file … #> 7 pkgbuild standard FALSE FALSE OK pkgbuild 1.4.4 MIT + file … #> 8 pkgload standard TRUE TRUE OK pkgload 1.3.4 GPL-3 #> 9 processx standard FALSE FALSE OK processx 3.8.4 MIT + file … #> 10 ps standard FALSE FALSE OK ps 1.7.6 MIT + file … #> # ℹ 18 more rows #> # ℹ 32 more variables: needscompilation , priority , #> # md5sum , sha256 , filesize , built , #> # platform , rversion , repotype , repodir , #> # target , deps , mirror , sources , #> # remote , error , metadata , extra , #> # dep_types , params , sysreqs , os_type , … # Method print() pdl <- new_pkg_download_proposal(\"r-lib/pkgdepends\") pdl #> #> + refs: #> - r-lib/pkgdepends #> (use `$resolve()` to resolve dependencies) pdl$resolve() pdl #> #> + refs: #> - r-lib/pkgdepends #> + has resolution (+13 dependencies) #> (use `$download()` to download packages) #> (use `$get_resolution()` to see resolution results) pdl$download() #> ℹ Getting 14 pkgs with unknown sizes, 13 (3.80 MB) cached #> ✔ Cached copy of pkgdepends 0.7.2.9000 (source) is the latest build #> ✔ Cached copy of callr 3.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of cli 3.6.2 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of curl 5.2.1 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of jsonlite 1.8.8 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of filelock 1.0.3 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of pkgbuild 1.4.4 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of zip 2.3.1 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of processx 3.8.4 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of pkgcache 2.2.2 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of desc 1.4.3 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of ps 1.7.6 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of R6 2.5.1 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build #> ✔ Cached copy of lpSolve 5.6.20 (x86_64-pc-linux-gnu-ubuntu-22.04) is the latest build pdl #> #> + refs: #> - r-lib/pkgdepends #> + has resolution (+13 dependencies) #> + has downloads #> (use `$get_resolution()` to see resolution results) #> (use `$get_downloads()` to get download data)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_downloads.html","id":null,"dir":"Reference","previous_headings":"","what":"Package downloads — pkg_downloads","title":"Package downloads — pkg_downloads","text":"pkg_download_proposal pkg_installation_proposal classes download methods, downloads package files configured directory (see 'Configuration').","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_downloads.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Package downloads — pkg_downloads","text":"return pkg_download_result object, data frame, adds extra columns pkg_resolution_result (pkg_download_proposal) pkg_solution_result (pkg_installation_proposal): built: Built field DESCRIPTION file binary packages, information available. cache_status: whether package file package cache. NA installed:: package refs. dep_types: character vector dependency types considered package. (list column.) deps: dependencies package, data frame. See \"Package dependency tables\" . direct: whether package (ref, really) directly specified, added dependency. error: list column contains error objects refs pkgdepends failed resolve. filesize: file size bytes, NA information available. license: license package, NA available. md5sum: MD5 checksum package file, available, NA . metadata: named character vector. fields () added installed DESCRIPTION file package. mirror: URL CRAN(-like) mirror site metadata obtained . NA non-CRAN-like sources, e.g. local files, installed packages, GitHub, etc. needscompilation: whether package needs compilation. package: package name. priority: \"base\" base packages, \"recommended\" recommended packages, NA otherwise. ref: package reference. remote: parsed remote_ref objects, see parse_pkg_refs(). list column. repodir: directory package CRAN-like repository. sha256: SHA256 hash package file, available, otherwise NA. sources: URLs package can downloaded . necessarily URL can download HTTP client. E.g. local:: refs path, git:: refs URL git. zero length vector installed:: refs. status: status dependency resolution, \"OK\" \"FAILED\". target: path package saved CRAN-repository. type: ref type. version: package version. fulltarget: absolute path downloaded file. one fulltarget fulltarget_tree must exist disk. fulltarget_tree: absolute path package tree directory. one fulltarget fulltarget_tree must exist disk. download_status: \"\" \"Got\", depending whether file obtained cache. download_error: error object failed downloads. file_size: Size file, NA. installed:: refs, NA, also NA refs created fulltarget_tree instead fulltarget. fulltarget, exists, contains packaged (via R CMD build) source R package. fulltarget_tree exists, package tree directory, still needs R CMD build call. Additional columns might present. either used internally experimental. might removed changed time. columns type character, except direct (logical), needscompilation (logical), filesize (integer), deps (list column, see \"Package dependency tables\" ), sources (list character vectors), remote (list), error (list), metadata (list), dep_types (list).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_downloads.html","id":"package-dependency-tables","dir":"Reference","previous_headings":"","what":"Package dependency tables","title":"Package downloads — pkg_downloads","text":"package dependency tables deps list column five columns currently: ref: package ref dependency. type: dependency type, lowercase. .e. imports, suggests, etc. package: package name dependency. op: operator version requirements, e.g. >=. version: version number, version requirements.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":null,"dir":"Reference","previous_headings":"","what":"R6 class for installation from a lock file — new_pkg_installation_plan","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"installation plan similar installation proposal (.e. pkg_installation_proposal), already contains solved dependencies, complete download URLs.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"new_pkg_installation_plan(lockfile = \"pkg.lock\", config = list(), ...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"lockfile Path lock file use. config Configuration options, named list. See 'Configuration'. include library, .libPaths()[1] added library. ... Additional arguments, passed pkg_installation_plan$new().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"new_pkg_installation_plan() returns pkg_installation_plan object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"Typically create pkg_installation_plan object new_pkg_installation_plan() call $download() method download packages $install() method install .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"super-class","dir":"Reference","previous_headings":"","what":"Super class","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"pkgdepends::pkg_installation_proposal -> pkg_installation_plan","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"methods","dir":"Reference","previous_headings":"","what":"Methods","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"pkgdepends::pkg_installation_proposal$async_download() pkgdepends::pkg_installation_proposal$create_lockfile() pkgdepends::pkg_installation_proposal$download() pkgdepends::pkg_installation_proposal$draw() pkgdepends::pkg_installation_proposal$get_config() pkgdepends::pkg_installation_proposal$get_downloads() pkgdepends::pkg_installation_proposal$get_install_plan() pkgdepends::pkg_installation_proposal$get_refs() pkgdepends::pkg_installation_proposal$get_resolution() pkgdepends::pkg_installation_proposal$get_solution() pkgdepends::pkg_installation_proposal$get_sysreqs() pkgdepends::pkg_installation_proposal$install() pkgdepends::pkg_installation_proposal$install_sysreqs() pkgdepends::pkg_installation_proposal$print() pkgdepends::pkg_installation_proposal$show_solution() pkgdepends::pkg_installation_proposal$show_sysreqs() pkgdepends::pkg_installation_proposal$stop_for_download_error() pkgdepends::pkg_installation_proposal$stop_for_solution_error()","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"public-methods","dir":"Reference","previous_headings":"","what":"Public methods","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"pkg_installation_plan$new() pkg_installation_plan$resolve() pkg_installation_plan$async_resolve() pkg_installation_plan$get_solve_policy() pkg_installation_plan$set_solve_policy() pkg_installation_plan$solve() pkg_installation_plan$update() pkg_installation_plan$update_sysreqs() pkg_installation_plan$format() pkg_installation_plan$clone()","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-new-","dir":"Reference","previous_headings":"","what":"Method new()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"Create new pkg_installation_plan object. Consider using new_pkg_installation_plan() instead calling constructor directly. returned object can used download install packages, according plan.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$new( lockfile = \"pkg.lock\", config = list(), remote_types = NULL )"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"arguments-1","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"lockfile Path lock file use. config Configuration options. See 'Configuration'. needs include package library install , library. remote_types Custom remote ref types, advanced use, experimental currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-resolve-","dir":"Reference","previous_headings":"","what":"Method resolve()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"function implemented installation plans, error.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-1","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-async-resolve-","dir":"Reference","previous_headings":"","what":"Method async_resolve()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"function implemented installation plans, error.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-2","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$async_resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-get-solve-policy-","dir":"Reference","previous_headings":"","what":"Method get_solve_policy()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"Installation plans already solved, method return NA_character_, always.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-3","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$get_solve_policy()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-set-solve-policy-","dir":"Reference","previous_headings":"","what":"Method set_solve_policy()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"function implemented installation plans, error.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-4","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$set_solve_policy()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-solve-","dir":"Reference","previous_headings":"","what":"Method solve()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"function implemented installation plans, error.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-5","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$solve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-update-","dir":"Reference","previous_headings":"","what":"Method update()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"Update plan current state library. library changed since plan created, nothing. new packages installed, might necessary download install packages plan.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-6","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$update()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"details-1","dir":"Reference","previous_headings":"","what":"Details","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"operation different creating new proposal updated library, uses packages package versions original plan. E.g. library newer version package, $update() downgrade version plan.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-update-sysreqs-","dir":"Reference","previous_headings":"","what":"Method update_sysreqs()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"Update information installed missing system requirements.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-7","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$update_sysreqs()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-format-","dir":"Reference","previous_headings":"","what":"Method format()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"Format pkg_installation_plan object, typically printing.