Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

DEG along trajectories #3

Open
arutik opened this issue Mar 4, 2020 · 0 comments
Open

DEG along trajectories #3

arutik opened this issue Mar 4, 2020 · 0 comments

Comments

@arutik
Copy link

arutik commented Mar 4, 2020

Hi,

Could you please help me understand the way you did DE analysis along pseudotime trajectories in differential_expression.r script?

I'm trying to understand the DE_ftest_pt function but it's not documented so I can't tell what is happening.

Also why do you choose the anova F-test for the comparison? And why 6 degrees of freedom?

Thank you!

Sincerely,
Anna Arutyunyan
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@arutik