From aad6eb49014dc0b5c4ecc630fe1c53cd5e37b5ac Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Mon, 16 Dec 2024 14:39:12 +0100 Subject: [PATCH 01/35] docs: add pytorch integration guide. --- docs/features/pytorch.md | 140 ++++++++++++++++++ docs/reference/pixi_manifest.md | 1 + .../pixi_tomls/pytorch-conda-forge.toml | 31 ++++ .../pytorch-from-pytorch-channel.toml | 16 ++ .../source_files/pixi_tomls/pytorch-pypi.toml | 19 +++ .../pyproject_tomls/pytorch-conda-forge.toml | 33 +++++ .../pytorch-from-pytorch-channel.toml | 20 +++ .../pyproject_tomls/pytorch-pypi.toml | 19 +++ mkdocs.yml | 1 + tests/integration_rust/project_tests.rs | 15 ++ 10 files changed, 295 insertions(+) create mode 100644 docs/features/pytorch.md create mode 100644 docs/source_files/pixi_tomls/pytorch-conda-forge.toml create mode 100644 docs/source_files/pixi_tomls/pytorch-from-pytorch-channel.toml create mode 100644 docs/source_files/pixi_tomls/pytorch-pypi.toml create mode 100644 docs/source_files/pyproject_tomls/pytorch-conda-forge.toml create mode 100644 docs/source_files/pyproject_tomls/pytorch-from-pytorch-channel.toml create mode 100644 docs/source_files/pyproject_tomls/pytorch-pypi.toml diff --git a/docs/features/pytorch.md b/docs/features/pytorch.md new file mode 100644 index 000000000..443e6bafe --- /dev/null +++ b/docs/features/pytorch.md @@ -0,0 +1,140 @@ +# Pytorch Integration Guide + +## Overview +This guide explains how to integrate PyTorch with `pixi`, it supports multiple ways of installing PyTorch. + +- Install PyTorch using `conda-forge` Conda channel (Recommended) +- Install PyTorch using `pypi`, using our `uv`'s integration. (Most versions available) +- Install PyTorch using `pytorch` Conda channel (Legacy) + +With these options you can choose the best way to install PyTorch based on your requirements. + +## Installing from Conda-forge +You can install PyTorch using the `conda-forge` channel. +These are the community maintained builds of PyTorch. +You can make direct use of the Nvidia provided packages to make sure the packages can work together. + +!!! note + Currently not well-supported for Windows, but there is lots of work being done to get this working. + Follow the work on the [feedstock](https://github.com/conda-forge/pytorch-cpu-feedstock) +!!! note + Pixi uses the `system-requirements.cuda` to tell it can use the `cuda` packages. + Without it, pixi will install the `cpu` versions. + +=== "`pixi.toml`" + ```toml title="Bare minimum conda-forge pytorch with cuda installation" + --8<-- "docs/source_files/pixi_tomls/pytorch-conda-forge.toml:minimal" + ``` +=== "`pyproject.toml`" + ```toml title="Bare minimum conda-forge pytorch with cuda installation" + --8<-- "docs/source_files/pyproject_tomls/pytorch-conda-forge.toml:minimal" + ``` + +To deliberately install a specific version of the `cuda` packages you can depend on the `cuda-version` package which will then be interpreted by the other packages at resolve time. +Without specifying the `cuda-version` package, the latest version of cuda will be installed. +=== "`pixi.toml`" + ```toml title="Add cuda version to the conda-forge pytorch installation" + --8<-- "docs/source_files/pixi_tomls/pytorch-conda-forge.toml:cuda-version" + ``` +=== "`pyproject.toml`" + ```toml title="Add cuda version to the conda-forge pytorch installation" + --8<-- "docs/source_files/pyproject_tomls/pytorch-conda-forge.toml:cuda-version" + ``` + +With `conda-forge` you can also install the `cpu` version of PyTorch. +A common use-case is having two environments, one for CUDA machines and one for none-CUDA machines. + +=== "`pixi.toml`" + ```toml title="Adding a cpu environment" + --8<-- "docs/source_files/pixi_tomls/pytorch-conda-forge.toml:use-envs" + ``` +=== "`pyproject.toml`" + ```toml title="Split into environments and add a CPU environment" + --8<-- "docs/source_files/pyproject_tomls/pytorch-conda-forge.toml:use-envs" + ``` + +Now you should be able to extend that with your dependencies and tasks. + +Links to notable packages: + +- [pytorch](https://prefix.dev/channels/conda-forge/packages/pytorch) +- [pytorch-cpu](https://prefix.dev/channels/conda-forge/packages/pytorch-cpu) +- [pytorch-gpu](https://prefix.dev/channels/conda-forge/packages/pytorch-gpu) +- [torchvision](https://prefix.dev/channels/conda-forge/packages/torchvision) +- [torchaudio](https://prefix.dev/channels/conda-forge/packages/torchaudio) +- [cuda-version](https://prefix.dev/channels/conda-forge/packages/cuda-version) + +## Installing from PyPi +Thanks to the integration with `uv` we can also install PyTorch from `pypi`. + +### Pytorch index +PyTorch packages are provided through a custom index, which is maintained by the PyTorch team. +To install PyTorch from the PyTorch index, you need to add the indexes to manifest. +Best to do this per dependency to force the index to be used. + +- CPU only: [https://download.pytorch.org/whl/cpu](https://download.pytorch.org/whl/cpu) +- CUDA 11.8: [https://download.pytorch.org/whl/cu118](https://download.pytorch.org/whl/cu118) +- CUDA 12.1: [https://download.pytorch.org/whl/cu121](https://download.pytorch.org/whl/cu121) +- CUDA 12.4: [https://download.pytorch.org/whl/cu124](https://download.pytorch.org/whl/cu124) +- ROCm6: [https://download.pytorch.org/whl/rocm6.2](https://download.pytorch.org/whl/rocm6.2) + +=== "`pixi.toml`" + ```toml title="Install PyTorch from pypi" + --8<-- "docs/source_files/pixi_tomls/pytorch-pypi.toml:minimal" + ``` +=== "`pyproject.toml`" + ```toml title="Install PyTorch from pypi" + --8<-- "docs/source_files/pyproject_tomls/pytorch-pypi.toml:minimal" + ``` + +## Installing from PyTorch channel +!!! warning + This depends on the [non-free](https://www.anaconda.com/blog/is-conda-free) `main` channel from Anaconda and mixing it with `conda-forge` can lead to conflicts. + +!!! note + This is the [legacy](https://dev-discuss.pytorch.org/t/pytorch-deprecation-of-conda-nightly-builds/2590) way of installing pytorch, this will not be updated to later versions as pytorch has discontinued their channel. + +=== "`pixi.toml`" + ```toml title="Install PyTorch from the PyTorch channel" + --8<-- "docs/source_files/pixi_tomls/pytorch-from-pytorch-channel.toml:minimal" + ``` +=== "`pyproject.toml`" + ```toml title="Install PyTorch from the PyTorch channel" + --8<-- "docs/source_files/pyproject_tomls/pytorch-from-pytorch-channel.toml:minimal" + ``` + +## Troubleshooting + +- You can test the installation with the following command: +```shell +pixi run python -c "import torch; print(torch.__version__); print(torch.cuda.is_available())" +``` +- You can ask pixi which version of CUDA it finds on your computer with `pixi info`. +``` +> pixi info +... +Virtual packages: __unix=0=0 + : __linux=6.5.9=0 + : __cuda=12.5=0 +... +``` +- Installing `torch` from PyPI and other packages from Conda channels doesn't work. + - The lowest level package in the dependency tree that uses a PyPI package demands that all later packages are also PyPI packages. +- Reasons for broken installations + - Using both `conda-forge` and `pytorch` channels, this can lead to conflicts. Choose one or the other. +- Not installing the GPU version of the `pytorch` package: + - Using [conda-forge](./#installing-from-conda-forge): Use the `system-requirements.cuda` to tell pixi to install the `cuda` packages. And set the `cuda-version` package to the version you want to install. + - Using [PyPI](./#installing-from-pypi): Make sure you are using the correct [index](./#pytorch-index) for the version you want to install. +- Not being able to solve the environment: +``` +├─▶ failed to resolve pypi dependencies +╰─▶ Because only the following versions of torch are available: + torch<=2.5.1 + torch==2.5.1+cpu + and torch==2.5.1 has no wheels with a matching Python ABI tag, we can conclude that torch>=2.5.1,<2.5.1+cpu cannot be used. + And because torch==2.5.1+cpu has no wheels with a matching platform tag and you require torch>=2.5.1, we can conclude that your requirements are + unsatisfiable. +``` +This error occurs when the ABI tag of the Python version doesn't match the wheels available on PyPI. +Fix this by lowering the `requires-python` or `python` dependency. +At the time of writing Python 3.13 is not supported by PyTorch wheels yet. diff --git a/docs/reference/pixi_manifest.md b/docs/reference/pixi_manifest.md index 006d1b72f..bf2ffccc8 100644 --- a/docs/reference/pixi_manifest.md +++ b/docs/reference/pixi_manifest.md @@ -525,6 +525,7 @@ torch = { version = "*", index = "https://download.pytorch.org/whl/cu118" } ``` This is useful for PyTorch specifically, as the registries are pinned to different CUDA versions. +Learn more about installing PyTorch [here](../features/pytorch.md). ##### `git` diff --git a/docs/source_files/pixi_tomls/pytorch-conda-forge.toml b/docs/source_files/pixi_tomls/pytorch-conda-forge.toml new file mode 100644 index 000000000..1ce59bb27 --- /dev/null +++ b/docs/source_files/pixi_tomls/pytorch-conda-forge.toml @@ -0,0 +1,31 @@ +# --8<-- [start:minimal] +[project] +channels = ["conda-forge"] +name = "pytorch-conda-forge" +platforms = ["linux-64"] + +[system-requirements] +cuda = "12.0" + +# --8<-- [start:cuda-version] +[dependencies] +pytorch-gpu = "*" +# --8<-- [end:minimal] +cuda-version = "12.6" +# --8<-- [end:cuda-version] + +# --8<-- [start:use-envs] +[feature.gpu.system-requirements] +cuda = "12.0" + +[feature.gpu.dependencies] +cuda-version = "12.6" +pytorch-gpu = "*" + +[feature.cpu.dependencies] +pytorch-cpu = "*" + +[environments] +cpu = ["cpu"] +default = ["gpu"] +# --8<-- [start:use-envs] diff --git a/docs/source_files/pixi_tomls/pytorch-from-pytorch-channel.toml b/docs/source_files/pixi_tomls/pytorch-from-pytorch-channel.toml new file mode 100644 index 000000000..5be4f9b81 --- /dev/null +++ b/docs/source_files/pixi_tomls/pytorch-from-pytorch-channel.toml @@ -0,0 +1,16 @@ +# --8<-- [start:minimal] +[project] +name = "pytorch-from-pytorch-channel" +# `main` is not free! It's a paid channel for organizations over 200 people. +channels = ["main", "nvidia", "pytorch"] +platforms = ["osx-arm64", "linux-64"] + +[feature.gpu.system-requirements] +cuda = "12.0" + +[dependencies] +pytorch = "*" + +[environments] +gpu = ["gpu"] +# --8<-- [end:minimal] diff --git a/docs/source_files/pixi_tomls/pytorch-pypi.toml b/docs/source_files/pixi_tomls/pytorch-pypi.toml new file mode 100644 index 000000000..11f89f9f6 --- /dev/null +++ b/docs/source_files/pixi_tomls/pytorch-pypi.toml @@ -0,0 +1,19 @@ +# --8<-- [start:minimal] +[project] +channels = ["https://prefix.dev/conda-forge"] +name = "pytorch-pypi" +platforms = ["osx-arm64", "linux-64"] + +[dependencies] +# We need a python version that is compatible