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5.6.1 Windows download - SPARQL pane not showing properly #35

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pwin opened this issue Feb 27, 2023 · 1 comment
Closed

5.6.1 Windows download - SPARQL pane not showing properly #35

pwin opened this issue Feb 27, 2023 · 1 comment

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@pwin
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pwin commented Feb 27, 2023

I downloaded the standard Windows distribution and loaded an ontology from a URL. The SPARQL pane only showed a purple bar at the top and no content. The error log showed the following:

INFO 21:27:13 ------------------------------------ Protege -----------------------------------
INFO 21:27:13 Protege Desktop
INFO 21:27:13 Version 5.6.1, Build
INFO 21:27:13
INFO 21:27:13
INFO 21:27:13 ----------------------------------- Platform -----------------------------------
INFO 21:27:13 Java: JVM 11.0.17+8 Memory: 2124M
INFO 21:27:13 Language: en, Country: GB
INFO 21:27:13 Framework: Apache Software Foundation (1.9)
INFO 21:27:13 OS: windows10 (10.0.0)
INFO 21:27:13 Processor: x86-64

INFO 21:27:13
INFO 21:27:13 ------------------------------------ Plugins -----------------------------------
INFO 21:27:13 Plugin: Cellfie Protege 5.0+ Plugin (2.1.0)
INFO 21:27:13 Plugin: OWL Code Generation Plug-in (2.0.0)
INFO 21:27:13 Plugin: ELK Reasoner Protege Plug-in (0.5.0)
INFO 21:27:13 Plugin: Existential Query (2.0.0)
INFO 21:27:13 Plugin: Explanation Workbench (3.0.1)
INFO 21:27:13 Plugin: OntoGraf (2.0.3)
INFO 21:27:13 Plugin: DL Query (4.0.1)
INFO 21:27:13 Plugin: HermiT Reasoner (1.4.3.456)
INFO 21:27:13 Plugin: Browser View (OWLDoc) (3.0.3)
INFO 21:27:13 Plugin: OWLViz (5.0.3)
INFO 21:27:13 Plugin: Proof Utility Library (0.1.0)
INFO 21:27:13 Plugin: OWLAPI RDF Library (3.0.0)
INFO 21:27:13 Plugin: SPARQL Query Plugin (3.0.0)
INFO 21:27:13 Plugin: SWRLTab Plugin (2.0.10)
INFO 21:27:13
INFO 21:27:16 Creating and setting up empty (default) editor kit
INFO 21:27:16 OWL API Version: 4.5.25.2023-02-15T19:15:49Z
INFO 21:27:17 Cannot generate ontology catalog for ontology at http://www.semanticweb.org/user/ontologies/2023/1/untitled-ontology-13. URI scheme is not "file"
INFO 21:27:19 ------------------------------- Auto-update Check ------------------------------
INFO 21:27:19 Auto-update last performed: Mon Feb 27 21:15:59 GMT 2023
INFO 21:27:19 Auto-update has been performed today. Not performing it again.
INFO 21:27:19
INFO 21:27:57 OWL API Version: 4.5.25.2023-02-15T19:15:49Z
INFO 21:27:57 ------------------------------- Loading Ontology -------------------------------
INFO 21:27:57 Loading ontology from https://ontologies.semanticarts.com/o/gistCore
INFO 21:27:58 Notice: root element does not have an xml:base. Relative IRIs will be resolved against https://ontologies.semanticarts.com/o/gistCore
INFO 21:27:59 Finished loading https://ontologies.semanticarts.com/o/gistCore
INFO 21:27:59 Loading for ontology and imports closure successfully completed in 2396 ms
INFO 21:27:59
INFO 21:28:00 ---------------------------- Disposing of Workspace ----------------------------
INFO 21:28:00 Saved tab state for 'Individuals by class' tab
INFO 21:28:00 Saved tab state for 'DL Query' tab
INFO 21:28:00 Saved tab state for 'Entities' tab
INFO 21:28:00 Saved tab state for 'Active ontology' tab
INFO 21:28:00 Saved workspace
INFO 21:28:00 Disposed of 'Individuals by class' tab
INFO 21:28:00 Disposed of 'DL Query' tab
INFO 21:28:00 Disposed of 'Entities' tab
INFO 21:28:00 Disposed of 'Active ontology' tab
INFO 21:28:00 Disposed of workspace
INFO 21:28:00
ERROR 21:28:32 Uncaught Exception in thread 'AWT-EventQueue-0'
java.lang.NoSuchMethodError: 'void org.semanticweb.owlapi.rdf.model.AbstractTranslator.(org.semanticweb.owlapi.model.OWLOntologyManager, org.semanticweb.owlapi.model.OWLOntology, boolean, org.semanticweb.owlapi.util.IndividualAppearance, org.semanticweb.owlapi.util.AxiomAppearance, java.util.concurrent.atomic.AtomicInteger, java.util.Map)'
at org.protege.owl.rdf.impl.RDFTranslator.(RDFTranslator.java:107) ~[na:na]
at org.protege.owl.rdf.impl.RDFTranslator.translate(RDFTranslator.java:55) ~[na:na]
at org.protege.owl.rdf.impl.OwlTripleStoreImpl.addAxiom(OwlTripleStoreImpl.java:99) ~[na:na]
at org.protege.owl.rdf.Utilities.loadOwlTripleStore(Utilities.java:48) ~[na:na]
at org.protege.owl.rdf.Utilities.getOwlTripleStore(Utilities.java:32) ~[na:na]
at org.protege.editor.owl.rdf.repository.BasicSparqlReasoner.precalculate(BasicSparqlReasoner.java:54) ~[na:na]
at org.protege.editor.owl.rdf.SparqlQueryView.initializeReasoner(SparqlQueryView.java:34) ~[na:na]
at org.protege.editor.owl.rdf.SparqlQueryView.initialiseOWLView(SparqlQueryView.java:24) ~[na:na]
at org.protege.editor.owl.ui.view.AbstractOWLViewComponent.initialise(AbstractOWLViewComponent.java:43) ~[na:na]