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-8","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$format(...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"arguments-2","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"... used currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"returns","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"character vector, element line printout.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"method-clone-","dir":"Reference","previous_headings":"","what":"Method clone()","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"objects class cloneable method.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"usage-9","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"","code":"pkg_installation_plan$clone(deep = FALSE)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_plan.html","id":"arguments-3","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for installation from a lock file — new_pkg_installation_plan","text":"deep Whether make deep clone.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":null,"dir":"Reference","previous_headings":"","what":"R6 class for package download and installation. — new_pkg_installation_proposal","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Download install R packages, dependencies, various sources.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"new_pkg_installation_proposal(refs, config = list(), ...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"refs Package names references. See 'Package references' syntax. config Configuration options, named list. See 'Configuration'. include library, .libPaths()[1] added library. ... Additional arguments, passed pkg_installation_proposal$new().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"new_pkg_installation_proposal() returns new pkg_installation_proposal object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"new_pkg_installation_proposal() creates new object pkg_installation_proposal class. advantage new_pkg_installation_proposal() compared using pkg_installation_proposal constructor directly avoids making pkgdepends build time dependency. Typical workflow install set packages: Create pkg_installation_proposal object new_pkg_installation_proposal(). Resolve possible dependencies pkg_installation_proposal$resolve(). Solve package dependencies, get installation plan, pkg_installation_proposal$solve(). Download files pkg_installation_proposal$download(). Install downloaded files pkg_installation_proposal$install().","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"public-methods","dir":"Reference","previous_headings":"","what":"Public methods","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_installation_proposal$new() pkg_installation_proposal$get_refs() pkg_installation_proposal$get_config() pkg_installation_proposal$resolve() pkg_installation_proposal$async_resolve() pkg_installation_proposal$get_resolution() pkg_installation_proposal$get_solve_policy() pkg_installation_proposal$set_solve_policy() pkg_installation_proposal$solve() pkg_installation_proposal$get_solution() pkg_installation_proposal$show_solution() pkg_installation_proposal$get_sysreqs() pkg_installation_proposal$show_sysreqs() pkg_installation_proposal$stop_for_solution_error() pkg_installation_proposal$create_lockfile() pkg_installation_proposal$draw() pkg_installation_proposal$download() pkg_installation_proposal$async_download() pkg_installation_proposal$get_downloads() pkg_installation_proposal$stop_for_download_error() pkg_installation_proposal$install() pkg_installation_proposal$install_sysreqs() pkg_installation_proposal$get_install_plan() pkg_installation_proposal$format() pkg_installation_proposal$print() pkg_installation_proposal$clone()","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-new-","dir":"Reference","previous_headings":"","what":"Method new()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Create new pkg_installation_proposal object. Consider using new_pkg_installation_proposal() instead calling constructor directly. returned object can used look (recursive) dependencies R packages various sources, download install package files.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$new( refs, config = list(), policy = c(\"lazy\", \"upgrade\"), remote_types = NULL )"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments-1","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"refs Package names references. See 'Package references' syntax. config Configuration options, named list. See 'Configuration'. needs include package library install , library. policy Solution policy. See 'dependency solver'. remote_types Custom remote ref types, advanced use, experimental currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-get-refs-","dir":"Reference","previous_headings":"","what":"Method get_refs()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"package refs used create pkg_installation_proposal object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-1","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_refs()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"character vector package refs used create pkg_installation_proposal object.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-get-config-","dir":"Reference","previous_headings":"","what":"Method get_config()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Configuration options pkg_installation_proposal object. See 'Configuration' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-2","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_config()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-1","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Named list. See 'Configuration' configuration options.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-resolve-","dir":"Reference","previous_headings":"","what":"Method resolve()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Resolve dependencies specified package references. usually means downloading metadata CRAN Bioconductor, unless already cached, also GitHub GitHub refs included, either directly indirectly. See 'Dependency resolution' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-3","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-2","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_installation_proposal object, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-async-resolve-","dir":"Reference","previous_headings":"","what":"Method async_resolve()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"resolve(), asynchronous. method advanced use.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-4","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$async_resolve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-3","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"deferred value.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-get-resolution-","dir":"Reference","previous_headings":"","what":"Method get_resolution()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Query result dependency resolution. method can called resolve() completed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-5","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_resolution()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-4","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_resolution_result object, also data frame. See 'Dependency resolution' columns.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-get-solve-policy-","dir":"Reference","previous_headings":"","what":"Method get_solve_policy()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Returns current policy dependency solver. See 'dependency solver' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-6","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_solve_policy()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-5","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"character vector length one.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-set-solve-policy-","dir":"Reference","previous_headings":"","what":"Method set_solve_policy()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Set current policy dependency solver. object already contains solution new policy different old policy, solution deleted. See 'dependency solver' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-7","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$set_solve_policy(policy = c(\"lazy\", \"upgrade\"))"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments-2","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"policy Policy set.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-solve-","dir":"Reference","previous_headings":"","what":"Method solve()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Solve package dependencies. resolved dependencies, works set packages, can installed together create functional installation. set includes directly specified packages, required (suggested, depending configuration) packages well. includes every package . See 'dependency solver' details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-8","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$solve()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-6","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_installation_proposal object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-get-solution-","dir":"Reference","previous_headings":"","what":"Method get_solution()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Returns solution package dependencies.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-9","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_solution()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-7","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_solution_result object, list. See pkg_solution_result details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-show-solution-","dir":"Reference","previous_headings":"","what":"Method show_solution()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Show solution screen.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-10","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$show_solution(key = FALSE)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments-3","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"key Whether show key package list annotation.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-8","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_solution_result object, list. See pkg_solution_result details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-get-sysreqs-","dir":"Reference","previous_headings":"","what":"Method get_sysreqs()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Query categorize system requirements.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-11","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_sysreqs()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-show-sysreqs-","dir":"Reference","previous_headings":"","what":"Method show_sysreqs()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Show system requirements packages solution.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-12","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$show_sysreqs()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-stop-for-solution-error-","dir":"Reference","previous_headings":"","what":"Method stop_for_solution_error()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Error dependency solver failed find consistent set packages can installed together.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-13","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$stop_for_solution_error()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-create-lockfile-","dir":"Reference","previous_headings":"","what":"Method create_lockfile()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Create lock file contains information perform installation later, possibly another R session.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-14","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$create_lockfile(path = \"pkg.lock\", version = 1)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments-4","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"path Name lock file. default pkg.lock current working directory. version version 1 supported currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"details-1","dir":"Reference","previous_headings":"","what":"Details","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Note, since URLs CRAN CRAN-like repositories change time, practice perform plan lock file much later. example, binary packages older package version removed, found. Similarly, url:: remote types, URL might hold updated version package, compared lock file created. happen, pkgdepends prints warning, try continue installation. installation might fail updated package different (e.g. new) dependencies. Currently intended use case lock files CI systems, facilitate caching. (hash ) lock file provides good key caching systems.