with pytorch +python = ">=3.11,<3.13" + +[target.linux-64.pypi-dependencies] +torch = { version = ">=2.5.1", index = "https://download.pytorch.org/whl/cu124" } +torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/cu124" } + +[target.osx.pypi-dependencies] +# OSX has no CUDA support so use the CPU here +torch = { version = ">=2.5.1", index = "https://download.pytorch.org/whl/cpu" } +torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/cpu" } +# --8<-- [start:minimal] diff --git a/docs/source_files/pyproject_tomls/pytorch-conda-forge.toml b/docs/source_files/pyproject_tomls/pytorch-conda-forge.toml new file mode 100644 index 000000000..77ee829fb --- /dev/null +++ b/docs/source_files/pyproject_tomls/pytorch-conda-forge.toml @@ -0,0 +1,33 @@ +# --8<-- [start:minimal] +[project] +name = "pytorch-conda-forge" + +[tool.pixi.project] +channels = ["conda-forge"] +platforms = ["linux-64"] + +[tool.pixi.system-requirements] +cuda = "12.0" + +# --8<-- [start:cuda-version] +[tool.pixi.dependencies] +pytorch-gpu = "*" +# --8<-- [end:minimal] +cuda-version = "12.6" +# --8<-- [end:cuda-version] + +# --8<-- [start:use-envs] +[tool.pixi.feature.gpu.system-requirements] +cuda = "12.0" + +[tool.pixi.feature.gpu.dependencies] +cuda-version = "12.6" +pytorch-gpu = "*" + +[tool.pixi.feature.cpu.dependencies] +pytorch-cpu = "*" + +[tool.pixi.environments] +cpu = ["cpu"] +default = ["gpu"] +# --8<-- [start:use-envs] diff --git a/docs/source_files/pyproject_tomls/pytorch-from-pytorch-channel.toml b/docs/source_files/pyproject_tomls/pytorch-from-pytorch-channel.toml new file mode 100644 index 000000000..19485c959 --- /dev/null +++ b/docs/source_files/pyproject_tomls/pytorch-from-pytorch-channel.toml @@ -0,0 +1,20 @@ +# --8<-- [start:minimal] +[project] +name = "pytorch-from-pytorch-channel" +requires-python = ">= 3.11, < 3.13" +version = "0.1.0" + +[tool.pixi.project] +# `main` is not free! It's a paid channel for organizations over 200 people. +channels = ["main", "nvidia", "pytorch"] +platforms = ["osx-arm64", "linux-64"] + +[tool.pixi.feature.gpu.system-requirements] +cuda = "12.0" + +[tool.pixi.dependencies] +pytorch = "*" + +[tool.pixi.environments] +gpu = ["gpu"] +# --8<-- [end:minimal] diff --git a/docs/source_files/pyproject_tomls/pytorch-pypi.toml b/docs/source_files/pyproject_tomls/pytorch-pypi.toml new file mode 100644 index 000000000..2e4b4a622 --- /dev/null +++ b/docs/source_files/pyproject_tomls/pytorch-pypi.toml @@ -0,0 +1,19 @@ +# --8<-- [start:minimal] +[project] +name = "pytorch-pypi" +# We need a python version that is compatible with pytorch +requires-python = ">= 3.11,<3.13" + +[tool.pixi.project] +channels = ["https://prefix.dev/conda-forge"] +platforms = ["osx-arm64", "linux-64"] + +[tool.pixi.target.linux-64.pypi-dependencies] +torch = { version = ">=2.5.1", index = "https://download.pytorch.org/whl/cu124" } +torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/cu124" } + +[tool.pixi.target.osx.pypi-dependencies] +# OSX has no CUDA support so use the CPU here +torch = { version = ">=2.5.1", index = "https://download.pytorch.org/whl/cpu" } +torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/cpu" } +# --8<-- [start:minimal] diff --git a/mkdocs.yml b/mkdocs.yml index 77d5b7d0e..cfe95be29 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -123,6 +123,7 @@ nav: - Lockfile: features/lockfile.md - System Requirements: features/system_requirements.md - Global Tools: features/global_tools.md + - Pytorch Installation: features/pytorch.md - Building Packages: - Getting started: build/getting_started.md - Dependency Types: build/dependency_types.md diff --git a/tests/integration_rust/project_tests.rs b/tests/integration_rust/project_tests.rs index 856d2d343..de1ce7929 100644 --- a/tests/integration_rust/project_tests.rs +++ b/tests/integration_rust/project_tests.rs @@ -127,6 +127,21 @@ fn parse_valid_docs_manifests() { } } } +#[test] +fn parse_valid_docs_pyproject_manifests() { + // Test all files in the docs/source_files/pyproject_tomls directory + let schema_dir = + PathBuf::from(env!("CARGO_MANIFEST_DIR")).join("docs/source_files/pyproject_tomls"); + for entry in fs_err::read_dir(schema_dir).unwrap() { + let entry = entry.unwrap(); + let path = entry.path(); + if path.extension().map(|ext| ext == "toml").unwrap_or(false) { + let pyproject_toml = fs_err::read_to_string(&path).unwrap(); + let _project = + Project::from_str(&PathBuf::from("pyproject.toml"), &pyproject_toml).unwrap(); + } + } +} #[test] fn parse_valid_docs_configs() { From 45a6c67d7123e7d964328d923e6b09440646d7dd Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Mon, 16 Dec 2024 15:43:13 +0100 Subject: [PATCH 02/35] Update docs/features/pytorch.md Co-authored-by: Tim de Jager --- docs/features/pytorch.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/features/pytorch.md b/docs/features/pytorch.md index 443e6bafe..3a59a4e04 100644 --- a/docs/features/pytorch.md +++ b/docs/features/pytorch.md @@ -30,7 +30,7 @@ You can make direct use of the Nvidia provided packages to make sure the package --8<-- "docs/source_files/pyproject_tomls/pytorch-conda-forge.toml:minimal" ``` -To deliberately install a specific version of the `cuda` packages you can depend on the `cuda-version` package which will then be interpreted by the other packages at resolve time. +To deliberately install a specific version of the `cuda` packages you can depend on the `cuda-version` package which will then be interpreted by the other packages during resolution. Without specifying the `cuda-version` package, the latest version of cuda will be installed. === "`pixi.toml`" ```toml title="Add cuda version to the conda-forge pytorch installation" From bff97ec01db4487fd305c1c2f59d128caa241735 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Mon, 16 Dec 2024 15:43:24 +0100 Subject: [PATCH 03/35] Update docs/features/pytorch.md Co-authored-by: Tim de Jager --- docs/features/pytorch.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/features/pytorch.md b/docs/features/pytorch.md index 3a59a4e04..3eab068d6 100644 --- a/docs/features/pytorch.md +++ b/docs/features/pytorch.md @@ -137,4 +137,4 @@ Virtual packages: __unix=0=0 ``` This error occurs when the ABI tag of the Python version doesn't match the wheels available on PyPI. Fix this by lowering the `requires-python` or `python` dependency. -At the time of writing Python 3.13 is not supported by PyTorch wheels yet. +At the time of writing Python 3.13 is not supported by many PyTorch-dependent wheels yet. From 6e466deca43b56784084027795e88a231bd0dd52 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Mon, 16 Dec 2024 16:01:00 +0100 Subject: [PATCH 04/35] Update docs/features/pytorch.md Co-authored-by: Tim de Jager --- docs/features/pytorch.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/features/pytorch.md b/docs/features/pytorch.md index 3eab068d6..a2df8ae29 100644 --- a/docs/features/pytorch.md +++ b/docs/features/pytorch.md @@ -42,7 +42,7 @@ Without specifying the `cuda-version` package, the latest version of cuda will b ``` With `conda-forge` you can also install the `cpu` version of PyTorch. -A common use-case is having two environments, one for CUDA machines and one for none-CUDA machines. +A common use-case is having two environments, one for CUDA machines and one for non-CUDA machines. === "`pixi.toml`" ```toml title="Adding a cpu environment" From bc9c7130afe873bc31e5c011370448a20da8be88 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Mon, 16 Dec 2024 16:34:45 +0100 Subject: [PATCH 05/35] docs: improve docs further --- docs/features/pytorch.md | 17 ++++++++++++----- 1 file changed, 12 insertions(+), 5 deletions(-) diff --git a/docs/features/pytorch.md b/docs/features/pytorch.md index a2df8ae29..b1b823195 100644 --- a/docs/features/pytorch.md +++ b/docs/features/pytorch.md @@ -14,12 +14,13 @@ You can install PyTorch using the `conda-forge` channel. These are the community maintained builds of PyTorch. You can make direct use of the Nvidia provided packages to make sure the packages can work together. -!!! note +!!! note "Windows" Currently not well-supported for Windows, but there is lots of work being done to get this working. Follow the work on the [feedstock](https://github.com/conda-forge/pytorch-cpu-feedstock) -!!! note +!!! note "System requirements" Pixi uses the `system-requirements.cuda` to tell it can use the `cuda` packages. Without it, pixi will install the `cpu` versions. + More information on how to use `system-requirements` can be found [here](./system_requirements.md). === "`pixi.toml`" ```toml title="Bare minimum conda-forge pytorch with cuda installation" @@ -31,7 +32,9 @@ You can make direct use of the Nvidia provided packages to make sure the package ``` To deliberately install a specific version of the `cuda` packages you can depend on the `cuda-version` package which will then be interpreted by the other packages during resolution. -Without specifying the `cuda-version` package, the latest version of cuda will be installed. +The `cuda-version` package constraints the version of other `cuda` packages, like `cudatoolkit` and it is depended on by some package to make sure the correct version is installed. + + === "`pixi.toml`" ```toml title="Add cuda version to the conda-forge pytorch installation" --8<-- "docs/source_files/pixi_tomls/pytorch-conda-forge.toml:cuda-version" @@ -55,7 +58,7 @@ A common use-case is having two environments, one for CUDA machines and one for Now you should be able to extend that with your dependencies and tasks. -Links to notable packages: +Here are some links to notable packages: - [pytorch](https://prefix.dev/channels/conda-forge/packages/pytorch) - [pytorch-cpu](https://prefix.dev/channels/conda-forge/packages/pytorch-cpu) @@ -67,8 +70,12 @@ Links to notable packages: ## Installing from PyPi Thanks to the integration with `uv` we can also install PyTorch from `pypi`. +!!! note "Mixing `[dependencies]` and `[pypi-dependencies]`" + When using this approach for the `torch` package, you should also install the packages that depend on `torch` from `pypi`. + Thus, not mix the PyPI packages with Conda packages if there are dependencies from the Conda packages to the PyPI ones. + ### Pytorch index -PyTorch packages are provided through a custom index, which is maintained by the PyTorch team. +PyTorch packages are provided through a custom index, these are similar to Conda channels, which are maintained by the PyTorch team. To install PyTorch from the PyTorch index, you need to add the indexes to manifest. Best to do this per dependency to force the index to be used. From 9061c64c0bdb3862b21e6e15e792f8200d0a9540 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 