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setup.cfg
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[metadata]
name = pypeit
description = PypeIt Spectroscopic Reduction
long_description = file: README.rst
long_description_content_type = text/x-rst
author = PypeIt Collaboration
author_email = [email protected]
license = BSD-3
url = https://github.com/pypeit/PypeIt
edit_on_github = False
github_project = pypeit/PypeIt
keywords = pypeit, PypeIt, astronomy, Keck, UCO, Lick, spectroscopy, data reduction
classifiers =
Development Status :: 4 - Beta
Intended Audience :: Science/Research
License :: OSI Approved :: BSD License
Natural Language :: English
Operating System :: OS Independent
Programming Language :: Python
Programming Language :: Python :: 3.11
Programming Language :: Python :: 3.12
Programming Language :: Python :: 3.13
Topic :: Documentation :: Sphinx
Topic :: Scientific/Engineering :: Astronomy
Topic :: Software Development :: Libraries :: Python Modules
Topic :: Software Development :: User Interfaces
[options]
zip_safe = False
use_2to3=False
packages = find:
python_requires = >=3.11,<3.14
setup_requires = setuptools_scm
include_package_data = True
install_requires =
numpy>=1.26
astropy>=6.0
extension-helpers>=1.0
packaging>=22.0
scipy>=1.9
matplotlib>=3.7
PyYAML>=6.0
PyERFA>=2.0.0
fast-histogram>=0.11
configobj>=5.0.6
scikit-learn>=1.2
IPython>=8.0.0
ginga>=5.1.0
linetools>=0.3.2
qtpy>=2.2.0
pygithub
bottleneck
pyqt6
scripts =
bin/pypeit_c_enabled
bin/pypeit_chk_plugins
bin/pypeit_version
bin/pypeit_cp_spec1d
# NOTES:
# - pygit2 is used by the cache system to pull files from the correct branch on
# GitHub
# - psutil and pytest-qt are strictly only needed for the dev-suite
[options.extras_require]
scikit-image =
scikit-image>=0.23
specutils =
specutils>=1.13
test =
pygit2
pytest>=7.0.0
pytest-astropy
tox
pytest-cov
coverage
docs =
sphinx>=1.6,<8
docutils<0.21
sphinx-automodapi
sphinx_rtd_theme==2.0.0
devsuite =
psutil
pytest-qt
dev =
# scikit-image
scikit-image>=0.23
# specutils
specutils>=1.13
# test
pygit2
pytest>=7.0.0
pytest-astropy
tox
pytest-cov
coverage
# docs
sphinx>=1.6,<8
docutils<0.21
sphinx-automodapi
sphinx_rtd_theme==2.0.0
# dev-suite
psutil
pytest-qt
[options.entry_points]
console_scripts =
# non-GUI scripts
pypeit_arxiv_solution = pypeit.scripts.arxiv_solution:ArxivSolution.entry_point
pypeit_cache_github_data = pypeit.scripts.cache_github_data:CacheGithubData.entry_point
pypeit_clean_cache = pypeit.scripts.clean_cache:CleanCache.entry_point
pypeit_chk_flexure = pypeit.scripts.chk_flexure:ChkFlexure.entry_point
pypeit_chk_for_calibs = pypeit.scripts.chk_for_calibs:ChkForCalibs.entry_point
pypeit_chk_noise_1dspec = pypeit.scripts.chk_noise_1dspec:ChkNoise1D.entry_point
pypeit_chk_noise_2dspec = pypeit.scripts.chk_noise_2dspec:ChkNoise2D.entry_point
pypeit_chk_scattlight = pypeit.scripts.chk_scattlight:ChkScattLight.entry_point
pypeit_coadd_1dspec = pypeit.scripts.coadd_1dspec:CoAdd1DSpec.entry_point
pypeit_coadd_2dspec = pypeit.scripts.coadd_2dspec:CoAdd2DSpec.entry_point
pypeit_coadd_datacube = pypeit.scripts.coadd_datacube:CoAddDataCube.entry_point
pypeit_collate_1d = pypeit.scripts.collate_1d:Collate1D.entry_point
pypeit_edge_inspector = pypeit.scripts.edge_inspector:EdgeInspector.entry_point
pypeit_extract_datacube = pypeit.scripts.extract_datacube:ExtractDataCube.entry_point
pypeit_flux_calib = pypeit.scripts.flux_calib:FluxCalib.entry_point
pypeit_flux_setup = pypeit.scripts.flux_setup:FluxSetup.entry_point
pypeit_install_extinctfile = pypeit.scripts.install_extinctfile:InstallExtinctfile.entry_point
pypeit_install_linelist = pypeit.scripts.install_linelist:InstallLinelist.entry_point
pypeit_install_ql_calibs = pypeit.scripts.install_ql_calib:InstallQLCalibs.entry_point