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-draw-","dir":"Reference","previous_headings":"","what":"Method draw()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Draw tree package dependencies. returns tree object, see cli::tree(). Printing object prints dependency tree screen.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-15","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$draw()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-9","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"tree object cli package, see cli::tree().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-download-","dir":"Reference","previous_headings":"","what":"Method download()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Download packages part solution. uses package cache pkgcache package default, avoid downloads possible.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-16","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$download()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-10","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_installation_proposal object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-async-download-","dir":"Reference","previous_headings":"","what":"Method async_download()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"download(), asynchronous. method advanced use.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-17","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$async_download()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-11","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"deferred value.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-get-downloads-","dir":"Reference","previous_headings":"","what":"Method get_downloads()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Returns summary package downloads.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-18","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_downloads()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-12","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_download_result object, list. See pkg_download_result details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-stop-for-download-error-","dir":"Reference","previous_headings":"","what":"Method stop_for_download_error()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Throw error downloads failed recent pkg_installation_proposal$download() call.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-19","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$stop_for_download_error()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-install-","dir":"Reference","previous_headings":"","what":"Method install()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Install downloaded packages. calls install_package_plan().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-20","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$install()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-13","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"return value install_package_plan().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-install-sysreqs-","dir":"Reference","previous_headings":"","what":"Method install_sysreqs()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Install system requirements. nothing system requirements turned . Create installation plan downloaded packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-21","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$install_sysreqs()"},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-22","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$get_install_plan()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-14","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"installation plan, see 'Installation plans' format.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-format-","dir":"Reference","previous_headings":"","what":"Method format()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Format pkg_installation_proposal object, typically printing.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-23","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$format(...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments-5","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"... used currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-15","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"character vector, element line printout.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-print-","dir":"Reference","previous_headings":"","what":"Method print()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"Prints pkg_installation_proposal object screen. printout includes: package refs. policy dependency solver. Whether object solved dependencies. Whether solution errors. Whether object downloads. Whether downloads errors. Advice methods call next. See example .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-24","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$print(...)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments-6","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"... used currently.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"returns-16","dir":"Reference","previous_headings":"","what":"Returns","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"pkg_installation_proposal object , invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"method-clone-","dir":"Reference","previous_headings":"","what":"Method clone()","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"objects class cloneable method.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"usage-25","dir":"Reference","previous_headings":"","what":"Usage","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"pkg_installation_proposal$clone(deep = FALSE)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"arguments-7","dir":"Reference","previous_headings":"","what":"Arguments","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"deep Whether make deep clone.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_installation_proposal.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"R6 class for package download and installation. — new_pkg_installation_proposal","text":"","code":"if (FALSE) { pdi <- new_pkg_installation_proposal( \"pak\", config = list(library = tempfile()) ) pdi pdi$resolve() pdi pdi$solve() pdi pdi$download() pdi } pdi <- new_pkg_installation_proposal( \"r-lib/pkgdepends\", config = list(library = tempfile())) #> ℹ Creating library directory: /tmp/RtmpGEnyB9/file1a787843a248 pdi #> #> + refs: #> - r-lib/pkgdepends #> + solution policy: lazy #> (use `$solve()` to solve dependencies) pdi <- new_pkg_installation_proposal(\"r-lib/pkgdepends\") pdi$get_refs() #> [1] \"r-lib/pkgdepends\" pdi <- new_pkg_installation_proposal( \"pak\", config = list(library = tempfile()) ) #> ℹ Creating library directory: /tmp/RtmpGEnyB9/file1a7850a5e205 pdi$get_config() #> # pkg config #> ## build_vignettes #> #> [1] FALSE #> #> ## sysreqs_verbose #> #> [1] TRUE #> #> ## sysreqs_db_update #> #> [1] TRUE #> #> ## metadata_cache_dir #> #> [1] \"/tmp/RtmpGEnyB9/file1a784e186b3\" #> #> ## platforms #> #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" \"source\" #> #> ## goal #> #> [1] \"install\" #> #> ## r_versions #> #> [1] \"4.4.0\" #> #> ## cache_dir #> #> [1] \"/tmp/RtmpGEnyB9/file1a78668aa24c\" #> #> ## library #> #> [1] \"/tmp/RtmpGEnyB9/file1a7850a5e205\" #> #> ## metadata_update_after #> #> Time difference of 24 hours #> #> ## include_linkingto #> #> [1] FALSE #> #> ## sysreqs_rspm_repo_id #> #> [1] \"1\" #> #> ## sysreqs_update #> #> [1] TRUE #> #> ## package_cache_dir #> #> NULL #> #> ## sysreqs_rspm_url #> #> [1] \"https://packagemanager.posit.co\" #> #> ## sysreqs_sudo #> #> [1] TRUE #> #> ## sysreqs_db_update_timeout #> #> Time difference of 5 secs #> #> ## sysreqs_lookup_system #> #> [1] TRUE #> #> ## git_submodules #> #> [1] FALSE #> #> ## sysreqs_platform #> #> [1] \"x86_64-pc-linux-gnu-ubuntu-22.04\" #> #> ## dependencies #> #> [1] \"Depends\" \"Imports\" \"LinkingTo\" #> #> ## sysreqs #> #> [1] TRUE #> #> ## sysreqs_dry_run #> #> [1] FALSE #> #> ## windows_archs #> #> [1] \"prefer-x64\" #> #> ## use_bioconductor #> #> [1] TRUE #> #> ## cran_mirror #> #> CRAN #> \"https://cran.rstudio.com\" #> if (FALSE) { pdi <- new_pkg_installation_proposal( \"pak\", config = list(library = tempfile()) ) pdi$resolve() pdi$get_resolution() } if (FALSE) { pdi <- new_pkg_installation_proposal( \"r-lib/pkgdepends\", config = list(library = tempfile()) ) pdi$resolve() pdi$get_resolution() } pdi <- new_pkg_installation_proposal( \"r-lib/pkgdepends\", config = list(library = tempfile()) ) #> ℹ Creating library directory: /tmp/RtmpGEnyB9/file1a786bce5b06 pdi$get_solve_policy() #> [1] \"lazy\" pdi$set_solve_policy(\"upgrade\") pdi$get_solve_policy() #> [1] \"upgrade\" pdi <- new_pkg_installation_proposal( \"r-lib/pkgdepends\", config = list(library = tempfile()) ) #> ℹ Creating library directory: /tmp/RtmpGEnyB9/file1a7836be6306 pdi$get_solve_policy() #> [1] \"lazy\" pdi$set_solve_policy(\"upgrade\") pdi$get_solve_policy() #> [1] \"upgrade\" if (FALSE) { pdi <- new_pkg_installation_proposal( \"r-lib/pkgdepends\", config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$get_solution() } if (FALSE) { pdi <- new_pkg_installation_proposal( \"r-lib/pkgdepends\", config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$get_solution() } if (FALSE) { pdi <- new_pkg_installation_proposal( \"r-lib/pkgdepends\", config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$get_solution() pdi$show_solution() } if (FALSE) { # This is an error, because the packages conflict: pdi <- new_pkg_installation_proposal( c(\"r-lib/pak\", \"cran::pak\"), config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi # This fails: # pdi$stop_for_solution_error() } if (FALSE) { pdi <- new_pkg_installation_proposal( \"pak\", config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$draw() } if (FALSE) { pdi <- new_pkg_installation_proposal( c(\"r-lib/pak\", \"cran::pak\"), config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$download() pdi$get_downloads() } if (FALSE) { pdi <- new_pkg_installation_proposal( c(\"r-lib/pak\", \"cran::pak\"), config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$download() pdi$get_downloads() } if (FALSE) { pdi <- new_pkg_installation_proposal( \"pak\", config = list(library = tempfile()) ) pdi$resolve() pdi$solve() pdi$download() pdi$get_install_plan() } # Method print pdi <- new_pkg_installation_proposal( \"pak\", config = list(library = tempfile()) ) #> ℹ Creating library directory: /tmp/RtmpGEnyB9/file1a78396cd667 pdi #> #> + refs: #> - pak #> + solution policy: lazy #> (use `$solve()` to solve dependencies) pdi$resolve() pdi #> #> + refs: #> - pak #> + solution policy: lazy #> (use `$solve()` to solve dependencies) pdi$solve() pdi #> #> + refs: #> - pak #> + solution policy: lazy #> + has solution #> (use `$download()` to download packages) #> (use `$show_solution()` to see the packages to install #> (use `$get_solution()` to see the full solution results) #> (use `$draw()` to draw the dependency tree) #> (use `$create_lockfile()` to write a lock file) pdi$download() #> ℹ Getting 1 pkg with unknown size #> ✔ Got pak 0.7.2 (x86_64-pc-linux-gnu-ubuntu-22.04) (5.81 MB) pdi #> #> + refs: #> - pak #> + solution policy: lazy #> + has solution #> + has downloads #> (use `$show_solution()` to see the packages to install #> (use `$get_solution()` to see the full solution results) #> (use `$draw()` to draw the dependency tree) #> (use `$create_lockfile()` to write a lock file) #> (use `$get_downloads()` to get download data) #> (use `$get_install_plan()` to get the installation plan) #> (use `$install()` to install the packages)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":null,"dir":"Reference","previous_headings":"","what":"Check if an R package name is available. — pkg_name_check","title":"Check if an R package name is available. — pkg_name_check","text":"Additionally, look candidate name number dictionaries, make sure negative meaning.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check if an R package name is available. — pkg_name_check","text":"","code":"pkg_name_check(name, dictionaries = NULL)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check if an R package name is available. — pkg_name_check","text":"name Package name candidate. dictionaries Character vector, dictionaries query. Available dictionaries: * wikipedia * wiktionary, * sentiment (https://github.com/fnielsen/afinn), * urban (Urban Dictionary). NULL (default), Urban Dictionary omitted, often offensive.