pyemu continuous integration #1630
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name: pyemu continuous integration | |
on: | |
schedule: | |
- cron: '0 8 * * *' # run at 8 AM UTC (12 AM PST, 8 PM NZST) | |
push: | |
pull_request: | |
jobs: | |
pyemuCI: | |
name: autotests | |
runs-on: ${{ matrix.os }} | |
timeout-minutes: 120 | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest, windows-latest] # , macos-latest] | |
python-version: [3.8, 3.9, "3.10", "3.11"] | |
run-type: [std] | |
test-path: ["."] | |
include: | |
- os: macos-latest | |
python-version: 3.9 | |
steps: | |
- name: Checkout repo | |
uses: actions/checkout@v3 # checksout this repo | |
- name: Set Windows ENV | |
if: runner.os == 'Windows' | |
uses: ilammy/msvc-dev-cmd@v1 | |
# Setup conda env | |
- name: Install Conda environment using micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: etc/environment.yml | |
environment-name: pyemu | |
create-args: >- | |
python=${{ matrix.python-version }} | |
cache-downloads: true | |
cache-environment: true | |
- name: Install pyemu | |
shell: bash -l {0} | |
run: | | |
pip install -e . | |
micromamba list | |
- name: Install Modflow executables | |
uses: modflowpy/install-modflow-action@v1 | |
- name: Add executables directory to path | |
shell: bash | |
run: | | |
echo "$MODFLOW_BIN_PATH" >> $GITHUB_PATH | |
echo "$HOME/.local/bin" >> $GITHUB_PATH | |
echo $GITHUB_PATH | |
# order matters for this step - after setting path to executables | |
- name: Install PEST++ suite using get-pestpp | |
shell: bash -l {0} | |
run: | | |
get-pestpp :home | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
- name: ${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.test-path }} | |
shell: bash -l {0} | |
working-directory: ./autotest | |
run: | | |
pytest -v -n=auto --tb=native --cov=pyemu --cov-report=lcov ${{ matrix.test-path }} | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
- name: Test Notebooks | |
if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == 3.9 }} | |
shell: bash -l {0} | |
working-directory: ./examples | |
run: | | |
micromamba install --name pyemu jupyter jupytext | |
pytest -v -n=auto --nbmake --cov=pyemu --cov-report=lcov:../autotest/coverage.lcov \ | |
--cov-config=../autotest/.coveragerc *.ipynb | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
- name: Coveralls | |
uses: coverallsapp/github-action@master | |
with: | |
github-token: ${{ secrets.GITHUB_TOKEN }} | |
flag-name: ${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.test-path }} | |
parallel: true | |
path-to-lcov: autotest/coverage.lcov | |
coveralls_finish: | |
needs: pyemuCI | |
runs-on: ubuntu-latest | |
steps: | |
- name: Coveralls Finished | |
uses: coverallsapp/github-action@master | |
with: | |
github-token: ${{ secrets.GITHUB_TOKEN }} | |
parallel-finished: true | |
path-to-lcov: autotest/coverage.lcov |