pypeit_install_telluric = pypeit.scripts.install_telluric:InstallTelluric.entry_point
pypeit_install_wvarxiv = pypeit.scripts.install_wvarxiv:InstallWvArxiv.entry_point
#pypeit_lowrdx_pixflat = pypeit.scripts.lowrdx_pixflat:entry_point
pypeit_lowrdx_skyspec = pypeit.scripts.lowrdx_skyspec:LowRDXSkySpec.entry_point
pypeit_multislit_flexure = pypeit.scripts.multislit_flexure:MultiSlitFlexure.entry_point
pypeit_obslog = pypeit.scripts.obslog:ObsLog.entry_point
pypeit_parse_slits = pypeit.scripts.parse_slits:ParseSlits.entry_point
pypeit_print_bpm = pypeit.scripts.print_bpm:PrintBPM.entry_point
pypeit_qa_html = pypeit.scripts.qa_html:QAHtml.entry_point
pypeit_ql = pypeit.scripts.ql:QL.entry_point
run_pypeit = pypeit.scripts.run_pypeit:RunPypeIt.entry_point
pypeit_sensfunc = pypeit.scripts.sensfunc:SensFunc.entry_point
pypeit_setup = pypeit.scripts.setup:Setup.entry_point
pypeit_setup_coadd2d = pypeit.scripts.setup_coadd2d:SetupCoAdd2D.entry_point
pypeit_show_arxiv = pypeit.scripts.show_arxiv:ShowArxiv.entry_point
# NOTE: pypeit_show_wvcalib uses linetools to open a json file, but uses
# matplotlib to show the spectrum...
pypeit_show_wvcalib = pypeit.scripts.show_wvcalib:ShowWvCalib.entry_point
pypeit_tellfit = pypeit.scripts.tellfit:TellFit.entry_point
pypeit_trace_edges = pypeit.scripts.trace_edges:TraceEdges.entry_point
pypeit_compile_wvarxiv = pypeit.scripts.compile_wvarxiv:CompileWVarxiv.entry_point
# GUI scripts
# Ideally want to be able to do something like this for the following scripts:
#
# pypeit_arcid_plot = pypeit.scripts.arcid_plot:entry_point [gui]
#
# so that they only get installed when optional gui dependencies are installed.
# However, gui dependencies like ginga and linetools are currently deeply embedded
# and not cleanly separable.
# pypeit_arcid_plot = pypeit.scripts.arcid_plot:entry_point
pypeit_chk_alignments = pypeit.scripts.chk_alignments:ChkAlignments.entry_point
pypeit_chk_edges = pypeit.scripts.chk_edges:ChkEdges.entry_point
pypeit_chk_flats = pypeit.scripts.chk_flats:ChkFlats.entry_point
pypeit_chk_tilts = pypeit.scripts.chk_tilts:ChkTilts.entry_point
pypeit_chk_wavecalib = pypeit.scripts.chk_wavecalib:ChkWaveCalib.entry_point
pypeit_compare_sky = pypeit.scripts.compare_sky:CompareSky.entry_point
pypeit_identify = pypeit.scripts.identify:Identify.entry_point
pypeit_ql_multislit = pypeit.scripts.ql_multislit:QL_MOS.entry_point
pypeit_show_1dspec = pypeit.scripts.show_1dspec:Show1DSpec.entry_point
pypeit_show_2dspec = pypeit.scripts.show_2dspec:Show2DSpec.entry_point
pypeit_skysub_regions = pypeit.scripts.skysub_regions:SkySubRegions.entry_point
pypeit_view_fits = pypeit.scripts.view_fits:ViewFits.entry_point
pypeit_setup_gui = pypeit.scripts.setup_gui:SetupGUI.entry_point
pypeit_show_pixflat = pypeit.scripts.show_pixflat:ShowPixFlat.entry_point
ginga.rv.plugins =
SlitWavelength = pypeit.display:setup_SlitWavelength
[tool:pytest]
testpaths = "pypeit/tests"
[coverage:run]
omit =
pypeit/_astropy_init*
pypeit/conftest.py
pypeit/*setup_package*
pypeit/tests/*
pypeit/*/tests/*
pypeit/extern/*
pypeit/version*
*/pypeit/_astropy_init*
*/pypeit/conftest.py
*/pypeit/*setup_package*
*/pypeit/tests/*
*/pypeit/*/tests/*
*/pypeit/extern/*
*/pypeit/version*
[coverage:report]
exclude_lines =
# Have to re-enable the standard pragma
pragma: no cover
# Don't complain about packages we have installed
except ImportError
# Don't complain if tests don't hit assertions
raise AssertionError
raise NotImplementedError
# Don't complain about script hooks
def main\(.*\):
# Ignore branches that don't pertain to this version of Python
pragma: py{ignore_python_version}
# Don't complain about IPython completion helper
def _ipython_key_completions_