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check if an R package name is available. — pkg_name_check","text":"pkg_name_check object custom print method.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"valid-package-name-check","dir":"Reference","previous_headings":"","what":"Valid package name check","title":"Check if an R package name is available. — pkg_name_check","text":"Check validity name package name. See 'Writing R Extensions' allowed package names. Also checked list names known cause problems.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"cran-checks","dir":"Reference","previous_headings":"","what":"CRAN checks","title":"Check if an R package name is available. — pkg_name_check","text":"Check name names past current packages CRAN, including base recommended packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"bioconductor-checks","dir":"Reference","previous_headings":"","what":"Bioconductor checks","title":"Check if an R package name is available. — pkg_name_check","text":"Check name past current Bioconductor packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"profanity-check","dir":"Reference","previous_headings":"","what":"Profanity check","title":"Check if an R package name is available. — pkg_name_check","text":"Check name https://www.purgomalum.com/service/containsprofanity make sure profanity.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"dictionaries","dir":"Reference","previous_headings":"","what":"Dictionaries","title":"Check if an R package name is available. — pkg_name_check","text":"See dictionaries argument.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_name_check.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check if an R package name is available. — pkg_name_check","text":"","code":"pkg_name_check(\"cli\") #> ╔════════════════════════════════════════════════════════════════════════╗ #> ║ –*– cli –*– ║ #> ╚════════════════════════════════════════════════════════════════════════╝ #> ┌────────────────────────────────────────────────────────────────────────┐ #> │ ✔ valid name ✖ CRAN ✔ Bioconductor │ #> │ ✔ not a profanity │ #> └────────────────────────────────────────────────────────────────────────┘ #> ┌ Wikipedia ─────────────────────────────────────────────────────────────┐ #> │ CLI (from Cli) CLI may refer to multiple articles, see link. │ #> └───────────────────────────────────── https://en.wikipedia.org/wiki/CLI ┘ #> ┌ Wiktionary ────────────────────────────────────────────────────────────┐ #> │ cli No English definition found │ #> └──────────────────────────────────── https://en.wiktionary.org/wiki/cli ┘ #> ┌────────────────────────────────────────────────────────────────────────┐ #> │ Sentiment: :| (0) │ #> └────────────────────────────────────────────────────────────────────────┘"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":null,"dir":"Reference","previous_headings":"","what":"Package references — pkg_refs","title":"Package references — pkg_refs","text":"package reference (ref) specifies location R package can obtained . full syntax reference type::ref, type can often omitted, common ref types shortcuts.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"package-references","dir":"Reference","previous_headings":"","what":"Package references","title":"Package references — pkg_refs","text":"Many pkgdepends pak functions take package names arguments. E.g. pak::pkg_install() takes names packages install, pak::pkg_deps_tree() takes names packages draw dependency trees . function can also take generic package reference instead package name. package reference also tells pkgdepends find package, package source. specify package source, use name prefix, :: separator. E.g. cran::mypkg means mypkg package CRAN. package name special package reference, implicitly specifies configured CRAN(-like) repositories package source. (call standard package source.) mypkg equivalent standard::mypkg pak look mypkg configured CRAN-like repositories. explicitly specify CRAN-like repositories (e.g. options(\"repos\")), pak uses CRAN Bioconductor repositories default. list currently supported package sources. discuss detail . cran: CRAN package. bioc: Bioconductor package. standard: package configured CRAN-like repository. github: package GitHub. gitlab: package GitLab. git: package git repository. local: local package file directory. url: URL points package archive. installed installed package. deps dependencies local package file directory. special reference type accepts package source. See . param special reference change references downloaded installed. See \"Parameters\" .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"shorthands","dir":"Reference","previous_headings":"","what":"Shorthands","title":"Package references — pkg_refs","text":"save typing, always need fully specify package source package reference. seen package name implicitly standard package source. complete rules shorthands, order applied: ref valid package name, package name @ version specification, standard package source used. E.g. pkg equivalent standard::pkg pkg@1.0 equivalent standard::pkg@1.0. ref valid github ref type without github:: prefix, github used. E.g. user/repo equivalent github::user/repo user/repo@tag equivalent github::user/repo@tag, etc. ref GitHub URL (see ) without github:: prefix, github used. ref path starts . / \\ ~ local used. (pkgdepends check path exists.) package reference form =?, special param type. See \"Parameters\" . package reference explicit package source, package source determined rules, pkgdepends throws error.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"package-names","dir":"Reference","previous_headings":"","what":"Package names","title":"Package references — pkg_refs","text":"pkgdepends looking dependencies package, needs able determine name dependency package reference. sometimes easy dependencies Remotes (similar) fields. github:: gitlab:: dependencies pkgdepends assumes package name name repository. hold, need specify package name explicitly, using = prefix. E.g. pins=rstudio/pins-r. specify package source type package name, package name comes first: pins=github::rstudio/pins-r. git:: dependencies, pkgdepends assumes package name last component repository. hold, need specify package name explicitly, using = prefix. E.g. pins=git::https://github.com/rstudio/pins-r. local:: dependencies, always need specify package name explicitly. E.g. pins=local::~/works/pins. url:: dependencies, always need specify package name explicitly. E.g. ggplot2=url::https://cloud.r-project.org/src/contrib/....","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"parameters","dir":"Reference","previous_headings":"","what":"Parameters","title":"Package references — pkg_refs","text":"Package references may optional parameters, added question mark. Different parameters separated ampersand (&) character. (similar HTTP URLs take query parameters.) Parameters may flags turn behavior, can string value, assigned equal sign (=). value assigned, assume true value. example two package refs equivalent:","code":"cran::testthat?source&nocache cran::testthat?source=true&nocache=true"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"parameters-for-downstream-packages","dir":"Reference","previous_headings":"","what":"Parameters for downstream packages","title":"Package references — pkg_refs","text":"pkgdepends allows specifying parameters downstream packages, using =? special package reference, package name package, parameters, . useful want add parameter downstream dependency. example, install ggplot2, always reinstall cli package dependency use ggplot2 cli=?reinstall package references. latter tells pkgdepends always reinstall cli, even already installed.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"currently-supported-parameters","dir":"Reference","previous_headings":"","what":"Currently supported parameters","title":"Package references — pkg_refs","text":"ignore flag parameter. specified, package ignored. usually makes sense packagename=?ignore form, ignore downstream soft dependency. versions hard dependency ignored lead solution error. ignore--r version number parameter. package ignored R versions older specified one. E.g. Matrix=?ignore--r=4.1.2 ignore Matrix package R versions older 4.1.2. parameter really makes sense packgename=?ignore form. ignore-unavailable flag. can specified soft dependencies. specified package available, ignored. parameter really makes sense packagename=?ignore-unavailable form. source flag parameter. specified, source R package requested CRAN-like repository. package installations source always triggers re-install. words, source implies reinstall parameter. parameter supported bioc::, cran:: standard:: remote types, ignored others. reinstall requests re-install package installations. supported bioc::, cran::, git::, github::, gitlab::, local::, standard::, url:: remote types. nocache ignore package cache. always download package file, add downloaded (built) package(s) package cache. supported bioc::, cran::, git::, github::, gitlab::, standard:: url:: remote types.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"cran-packages-cran-","dir":"Reference","previous_headings":"","what":"CRAN packages (cran::)","title":"Package references — pkg_refs","text":"package CRAN. Full syntax: valid package name. version version requirement. Examples: Note: pkgdepends currently parses version specification part (everything @), use .","code":"[cran::][@[>=] | @current | @last] forecast forecast@8.8 forecast@>=8.8 cran::forecast forecast@last forecast@current"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"bioconductor-packages-bioc-","dir":"Reference","previous_headings":"","what":"Bioconductor packages (bioc::)","title":"Package references — pkg_refs","text":"package Bioconductor. syntax CRAN packages, except prefix.","code":"[bioc::][@[>=] | @current | @last]"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"standard-packages-standard-","dir":"Reference","previous_headings":"","what":"Standard packages (standard::)","title":"Package references — pkg_refs","text":"packages either CRAN Bioconductor, full syntax CRAN packages, except prefix:","code":"[standard::][@[>=] | current | last]"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"github-packages-github-","dir":"Reference","previous_headings":"","what":"GitHub packages (github::)","title":"Package references — pkg_refs","text":"Packages GitHub repository. Full syntax: name package. missing, name repository used. GitHub username organization name. name repository. optional subdirectory, package within subdirectory repository. specifies certain version package, see . may specify: git branch, tag (prefix ) commit hash: @; pull request: #; latest release: @*release. missing, latest commit default branch used. Examples: convenience GitHub HTTP URLs can also used specify package GitHub. Examples: GitHub remote string can also used instead URL, example: git@github.com:r-lib/pak.git","code":"[=][github::]/[/][] r-lib/crayon github::r-lib/crayon r-lib/crayon@84be6207 r-lib/crayon@branch r-lib/crayon#41 r-lib/crayon@release https://github.com/r-lib/withr # A branch: https://github.com/r-lib/withr/tree/ghactions # A tag: https://github.com/r-lib/withr/tree/v2.1.1 # A commit: https://github.com/r-lib/withr/commit/8fbcb548e316 # A pull request: https://github.com/r-lib/withr/pull/76 # A release: https://github.com/r-lib/withr/releases/tag/v2.1.0"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"gitlab-packages-gitlab-","dir":"Reference","previous_headings":"","what":"GitLab packages (gitlab::)","title":"Package references — pkg_refs","text":"Packages GitLab repository. Full syntax: name package. missing, name repository used. typically GitLab username group name, may contain subgroups. name repository, project GitLab terminology. optional subdirectory, package within subdirectory repository. Note GitLab, must come /- prefix, able distinguish subgroups. may specify git branch, tag (prefix ) commit hash. missing, latest commit default branch used. gitlab:: supports git submodules, see git-submodules configuration entry. Examples:","code":"[=][github::]/[/-/][] gitlab::gaborcsardi/cli gitlab::r-hub/filelock@main gitlab::group/subgroup/subsubgroup/project/-/subdir@ref"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"packages-in-git-repositories-git-","dir":"Reference","previous_headings":"","what":"Packages in git repositories (git::)","title":"Package references — pkg_refs","text":"Full syntax: name package. missing, last component used. host name path git repository. git repositories need .git suffix , others forgiving. specifies certain version package: git branch, tag (prefix ) commit hash: @. missing, latest commit default branch used. git:: supports git submodules, see git-submodules configuration entry. Examples: Note pkgdepends built-git client, require system git installation. system git installed, pkgdepends use credentials stored configured git credential store, automatically, via gitcreds package.","code":"[=]git::https?://[] git::https://github.com/r-lib/crayon git::https://github.com/r-lib/crayon.git git::https://github.com/r-lib/crayon.git@84be6207 git::https://github.com/r-lib/crayon.git@branch git::https://gitlab.com/gaborcsardi/cli.git"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"local-packages-local-","dir":"Reference","previous_headings":"","what":"Local packages (local::)","title":"Package references — pkg_refs","text":"path refers package file built R CMD build, directory contains package. Full syntax: brevity, can omit local:: prefix, specify absolute path, path user's home directory, starting ~, relative path starting ./ .