Bump Pyro version to 0.3.4 (#1959)

examples/air/main.py

@@ -245,7 +245,7 @@ def per_param_optim_args(module_name, param_name):
 
 
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="Pyro AIR example", argument_default=argparse.SUPPRESS)
     parser.add_argument('-n', '--num-steps', type=int, default=int(1e8),
                         help='number of optimization steps to take')

examples/baseball.py

@@ -362,7 +362,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="Baseball batting average using HMC")
     parser.add_argument("-n", "--num-samples", nargs="?", default=200, type=int)
     parser.add_argument("--num-chains", nargs='?', default=4, type=int)

examples/bayesian_regression.py

@@ -137,7 +137,7 @@ def main(args):
 
 
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="parse args")
     parser.add_argument('-n', '--num-epochs', default=1000, type=int)
     parser.add_argument('-b', '--batch-size', default=N, type=int)

examples/contrib/autoname/mixture.py

@@ -74,7 +74,7 @@ def main(args):
 
 
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="parse args")
     parser.add_argument('-n', '--num-epochs', default=200, type=int)
     parser.add_argument('--jit', action='store_true')

examples/contrib/autoname/scoping_mixture.py

@@ -66,7 +66,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="parse args")
     parser.add_argument('-n', '--num-epochs', default=200, type=int)
     args = parser.parse_args()

examples/contrib/autoname/tree_data.py

@@ -104,7 +104,7 @@ def main(args):
 
 
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="parse args")
     parser.add_argument('-n', '--num-epochs', default=100, type=int)
     args = parser.parse_args()

examples/contrib/gp/sv-dkl.py

@@ -164,7 +164,7 @@ def main(args):
 
 
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description='Pyro GP MNIST Example')
     parser.add_argument('--data-dir', type=str, default=None, metavar='PATH',
                         help='default directory to cache MNIST data')

examples/contrib/oed/ab_test.py

@@ -114,7 +114,7 @@ def main(num_vi_steps, num_bo_steps, seed):
 
 
 if __name__ == "__main__":
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="A/B test experiment design using VI")
     parser.add_argument("-n", "--num-vi-steps", nargs="?", default=5000, type=int)
     parser.add_argument('--num-bo-steps', nargs="?", default=5, type=int)

examples/dmm/dmm.py

@@ -432,7 +432,7 @@ def do_evaluation():
 
 # parse command-line arguments and execute the main method
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
 
     parser = argparse.ArgumentParser(description="parse args")
     parser.add_argument('-n', '--num-epochs', type=int, default=5000)

examples/eight_schools/mcmc.py

@@ -42,7 +42,7 @@ def main(args):
 
 
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description='Eight Schools MCMC')
     parser.add_argument('--num-samples', type=int, default=1000,
                         help='number of MCMC samples (default: 1000)')

examples/eight_schools/svi.py

@@ -74,7 +74,7 @@ def main(args):
 
 
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description='Eight Schools SVI')
     parser.add_argument('--lr', type=float, default=0.01,
                         help='learning rate (default: 0.01)')

examples/hmm.py

@@ -616,7 +616,7 @@ def main(args):
 
 
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="MAP Baum-Welch learning Bach Chorales")
     parser.add_argument("-m", "--model", default="1", type=str,
                         help="one of: {}".format(", ".join(sorted(models.keys()))))

examples/inclined_plane.py

@@ -121,7 +121,7 @@ def main(args):
 
 
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="parse args")
     parser.add_argument('-n', '--num-samples', default=500, type=int)
     args = parser.parse_args()

examples/lda.py

@@ -137,7 +137,7 @@ def main(args):
 
 
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="Amortized Latent Dirichlet Allocation")
     parser.add_argument("-t", "--num-topics", default=8, type=int)
     parser.add_argument("-w", "--num-words", default=1024, type=int)

examples/lkj.py

@@ -48,7 +48,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="Demonstrate the use of an LKJ Prior")
     parser.add_argument("--num-samples", nargs="?", default=200, type=int)
     parser.add_argument("--n", nargs="?", default=500, type=int)

examples/minipyro.py

@@ -65,7 +65,7 @@ def guide(data):
 
 
 if __name__ == "__main__":
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="Mini Pyro demo")
     parser.add_argument("-b", "--backend", default="minipyro")
     parser.add_argument("-n", "--num-steps", default=1001, type=int)

examples/rsa/generics.py

@@ -154,7 +154,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="parse args")
     parser.add_argument('-n', '--num-samples', default=10, type=int)
     args = parser.parse_args()

examples/rsa/hyperbole.py

@@ -151,7 +151,7 @@ def main(args):
 
 
 if __name__ == "__main__":
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="parse args")
     parser.add_argument('-n', '--num-samples', default=10, type=int)
     parser.add_argument('--price', default=10000, type=int)

examples/rsa/schelling.py

@@ -76,7 +76,7 @@ def main(args):
 
 
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="parse args")
     parser.add_argument('-n', '--num-samples', default=10, type=int)
     parser.add_argument('--depth', default=2, type=int)

examples/rsa/schelling_false.py

@@ -89,7 +89,7 @@ def main(args):
 