at org.protege.editor.core.ui.view.View.createContent(View.java:413) ~[na:na]
at org.protege.editor.core.ui.view.View.createUI(View.java:220) ~[na:na]
at org.protege.editor.core.ui.view.View$1.hierarchyChanged(View.java:124) ~[na:na]
at java.desktop/java.awt.Component.processHierarchyEvent(Unknown Source) ~[na:na]
at java.desktop/java.awt.Component.processEvent(Unknown Source) ~[na:na]
at java.desktop/java.awt.Container.processEvent(Unknown Source) ~[na:na]
at java.desktop/java.awt.Component.dispatchEventImpl(Unknown Source) ~[na:na]
at java.desktop/java.awt.Container.dispatchEventImpl(Unknown Source) ~[na:na]
at java.desktop/java.awt.Component.dispatchEvent(Unknown Source) ~[na:na]
at java.desktop/java.awt.Component.createHierarchyEvents(Unknown Source) ~[na:na]
at java.desktop/java.awt.Container.createHierarchyEvents(Unknown Source) ~[na:na]
at java.desktop/java.awt.Container.createHierarchyEvents(Unknown Source) ~[na:na]
at java.desktop/java.awt.Container.createHierarchyEvents(Unknown Source) ~[na:na]
at java.desktop/java.awt.Container.createHierarchyEvents(Unknown Source) ~[na:na]
at java.desktop/java.awt.Container.createHierarchyEvents(Unknown Source) ~[na:na]
at java.desktop/java.awt.Component.show(Unknown Source) ~[na:na]
at java.desktop/java.awt.Component.show(Unknown Source) ~[na:na]
at java.desktop/java.awt.Component.setVisible(Unknown Source) ~[na:na]
at java.desktop/javax.swing.JComponent.setVisible(Unknown Source) ~[na:na]
at java.desktop/javax.swing.JTabbedPane.fireStateChanged(Unknown Source) ~[na:na]
at java.desktop/javax.swing.JTabbedPane$ModelListener.stateChanged(Unknown Source) ~[na:na]
at java.desktop/javax.swing.DefaultSingleSelectionModel.fireStateChanged(Unknown Source) ~[na:na]
at java.desktop/javax.swing.DefaultSingleSelectionModel.setSelectedIndex(Unknown Source) ~[na:na]
at java.desktop/javax.swing.JTabbedPane.setSelectedIndexImpl(Unknown Source) ~[na:na]
at java.desktop/javax.swing.JTabbedPane.setSelectedIndex(Unknown Source) ~[na:na]
at java.desktop/javax.swing.plaf.basic.BasicTabbedPaneUI$Handler.mousePressed(Unknown Source) ~[na:na]
at java.desktop/java.awt.AWTEventMulticaster.mousePressed(Unknown Source) ~[na:na]
at java.desktop/java.awt.AWTEventMulticaster.mousePressed(Unknown Source) ~[na:na]
at java.desktop/java.awt.Component.processMouseEvent(Unknown Source) ~[na:na]
at java.desktop/javax.swing.JComponent.processMouseEvent(Unknown Source) ~[na:na]
at java.desktop/java.awt.Component.processEvent(Unknown Source) ~[na:na]
at java.desktop/java.awt.Container.processEvent(Unknown Source) ~[na:na]
at java.desktop/java.awt.Component.dispatchEventImpl(Unknown Source) ~[na:na]
at java.desktop/java.awt.Container.dispatchEventImpl(Unknown Source) ~[na:na]
at java.desktop/java.awt.Component.dispatchEvent(Unknown Source) ~[na:na]
at java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) ~[na:na]
at java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) ~[na:na]
at java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) ~[na:na]
at java.desktop/java.awt.Container.dispatchEventImpl(Unknown Source) ~[na:na]
at java.desktop/java.awt.Window.dispatchEventImpl(Unknown Source) ~[na:na]
at java.desktop/java.awt.Component.dispatchEvent(Unknown Source) ~[na:na]
at java.desktop/java.awt.EventQueue.dispatchEventImpl(Unknown Source) ~[na:na]
at java.desktop/java.awt.EventQueue$4.run(Unknown Source) ~[na:na]
at java.desktop/java.awt.EventQueue$4.run(Unknown Source) ~[na:na]
at java.base/java.security.AccessController.doPrivileged(Native Method) ~[na:na]
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) ~[na:na]
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) ~[na:na]
at java.desktop/java.awt.EventQueue$5.run(Unknown Source) ~[na:na]
at java.desktop/java.awt.EventQueue$5.run(Unknown Source) ~[na:na]
at java.base/java.security.AccessController.doPrivileged(Native Method) ~[na:na]
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) ~[na:na]
at java.desktop/java.awt.EventQueue.dispatchEvent(Unknown Source) ~[na:na]
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) ~[na:na]
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) ~[na:na]
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) ~[na:na]
at java.desktop/java.awt.EventDispatchThread.pumpEvents(Unknown Source) ~[na:na]
at java.desktop/java.awt.EventDispatchThread.pumpEvents(Unknown Source) ~[na:na]
at java.desktop/java.awt.EventDispatchThread.run(Unknown Source) ~[na:na]
@gouttegd
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This is the same bug as protegeproject/protege#1110.

Closing here to try to centralise the issues on the main protege repository.

@gouttegd gouttegd closed this as not planned Won't fix, can't repro, duplicate, stale Mar 23, 2023
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@pwin @gouttegd