\\\\. single dot (\".\") considered local package current working directory. Examples: specify local package dependency (.e. DESCRIPTION), also need specify name package, see \"Package names\" .","code":"local:: local::/foo/bar/package_1.0.0.tar.gz local::/foo/bar/pkg local::. /absolute/path/package_1.0.0.tar.gz ~/path/from/home ./relative/path ."},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"urls-url-","dir":"Reference","previous_headings":"","what":"URLs (url::)","title":"Package references — pkg_refs","text":"can use url:: refer URLs hold R package archives (.e. properly built R CMD build), compressed directories package trees (.e. built R CMD build). pkgdepends figure needs run R CMD build package first. remote type supports .tar.gz .zip files. Note URLs ideal remote types, pkgdepends needs download package file resolve dependencies. happens, puts package file cache, downloads needed installing package later. Examples: specify package URL dependency (.e. DESCRIPTION), also need specify name package, see \"Package names\" .","code":"url::https://cloud.r-project.org/src/contrib/Archive/cli/cli_1.0.0.tar.gz url::https://github.com/tidyverse/stringr/archive/HEAD.zip"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"installed-packages-installed-","dir":"Reference","previous_headings":"","what":"Installed packages (installed::)","title":"Package references — pkg_refs","text":"usually used internally, can also used directly. Full syntax: library package installed . package name. Example:","code":"installed::/ installed::~/R/3.6/crayon"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"package-dependencies-deps-","dir":"Reference","previous_headings":"","what":"Package dependencies (deps::)","title":"Package references — pkg_refs","text":"Usually used internally, specifies dependencies local package. can used download install dependencies package, without downloading installing package . Full syntax: Examples:","code":"deps:: deps::/foo/bar/package_1.0.0.tar.gz deps::/foo/bar/pkg deps::."},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"any-packages","dir":"Reference","previous_headings":"","what":"any:: packages","title":"Package references — pkg_refs","text":"Sometimes need install additional packages, mind installed . example. want install cli GitHub, r-lib/cli. also want install glue, mind version glue installed, long compatible requested cli version. cli specifies development version glue, fine. cli fine CRAN version glue, OK, . future version cli depend glue, still want glue installed, CRAN. :: reference type exactly . example might write first, fail rlib/cli requests (say) tidyverse/glue, pkg_install() \"glue\" interpreted \"standard::glue\", creating conflict tidyverse/glue. hand works, independently glue version requested cli.","code":"pak::pkg_install(c(\"glue\", \"r-lib/cli\")) pak::pkg_install(c(\"any::glue\", \"r-lib/cli\"))"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"parameter-refs-param-","dir":"Reference","previous_headings":"","what":"Parameter refs (param::)","title":"Package references — pkg_refs","text":"See \"Parameters\" .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_refs.html","id":"the-remotes-field","dir":"Reference","previous_headings":"","what":"The Remotes field","title":"Package references — pkg_refs","text":"DESCRIPTION file R package can mark regular dependency defined Depends, Imports, Suggests Enhances fields installed non-standard package source adding package reference Remotes entry. pkgdepends download install package specified location, instead CRAN-like repository. remote dependencies specified Remotes comma separated list package sources: Note still need add package one regular dependency fields, .e. Imports, Suggests, etc. concrete example specifies r-lib/glue package: CRAN Bioconductor repositories support Remotes field, need remove field, submitting package either .","code":"Remotes: , , [ ... ] Imports: glue Remotes: r-lib/glue, r-lib/httr@v0.4, klutometis/roxygen#142, r-lib/testthat@c67018fa4970"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":null,"dir":"Reference","previous_headings":"","what":"Dependency resolution — pkg_resolution","title":"Dependency resolution — pkg_resolution","text":"Collect information dependencies R packages, recursively.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Dependency resolution — pkg_resolution","text":"pkg_deps, pkg_download_proposal pkg_installation_proposal resolve dependencies recursively, obtain information packages needed specified package references.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"cran-and-bioconductor-packages","dir":"Reference","previous_headings":"","what":"CRAN and Bioconductor packages","title":"Dependency resolution — pkg_resolution","text":"Resolution currently start downloading CRAN Bioconductor metadata, date. CRAN, also download additional metadata, includes file sizes, SHA hashes, system requirements, \"built\" (binary packages) \"packaged\" time stamps. extra meta information updated daily currently, packages might incorrect missing.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"github-packages","dir":"Reference","previous_headings":"","what":"GitHub packages","title":"Dependency resolution — pkg_resolution","text":"GitHub packages, query download URL able download package later, also download DESCRIPTION file, learn dependencies.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"local-packages","dir":"Reference","previous_headings":"","what":"Local packages","title":"Dependency resolution — pkg_resolution","text":"local package files extract DESCRIPTION file, learn dependencies.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"the-remotes-field-in-description","dir":"Reference","previous_headings":"","what":"The remotes field in DESCRIPTION","title":"Dependency resolution — pkg_resolution","text":"support non-standard Remotes field package DESCRIPTION file. field may contain list package references dependencies specified one Depends, Includes, Suggests Enhances fields. syntax comma separated list package references.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"the-result","dir":"Reference","previous_headings":"","what":"The result","title":"Dependency resolution — pkg_resolution","text":"result resolution data frame information packages dependencies. built: Built field DESCRIPTION file binary packages, information available. cache_status: whether package file package cache. NA installed:: package refs. dep_types: character vector dependency types considered package. (list column.) deps: dependencies package, data frame. See \"Package dependency tables\" . direct: whether package (ref, really) directly specified, added dependency. error: list column contains error objects refs pkgdepends failed resolve. filesize: file size bytes, NA information available. license: license package, NA available. md5sum: MD5 checksum package file, available, NA . metadata: named character vector. fields () added installed DESCRIPTION file package. mirror: URL CRAN(-like) mirror site metadata obtained . NA non-CRAN-like sources, e.g. local files, installed packages, GitHub, etc. needscompilation: whether package needs compilation. package: package name. priority: \"base\" base packages, \"recommended\" recommended packages, NA otherwise. ref: package reference. remote: parsed remote_ref objects, see parse_pkg_refs(). list column. repodir: directory package CRAN-like repository. sha256: SHA256 hash package file, available, otherwise NA. sources: URLs package can downloaded . necessarily URL can download HTTP client. E.g. local:: refs path, git:: refs URL git. zero length vector installed:: refs. status: status dependency resolution, \"OK\" \"FAILED\". target: path package saved CRAN-repository. type: ref type. version: package version. Additional columns might present. either used internally experimental. might removed changed time. columns type character, except direct (logical), needscompilation (logical), filesize (integer), deps (list column, see \"Package dependency tables\" ), sources (list character vectors), remote (list), error (list), metadata (list), dep_types (list).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"package-dependency-tables","dir":"Reference","previous_headings":"","what":"Package dependency tables","title":"Dependency resolution — pkg_resolution","text":"package dependency tables deps list column five columns currently: ref: package ref dependency. type: dependency type, lowercase. .e. imports, suggests, etc. package: package name dependency. op: operator version requirements, e.g. >=. version: version number, version requirements.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_resolution.html","id":"resolution-failures","dir":"Reference","previous_headings":"","what":"Resolution failures","title":"Dependency resolution — pkg_resolution","text":"resolution process stop error. Instead, failed resolutions return error object error column result data frame.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_rx.html","id":null,"dir":"Reference","previous_headings":"","what":"A set of handy regular expressions related to R packages — pkg_rx","title":"A set of handy regular expressions related to R packages — pkg_rx","text":"use R, make sure specify perl = TRUE, see base::grep().","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_rx.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"A set of handy regular expressions related to R packages — pkg_rx","text":"","code":"pkg_rx()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_rx.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"A set of handy regular expressions related to R packages — pkg_rx","text":"named list strings.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_rx.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"A set of handy regular expressions related to R packages — pkg_rx","text":"Currently included: pkg_name: valid package name. type_cran: cran:: package reference. type_bioc: bioc:: package reference. type_standard: standard:: package reference. type_github: github:: package reference. type_git: git:: package reference. type_local: local:: package reference. type_deps: deps:: package reference. type_installed: installed:: package reference. github_username: GitHub username. github_repo: GitHub repository name. github_url: GitHub URL.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_rx.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"A set of handy regular expressions related to R packages — pkg_rx","text":"","code":"pkg_rx() #> $pkg_name #> [1] \"[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9]\" #> #> $type_cran #> [1] \"^(?:cran::)?(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])(?:@(?:(?:(?>=)?(?[0-9]+[-\\\\.][0-9]+(?:[-\\\\.][0-9]+)*|current|last))))?$\" #> #> $type_bioc #> [1] \"^(?:bioc::)?(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])(?:@(?:(?:(?>=)?(?[0-9]+[-\\\\.][0-9]+(?:[-\\\\.][0-9]+)*|current|last))))?$\" #> #> $type_standard #> [1] \"^(?:standard::)?(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])(?:@(?:(?:(?>=)?(?[0-9]+[-\\\\.][0-9]+(?:[-\\\\.][0-9]+)*|current|last))))?$\" #> #> $type_github #> [1] \"^(?:(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])=)?(?:github::)?(?(?:[a-zA-Z\\\\d](?:[a-zA-Z\\\\d-]){0,38}))/(?[^/@#]+)(?:/(?(?:[^@#]*[^@#/])/?))?(?:(?:(?:@(?[^*].*)))|(?:(?:#(?[0-9]+)))|(?:(?:@(?[*]release))))?$\" #> #> $type_git #> [1] \"^(?:(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])=)?(?:git::)(?:(?[^/]*)://)?(?[^/]+)(?[^@]*/)(?[^/@]*)(?:@(?.*))?