 
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="parse args")
     parser.add_argument('-n', '--num-samples', default=10, type=int)
     parser.add_argument('--depth', default=3, type=int)

examples/rsa/semantic_parsing.py

@@ -337,7 +337,7 @@ def is_all_qud(world):
 
 
 if __name__ == "__main__":
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description="parse args")
     parser.add_argument('-n', '--num-samples', default=10, type=int)
     args = parser.parse_args()

examples/sparse_gamma_def.py

@@ -233,7 +233,7 @@ def main(args):
 
 
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     # parse command line arguments
     parser = argparse.ArgumentParser(description="parse args")
     parser.add_argument('-n', '--num-epochs', default=1500, type=int, help='number of training epochs')

examples/vae/ss_vae_M2.py

@@ -380,7 +380,7 @@ def main(args):
               "-sup 3000 -zd 50 -hl 500 -lr 0.00042 -b1 0.95 -bs 200 -log ./tmp.log"
 
 if __name__ == "__main__":
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
 
     parser = argparse.ArgumentParser(description="SS-VAE\n{}".format(EXAMPLE_RUN))
 

examples/vae/vae.py

@@ -198,7 +198,7 @@ def main(args):
 
 
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     # parse command line arguments
     parser = argparse.ArgumentParser(description="parse args")
     parser.add_argument('-n', '--num-epochs', default=101, type=int, help='number of training epochs')

examples/vae/vae_comparison.py

@@ -245,7 +245,7 @@ def main(args):
 
 
 if __name__ == '__main__':
-    assert pyro.__version__.startswith('0.3.3')
+    assert pyro.__version__.startswith('0.3.4')
     parser = argparse.ArgumentParser(description='VAE using MNIST dataset')
     parser.add_argument('-n', '--num-epochs', nargs='?', default=10, type=int)
     parser.add_argument('--batch_size', nargs='?', default=128, type=int)

pyro/__init__.py

@@ -7,7 +7,7 @@
                              plate, random_module, sample, validation_enabled)
 from pyro.util import set_rng_seed
 
-version_prefix = '0.3.3'
+version_prefix = '0.3.4'
 
 # Get the __version__ string from the auto-generated _version.py file, if exists.
 try:

setup.py

@@ -56,8 +56,6 @@
 
 # examples/tutorials
 EXTRAS_REQUIRE = [
-    # TODO: remove once https://github.com/ipython/ipython/issues/11809 is fixed.
-    'ipython<7.6.0',
     'jupyter>=1.0.0',
     'matplotlib>=1.3',
     'pillow',
@@ -99,9 +97,7 @@
             'nbval',
             'pytest>=4.1',
             'pytest-cov',
-            # TODO: remove once https://github.com/pyro-ppl/pyro/issues/1871
-            # is fixed.
-            'scipy>=1.1, <1.3',
+            'scipy>=1.1',
         ],
         'profile': ['prettytable', 'pytest-benchmark', 'snakeviz'],
         'dev': EXTRAS_REQUIRE + [
@@ -115,9 +111,7 @@
             'pypandoc',
             'pytest>=4.1',
             'pytest-xdist',
-            # TODO: remove once https://github.com/pyro-ppl/pyro/issues/1871
-            # is fixed.
-            'scipy>=1.1, < 1.3',
+            'scipy>=1.1',
             'sphinx',
             'sphinx_rtd_theme',
             'yapf',

tutorial/source/air.ipynb

@@ -41,7 +41,7 @@
     "import numpy as np\n",
     "\n",
     "smoke_test = ('CI' in os.environ)\n",
-    "assert pyro.__version__.startswith('0.3.3')\n",
+    "assert pyro.__version__.startswith('0.3.4')\n",
     "pyro.enable_validation(True)"
    ]
   },

tutorial/source/bayesian_regression.ipynb

@@ -55,7 +55,7 @@
     "\n",
     "# for CI testing\n",
     "smoke_test = ('CI' in os.environ)\n",
-    "assert pyro.__version__.startswith('0.3.3')\n",
+    "assert pyro.__version__.startswith('0.3.4')\n",
     "pyro.enable_validation(True)\n",
     "pyro.set_rng_seed(1)\n",
     "pyro.enable_validation(True)"

tutorial/source/bayesian_regression_ii.ipynb

@@ -41,7 +41,7 @@
     "import pyro.optim as optim\n",
     "\n",
     "pyro.set_rng_seed(1)\n",
-    "assert pyro.__version__.startswith('0.3.3')"
+    "assert pyro.__version__.startswith('0.3.4')"
    ]
   },
   {

tutorial/source/bo.ipynb

@@ -54,7 +54,7 @@
     "import pyro\n",
     "import pyro.contrib.gp as gp\n",
     "\n",
-    "assert pyro.__version__.startswith('0.3.3')\n",
+    "assert pyro.__version__.startswith('0.3.4')\n",
     "pyro.enable_validation(True)  # can help with debugging\n",
     "pyro.set_rng_seed(1)"
    ]