10:00:10 +0100 Subject: [PATCH 06/35] docs: fix pytorch examples on windows --- docs/features/pytorch.md | 13 ++++++++++ .../pixi_tomls/pytorch-conda-forge-envs.toml | 20 ++++++++++++++ .../pixi_tomls/pytorch-conda-forge.toml | 15 ----------- .../pixi_tomls/pytorch-pypi-envs.toml | 26 +++++++++++++++++++ .../source_files/pixi_tomls/pytorch-pypi.toml | 7 ++--- .../pytorch-conda-forge-envs.toml | 23 ++++++++++++++++ .../pyproject_tomls/pytorch-conda-forge.toml | 16 ------------ .../pyproject_tomls/pytorch-pypi-envs.toml | 26 +++++++++++++++++++ .../pyproject_tomls/pytorch-pypi.toml | 6 ++--- 9 files changed, 115 insertions(+), 37 deletions(-) create mode 100644 docs/source_files/pixi_tomls/pytorch-conda-forge-envs.toml create mode 100644 docs/source_files/pixi_tomls/pytorch-pypi-envs.toml create mode 100644 docs/source_files/pyproject_tomls/pytorch-conda-forge-envs.toml create mode 100644 docs/source_files/pyproject_tomls/pytorch-pypi-envs.toml diff --git a/docs/features/pytorch.md b/docs/features/pytorch.md index b1b823195..d10642cd9 100644 --- a/docs/features/pytorch.md +++ b/docs/features/pytorch.md @@ -94,6 +94,19 @@ Best to do this per dependency to force the index to be used. --8<-- "docs/source_files/pyproject_tomls/pytorch-pypi.toml:minimal" ``` +In the PyPI world there is no such thing as `system-requirements` so you will have to specify this logic yourself. +Otherwise, like in the previous example it will always install the cuda version. +You can tell pixi to use multiple environment for the multiple versions of PyTorch, either `cpu` or `gpu`. + +=== "`pixi.toml`" + ```toml title="Use multiple environments for the pypi pytorch installation" + --8<-- "docs/source_files/pixi_tomls/pytorch-pypi.toml:multi-env" + ``` +=== "`pyproject.toml`" + ```toml title="Use multiple environments for the pypi pytorch installation" + --8<-- "docs/source_files/pyproject_tomls/pytorch-pypi.toml:multi-env" + ``` + ## Installing from PyTorch channel !!! warning This depends on the [non-free](https://www.anaconda.com/blog/is-conda-free) `main` channel from Anaconda and mixing it with `conda-forge` can lead to conflicts. diff --git a/docs/source_files/pixi_tomls/pytorch-conda-forge-envs.toml b/docs/source_files/pixi_tomls/pytorch-conda-forge-envs.toml new file mode 100644 index 000000000..4f2de0f9c --- /dev/null +++ b/docs/source_files/pixi_tomls/pytorch-conda-forge-envs.toml @@ -0,0 +1,20 @@ +[project] +channels = ["conda-forge"] +name = "pytorch-conda-forge" +platforms = ["linux-64"] + +# --8<-- [start:use-envs] +[feature.gpu.system-requirements] +cuda = "12.0" + +[feature.gpu.dependencies] +cuda-version = "12.6" +pytorch-gpu = "*" + +[feature.cpu.dependencies] +pytorch-cpu = "*" + +[environments] +cpu = ["cpu"] +default = ["gpu"] +# --8<-- [end:use-envs] \ No newline at end of file diff --git a/docs/source_files/pixi_tomls/pytorch-conda-forge.toml b/docs/source_files/pixi_tomls/pytorch-conda-forge.toml index 1ce59bb27..39f2b276a 100644 --- a/docs/source_files/pixi_tomls/pytorch-conda-forge.toml +++ b/docs/source_files/pixi_tomls/pytorch-conda-forge.toml @@ -14,18 +14,3 @@ pytorch-gpu = "*" cuda-version = "12.6" # --8<-- [end:cuda-version] -# --8<-- [start:use-envs] -[feature.gpu.system-requirements] -cuda = "12.0" - -[feature.gpu.dependencies] -cuda-version = "12.6" -pytorch-gpu = "*" - -[feature.cpu.dependencies] -pytorch-cpu = "*" - -[environments] -cpu = ["cpu"] -default = ["gpu"] -# --8<-- [start:use-envs] diff --git a/docs/source_files/pixi_tomls/pytorch-pypi-envs.toml b/docs/source_files/pixi_tomls/pytorch-pypi-envs.toml new file mode 100644 index 000000000..0e674bcd5 --- /dev/null +++ b/docs/source_files/pixi_tomls/pytorch-pypi-envs.toml @@ -0,0 +1,26 @@ +[project] +name = "pytorch-pypi-envs" +channels = ["https://prefix.dev/conda-forge"] +platforms = ["osx-arm64", "linux-64", "win-64"] + +[dependencies] +# We need a python version that is compatible with pytorch +python = ">=3.11,<3.13" + +# --8<-- [start:multi-env] +[feature.gpu] +platforms = ["linux-64", "win-64"] +system-requirements = { cuda = "12.0" } +[feature.gpu.pypi-dependencies] +torch = { version = ">=2.5.1", index = "https://download.pytorch.org/whl/cu124" } +torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/cu124" } + +[feature.cpu.pypi-dependencies] +torch = { version = ">=2.5.1", index = "https://download.pytorch.org/whl/cpu" } +torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/cpu" } + +[environments] +gpu = { features = ["gpu"] } +# Make CPU the default environment +default = { features = ["cpu"] } +# --8<-- [end:multi-env] \ No newline at end of file diff --git a/docs/source_files/pixi_tomls/pytorch-pypi.toml b/docs/source_files/pixi_tomls/pytorch-pypi.toml index 11f89f9f6..c3576b3b9 100644 --- a/docs/source_files/pixi_tomls/pytorch-pypi.toml +++ b/docs/source_files/pixi_tomls/pytorch-pypi.toml @@ -2,13 +2,13 @@ [project] channels = ["https://prefix.dev/conda-forge"] name = "pytorch-pypi" -platforms = ["osx-arm64", "linux-64"] +platforms = ["osx-arm64", "linux-64", "win-64"] [dependencies] # We need a python version that is compatible with pytorch python = ">=3.11,<3.13" -[target.linux-64.pypi-dependencies] +[pypi-dependencies] torch = { version = ">=2.5.1", index = "https://download.pytorch.org/whl/cu124" } torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/cu124" } @@ -16,4 +16,5 @@ torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/ # OSX has no CUDA support so use the CPU here torch = { version = ">=2.5.1", index = "https://download.pytorch.org/whl/cpu" } torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/cpu" } -# --8<-- [start:minimal] +# --8<-- [end:minimal] + diff --git a/docs/source_files/pyproject_tomls/pytorch-conda-forge-envs.toml b/docs/source_files/pyproject_tomls/pytorch-conda-forge-envs.toml new file mode 100644 index 000000000..1598cbc81 --- /dev/null +++ b/docs/source_files/pyproject_tomls/pytorch-conda-forge-envs.toml @@ -0,0 +1,23 @@ +# --8<-- [start:minimal] +[project] +name = "pytorch-conda-forge" + +[tool.pixi.project] +channels = ["conda-forge"] +platforms = ["linux-64"] + +# --8<-- [start:use-envs] +[tool.pixi.feature.gpu.system-requirements] +cuda = "12.0" + +[tool.pixi.feature.gpu.dependencies] +cuda-version = "12.6" +pytorch-gpu = "*" + +[tool.pixi.feature.cpu.dependencies] +pytorch-cpu = "*" + +[tool.pixi.environments] +cpu = ["cpu"] +default = ["gpu"] +# --8<-- [end:use-envs] diff --git a/docs/source_files/pyproject_tomls/pytorch-conda-forge.toml b/docs/source_files/pyproject_tomls/pytorch-conda-forge.toml index 77ee829fb..ac7f07a35 100644 --- a/docs/source_files/pyproject_tomls/pytorch-conda-forge.toml +++ b/docs/source_files/pyproject_tomls/pytorch-conda-forge.toml @@ -15,19 +15,3 @@ pytorch-gpu = "*" # --8<-- [end:minimal] cuda-version = "12.6" # --8<-- [end:cuda-version] - -# --8<-- [start:use-envs] -[tool.pixi.feature.gpu.system-requirements] -cuda = "12.0" - -[tool.pixi.feature.gpu.dependencies] -cuda-version = "12.6" -pytorch-gpu = "*" - -[tool.pixi.feature.cpu.dependencies] -pytorch-cpu = "*" - -[tool.pixi.environments] -cpu = ["cpu"] -default = ["gpu"] -# --8<-- [start:use-envs] diff --git a/docs/source_files/pyproject_tomls/pytorch-pypi-envs.toml b/docs/source_files/pyproject_tomls/pytorch-pypi-envs.toml new file mode 100644 index 000000000..c179804cb --- /dev/null +++ b/docs/source_files/pyproject_tomls/pytorch-pypi-envs.toml @@ -0,0 +1,26 @@ +[project] +name = "pytorch-pypi-envs" +# We need a python version that is compatible with pytorch +requires-python = ">= 3.11,<3.13" + +[tool.pixi.project] +channels = ["https://prefix.dev/conda-forge"] +platforms = ["osx-arm64", "linux-64", "win-64"] + +# --8<-- [start:multi-env] +[tool.pixi.feature.gpu] +platforms = ["linux-64", "win-64"] +system-requirements = { cuda = "12.0" } +[tool.pixi.feature.gpu.pypi-dependencies] +torch = { version = ">=2.5.1", index = "https://download.pytorch.org/whl/cu124" } +torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/cu124" } + +[tool.pixi.feature.cpu.pypi-dependencies] +torch = { version = ">=2.5.1", index = "https://download.pytorch.org/whl/cpu" } +torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/cpu" } + +[tool.pixi.environments] +gpu = { features = ["gpu"] } +# Make CPU the default environment +default = { features = ["cpu"] } +# --8<-- [end:multi-env] \ No newline at end of file diff --git a/docs/source_files/pyproject_tomls/pytorch-pypi.toml b/docs/source_files/pyproject_tomls/pytorch-pypi.toml index 2e4b4a622..5dbb93df9 100644 --- a/docs/source_files/pyproject_tomls/pytorch-pypi.toml +++ b/docs/source_files/pyproject_tomls/pytorch-pypi.toml @@ -6,9 +6,9 @@ requires-python = ">= 3.11,<3.13" [tool.pixi.project] channels = ["https://prefix.dev/conda-forge"] -platforms = ["osx-arm64", "linux-64"] +platforms = ["osx-arm64", "linux-64", "win-64"] -[tool.pixi.target.linux-64.pypi-dependencies] +[tool.pixi.pypi-dependencies] torch = { version = ">=2.5.1", index = "https://download.pytorch.org/whl/cu124" } torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/cu124" } @@ -16,4 +16,4 @@ torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/ # OSX has no CUDA support so use the CPU here torch = { version = ">=2.5.1", index = "https://download.pytorch.org/whl/cpu" } torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/cpu" } -# --8<-- [start:minimal] +# --8<-- [end:minimal] From 4410131b0a9b4d1d565db3771e9c5034d2858675 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 10:22:34 +0100 Subject: [PATCH 07/35] docs: cleanup example snippets --- docs/features/pytorch.md | 8 ++++---- .../source_files/pixi_tomls/pytorch-conda-forge-envs.toml | 6 +++--- docs/source_files/pixi_tomls/pytorch-conda-forge.toml | 3 +-- docs/source_files/pixi_tomls/pytorch-pypi-envs.toml | 6 +++--- .../pyproject_tomls/pytorch-conda-forge-envs.toml | 5 ++--- .../source_files/pyproject_tomls/pytorch-conda-forge.toml | 2 +- docs/source_files/pyproject_tomls/pytorch-pypi-envs.toml | 4 ++-- 7 files changed, 16 insertions(+), 18 deletions(-) diff --git a/docs/features/pytorch.md b/docs/features/pytorch.md index d10642cd9..bc19f8636 100644 --- a/docs/features/pytorch.md +++ b/docs/features/pytorch.md @@ -49,11 +49,11 @@ A common use-case is having two environments, one for CUDA machines and one for === "`pixi.toml`" ```toml title="Adding a cpu environment" - --8<-- "docs/source_files/pixi_tomls/pytorch-conda-forge.toml:use-envs" + --8<-- "docs/source_files/pixi_tomls/pytorch-conda-forge-envs.toml:use-envs" ``` === "`pyproject.toml`" ```toml title="Split into environments and add a CPU environment" - --8<-- "docs/source_files/pyproject_tomls/pytorch-conda-forge.toml:use-envs" + --8<-- "docs/source_files/pyproject_tomls/pytorch-conda-forge-envs.toml:use-envs" ``` Now