\" #> #> $type_local #> [1] \"^(?:(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])=)?(?|local::(?.*)|(?(?:/|\\\\\\\\|~|[.]/|[.]\\\\\\\\|[.]$).*))$\" #> #> $type_deps #> [1] \"^(?:deps::)(?.*)$\" #> #> $type_installed #> [1] \"^(?:installed::)?(?.*)/(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])$\" #> #> $github_username #> [1] \"(?(?:[a-zA-Z\\\\d](?:[a-zA-Z\\\\d-]){0,38}))\" #> #> $github_repo #> [1] \"(?[^/@#]+)\" #> #> $github_url #> [1] \"^(?:(?[a-zA-Z][a-zA-Z0-9.]*[a-zA-Z0-9])=)?(?:github::)?(?:(?:https?://)|(?:(?:ssh://|[^@]+@)))(?:[^/:]+)[/:](?(?:[a-zA-Z\\\\d](?:[a-zA-Z\\\\d-]){0,38}))/(?[^/@#]+?)(?)(?:[.]git)?(?:/(?:(?:(?:tree|commit|releases/tag)/(?.+$))|(?:pull/(?.+$))|(?:releases/)(?.+$)))?$\" #>"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_solution.html","id":null,"dir":"Reference","previous_headings":"","what":"The dependency solver — pkg_solution","title":"The dependency solver — pkg_solution","text":"dependency solver takes resolution information, works exact versions package must installed, version requirements satisfied.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_solution.html","id":"solution-policies","dir":"Reference","previous_headings":"","what":"Solution policies","title":"The dependency solver — pkg_solution","text":"dependency solver currently supports two policies: lazy upgrade. lazy policy prefers minimize installation time, perform package upgrades, unless version requirements require . upgrade policy prefers update package latest possible versions, still considers version requirements.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_solution.html","id":"the-integer-problem","dir":"Reference","previous_headings":"","what":"The integer problem","title":"The dependency solver — pkg_solution","text":"Solving package dependencies requires solving integer linear problem (ILP). subsection briefly describes problem represented integer problem, solution policies exactly mean. Every row package resolution candidate dependency solver. integer problem, every candidate corresponds binary variable. 1 candidate selected part solution, 0 otherwise. objective ILP minimization defined differently different solution policies. ILP conditions . lazy policy, installed:: packaged get 0 points, binary packages 1 point, sources packages 5 points. 'upgrade' policy, rank candidates given package according version numbers, assign points older versions. Points assigned 100 candidates equal versions get equal points. still prefer installed packages binaries source packages, also add 0 point already installed candidates, 1 extra points binaries 5 points source packages. directly specified refs, aim install package exactly . require variables corresponding package sum 1. non-direct refs (.e. dependencies), require variables corresponding package sum one. Since every candidate least 1 point objective function minimization problem, non-needed dependencies omitted. direct refs, require candidates satisfy references. means exactly depends ref types. E.g. CRAN packages, means CRAN candidate must selected. standard ref, GitHub candidate OK well. rule candidates dependency resolution failed. go dependency requirements rule packages meet . every package , requires package B, select B(, =1..k) candidates B satisfy 's requirements add - B(1) - ... - B(k) <= 0 rule. satisfy rule, either install , installed, one good B candidates must installed well. rule non-installed CRAN Bioconductor candidates packages already installed candidate exact version. also rule source CRAN Bioconductor candidates packages binary candidate exact version.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_solution.html","id":"explaining-why-the-solver-failed","dir":"Reference","previous_headings":"","what":"Explaining why the solver failed","title":"The dependency solver — pkg_solution","text":"able explain solution attempt failed, also add dummy variable directly required package. dummy variable large objective value, selected way install directly required package. failed solution, look dummy variables selected, see directly required package failed solve. check rule(s) ruled installation packages, dependencies, recursively.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkg_solution.html","id":"the-result","dir":"Reference","previous_headings":"","what":"The result","title":"The dependency solver — pkg_solution","text":"result solution pkg_solution_result object. named list entries: status: Status solution attempt, \"OK\" \"FAILED\". data: selected candidates. similar pkg_resolution_result object, two extra columns: lib_status: status package library, installation. Possible values: new (newly installed), current (date, installed), update (updated), -update (update, ). old_version: old (current) version package library, NA package currently installed. problem: ILP problem. exact representation implementation detail, informative print method. solution: return value internal solver.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":null,"dir":"Reference","previous_headings":"","what":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"pkgdepends toolkit package dependencies, downloads installations, used packages. looking package manager, see pak.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"features","dir":"Reference","previous_headings":"","what":"Features","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"Look package dependencies recursively. Visualize package dependencies. Download packages dependencies. Install downloaded packages. Includes dependency solver find consistent set dependencies. Supports CRAN Bioconductor packages automatically. Supports packages GitHub GitLab. Supports packages git repositories. Supports package bundles files web. Supports local package file trees. Supports Remotes entry DESCRIPTION file. Caches metadata downloaded packages via pkgcache Performs downloads HTTP queries concurrently. Builds installs packages parallel.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"install","dir":"Reference","previous_headings":"","what":"Install","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"Install package : need development version, install ","code":"install.packages(\"pkgdepends\") pak::pak(\"r-lib/pkgdepends\")"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"usage","dir":"Reference","previous_headings":"","what":"Usage","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"","code":"library(pkgdepends)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"package-references","dir":"Reference","previous_headings":"","what":"Package references","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"package reference (ref) specifies location R package can obtained . Examples: See “Package references” details.","code":"devtools cran::devtools bioc::Biobase r-lib/pkgdepends https://github.com/r-lib/pkgdepends local::~/works/shiny"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"package-dependencies","dir":"Reference","previous_headings":"","what":"Package dependencies","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"Dependencies development version cli package: See pkg_deps class details.","code":"pd <- new_pkg_deps(\"r-lib/pkgcache\") pd$solve() pd$draw() ## ✔ Loading metadata database ... done ## r-lib/pkgcache 2.1.0.9000 ✨👷🏽🔧 ## ├─callr 3.7.3 ✨ ⬇ (431.00 kB) ## │ ├─processx 3.8.1 ✨ ⬇ (316.20 kB) ## │ │ ├─ps 1.7.5 ✨ ⬇ (313.92 kB) ## │ │ └─R6 2.5.1 ✨ ## │ └─R6 ## ├─cli 3.6.1 ✨ ⬇ (1.38 MB) ## ├─curl 5.0.0 ✨ ⬇ (777.64 kB) ## ├─filelock 1.0.2 ✨ ⬇ (29.58 kB) ## ├─jsonlite 1.8.4 ✨ ⬇ (1.13 MB) ## ├─prettyunits 1.1.1 ✨ ⬇ (35.23 kB) ## ├─processx ## ├─R6 ## └─rappdirs 0.3.3 ✨ ⬇ (47.50 kB) ## ## Key: ✨ new | ⬇ download | 👷🏽 build | 🔧 compile"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"package-downloads","dir":"Reference","previous_headings":"","what":"Package downloads","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"Downloading dependencies package: See pkg_download_proposal class details.","code":"pdl <- new_pkg_download_proposal(\"r-lib/cli\") pdl$resolve() pdl$download() ## ℹ No downloads are needed, 1 pkg is cached ##"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"package-installation","dir":"Reference","previous_headings":"","what":"Package installation","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"Installing updating set package:","code":"lib <- tempfile() dir.create(lib) pdi <- new_pkg_installation_proposal( \"r-lib/cli\", config = list(library = lib) ) pdi$solve() pdi$download() pdi$install() ## ℹ No downloads are needed, 1 pkg is cached ## ✔ Installed cli 3.6.1.9000 (github::r-lib/cli@c37f34b) (36ms) ## ✔ Summary: ✨ 1 new in 36ms"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"dependency-resolution","dir":"Reference","previous_headings":"","what":"Dependency resolution","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"pkg_deps, pkg_download_proposal pkg_installation_proposal resolve dependencies recursively, obtain information packages needed specified package references. See “Dependency resolution” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"the-dependency-solver","dir":"Reference","previous_headings":"","what":"The dependency solver","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"dependency solver takes resolution information, works exact versions package must installed, version requirements satisfied. See “dependency solver” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"installation-plans","dir":"Reference","previous_headings":"","what":"Installation plans","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"pkg_installation_proposal can create installation plans, also install . also possible import installation plans created tools. See “Installation plans” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"configuration","dir":"Reference","previous_headings":"","what":"Configuration","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"details pkg_deps, pkg_download_proposal pkg_installation_proposal can tuned list configuration options. See “Configuration” details.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"related","dir":"Reference","previous_headings":"","what":"Related","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"pak – R package manager pkgcache – Metadata package cache devtools – Tools R package developers","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"code-of-conduct","dir":"Reference","previous_headings":"","what":"Code of Conduct","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"Please note pkgdepends project released Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"license","dir":"Reference","previous_headings":"","what":"License","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"MIT (c) RStudio","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/pkgdepends-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"pkgdepends: Package Dependency Resolution and Downloads — pkgdepends-package","text":"Maintainer: Gábor Csárdi csardi.gabor@gmail.com contributors: Posit Software, PBC [copyright holder, funder]","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_check_installed.html","id":null,"dir":"Reference","previous_headings":"","what":"Check if installed packages have all their system requirements — sysreqs_check_installed","title":"Check if installed packages have all their system requirements — sysreqs_check_installed","text":"sysreqs_check_installed() checks system requirements packages (subset packages) installed. sysreqs_fix_installed() installs missing system packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_check_installed.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check if installed packages have all their system requirements — sysreqs_check_installed","text":"","code":"sysreqs_check_installed(packages = NULL, library = .libPaths()[1]) sysreqs_fix_installed(packages = NULL, library = .libPaths()[1])"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_check_installed.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check if installed packages have all their system requirements — sysreqs_check_installed","text":"packages NULL, packages checked. package packages installed, pkgdepends throws warning. library Library libraries check.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_check_installed.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check if installed packages have all their system requirements — sysreqs_check_installed","text":"Data frame custom print format method, pkg_sysreqs_check_result class. columns : system_package: string, name required system package. installed: logical, whether system package correctly installed. packages: list column character vectors. names installed R packages need system package. pre_install: list column character vectors. Commands run installation system package. post_install: list column character vectors. Commands run installation system package. data frame also two attributes additional data: sysreqs_records: raw system requirements records, system_packages: list installed system packages. sysreqs_fix_packages() returns value, invisibly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_check_installed.