Broken when using with Protege 5.6.1

[LorenzBuehmann]

This API is broken when using with Protege 5.6.1 which happens when using the SPARQL query tab because the OWL API version has been bumped

Protege: 4.5.25
this lib: 4.5.15

leads to

java.lang.NoSuchMethodError: 'void org.semanticweb.owlapi.rdf.model.AbstractTranslator.<init>(org.semanticweb.owlapi.model.OWLOntologyManager, org.semanticweb.owlapi.model.OWLOntology, boolean, org.semanticweb.owlapi.util.IndividualAppearance, org.semanticweb.owlapi.util.AxiomAppearance, java.util.concurrent.atomic.AtomicInteger, java.util.Map)'
	at org.protege.owl.rdf.impl.RDFTranslator.<init>(RDFTranslator.java:107) ~[na:na]
	at org.protege.owl.rdf.impl.RDFTranslator.translate(RDFTranslator.java:55) ~[na:na]
	at org.protege.owl.rdf.impl.OwlTripleStoreImpl.addAxiom(OwlTripleStoreImpl.java:99) ~[na:na]
	at org.protege.owl.rdf.Utilities.loadOwlTripleStore(Utilities.java:48) ~[na:na]
	at org.protege.owl.rdf.Utilities.getOwlTripleStore(Utilities.java:32) ~[na:na]
	at org.protege.editor.owl.rdf.repository.BasicSparqlReasoner.precalculate(BasicSparqlReasoner.java:54) ~[na:na]
	at org.protege.editor.owl.rdf.SparqlQueryView.initializeReasoner(SparqlQueryView.java:34) ~[na:na]
	at org.protege.editor.owl.rdf.SparqlQueryView.initialiseOWLView(SparqlQueryView.java:24) ~[na:na]
	at org.protege.editor.owl.ui.view.AbstractOWLViewComponent.initialise(AbstractOWLViewComponent.java:43) ~[na:na]
	at org.protege.editor.core.ui.view.View.createContent(View.java:413) ~[na:na]
	at org.protege.editor.core.ui.view.View.createUI(View.java:220) ~[na:na]
	at org.protege.editor.core.ui.view.View$1.hierarchyChanged(View.java:124) ~[na:na]

Basically, the constructor of org.semanticweb.owlapi.rdf.model.AbstractTranslator has been changed, see https://github.com/owlcs/owlapi/blob/owlapi-parent-4.5.24/parsers/src/main/java/org/semanticweb/owlapi/rdf/model/AbstractTranslator.java#L289-L303

It also needs the OWLDocumentFormat now as an argument which has to be addressed in org.protege.owl.rdf.impl.RDFTranslator

[anastass]

Dear Support Team,
I am using Protégé 5.6.3 and this feature still does not work. Are there any plans to fix this issue?
Thank you!

[gouttegd]

This is in fact already fixed in the master branch (6c2e962), so all that needs to happen is a 3.0.1 release of rdf-library that Protégé could then use. Any chance of that happening?

[tejaswinihbhat]

PREFIX owl: http://www.w3.org/2002/07/owl#
PREFIX rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#
PREFIX rdfs: http://www.w3.org/2000/01/rdf-schema#
PREFIX onto: http://www.example.org/ontologies/fish.owl#
SELECT ?species ?speciesName
WHERE {
?species rdfs:label ?speciesName.
FILTER NOT EXISTS { ?species onto:hasStatus ?Status. }
}

@gouttegd Can you help with this please

[gouttegd]

@tejaswinihbhat Do not spam issues with comments about your problem, even if you believe the issue is related.

You’re seemingly using the Snap-SPARQL plugin, which AFAIK does not support the NOT EXISTS construct from SPARQL 1.1.

[LorenzBuehmann]

Hi, neither the Snap SPARQL view nor the standard Sparql tab do support SPARQL 1.1, thus FILTER (NOT) EXISTS fails with the error message