you should be able to extend that with your dependencies and tasks. @@ -100,11 +100,11 @@ You can tell pixi to use multiple environment for the multiple versions of PyTor === "`pixi.toml`" ```toml title="Use multiple environments for the pypi pytorch installation" - --8<-- "docs/source_files/pixi_tomls/pytorch-pypi.toml:multi-env" + --8<-- "docs/source_files/pixi_tomls/pytorch-pypi-envs.toml:multi-env" ``` === "`pyproject.toml`" ```toml title="Use multiple environments for the pypi pytorch installation" - --8<-- "docs/source_files/pyproject_tomls/pytorch-pypi.toml:multi-env" + --8<-- "docs/source_files/pyproject_tomls/pytorch-pypi-envs.toml:multi-env" ``` ## Installing from PyTorch channel diff --git a/docs/source_files/pixi_tomls/pytorch-conda-forge-envs.toml b/docs/source_files/pixi_tomls/pytorch-conda-forge-envs.toml index 4f2de0f9c..45ad96012 100644 --- a/docs/source_files/pixi_tomls/pytorch-conda-forge-envs.toml +++ b/docs/source_files/pixi_tomls/pytorch-conda-forge-envs.toml @@ -1,9 +1,9 @@ +# --8<-- [start:use-envs] [project] -channels = ["conda-forge"] +channels = ["https://prefix.dev/conda-forge"] name = "pytorch-conda-forge" platforms = ["linux-64"] -# --8<-- [start:use-envs] [feature.gpu.system-requirements] cuda = "12.0" @@ -17,4 +17,4 @@ pytorch-cpu = "*" [environments] cpu = ["cpu"] default = ["gpu"] -# --8<-- [end:use-envs] \ No newline at end of file +# --8<-- [end:use-envs] diff --git a/docs/source_files/pixi_tomls/pytorch-conda-forge.toml b/docs/source_files/pixi_tomls/pytorch-conda-forge.toml index 39f2b276a..a26ed1ba1 100644 --- a/docs/source_files/pixi_tomls/pytorch-conda-forge.toml +++ b/docs/source_files/pixi_tomls/pytorch-conda-forge.toml @@ -1,6 +1,6 @@ # --8<-- [start:minimal] [project] -channels = ["conda-forge"] +channels = ["https://prefix.dev/conda-forge"] name = "pytorch-conda-forge" platforms = ["linux-64"] @@ -13,4 +13,3 @@ pytorch-gpu = "*" # --8<-- [end:minimal] cuda-version = "12.6" # --8<-- [end:cuda-version] - diff --git a/docs/source_files/pixi_tomls/pytorch-pypi-envs.toml b/docs/source_files/pixi_tomls/pytorch-pypi-envs.toml index 0e674bcd5..1adcd1d37 100644 --- a/docs/source_files/pixi_tomls/pytorch-pypi-envs.toml +++ b/docs/source_files/pixi_tomls/pytorch-pypi-envs.toml @@ -1,13 +1,13 @@ +# --8<-- [start:multi-env] [project] -name = "pytorch-pypi-envs" channels = ["https://prefix.dev/conda-forge"] +name = "pytorch-pypi-envs" platforms = ["osx-arm64", "linux-64", "win-64"] [dependencies] # We need a python version that is compatible with pytorch python = ">=3.11,<3.13" -# --8<-- [start:multi-env] [feature.gpu] platforms = ["linux-64", "win-64"] system-requirements = { cuda = "12.0" } @@ -23,4 +23,4 @@ torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/ gpu = { features = ["gpu"] } # Make CPU the default environment default = { features = ["cpu"] } -# --8<-- [end:multi-env] \ No newline at end of file +# --8<-- [end:multi-env] diff --git a/docs/source_files/pyproject_tomls/pytorch-conda-forge-envs.toml b/docs/source_files/pyproject_tomls/pytorch-conda-forge-envs.toml index 1598cbc81..c730274bc 100644 --- a/docs/source_files/pyproject_tomls/pytorch-conda-forge-envs.toml +++ b/docs/source_files/pyproject_tomls/pytorch-conda-forge-envs.toml @@ -1,12 +1,11 @@ -# --8<-- [start:minimal] +# --8<-- [start:use-envs] [project] name = "pytorch-conda-forge" [tool.pixi.project] -channels = ["conda-forge"] +channels = ["https://prefix.dev/conda-forge"] platforms = ["linux-64"] -# --8<-- [start:use-envs] [tool.pixi.feature.gpu.system-requirements] cuda = "12.0" diff --git a/docs/source_files/pyproject_tomls/pytorch-conda-forge.toml b/docs/source_files/pyproject_tomls/pytorch-conda-forge.toml index ac7f07a35..fa177c7bb 100644 --- a/docs/source_files/pyproject_tomls/pytorch-conda-forge.toml +++ b/docs/source_files/pyproject_tomls/pytorch-conda-forge.toml @@ -3,7 +3,7 @@ name = "pytorch-conda-forge" [tool.pixi.project] -channels = ["conda-forge"] +channels = ["https://prefix.dev/conda-forge"] platforms = ["linux-64"] [tool.pixi.system-requirements] diff --git a/docs/source_files/pyproject_tomls/pytorch-pypi-envs.toml b/docs/source_files/pyproject_tomls/pytorch-pypi-envs.toml index c179804cb..8de09c328 100644 --- a/docs/source_files/pyproject_tomls/pytorch-pypi-envs.toml +++ b/docs/source_files/pyproject_tomls/pytorch-pypi-envs.toml @@ -1,3 +1,4 @@ +# --8<-- [start:multi-env] [project] name = "pytorch-pypi-envs" # We need a python version that is compatible with pytorch @@ -7,7 +8,6 @@ requires-python = ">= 3.11,<3.13" channels = ["https://prefix.dev/conda-forge"] platforms = ["osx-arm64", "linux-64", "win-64"] -# --8<-- [start:multi-env] [tool.pixi.feature.gpu] platforms = ["linux-64", "win-64"] system-requirements = { cuda = "12.0" } @@ -23,4 +23,4 @@ torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/ gpu = { features = ["gpu"] } # Make CPU the default environment default = { features = ["cpu"] } -# --8<-- [end:multi-env] \ No newline at end of file +# --8<-- [end:multi-env] From 6b07f5b5df0af27b167fe677dc253fb291bcaaa0 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 11:00:21 +0100 Subject: [PATCH 08/35] docs: improve system requirements docs --- docs/features/pytorch.md | 24 ++++++++++++++++++++---- docs/features/system_requirements.md | 24 ++++++++++++++++++------ docs/switching_from/conda.md | 6 +++--- 3 files changed, 41 insertions(+), 13 deletions(-) diff --git a/docs/features/pytorch.md b/docs/features/pytorch.md index bc19f8636..e6e0f05c8 100644 --- a/docs/features/pytorch.md +++ b/docs/features/pytorch.md @@ -9,6 +9,23 @@ This guide explains how to integrate PyTorch with `pixi`, it supports multiple w With these options you can choose the best way to install PyTorch based on your requirements. +## System requirements +In the context of PyTorch, [**system requirements**](./system_requirements.md) help pixi understand whether it can install and use CUDA-related packages. +These requirements ensure compatibility during dependency resolution. + +The key mechanism here is the use of virtual packages like __cuda. +Virtual packages signal the available system capabilities (e.g., CUDA version). +By specifying `system-requirements.cuda = "12"`, you are telling pixi that CUDA version 12 is available and can be used during resolution. + +For example: + +- If a package depends on `__cuda >= 12`, pixi will resolve the correct version. +- If a package depends on `__cuda` without version constraints, any available CUDA version can be used. + +Without setting the appropriate `system-requirements.cuda`, pixi will default to installing the **CPU-only** versions of PyTorch and its dependencies. + +A more indepth explanation of system requirements can be found [here](./system_requirements.md). + ## Installing from Conda-forge You can install PyTorch using the `conda-forge` channel. These are the community maintained builds of PyTorch. @@ -17,10 +34,6 @@ You can make direct use of the Nvidia provided packages to make sure the package !!! note "Windows" Currently not well-supported for Windows, but there is lots of work being done to get this working. Follow the work on the [feedstock](https://github.com/conda-forge/pytorch-cpu-feedstock) -!!! note "System requirements" - Pixi uses the `system-requirements.cuda` to tell it can use the `cuda` packages. - Without it, pixi will install the `cpu` versions. - More information on how to use `system-requirements` can be found [here](./system_requirements.md). === "`pixi.toml`" ```toml title="Bare minimum conda-forge pytorch with cuda installation" @@ -74,6 +87,9 @@ Thanks to the integration with `uv` we can also install PyTorch from `pypi`. When using this approach for the `torch` package, you should also install the packages that depend on `torch` from `pypi`. Thus, not mix the PyPI packages with Conda packages if there are dependencies from the Conda packages to the PyPI ones. + The reason for this is that our resolving is a two step process, first resolve the Conda packages and then the PyPI packages. + Thus this can not succeed if we require a Conda package to depend on a PyPI package. + ### Pytorch index PyTorch packages are provided through a custom index, these are similar to Conda channels, which are maintained by the PyTorch team. To install PyTorch from the PyTorch index, you need to add the indexes to manifest. diff --git a/docs/features/system_requirements.md b/docs/features/system_requirements.md index 2dd6cbfb6..4b2d1d067 100644 --- a/docs/features/system_requirements.md +++ b/docs/features/system_requirements.md @@ -1,12 +1,19 @@ # System Requirements in pixi +**System requirements** tell pixi the minimum system specifications needed to install and run your project’s environment. +They ensure that the dependencies match the operating system and hardware of your machine. -**System requirements** define the minimal system specifications necessary during dependency resolution for a project. -For instance, specifying a Unix system with a particular minimal `libc` version ensures that dependencies are compatible -with the project's environment. +Think of it like this: +You’re defining what “kind of computer” your project can run on. +For example, you might require a specific Linux kernel version or a minimum glibc version. +If your machine doesn’t meet these requirements, `pixi run` will fail because the environment can’t work reliably on your system. -System specifications are closely related -to [virtual packages](https://conda.io/projects/conda/en/latest/user-guide/tasks/manage-virtual.html), allowing for -flexible and accurate dependency management. +When resolving dependencies, pixi combines: +• The default requirements for the operating system. +• Any custom requirements you’ve added for your project through the `[system-requirements]`. + +This way, pixi guarantees your environment is consistent and compatible with your machine. + +System specifications are closely related to [virtual packages](https://conda.io/projects/conda/en/latest/user-guide/tasks/manage-virtual.html), allowing for flexible and accurate dependency management. ## Default System Requirements @@ -69,6 +76,11 @@ Example Configuration cuda = "12" # Replace "12" with the specific CUDA version you intend to use ``` +1. Can `system-requirements` enforce a specific CUDA runtime version? + - No. The `system-requirements` field is used to specify the maximum supported CUDA version based on the host’s NVIDIA driver API. +Adding this field ensures that packages depending on `__cuda >= {version}` are resolved correctly. +2. + ### Setting System Requirements environment specific This can be set per `feature` in