individual locate test, tqdm, & bare minimal testing env (#324)

* break out locate tests

* address tqdm & bare min testing

* bump min scipy to 1.2.1

* bump min scipy to 1.3.2

* bump min pandas to 1.0.5

* bump min geopandas to 0.8.0

* bump min geopandas to 0.10.0

* pin min tqdm in 3.9; remove from 3.8

* try 3.11 testing again

* 3.11 shapely>=2

* update codecov; drop 310-DEV,310-shapely

* update supported versions

.ci/310.yaml

@@ -3,16 +3,17 @@ channels:
   - conda-forge
 dependencies:
   - python=3.10
-  - geopandas>=0.7.0
+  - geopandas>=0.10.0
   - libpysal
   - matplotlib
   - networkx
-  - numpy>=1.3
-  - pandas>=1
+  - numpy>=1.21
+  - pandas>=1.0.5
   - scikit-learn>=0.22
-  - scipy>=1.0
+  - scipy>=1.3.2
   - shapely
   - spaghetti
+  - tqdm=>4.27.0
   # testing
   - codecov
   - coverage

.ci/310-DEV.yaml → .ci/311-DEV.yaml

@@ -2,16 +2,17 @@ name: test
 channels:
   - conda-forge
 dependencies:
-  - python=3.10
-  - geopandas>=0.7.0
+  - python=3.11
+  - geopandas>=0.10.0
   - matplotlib
   - networkx
-  - numpy>=1.3
-  - pandas>=1
+  - numpy>=1.21
+  - pandas>=1.0.5
   - pip
   - scikit-learn>=0.22
-  - scipy>=1.0
+  - scipy>=1.3.2
   - spaghetti
+  - tqdm>=4.27.0
   # testing
   - codecov
   - coverage

.ci/310-DEV_shapely_dev.yaml → .ci/311-DEV_shapely_dev.yaml

@@ -3,17 +3,18 @@ channels:
   - conda-forge
   - conda-forge/label/shapely_dev
 dependencies:
-  - python=3.10
+  - python=3.11
   - geopandas>=0.12.0
   - matplotlib
   - networkx
-  - numpy>=1.3
-  - pandas>=1
+  - numpy>=1.21
+  - pandas>=1.0.5
   - pip
   - scikit-learn>=0.22
-  - scipy>=1.0
+  - scipy>=1.3.2
   - shapely>=2.0b1
   - spaghetti
+  - tqdm>=4.27.0
   # testing
   - codecov
   - coverage

.ci/311.yaml

@@ -0,0 +1,28 @@
+name: test
+channels:
+  - conda-forge
+dependencies:
+  - python=3.11
+  - geopandas>=0.10.0
+  - libpysal
+  - matplotlib
+  - networkx
+  - numpy>=1.21
+  - pandas>=1.0.5
+  - scikit-learn>=0.22
+  - scipy>=1.3.2
+  - shapely
+  - spaghetti
+  - tqdm=>4.27.0
+  # testing
+  - codecov
+  - coverage
+  - pytest
+  - pytest-cov
+  - pytest-xdist
+  # docs
+  - nbsphinx
+  - numpydoc
+  - sphinx<=4.5.0
+  - sphinxcontrib-bibtex
+  - sphinx_bootstrap_theme

.ci/38.yaml → .ci/38-MIN.yaml

@@ -3,14 +3,14 @@ channels:
   - conda-forge
 dependencies:
   - python=3.8
-  - geopandas>=0.7.0
+  - geopandas=0.10.0
   - libpysal
   - matplotlib
   - networkx
-  - numpy>=1.3
-  - pandas>=1
-  - scikit-learn>=0.22
-  - scipy>=1.0
+  - numpy=1.21
+  - pandas=1.0.5
+  - scikit-learn=0.22
+  - scipy=1.3.2
   - shapely
   - spaghetti
   # testing

.ci/39.yaml

@@ -3,16 +3,17 @@ channels:
   - conda-forge
 dependencies:
   - python=3.9
-  - geopandas>=0.7.0
+  - geopandas>=0.10.0
   - libpysal
   - matplotlib
   - networkx
-  - numpy>=1.3
-  - pandas>=1
+  - numpy>=1.21
+  - pandas>=1.0.5
   - scikit-learn>=0.22
-  - scipy>=1.0
+  - scipy>=1.3.2
   - shapely
   - spaghetti
+  - tqdm=4.27.0
   # testing
   - codecov
   - coverage