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Check if installed packages have all their system requirements — sysreqs_check_installed","text":"functions use sysreqs_platform configuration option, see man_config_link(\"Configuration\"). Set pkgdepends detect platform correctly.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_check_installed.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check if installed packages have all their system requirements — sysreqs_check_installed","text":"","code":"# This only works on supported platforms sysreqs_check_installed() #> system package installed required by #> -------------- -- ----------- #> gsfonts ✔ magick #> imagemagick ✔ magick #> libcurl4-openssl-dev ✔ curl #> libfontconfig1-dev ✔ systemfonts #> libfreetype6-dev ✔ ragg, systemfonts, textshaping #> libfribidi-dev ✔ textshaping #> libharfbuzz-dev ✔ textshaping #> libjpeg-dev ✔ ragg #> libmagick++-dev ✔ magick #> libnode-dev ✔ V8 #> libpng-dev ✔ ragg, svglite #> libssl-dev ✔ curl, openssl #> libtiff-dev ✔ ragg #> libxml2-dev ✔ xml2 #> make ✔ fs, sass #> pandoc ✔ knitr, pkgdown, rmarkdown"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_list.html","id":null,"dir":"Reference","previous_headings":"","what":"List contents of the system requirements DB, for a platform — sysreqs_db_list","title":"List contents of the system requirements DB, for a platform — sysreqs_db_list","text":"also tries update system dependency database, outdated. (.e. older allowed metadata_update_after man_config_link(\"configuration option\").","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_list.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"List contents of the system requirements DB, for a platform — sysreqs_db_list","text":"","code":"sysreqs_db_list(sysreqs_platform = NULL)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_list.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"List contents of the system requirements DB, for a platform — sysreqs_db_list","text":"sysreqs_platform System requirements platform. NULL, sysreqs_platform man_config_link(\"configuration option\") used, defaults current platform. Set option .packageName detect platform correctly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_list.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"List contents of the system requirements DB, for a platform — sysreqs_db_list","text":"Data frame columns: name: cross platform system dependency name database. patterns: one regular expressions match SystemRequirements fields. packages: one system package names install. pre_install: command(s) run installing packages. post_install:: command(s) run installing packages.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_list.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"List contents of the system requirements DB, for a platform — sysreqs_db_list","text":"","code":"sysreqs_db_list(sysreqs_platform = \"ubuntu-22.04\") #> # A data frame: 116 × 5 #> name patterns packages pre_install post_install #> #> 1 QuantLib #> 2 apparmor #> 3 atk #> 4 automake #> 5 berkeleydb #> 6 blender #> 7 boost #> 8 bowtie2 #> 9 bwidget #> 10 cairo #> # ℹ 106 more rows"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_match.html","id":null,"dir":"Reference","previous_headings":"","what":"Match system requirement descriptions to the database — sysreqs_db_match","title":"Match system requirement descriptions to the database — sysreqs_db_match","text":"usual workflow pkgdepends matches SystemRequirements fields DESCRIPTION files database.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_match.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Match system requirement descriptions to the database — sysreqs_db_match","text":"","code":"sysreqs_db_match(specs, sysreqs_platform = NULL)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_match.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Match system requirement descriptions to the database — sysreqs_db_match","text":"specs Character vector system requirements descriptions. sysreqs_platform System requirements platform. NULL, sysreqs_platform man_config_link(\"configuration option\") used, defaults current platform. Set option .packageName detect platform correctly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_match.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Match system requirement descriptions to the database — sysreqs_db_match","text":"Data frame columns: spec: input specs. sysreq: name system library tool. packages: system packages, list column character vectors. Rarely can empty string, e.g. pre_install script performs installation. pre_install: list column character vectors. Shell script(s) run installation. post_install: list column character vectors. Shell script(s) run installation.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_match.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Match system requirement descriptions to the database — sysreqs_db_match","text":"sysreqs_db_match() function lets match string, mainly useful debugging.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_match.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Match system requirement descriptions to the database — sysreqs_db_match","text":"","code":"sysreqs_db_match( c(\"Needs libcurl\", \"Java, libssl\"), sysreqs_platform = \"ubuntu-22.04\" ) #> [[1]] #> # A data frame: 1 × 5 #> spec sysreq packages pre_install post_install #> #> 1 Needs libcurl libcurl #> #> [[2]] #> # A data frame: 1 × 5 #> spec sysreq packages pre_install post_install #> #> 1 Java, libssl java #>"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_update.html","id":null,"dir":"Reference","previous_headings":"","what":"Update the cached copy of the system requirements database — sysreqs_db_update","title":"Update the cached copy of the system requirements database — sysreqs_db_update","text":"Update cached copy system requirements database","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_update.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Update the cached copy of the system requirements database — sysreqs_db_update","text":"","code":"sysreqs_db_update()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_db_update.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Update the cached copy of the system requirements database — sysreqs_db_update","text":"cached copy recent, update attempted. See metadata_update_after man_config_link(\"configuration option\").","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_install_plan.html","id":null,"dir":"Reference","previous_headings":"","what":"Create an installation plan for system requirements — sysreqs_install_plan","title":"Create an installation plan for system requirements — sysreqs_install_plan","text":"function uses new_pkg_installation_proposal() methods create installation plan one packages, print system requirements.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_install_plan.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create an installation plan for system requirements — sysreqs_install_plan","text":"","code":"sysreqs_install_plan(refs, upgrade = TRUE, config = list())"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_install_plan.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create an installation plan for system requirements — sysreqs_install_plan","text":"refs Packages install. upgrade TRUE, pkgdepends choose latest available versions packages, instead preferring binary packages source packages. config Configuration options. See 'Configuration'. include library, temporary library used, equivalent assuming preinstalled packages. Pass sysreqs_platform want different platform one R running .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_install_plan.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create an installation plan for system requirements — sysreqs_install_plan","text":"List entries: os: character string. Operating system. distribution: character string. Linux distribution, NA OS Linux. version: character string. Distribution version, NA OS Linux. pre_install: character vector. Commands run installation system packages. install_scripts: character vector. Commands run install system packages. post_install: character vector. Commands run installation system packages. packages: data frame. Information system packages needed. columns: sysreq: string, cross-platform name system requirement. packages: list column character vectors. names R packages system requirement. pre_install: list column character vectors. Commands run package installation system requirement. system_packages: list column character vectors. Names system packages install. post_install: list column character vectors. Commands run package installation system requirement.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_install_plan.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create an installation plan for system requirements — sysreqs_install_plan","text":"","code":"sysreqs_install_plan( \"tidyverse\", config = list(sysreqs_platform = \"ubuntu-22.04\") ) #> $os #> [1] \"linux\" #> #> $distribution #> [1] \"ubuntu\" #> #> $version #> [1] \"22.04\" #> #> $pre_install #> [1] \"apt-get -y update\" #> #> $install_scripts #> [1] \"apt-get -y install libcurl4-openssl-dev libssl-dev make zlib1g-dev libfreetype6-dev libjpeg-dev libpng-dev libtiff-dev pandoc libicu-dev libfontconfig1-dev libfribidi-dev libharfbuzz-dev libxml2-dev\" #> #> $post_install #> character(0) #> #> $packages #> # A data frame: 14 × 5 #> sysreq packages pre_install system_packages post_install #> #> 1 fontconfig #> 2 freetype #> 3 fribidi #> 4 gnumake #> 5 harfbuzz #> 6 libcurl #> 7 libicu #> 8 libjpeg #> 9 libpng #> 10 libtiff #> 11 libxml2 #> 12 openssl #> 13 pandoc #> 14 zlib #>"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_is_supported.html","id":null,"dir":"Reference","previous_headings":"","what":"Check if a platform has system requirements support — sysreqs_is_supported","title":"Check if a platform has system requirements support — sysreqs_is_supported","text":"Check platform system requirements support","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_is_supported.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check if a platform has system requirements support — sysreqs_is_supported","text":"","code":"sysreqs_is_supported(sysreqs_platform = NULL)"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_is_supported.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check if a platform has system requirements support — sysreqs_is_supported","text":"sysreqs_platform System requirements platform. NULL, sysreqs_platform man_config_link(\"configuration option\") used, defaults current platform. Set option .packageName detect platform correctly.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_is_supported.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check if a platform has system requirements support — sysreqs_is_supported","text":"Logical scalar.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_is_supported.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check if a platform has system requirements support — sysreqs_is_supported","text":"","code":"sysreqs_is_supported() #> [1] TRUE"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_list_system_packages.html","id":null,"dir":"Reference","previous_headings":"","what":"List installed system packages — sysreqs_list_system_packages","title":"List installed system packages — sysreqs_list_system_packages","text":"List installed system packages","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_list_system_packages.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"List installed system packages — sysreqs_list_system_packages","text":"","code":"sysreqs_list_system_packages()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_list_system_packages.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"List installed system packages — sysreqs_list_system_packages","text":"Data frame columns: status. two three characters, notation dpkg Debian based systems. \"ii\" means package correctly installed. RPM based systems always \"ii\" currently. package: name system package. version: installed version system package. capabilities: list column character vectors, capabilities provided package.