the `the manifest` file. diff --git a/docs/switching_from/conda.md b/docs/switching_from/conda.md index 615b55370..fd7398513 100644 --- a/docs/switching_from/conda.md +++ b/docs/switching_from/conda.md @@ -58,9 +58,9 @@ bat pixi.toml ``` !!! warn "Never install `pip` with `pixi global`" -Installations with `pixi global` get their own isolated environment. -Installing `pip` with `pixi global` will create a new isolated environment with its own `pip` binary. -Using that `pip` binary will install packages in the `pip` environment, making it unreachable form anywhere as you can't activate it. + Installations with `pixi global` get their own isolated environment. + Installing `pip` with `pixi global` will create a new isolated environment with its own `pip` binary. + Using that `pip` binary will install packages in the `pip` environment, making it unreachable form anywhere as you can't activate it. ## Automated switching From d721ef1e89b13ceae0cfc909080b5b15d367d2a8 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 11:00:34 +0100 Subject: [PATCH 09/35] docs: improve admonitions size --- docs/stylesheets/extra.css | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/docs/stylesheets/extra.css b/docs/stylesheets/extra.css index 66be165cc..70401f858 100644 --- a/docs/stylesheets/extra.css +++ b/docs/stylesheets/extra.css @@ -94,3 +94,7 @@ table code { white-space: nowrap; word-break: keep-all; } + +.md-typeset .admonition { + font-size: 0.75rem; +} From 4d43665a9525de6401069be617975528a5eb0048 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 11:27:26 +0100 Subject: [PATCH 10/35] docs: improve Troubleshooting --- docs/features/pytorch.md | 70 +++++++++++++++++++++++++++++++--------- 1 file changed, 55 insertions(+), 15 deletions(-) diff --git a/docs/features/pytorch.md b/docs/features/pytorch.md index e6e0f05c8..7a74774b2 100644 --- a/docs/features/pytorch.md +++ b/docs/features/pytorch.md @@ -28,7 +28,7 @@ A more indepth explanation of system requirements can be found [here](./system_r ## Installing from Conda-forge You can install PyTorch using the `conda-forge` channel. -These are the community maintained builds of PyTorch. +These are the conda-forge community maintained builds of PyTorch. You can make direct use of the Nvidia provided packages to make sure the packages can work together. !!! note "Windows" @@ -140,28 +140,65 @@ You can tell pixi to use multiple environment for the multiple versions of PyTor ``` ## Troubleshooting +When you had trouble figuring out why your PyTorch installation is not working, please share your solution or tips with the community by creating a **PR** to this documentation. -- You can test the installation with the following command: +#### Testing the `pytorch` installation +You can verify your PyTorch installation with this command: ```shell pixi run python -c "import torch; print(torch.__version__); print(torch.cuda.is_available())" ``` -- You can ask pixi which version of CUDA it finds on your computer with `pixi info`. + +#### Checking the CUDA version of your machine +To check which CUDA version pixi detects on your machine, run: +``` +pixi info +``` +Example output: ``` -> pixi info ... Virtual packages: __unix=0=0 : __linux=6.5.9=0 : __cuda=12.5=0 ... ``` -- Installing `torch` from PyPI and other packages from Conda channels doesn't work. - - The lowest level package in the dependency tree that uses a PyPI package demands that all later packages are also PyPI packages. -- Reasons for broken installations - - Using both `conda-forge` and `pytorch` channels, this can lead to conflicts. Choose one or the other. -- Not installing the GPU version of the `pytorch` package: - - Using [conda-forge](./#installing-from-conda-forge): Use the `system-requirements.cuda` to tell pixi to install the `cuda` packages. And set the `cuda-version` package to the version you want to install. - - Using [PyPI](./#installing-from-pypi): Make sure you are using the correct [index](./#pytorch-index) for the version you want to install. -- Not being able to solve the environment: + +If `__cuda` is missing, you can verify your system’s CUDA version using NVIDIA tools: +```shell +nvidia-smi +``` +To check the version of the CUDA toolkit installed in your environment: +```shell +pixi run nvcc --version +``` + +#### Reasons for broken installations +Broken installations often result from mixing incompatible channels or package sources: + +1. **Mixing Conda Channels** + + Using both conda-forge and the legacy pytorch channel can cause conflicts. + Choose one channel and stick with it to avoid dependency resolution issues. + +2. **Mixing Conda and PyPI Packages** + + If you install PyTorch from pypi, all packages that depend on torch must also come from PyPI. + Mixing Conda and PyPI packages within the same dependency chain leads to conflicts. + +To summarize: + +- Pick one Conda channel (conda-forge or pytorch) to fetch `pytorch` from, and avoid mixing. +- For PyPI installations, ensure all related packages come from PyPI. + +#### GPU version of `pytorch` not installing: + +1. Using [conda-Forge](#installing-from-conda-forge) + - Ensure `system-requirements.cuda` is set to inform pixi to install CUDA-enabled packages. + - Use the `cuda-version` package to pin the desired CUDA version. +2. Using [PyPI](#installing-from-pypi) + - Use the appropriate PyPI index to fetch the correct CUDA-enabled wheels. + +#### Environment Resolution Failures +If you see an error like this: ``` ├─▶ failed to resolve pypi dependencies ╰─▶ Because only the following versions of torch are available: @@ -171,6 +208,9 @@ Virtual packages: __unix=0=0 And because torch==2.5.1+cpu has no wheels with a matching platform tag and you require torch>=2.5.1, we can conclude that your requirements are unsatisfiable. ``` -This error occurs when the ABI tag of the Python version doesn't match the wheels available on PyPI. -Fix this by lowering the `requires-python` or `python` dependency. -At the time of writing Python 3.13 is not supported by many PyTorch-dependent wheels yet. +This happens when the Python ABI tag doesn’t match the available PyPI wheels. + +Solution: + +- Lower the requires-python or python dependency in your configuration. +- At the time of writing, Python 3.13 is unsupported by many PyTorch-related wheels. Use Python 3.12 or below for compatibility. From 92e10ab4c4c353e9ea8db09e6213ca83903a0b30 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 11:29:19 +0100 Subject: [PATCH 11/35] docs: improve Troubleshooting --- docs/features/pytorch.md | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/docs/features/pytorch.md b/docs/features/pytorch.md index 7a74774b2..4441b3039 100644 --- a/docs/features/pytorch.md +++ b/docs/features/pytorch.md @@ -153,6 +153,7 @@ To check which CUDA version pixi detects on your machine, run: ``` pixi info ``` + Example output: ``` ... @@ -166,6 +167,7 @@ If `__cuda` is missing, you can verify your system’s CUDA version using NVIDIA ```shell nvidia-smi ``` + To check the version of the CUDA toolkit installed in your environment: ```shell pixi run nvcc --version @@ -174,12 +176,12 @@ pixi run nvcc --version #### Reasons for broken installations Broken installations often result from mixing incompatible channels or package sources: -1. **Mixing Conda Channels** +1. **Mixing Conda Channels** - Using both conda-forge and the legacy pytorch channel can cause conflicts. - Choose one channel and stick with it to avoid dependency resolution issues. + Using both `conda-forge` and the legacy `pytorch` channel can cause conflicts. + Choose one channel and stick with it to avoid issues in the installed environment. -2. **Mixing Conda and PyPI Packages** +2. **Mixing Conda and PyPI Packages** If you install PyTorch from pypi, all packages that depend on torch must also come from PyPI. Mixing Conda and PyPI packages within the same dependency chain leads to conflicts. From c00c63caa6e9c35345120257585aa55e7ce37478 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 13:23:41 +0100 Subject: [PATCH 12/35] docs: add platform mix note for mac and pypi --- docs/features/pytorch.md | 61 ++++++++++++++++++++++++++++++++++++---- 1 file changed, 56 insertions(+), 5 deletions(-) diff --git a/docs/features/pytorch.md b/docs/features/pytorch.md index 4441b3039..506cf75ce 100644 --- a/docs/features/pytorch.md +++ b/docs/features/pytorch.md @@ -69,6 +69,12 @@ A common use-case is having two environments, one for CUDA machines and one for --8<-- "docs/source_files/pyproject_tomls/pytorch-conda-forge-envs.toml:use-envs" ``` +Running these environments then can be done with the `pixi run` command. +```shell +pixi run --environment cpu python -c "import torch; print(torch.cuda.is_available())" +pixi run -e gpu python -c "import torch; print(torch.cuda.is_available())" +``` + Now you should be able to extend that with your dependencies and tasks. Here are some links to notable packages: @@ -110,8 +116,6 @@ Best to do this per dependency to force the index to be used. --8<-- "docs/source_files/pyproject_tomls/pytorch-pypi.toml:minimal" ``` -In the PyPI world there is no such thing as `system-requirements` so you will have to specify this logic yourself. -Otherwise, like in the previous example it will always install the cuda version. You can tell pixi to use multiple environment for the multiple versions of PyTorch, either `cpu` or `gpu`. === "`pixi.toml`" @@ -123,6 +127,24 @@ You can tell pixi to use multiple environment for the multiple versions of PyTor --8<-- "docs/source_files/pyproject_tomls/pytorch-pypi-envs.toml:multi-env" ``` +Running these environments then can be done with the `pixi run` command. +```shell +pixi run --environment cpu python -c "import torch; print(torch.__version__); print(torch.cuda.is_available())" +pixi run -e gpu python -c "import torch; print(torch.