tutorial/source/easyguide.ipynb

@@ -45,7 +45,7 @@
     "\n",
     "pyro.enable_validation(True)\n",
     "smoke_test = ('CI' in os.environ)\n",
-    "assert pyro.__version__.startswith('0.3.3')"
+    "assert pyro.__version__.startswith('0.3.4')"
    ]
   },
   {

tutorial/source/ekf.ipynb

@@ -98,7 +98,7 @@
     "from pyro.contrib.tracking.measurements import PositionMeasurement\n",
     "\n",
     "smoke_test = ('CI' in os.environ)\n",
-    "assert pyro.__version__.startswith('0.3.3')\n",
+    "assert pyro.__version__.startswith('0.3.4')\n",
     "pyro.enable_validation(True)"
    ]
   },

tutorial/source/enumeration.ipynb

@@ -50,7 +50,7 @@
     "from pyro.ops.indexing import Vindex\n",
     "\n",
     "smoke_test = ('CI' in os.environ)\n",
-    "assert pyro.__version__.startswith('0.3.3')\n",
+    "assert pyro.__version__.startswith('0.3.4')\n",
     "pyro.enable_validation()\n",
     "pyro.set_rng_seed(0)"
    ]

tutorial/source/gmm.ipynb

@@ -42,7 +42,7 @@
     "from pyro.infer import SVI, TraceEnum_ELBO, config_enumerate, infer_discrete\n",
     "\n",
     "smoke_test = ('CI' in os.environ)\n",
-    "assert pyro.__version__.startswith('0.3.3')\n",
+    "assert pyro.__version__.startswith('0.3.4')\n",
     "pyro.enable_validation(True)"
    ]
   },

tutorial/source/gp.ipynb

@@ -61,7 +61,7 @@
     "import pyro.distributions as dist\n",
     "\n",
     "smoke_test = ('CI' in os.environ)  # ignore; used to check code integrity in the Pyro repo\n",
-    "assert pyro.__version__.startswith('0.3.3')\n",
+    "assert pyro.__version__.startswith('0.3.4')\n",
     "pyro.enable_validation(True)       # can help with debugging\n",
     "pyro.set_rng_seed(0)"
    ]

tutorial/source/gplvm.ipynb

@@ -39,7 +39,7 @@
     "import pyro.ops.stats as stats\n",
     "\n",
     "smoke_test = ('CI' in os.environ)  # ignore; used to check code integrity in the Pyro repo\n",
-    "assert pyro.__version__.startswith('0.3.3')\n",
+    "assert pyro.__version__.startswith('0.3.4')\n",
     "pyro.enable_validation(True)       # can help with debugging\n",
     "pyro.set_rng_seed(1)"
    ]

tutorial/source/jit.ipynb

@@ -48,7 +48,7 @@
     "from pyro.optim import Adam\n",
     "\n",
     "smoke_test = ('CI' in os.environ)\n",
-    "assert pyro.__version__.startswith('0.3.3')\n",
+    "assert pyro.__version__.startswith('0.3.4')\n",
     "pyro.enable_validation(True)    # <---- This is always a good idea!"
    ]
   },

tutorial/source/svi_part_i.ipynb

@@ -266,7 +266,7 @@
     "n_steps = 2 if smoke_test else 2000\n",
     "\n",
     "# enable validation (e.g. validate parameters of distributions)\n",
-    "assert pyro.__version__.startswith('0.3.3')\n",
+    "assert pyro.__version__.startswith('0.3.4')\n",
     "pyro.enable_validation(True)\n",
     "\n",
     "# clear the param store in case we're in a REPL\n",

tutorial/source/svi_part_iii.ipynb

@@ -285,7 +285,7 @@
     "import sys\n",
     "\n",
     "# enable validation (e.g. validate parameters of distributions)\n",
-    "assert pyro.__version__.startswith('0.3.3')\n",
+    "assert pyro.__version__.startswith('0.3.4')\n",
     "pyro.enable_validation(True)\n",
     "\n",
     "# this is for running the notebook in our testing framework\n",

tutorial/source/tensor_shapes.ipynb

@@ -52,7 +52,7 @@
     "from pyro.optim import Adam\n",
     "\n",
     "smoke_test = ('CI' in os.environ)\n",
-    "assert pyro.__version__.startswith('0.3.3')\n",
+    "assert pyro.__version__.startswith('0.3.4')\n",
     "pyro.enable_validation(True)    # <---- This is always a good idea!\n",
     "\n",
     "# We'll ue this helper to check our models are correct.\n",

tutorial/source/tracking_1d.ipynb

@@ -31,7 +31,7 @@
     "from pyro.optim import Adam\n",
     "\n",
     "%matplotlib inline\n",
-    "assert pyro.__version__.startswith('0.3.3')\n",
+    "assert pyro.__version__.startswith('0.3.4')\n",
     "pyro.enable_validation(True)\n",
     "smoke_test = ('CI' in os.environ)"
    ]