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_list_system_packages.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"List installed system packages — sysreqs_list_system_packages","text":"function uses sysreqs_platform configuration option, see man_config_link(\"Configuration\"). Set pkgdepends detect platform correctly.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_list_system_packages.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"List installed system packages — sysreqs_list_system_packages","text":"","code":"sysreqs_list_system_packages()[1:10,] #> # A data frame: 10 × 4 #> status package version provides #> * #> 1 ii acl 2.3.1-1 #> 2 ii adduser 3.118ubuntu5 #> 3 ii adoptium-ca-certificates 1.0.3-1 #> 4 ii adwaita-icon-theme 41.0-1ubuntu1 #> 5 ii alsa-topology-conf 1.2.5.1-2 #> 6 ii alsa-ucm-conf 1.2.6.3-1ubuntu1.11 #> 7 ii ant 1.10.12-1 #> 8 ii ant-optional 1.10.12-1 #> 9 ii apache2 2.4.52-1ubuntu4.9 #> 10 ii apache2-bin 2.4.52-1ubuntu4.9 "},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_platforms.html","id":null,"dir":"Reference","previous_headings":"","what":"List platforms with system requirements support — sysreqs_platforms","title":"List platforms with system requirements support — sysreqs_platforms","text":"List platforms system requirements support","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_platforms.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"List platforms with system requirements support — sysreqs_platforms","text":"","code":"sysreqs_platforms()"},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_platforms.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"List platforms with system requirements support — sysreqs_platforms","text":"Data frame columns: name: human readable OS name. os: OS name, e.g. linux. distribution: OS id, e.g. ubuntu redhat. version: distribution version. star means versions supported, also supported vendor. update_command: command run update system package metadata. install_command: command run install packages. query_command: name tool use query system package information.","code":""},{"path":[]},{"path":"https://r-lib.github.io/pkgdepends/dev/reference/sysreqs_platforms.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"List platforms with system requirements support — sysreqs_platforms","text":"","code":"sysreqs_platforms() #> # A data frame: 10 × 7 #> name os distribution version update_command install_command #> #> 1 Ubuntu Linux linux ubuntu * apt-get -y up… apt-get -y ins… #> 2 Debian Linux linux debian * apt-get -y up… apt-get -y ins… #> 3 CentOS Linux linux centos * NA yum install -y #> 4 Rocky Linux linux rockylinux * NA dnf install -y #> 5 Red Hat Ente… linux redhat 6 NA yum install -y #> 6 Red Hat Ente… linux redhat 7 NA yum install -y #> 7 Red Hat Ente… linux redhat * NA dnf install -y #> 8 Fedora Linux linux fedora * NA dnf install -y #> 9 openSUSE Lin… linux opensuse * NA zypper --non-i… #> 10 SUSE Linux E… linux sle * NA zypper --non-i… #> # ℹ 1 more variable: query_command "},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-development-version","dir":"Changelog","previous_headings":"","what":"pkgdepends (development version)","title":"pkgdepends (development version)","text":"pkgdepends now supports gitlab:: package sources better, adding explicit syntax specify subdirectories (#353, @dgkf). gitlab:: git:: package sources now support git submodules git-submodules configuration option set TRUE. See ?\"pkgdepends-config\" (#354). new ?ignore-unavailable parameter makes easy ignore soft dependencies unavailable (https://github.com/r-lib/pak/issues/606). pkgdepends now automatically ignores soft dependencies incompatible OS type (OS_type entry DESCRIPTION) installing packages.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-072","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.7.2","title":"pkgdepends 0.7.2","text":"CRAN release: 2024-03-17 pkgdepends now supports * wildcard parameter specifications, parameters applied packages. E.g. *=?source means compiling packages source.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-071","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.7.1","title":"pkgdepends 0.7.1","text":"CRAN release: 2023-12-10 pkgdepends now import glue, rprojroot prettyunits packages. pkgdepends can now handle case Config/Needs/* dependencies requested package repository.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-070","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.7.0","title":"pkgdepends 0.7.0","text":"CRAN release: 2023-11-10 pkgdepends now correctly resolves latest GitHub release @*release notation (@pawelru, #321, #275). pkgdepends now correctly handles multiple instances package metadata, different R version requirements (https://github.com/r-lib/pak/issues/534, #331, https://github.com/r-lib/pak/issues/538). git:: package references work better now Azure DevOps (@jameslairdsmith, #333, #342). pkgdepends now better job accepting installed packages, avoids reinstalling packages needed using lock file (https://github.com/r-lib/actions/issues/759, #338).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-060","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.6.0","title":"pkgdepends 0.6.0","text":"CRAN release: 2023-07-18 Many system requirements improvements: sysreqs_check_installed(): check required system packages installed, sysreqs_fix_installed(): install missing system packages, sysreqs_db_list(): list system requirements database, sysreqs_db_match(): match SystemRrequirements field(s) database, sysreqs_db_update(): update system requirements database, sysreqs_install_plan(): look system requirements package dependencies, sysreqs_is_supported(): check pkgdepends supports system requirements platform, sysreqs_list_system_packages(): list installed system packages, sysreqs_platforms(): list supported platforms. New pkg_installation_proposal methods: get_sysreqs(), show_sysreqs() update_sysreqs(). output $show_solution() now includes system requirements. New sysreqs_platform configuration option. pkgdepends now looks system requirements asynchronously, dependency resolution. pkgdepends now reinstall system requirements default, already installed. (can force reinstall/upgrade sysreqs_update configuration option.) New gitlab:: package source install packages GitLab (#315). pkgdepends now correctly parses multiple git:: packages (#318). Fix @*release reference latest release. git:: package sources now support version 1 git protocol. E.g. Bioconductor git repositories now work: git::https://git.bioconductor.org/packages/limma (#314). platforms config parameter now works correctly deps:: package sources (https://github.com/r-lib/pak/issues/522). New include_linkingto config parameter always include LinkingTo packages solution, even binaries (#485). pkg_name_check() now include Acromine results, web site unstable.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-050","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.5.0","title":"pkgdepends 0.5.0","text":"CRAN release: 2023-04-19 pkgdepends now support git repositories package references. E.g. git::https://github.com/r-lib/pak.git. pkgdepends now supports versioned CRAN packages, e.g. dplyr@1.1.1 always install dplyr 1.1.1. Note CRAN packages supported, Bioconductor packages (yet). pkgdepends now alternative system requirements lookup implementation. supports Fedora Debian systems well, addition Debian, Ubuntu, SUSE RedHat derivatives. can switch implementation setting R_PKG_SYSREQS2 environment variable true. pkgdepends now better job looking dependencies hand-selected dependency types. E.g. dependencies = \"LinkingTo\". pkgdepends now removes ?ignore-d packages dependencies, uses correct version comparison ?ignore-.r (https://github.com/r-lib/actions/issues/708). pkgdepends now fail circular soft dependencies (#306). pkgdepends now reports dependency solver failures better cases (#305, https://github.com/r-lib/pak/issues/474). pkgdepends now uses locally built CRAN binaries cache.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-040","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.4.0","title":"pkgdepends 0.4.0","text":"CRAN release: 2022-12-17 pkgdepends much improved informative error messages now. work yet finished, find unclear error message, please open issue. Thank ! solver now robust non-canonical input (e.g. DESCRIPTION files) (https://github.com/r-lib/pak/issues/423). Better installation output. Standard output error now collected together (https://github.com/r-lib/pkgdepends/commit/0669f0f8c). solver now better job multiple versions package present repository (https://github.com/r-lib/actions/issues/559). pkg_name_check() now works , needed fix changes https://crandb.r-pkg.org. Explicit package names local URL package sources, package=local::... package=url::... now parsed correctly dependencies. pkgdepends now robust Archs fields missing CRAN metadata packages compiled code (https://github.com/r-lib/pak/issues/448). url:: packages now always work correctly, even digest package installed (https://github.com/r-lib/pak/issues/433). pkgdepends now robust installing packages subdirectories GitHub repositories (https://github.com/r-lib/pak/issues/431, @paleolimbot). Parameters ?reinstall, ?source ?ignore now work correctly specified package=?parameter format (#294).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-032","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.3.2","title":"pkgdepends 0.3.2","text":"CRAN release: 2022-09-08 ?ignore parameter works correctly now. dependency resolution now fail package found. pkgdepends can now install url:: remotes GitHub. pkgdepends now fail package .tar.gz GitHub snapshot subdirectory, subdirectory subdirectory. pkgdepends now errors early deduce name package Remotes Config/Needs/* entry. Solver failures now include details cases previously . pkgdepends can now update packages Docker containers old version installed different Docker later (https://github.com/r-lib/pak/issues/251) pkgdepends errors now user friendlier better formatted.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-031","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.3.1","title":"pkgdepends 0.3.1","text":"CRAN release: 2022-04-08 dependency solver now uses better heuristics (effectively) freeze multiple repositories multiple versions packages (e.g. RSPM CRAN) (#277).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-030","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.3.0","title":"pkgdepends 0.3.0","text":"CRAN release: 2022-02-16 New ?ignore--r parameter ignore optional dependencies need newer R version (#243). New ?ignore parameter ignore optional dependency. Allow specifying downstream package parameters package=?param syntax. $update() operation now works better :: refs, always install version planned . System requirement installation now robust works Unix shell expressions (#347). Make system dependency installation robust (https://github.com/r-lib/pak/issues/347). CRAN-like resolution robust now repository missing usual metadata. lock file pretty JSON now. pkgdepends now return tibbles, simple data frames. still printed concisely long pillar package loaded. pkgdepends now handles version requirement types properly: ‘<’, ‘<=’, ==, >=, >.","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-020","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.2.0","title":"pkgdepends 0.2.0","text":"CRAN release: 2021-11-29 pkgdepends now Much better platform support, including arm64 packages macOS, single-arch multi-arch binary packages Windows. Better configuration via environment variables options, see ?\"pkgdepends-config\" details. Many improvements lock files, .e. $create_lockfile() method pkg_installation_proposal. System requirements support. currently active Linux, CI environment variable set true. can set PKG_SYSREQS environment variable true turn situations. See ?\"pkgdepends-config\". new :: reference type can used install package source. See ?pkg_refs .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-012","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.1.2","title":"pkgdepends 0.1.2","text":"CRAN release: 2021-06-30 remotes can now update packages installed pak. past sometimes work (#301).","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-011","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.1.1","title":"pkgdepends 0.1.1","text":"CRAN release: 2021-05-16 pkg_name_check() works .","code":""},{"path":"https://r-lib.github.io/pkgdepends/dev/news/index.html","id":"pkgdepends-010","dir":"Changelog","previous_headings":"","what":"pkgdepends 0.1.0","title":"pkgdepends 0.1.0","text":"CRAN release: 2021-03-16 First CRAN release.","code":""}]