.github/workflows/testing.yml

@@ -20,11 +20,18 @@
      strategy:
        matrix:
          os: [ubuntu-latest]
-         environment-file: [.ci/38.yaml, .ci/39.yaml, .ci/310.yaml, .ci/310-DEV.yaml, .ci/310-DEV_shapely_dev.yaml]
+         environment-file: [
+            .ci/38-MIN.yaml,
+            .ci/39.yaml,
+            .ci/310.yaml,
+            .ci/311.yaml,
+            .ci/311-DEV.yaml,
+            .ci/311-DEV_shapely_dev.yaml,
+            ]
          include:
-           - environment-file: .ci/310.yaml
+           - environment-file: .ci/311.yaml
              os: macos-latest
-           - environment-file: .ci/310.yaml
+           - environment-file: .ci/311.yaml
              os: windows-latest
        fail-fast: false
 
@@ -43,7 +50,7 @@
          shell: bash -l {0}
          run: pip install pulp 
 
-       - name: install bleeding edge libpysal (only Ubuntu / Python 3.10)
+       - name: install bleeding edge libpysal (only Ubuntu w/ latest Python)
          shell: bash -l {0}
          run: pip install git+https://github.com/pysal/libpysal.git@master
          if: matrix.os == 'ubuntu-latest' && contains(matrix.environment-file, 'DEV')

codecov.yml

@@ -1,6 +1,6 @@
 codecov:
   notify:
-    after_n_builds: 7
+    after_n_builds: 8
 coverage:
   range: 50..95
   round: nearest
@@ -18,5 +18,5 @@ coverage:
 comment:
   layout: "reach, diff, files"
   behavior: once
-  after_n_builds: 7
+  after_n_builds: 8
   require_changes: true

docs/installation.rst

@@ -3,7 +3,7 @@
 Installation
 ============
 
-spopt supports Python 3.8_, 3.9_, and 3.10_. Please make sure that you are
+spopt supports Python 3.8_, 3.9_, 3.10_, and 3.11_. Please make sure that you are
 operating in a Python >= 3.8 environment.
 
 Installing released version
@@ -46,6 +46,7 @@ contribute to spopt development.
 .. _3.8: https://docs.python.org/3.8/
 .. _3.9: https://docs.python.org/3.9/
 .. _3.10: https://docs.python.org/3.10/
+.. _3.11: https://docs.python.org/3.11/
 .. _Python Package Index: https://pypi.org/project/spopt/
 .. _pysal/spopt: https://github.com/pysal/spopt
 .. _fork: https://help.github.com/articles/fork-a-repo/ 

environment.yml

@@ -3,17 +3,18 @@ channels:
   - conda-forge
 dependencies: 
   - python=3.10
-  - geopandas>=0.7.0
+  - geopandas>=0.10.0
   - jupyterlab
   - libpysal
   - mapclassify
   - networkx
-  - numpy>=1.3
-  - pandas>=1
+  - numpy>=1.21
+  - pandas>=1.0.5
   - pip
   - pulp
   - scikit-learn>=0.22
-  - scipy>=1.0
+  - scipy>=1.3.2
+  - tqdm>=4.27.0
 
   # notebook/binder specific
   - folium

requirements.txt

@@ -1,9 +1,10 @@
-geopandas>=0.7
+geopandas>=0.10.0
 libpysal
 networkx
-numpy>=1.3
-pandas>=1
+numpy>=1.21
+pandas>=1.0.5
 pulp
 scikit-learn>=0.22
-scipy>=0.11
+scipy>=1.3.2
 spaghetti
+tqdm>=4.27.0

requirements_dev.txt

@@ -1,2 +1,3 @@
 black
 pre-commit
+tqdm>=4.27.0

setup.py

@@ -57,14 +57,15 @@ def setup_package():
             "Programming Language :: Python :: 3.8",
             "Programming Language :: Python :: 3.9",
             "Programming Language :: Python :: 3.10",
+            "Programming Language :: Python :: 3.11",
         ],
         license="3-Clause BSD",
         packages=find_packages(),
         py_modules=[package],
         install_requires=install_reqs,
         extras_require=extras_reqs,
         zip_safe=False,
-        python_requires=">=3.7",
+        python_requires=">=3.8",
     )