__version__); print(torch.cuda.is_available())" +``` + +### Mixing MacOS and CUDA with `pypi-dependencies` +When using pypi-dependencies, pixi creates a “solve” environment to resolve the PyPI dependencies. +This process involves installing the Conda dependencies first and then resolving the PyPI packages within that environment. + +This can become problematic if you’re on a macOS machine and trying to resolve the CUDA version of PyTorch for Linux or Windows. +Since macOS doesn’t support those environments, the Conda dependencies for CUDA will fail to install, preventing proper resolution. + +**Current Status:** +The pixi maintainers are aware of this limitation and are actively working on a solution to enable cross-platform dependency resolution for such cases. + +In the meantime, you may need to run the resolution process on a machine that supports CUDA, such as a Linux or Windows host. + ## Installing from PyTorch channel !!! warning This depends on the [non-free](https://www.anaconda.com/blog/is-conda-free) `main` channel from Anaconda and mixing it with `conda-forge` can lead to conflicts. @@ -201,6 +223,7 @@ To summarize: #### Environment Resolution Failures If you see an error like this: +**ABI tag mismatch** ``` ├─▶ failed to resolve pypi dependencies ╰─▶ Because only the following versions of torch are available: @@ -210,9 +233,37 @@ If you see an error like this: And because torch==2.5.1+cpu has no wheels with a matching platform tag and you require torch>=2.5.1, we can conclude that your requirements are unsatisfiable. ``` -This happens when the Python ABI tag doesn’t match the available PyPI wheels. +This happens when the Python ABI tag (Application Binary Interface) doesn’t match the available PyPI wheels. Solution: -- Lower the requires-python or python dependency in your configuration. -- At the time of writing, Python 3.13 is unsupported by many PyTorch-related wheels. Use Python 3.12 or below for compatibility. +- Check your Python version and ensure it’s compatible with the PyPI wheels for `torch`. +The ABI tag is based on the Python version is embedded in the wheel filename, e.g. `cp312` for Python 3.12. +- If needed, lower the `requires-python` or `python` version in your configuration. +- For example, as of now, PyTorch doesn’t fully support Python 3.13; use Python 3.12 or earlier. + + +**Platform tag mismatch** +``` +├─▶ failed to resolve pypi dependencies +╰─▶ Because only the following versions of torch are available: + torch<=2.5.1 + torch==2.5.1+cu124 +and torch>=2.5.1 has no wheels with a matching platform tag, we can conclude that torch>=2.5.1,<2.5.1+cu124 cannot be used. +And because you require torch>=2.5.1, we can conclude that your requirements are unsatisfiable. +``` +This occurs when the platform tag doesn’t match the PyPI wheels available to be installed. + +Example Issue: +`torch==2.5.1+cu124` (CUDA 12.4) was attempted on an `osx` machine, but this version is only available for `linux-64` and `win-64`. + +Solution: +- Use the correct PyPI index for your platform: + - CPU-only: Use the cpu index for all platforms. + - CUDA versions: Use cu124 for linux-64 and win-64. + +Correct Indexes: +- CPU: https://download.pytorch.org/whl/cpu +- CUDA 12.4: https://download.pytorch.org/whl/cu124 + +This ensures PyTorch installations are compatible with your system’s platform and Python version. From 156f1fc6445f467eb10303bdddc7b2793acf2281 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 14:25:56 +0100 Subject: [PATCH 13/35] test: test the pytorch documentation examples --- .../pixi_tomls/pytorch-pypi-envs.toml | 3 +- .../pyproject_tomls/pytorch-pypi-envs.toml | 3 +- pixi.lock | 11303 ++++++---------- pixi.toml | 3 +- tests/integration_python/common.py | 10 + tests/integration_python/test_nightly.py | 38 + 6 files changed, 4381 insertions(+), 6979 deletions(-) create mode 100644 tests/integration_python/test_nightly.py diff --git a/docs/source_files/pixi_tomls/pytorch-pypi-envs.toml b/docs/source_files/pixi_tomls/pytorch-pypi-envs.toml index 1adcd1d37..8bb1bbf35 100644 --- a/docs/source_files/pixi_tomls/pytorch-pypi-envs.toml +++ b/docs/source_files/pixi_tomls/pytorch-pypi-envs.toml @@ -2,14 +2,13 @@ [project] channels = ["https://prefix.dev/conda-forge"] name = "pytorch-pypi-envs" -platforms = ["osx-arm64", "linux-64", "win-64"] +platforms = ["linux-64", "win-64"] [dependencies] # We need a python version that is compatible with pytorch python = ">=3.11,<3.13" [feature.gpu] -platforms = ["linux-64", "win-64"] system-requirements = { cuda = "12.0" } [feature.gpu.pypi-dependencies] torch = { version = ">=2.5.1", index = "https://download.pytorch.org/whl/cu124" } diff --git a/docs/source_files/pyproject_tomls/pytorch-pypi-envs.toml b/docs/source_files/pyproject_tomls/pytorch-pypi-envs.toml index 8de09c328..441f6ea79 100644 --- a/docs/source_files/pyproject_tomls/pytorch-pypi-envs.toml +++ b/docs/source_files/pyproject_tomls/pytorch-pypi-envs.toml @@ -6,10 +6,9 @@ requires-python = ">= 3.11,<3.13" [tool.pixi.project] channels = ["https://prefix.dev/conda-forge"] -platforms = ["osx-arm64", "linux-64", "win-64"] +platforms = ["linux-64", "win-64"] [tool.pixi.feature.gpu] -platforms = ["linux-64", "win-64"] system-requirements = { cuda = "12.0" } [tool.pixi.feature.gpu.pypi-dependencies] torch = { version = ">=2.5.1", index = "https://download.pytorch.org/whl/cu124" } diff --git a/pixi.lock b/pixi.lock index 3c1ecd890..57424571a 100644 --- a/pixi.lock +++ b/pixi.lock @@ -1,1512 +1,1549 @@ -version: 5 +version: 6 environments: default: channels: - 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libzlib >=1.2.13,<2.0.0a0 + - ucrt >=10.0.20348.0 + - vc >=14.2,<15 + - vc14_runtime >=14.29.30139 + license: BSD-3-Clause + license_family: BSD + size: 349143 + timestamp: 1714723445995 diff --git a/pixi.toml b/pixi.toml index 829535363..5d4662f4c 100644 --- a/pixi.toml +++ b/pixi.toml @@ -8,7 +8,7 @@ authors = [ description = "Package management made easy!" name = "pixi" # Using faster repodata fetching from our experimental fast channel, which implements https://github.com/conda/ceps/pull/75 -channels = ["https://fast.prefix.dev/conda-forge"] +channels = ["https://prefix.dev/conda-forge"] platforms = ["linux-64", "win-64", "osx-64", "osx-arm64"] [dependencies] @@ -38,6 +38,7 @@ test-slow = """cargo nextest run --workspace --all-targets --retries 2 --feature [feature.pytest.dependencies] filelock = ">=3.16.0,<4" mypy = ">=1.11,<1.12" +py-rattler = ">=0.6.3,<0.10" pytest = "*" pytest-rerunfailures = ">=14.0,<15" pytest-timeout = ">=2.3.1,<3" diff --git a/tests/integration_python/common.py b/tests/integration_python/common.py index 543d1c9c2..fbda4a1e9 100644 --- a/tests/integration_python/common.py +++ b/tests/integration_python/common.py @@ -4,6 +4,8 @@ import subprocess import os +from rattler import Platform + PIXI_VERSION = "0.39.2" @@ -116,3 +118,11 @@ def pixi_dir(project_root: Path) -> Path: def default_env_path(project_root: Path) -> Path: return pixi_dir(project_root).joinpath("envs", "default") + + +def root() -> Path: + return Path(__file__).parent.parent.parent + + +def current_platform() -> str: + return str(Platform.current()) diff --git a/tests/integration_python/test_nightly.py b/tests/integration_python/test_nightly.py new file mode 100644 index 000000000..167ec171c --- /dev/null +++ b/tests/integration_python/test_nightly.py @@ -0,0 +1,38 @@ +# These are test that are to be run nightly as they are very slow. +# They are not part of the normal test suite. +from pathlib import Path + +from .common import verify_cli_command, ExitCode, root, current_platform +import pytest + + +@pytest.mark.slow +@pytest.mark.parametrize( + "manifest", + [ + pytest.param(manifest, id=manifest.stem) + for manifest in root().joinpath("docs/source_files/").glob("**/pytorch-*.toml") + ], +) +def test_pytorch_documentation_examples( + pixi: Path, tmp_pixi_workspace: Path, manifest: Path +) -> None: + # Copy the manifest to the tmp workspace + toml = manifest.read_text() + toml_name = "pyproject.toml" if "pyproject_tomls" in str(manifest) else "pixi.toml" + manifest = tmp_pixi_workspace.joinpath(toml_name) + manifest.write_text(toml) + + # Only solve if the platform is supported + if ( + current_platform() + in verify_cli_command( + [pixi, "project", "platform", "ls", "--manifest-path", manifest], + ExitCode.SUCCESS, + ).stdout + ): + # Run the installation + verify_cli_command( + [pixi, "install", "--manifest-path", manifest], + ExitCode.SUCCESS, + ) From b3b7c52039d4b029ef215e7217597107d848f0f1 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 14:47:31 +0100 Subject: [PATCH 14/35] ci: add extra slow tests to run only on main or label --- .github/workflows/ci.yml | 4 ++++ pixi.toml | 3 +++ pytest.ini | 3 ++- .../{test_nightly.py => test_documentation.py} | 5 ++--- 4 files changed, 11 insertions(+), 4 deletions(-) rename tests/integration_python/{test_nightly.py => test_documentation.py} (88%) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 87ae42857..118e98830 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -436,6 +436,10 @@ jobs: - name: Run integration tests run: pixi run --locked test-integration-ci + - name: Run long running integration tests + if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'extra_slow') }} + run: pixi run --locked test-integration-ci -m "extra_slow" + - name: Test examples run: bash tests/scripts/test-examples.sh diff --git a/pixi.toml b/pixi.toml index 5d4662f4c..4a607a3e5 100644 --- a/pixi.toml +++ b/pixi.toml @@ -52,6 +52,9 @@ test-common-wheels = { cmd = "pytest --numprocesses=auto tests/wheel_tests/", de ] } test-common-wheels-ci = { cmd = "pytest --numprocesses=auto --verbose tests/wheel_tests/" } test-integration-ci = "pytest --numprocesses=auto --durations=10 --verbose --timeout=300 tests/integration_python" +test-integration-extra-slow = { cmd = "pytest --numprocesses=auto --durations=10 --timeout=1200 tests/integration_python -m ''", depends-on = [ + "build-release", +] } test-integration-fast = { cmd = "pytest -m 'not slow' --pixi-build=debug --numprocesses=auto --durations=10 --timeout=300 tests/integration_python", depends-on = [ "build-debug", ] } diff --git a/pytest.ini b/pytest.ini index d149a23a5..47f331350 100644 --- a/pytest.ini +++ b/pytest.ini @@ -1,6 +1,7 @@ [pytest] -addopts = --basetemp=pytest-temp +addopts = --basetemp=pytest-temp -m "not extra_slow" tmp_path_retention_policy = failed testpaths = tests/integration_python markers = slow: marks tests as slow (deselect with '-m "not slow"') + extra_slow: marks tests as nightly (select with '-m "extra_slow"') diff --git a/tests/integration_python/test_nightly.py b/tests/integration_python/test_documentation.py similarity index 88% rename from tests/integration_python/test_nightly.py rename to tests/integration_python/test_documentation.py index 167ec171c..8a2014a00 100644 --- a/tests/integration_python/test_nightly.py +++ b/tests/integration_python/test_documentation.py @@ -1,12 +1,11 @@ -# These are test that are to be run nightly as they are very slow. -# They are not part of the normal test suite. +# These test are not part of the normal test suite and are only run on main or with the `-m "extra_slow"` flag. from pathlib import Path from .common import verify_cli_command, ExitCode, root, current_platform import pytest -@pytest.mark.slow +@pytest.mark.extra_slow @pytest.mark.parametrize( "manifest", [ From e9bd5acff7a26003d81b09e26caabfc221b084b7 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 14:51:10 +0100 Subject: [PATCH 15/35] lint --- docs/source_files/pixi_tomls/pytorch-pypi.toml | 1 - 1 file changed, 1 deletion(-) diff --git a/docs/source_files/pixi_tomls/pytorch-pypi.toml b/docs/source_files/pixi_tomls/pytorch-pypi.toml index c3576b3b9..6265146f9 100644 --- a/docs/source_files/pixi_tomls/pytorch-pypi.toml +++ b/docs/source_files/pixi_tomls/pytorch-pypi.toml @@ -17,4 +17,3 @@ torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/ torch = { version = ">=2.5.1", index = "https://download.pytorch.org/whl/cpu" } torchvision = { version = ">=0.20.1", index = "https://download.pytorch.org/whl/cpu" } # --8<-- [end:minimal] - From fc6d29484f8fb978679cb21daca57dc37f6ded30 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 14:52:14 +0100 Subject: [PATCH 16/35] ci: add long running tests to multiple platforms --- .github/workflows/ci.yml | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 118e98830..ec5d1b279 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -382,6 +382,10 @@ jobs: working-directory: ${{ env.PIXI_WORKSPACE }} run: pixi run --locked test-integration-ci + - name: Run long running integration tests + if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'extra_slow') }} + run: pixi run --locked test-integration-ci -m "extra_slow" + - name: Test examples shell: bash working-directory: ${{ env.PIXI_WORKSPACE }} @@ -491,6 +495,10 @@ jobs: - name: Run integration tests run: pixi run --locked test-integration-ci + - name: Run long running integration tests + if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'extra_slow') }} + run: pixi run --locked test-integration-ci -m "extra_slow" + - name: "Test examples" run: bash tests/scripts/test-examples.sh From 44b8b6644e06404ac0d8e333908e8b62819830ff Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 15:11:42 +0100 Subject: [PATCH 17/35] ci: manage timeout only in CI --- pixi.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pixi.toml b/pixi.toml index 4a607a3e5..5607876a7 100644 --- a/pixi.toml +++ b/pixi.toml @@ -51,7 +51,7 @@ test-common-wheels = { cmd = "pytest --numprocesses=auto tests/wheel_tests/", de "build-release", ] } test-common-wheels-ci = { cmd = "pytest --numprocesses=auto --verbose tests/wheel_tests/" } -test-integration-ci = "pytest --numprocesses=auto --durations=10 --verbose --timeout=300 tests/integration_python" +test-integration-ci = "pytest --numprocesses=auto --durations=10 --verbose tests/integration_python" test-integration-extra-slow = { cmd = "pytest --numprocesses=auto --durations=10 --timeout=1200 tests/integration_python -m ''", depends-on = [ "build-release", ] } From 075588ad5e66fef74ed527023f1bb59bd2eda8ee Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 15:29:23 +0100 Subject: [PATCH 18/35] ci: typo in label name --- .github/workflows/ci.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index ec5d1b279..1e59f5e75 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -383,7 +383,7 @@ jobs: run: pixi run --locked test-integration-ci - name: Run long running integration tests - if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'extra_slow') }} + if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} run: pixi run --locked test-integration-ci -m "extra_slow" - name: Test examples @@ -441,7 +441,7 @@ jobs: run: pixi run --locked test-integration-ci - name: Run long running integration tests - if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'extra_slow') }} + if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} run: pixi run --locked test-integration-ci -m "extra_slow" - name: Test examples @@ -496,7 +496,7 @@ jobs: run: pixi run --locked test-integration-ci - name: Run long running integration tests - if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'extra_slow') }} + if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} run: pixi run --locked test-integration-ci -m "extra_slow" - name: "Test examples" From bd9515b61e00f1db1762d85de6b25035b5e22702 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 16:12:34 +0100 Subject: [PATCH 19/35] ci debug labels --- .github/workflows/ci.yml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 1e59f5e75..121bd097a 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -495,6 +495,10 @@ jobs: - name: Run integration tests run: pixi run --locked test-integration-ci + - name: Debug labels + if: github.event_name == 'pull_request' + run: echo '${{ toJson(github.event.pull_request.labels) }}' + - name: Run long running integration tests if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} run: pixi run --locked test-integration-ci -m "extra_slow" From 55bd68a6a9cf002252133b118f15952253627144 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 16:39:17 +0100 Subject: [PATCH 20/35] remove label debug --- .github/workflows/ci.yml | 4 ---- 1 file changed, 4 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 121bd097a..1e59f5e75 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -495,10 +495,6 @@ jobs: - name: Run integration tests run: pixi run --locked test-integration-ci - - name: Debug labels - if: github.event_name == 'pull_request' - run: echo '${{ toJson(github.event.pull_request.labels) }}' - - name: Run long running integration tests if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} run: pixi run --locked test-integration-ci -m "extra_slow" From 0491de3c7377b2a781cb2b34aa1365e4c9740fb7 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 16:55:02 +0100 Subject: [PATCH 21/35] improve cuda-version docs --- docs/features/pytorch.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/features/pytorch.md b/docs/features/pytorch.md index 506cf75ce..34b27f807 100644 --- a/docs/features/pytorch.md +++ b/docs/features/pytorch.md @@ -45,8 +45,8 @@ You can make direct use of the Nvidia provided packages to make sure the package ``` To deliberately install a specific version of the `cuda` packages you can depend on the `cuda-version` package which will then be interpreted by the other packages during resolution. -The `cuda-version` package constraints the version of other `cuda` packages, like `cudatoolkit` and it is depended on by some package to make sure the correct version is installed. - +The `cuda-version` package constraints the version of the `__cuda` virtual package and `cudatoolkit` package. +This ensures that the correct version of the `cudatoolkit` package is installed and the tree of dependencies is resolved correctly. === "`pixi.toml`" ```toml title="Add cuda version to the conda-forge pytorch installation" From 3bf81bb80ef6963710672cb87ff0c502cdbed98d Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Tue, 17 Dec 2024 17:33:35 +0100 Subject: [PATCH 22/35] add win to pytorch channel --- docs/source_files/pixi_tomls/pytorch-from-pytorch-channel.toml | 2 +- .../pyproject_tomls/pytorch-from-pytorch-channel.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/source_files/pixi_tomls/pytorch-from-pytorch-channel.toml b/docs/source_files/pixi_tomls/pytorch-from-pytorch-channel.toml index 5be4f9b81..d1ce93e9e 100644 --- a/docs/source_files/pixi_tomls/pytorch-from-pytorch-channel.toml +++ b/docs/source_files/pixi_tomls/pytorch-from-pytorch-channel.toml @@ -3,7 +3,7 @@ name = "pytorch-from-pytorch-channel" # `main` is not free! It's a paid channel for organizations over 200 people. channels = ["main", "nvidia", "pytorch"] -platforms = ["osx-arm64", "linux-64"] +platforms = ["osx-arm64", "linux-64", "win-64"] [feature.gpu.system-requirements] cuda = "12.0" diff --git a/docs/source_files/pyproject_tomls/pytorch-from-pytorch-channel.toml b/docs/source_files/pyproject_tomls/pytorch-from-pytorch-channel.toml index 19485c959..b7592ba70 100644 --- a/docs/source_files/pyproject_tomls/pytorch-from-pytorch-channel.toml +++ b/docs/source_files/pyproject_tomls/pytorch-from-pytorch-channel.toml @@ -7,7 +7,7 @@ version = "0.1.0" [tool.pixi.project] # `main` is not free! It's a paid channel for organizations over 200 people. channels = ["main", "nvidia", "pytorch"] -platforms = ["osx-arm64", "linux-64"] +platforms = ["osx-arm64", "linux-64", "win-64"] [tool.pixi.feature.gpu.system-requirements] cuda = "12.0" From 946ef3bd60745a7ab0abfef493129a4371000770 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Wed, 18 Dec 2024 10:09:06 +0100 Subject: [PATCH 23/35] debug ci test --- .github/workflows/ci.yml | 6 +++--- tests/integration_python/common.py | 2 +- tests/integration_python/test_documentation.py | 5 +++++ 3 files changed, 9 insertions(+), 4 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 1e59f5e75..de8111c34 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -492,13 +492,13 @@ jobs: - name: Install pixi run: pixi install -v - - name: Run integration tests - run: pixi run --locked test-integration-ci - - name: Run long running integration tests if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} run: pixi run --locked test-integration-ci -m "extra_slow" + - name: Run integration tests + run: pixi run --locked test-integration-ci + - name: "Test examples" run: bash tests/scripts/test-examples.sh diff --git a/tests/integration_python/common.py b/tests/integration_python/common.py index fbda4a1e9..ecc837d0f 100644 --- a/tests/integration_python/common.py +++ b/tests/integration_python/common.py @@ -121,7 +121,7 @@ def default_env_path(project_root: Path) -> Path: def root() -> Path: - return Path(__file__).parent.parent.parent + return Path(__file__).parents[2] def current_platform() -> str: diff --git a/tests/integration_python/test_documentation.py b/tests/integration_python/test_documentation.py index 8a2014a00..f4be356de 100644 --- a/tests/integration_python/test_documentation.py +++ b/tests/integration_python/test_documentation.py @@ -22,6 +22,11 @@ def test_pytorch_documentation_examples( manifest = tmp_pixi_workspace.joinpath(toml_name) manifest.write_text(toml) + verify_cli_command( + [pixi, "info"], + ExitCode.SUCCESS, + ) + # Only solve if the platform is supported if ( current_platform() From 9657dd534f371ff4aeaf4d316650242f87ccc070 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Wed, 18 Dec 2024 10:33:42 +0100 Subject: [PATCH 24/35] more debugging --- .github/workflows/ci.yml | 14 +++++++------- tests/integration_python/test_documentation.py | 4 +++- 2 files changed, 10 insertions(+), 8 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index de8111c34..45cce03f2 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -378,14 +378,14 @@ jobs: working-directory: ${{ env.PIXI_WORKSPACE }} run: pixi install -v - - name: Run integration tests - working-directory: ${{ env.PIXI_WORKSPACE }} - run: pixi run --locked test-integration-ci - - name: Run long running integration tests if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} run: pixi run --locked test-integration-ci -m "extra_slow" + - name: Run integration tests + working-directory: ${{ env.PIXI_WORKSPACE }} + run: pixi run --locked test-integration-ci + - name: Test examples shell: bash working-directory: ${{ env.PIXI_WORKSPACE }} @@ -437,13 +437,13 @@ jobs: - name: Install pixi run: pixi install -v - - name: Run integration tests - run: pixi run --locked test-integration-ci - - name: Run long running integration tests if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} run: pixi run --locked test-integration-ci -m "extra_slow" + - name: Run integration tests + run: pixi run --locked test-integration-ci + - name: Test examples run: bash tests/scripts/test-examples.sh diff --git a/tests/integration_python/test_documentation.py b/tests/integration_python/test_documentation.py index f4be356de..d63947bd9 100644 --- a/tests/integration_python/test_documentation.py +++ b/tests/integration_python/test_documentation.py @@ -14,7 +14,9 @@ ], ) def test_pytorch_documentation_examples( - pixi: Path, tmp_pixi_workspace: Path, manifest: Path + manifest: Path, + pixi: Path, + tmp_pixi_workspace: Path, ) -> None: # Copy the manifest to the tmp workspace toml = manifest.read_text() From 5b3db8164fb4bd00e961a9c684bfd030b271a997 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Wed, 18 Dec 2024 10:57:37 +0100 Subject: [PATCH 25/35] fix: ci and move around the tests --- .github/workflows/ci.yml | 27 ++++++++++++++------------- 1 file changed, 14 insertions(+), 13 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 45cce03f2..690b72d6e 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -372,14 +372,11 @@ jobs: name: pixi-windows-x86_64-${{ github.sha }} path: ${{ env.PIXI_WORKSPACE }}/${{ env.TARGET_RELEASE }} - name: Verify pixi installation - run: pixi --version - - - name: Install pixi - working-directory: ${{ env.PIXI_WORKSPACE }} - run: pixi install -v + run: pixi info - name: Run long running integration tests if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} + working-directory: ${{ env.PIXI_WORKSPACE }} run: pixi run --locked test-integration-ci -m "extra_slow" - name: Run integration tests @@ -391,6 +388,10 @@ jobs: working-directory: ${{ env.PIXI_WORKSPACE }} run: bash tests/scripts/test-examples.sh + - name: Install pixi + working-directory: ${{ env.PIXI_WORKSPACE }} + run: pixi install -v + - name: "Checkout Deltares/Ribasim" uses: actions/checkout@v4 with: @@ -432,10 +433,7 @@ jobs: chmod a+x ${{ env.TARGET_RELEASE }}/pixi echo "${{ env.TARGET_RELEASE }}" >> $GITHUB_PATH - name: Verify pixi installation - run: pixi --version - - - name: Install pixi - run: pixi install -v + run: pixi info - name: Run long running integration tests if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} @@ -450,6 +448,9 @@ jobs: - name: Test export run: pixi run --locked test-export + - name: Install pixi + run: pixi install -v + - name: "Checkout Deltares/Ribasim" uses: actions/checkout@v4 with: @@ -487,10 +488,7 @@ jobs: chmod a+x ${{ env.TARGET_RELEASE }}/pixi echo "${{ env.TARGET_RELEASE }}" >> $GITHUB_PATH - name: Verify pixi installation - run: pixi --version - - - name: Install pixi - run: pixi install -v + run: pixi info - name: Run long running integration tests if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} @@ -505,6 +503,9 @@ jobs: - name: "Test export" run: pixi run --locked test-export + - name: Install pixi + run: pixi install -v + - name: "Checkout nerfstudio-project/nerfstudio" uses: actions/checkout@v4 with: From aac34bec7f2ab8940bd72cd72f858640f3712530 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Wed, 18 Dec 2024 15:06:11 +0100 Subject: [PATCH 26/35] ci: clean cache on windows to avoid running out of it --- .github/workflows/ci.yml | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 690b72d6e..4f1fcdf08 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -377,7 +377,10 @@ jobs: - name: Run long running integration tests if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} working-directory: ${{ env.PIXI_WORKSPACE }} - run: pixi run --locked test-integration-ci -m "extra_slow" + run: | + pixi run --locked test-integration-ci -m "extra_slow" + # Clean the cache to avoid running out of space + pixi clean cache --conda - name: Run integration tests working-directory: ${{ env.PIXI_WORKSPACE }} From b548079a9c90803c9020058286b37363e0e43c0f Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Wed, 18 Dec 2024 15:14:17 +0100 Subject: [PATCH 27/35] Update tests/integration_python/common.py Co-authored-by: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> --- tests/integration_python/common.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/integration_python/common.py b/tests/integration_python/common.py index 50270c495..7e6599260 100644 --- a/tests/integration_python/common.py +++ b/tests/integration_python/common.py @@ -120,7 +120,7 @@ def default_env_path(project_root: Path) -> Path: return pixi_dir(project_root).joinpath("envs", "default") -def root() -> Path: +def repo_root() -> Path: return Path(__file__).parents[2] From 93af9f3241a847476caf0caac38cbea90da67175 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Wed, 18 Dec 2024 15:16:31 +0100 Subject: [PATCH 28/35] fix: typo --- tests/integration_python/test_documentation.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tests/integration_python/test_documentation.py b/tests/integration_python/test_documentation.py index d63947bd9..f8e19ccdb 100644 --- a/tests/integration_python/test_documentation.py +++ b/tests/integration_python/test_documentation.py @@ -1,7 +1,7 @@ # These test are not part of the normal test suite and are only run on main or with the `-m "extra_slow"` flag. from pathlib import Path -from .common import verify_cli_command, ExitCode, root, current_platform +from .common import verify_cli_command, ExitCode, repo_root, current_platform import pytest @@ -10,7 +10,7 @@ "manifest", [ pytest.param(manifest, id=manifest.stem) - for manifest in root().joinpath("docs/source_files/").glob("**/pytorch-*.toml") + for manifest in repo_root().joinpath("docs/source_files/").glob("**/pytorch-*.toml") ], ) def test_pytorch_documentation_examples( From 4c3845acf4087bcee9a07303a96f464d42e820ec Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Thu, 19 Dec 2024 11:21:57 +0100 Subject: [PATCH 29/35] test: move and add clean --- tests/integration_python/test_docs.py | 52 ++++++++++++++++--- .../integration_python/test_documentation.py | 44 ---------------- 2 files changed, 46 insertions(+), 50 deletions(-) delete mode 100644 tests/integration_python/test_documentation.py diff --git a/tests/integration_python/test_docs.py b/tests/integration_python/test_docs.py index 60bbd9129..d7cb75b4b 100644 --- a/tests/integration_python/test_docs.py +++ b/tests/integration_python/test_docs.py @@ -1,18 +1,16 @@ import pytest from pathlib import Path import shutil - -from .common import ExitCode, verify_cli_command import sys +from .common import verify_cli_command, ExitCode, repo_root, current_platform + -pytestmark = pytest.mark.skipif( +@pytest.mark.skipif( sys.platform.startswith("win"), reason="Enable again as soon as pixi build supports windows builds with multiple platforms", ) - - -@pytest.mark.slow +@pytest.mark.extra_slow def test_doc_pixi_projects(pixi: Path, tmp_pixi_workspace: Path, doc_pixi_projects: Path) -> None: # TODO: Setting the cache dir shouldn't be necessary! env = {"PIXI_CACHE_DIR": str(tmp_pixi_workspace.joinpath("pixi_cache"))} @@ -26,3 +24,45 @@ def test_doc_pixi_projects(pixi: Path, tmp_pixi_workspace: Path, doc_pixi_projec verify_cli_command( [pixi, "run", "--manifest-path", manifest, "start"], ExitCode.SUCCESS, env=env ) + + +@pytest.mark.extra_slow +@pytest.mark.parametrize( + "manifest", + [ + pytest.param(manifest, id=manifest.stem) + for manifest in repo_root().joinpath("docs/source_files/").glob("**/pytorch-*.toml") + ], +) +def test_pytorch_documentation_examples( + manifest: Path, + pixi: Path, + tmp_pixi_workspace: Path, +) -> None: + # Copy the manifest to the tmp workspace + toml = manifest.read_text() + toml_name = "pyproject.toml" if "pyproject_tomls" in str(manifest) else "pixi.toml" + manifest = tmp_pixi_workspace.joinpath(toml_name) + manifest.write_text(toml) + + verify_cli_command( + [pixi, "info"], + ExitCode.SUCCESS, + ) + + # Only solve if the platform is supported + if ( + current_platform() + in verify_cli_command( + [pixi, "project", "platform", "ls", "--manifest-path", manifest], + ExitCode.SUCCESS, + ).stdout + ): + # Run the installation + verify_cli_command( + [pixi, "install", "--manifest-path", manifest], + ExitCode.SUCCESS, + ) + + # Cleanup the workspace + shutil.rmtree(tmp_pixi_workspace) diff --git a/tests/integration_python/test_documentation.py b/tests/integration_python/test_documentation.py deleted file mode 100644 index f8e19ccdb..000000000 --- a/tests/integration_python/test_documentation.py +++ /dev/null @@ -1,44 +0,0 @@ -# These test are not part of the normal test suite and are only run on main or with the `-m "extra_slow"` flag. -from pathlib import Path - -from .common import verify_cli_command, ExitCode, repo_root, current_platform -import pytest - - -@pytest.mark.extra_slow -@pytest.mark.parametrize( - "manifest", - [ - pytest.param(manifest, id=manifest.stem) - for manifest in repo_root().joinpath("docs/source_files/").glob("**/pytorch-*.toml") - ], -) -def test_pytorch_documentation_examples( - manifest: Path, - pixi: Path, - tmp_pixi_workspace: Path, -) -> None: - # Copy the manifest to the tmp workspace - toml = manifest.read_text() - toml_name = "pyproject.toml" if "pyproject_tomls" in str(manifest) else "pixi.toml" - manifest = tmp_pixi_workspace.joinpath(toml_name) - manifest.write_text(toml) - - verify_cli_command( - [pixi, "info"], - ExitCode.SUCCESS, - ) - - # Only solve if the platform is supported - if ( - current_platform() - in verify_cli_command( - [pixi, "project", "platform", "ls", "--manifest-path", manifest], - ExitCode.SUCCESS, - ).stdout - ): - # Run the installation - verify_cli_command( - [pixi, "install", "--manifest-path", manifest], - ExitCode.SUCCESS, - ) From 45804be3d53c75b2d482add0176ba19c255f49d1 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Thu, 19 Dec 2024 13:38:41 +0100 Subject: [PATCH 30/35] make sure pixi clean is run --- .github/workflows/ci.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 4f1fcdf08..235b48def 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -378,6 +378,7 @@ jobs: if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} working-directory: ${{ env.PIXI_WORKSPACE }} run: | + set -e pixi run --locked test-integration-ci -m "extra_slow" # Clean the cache to avoid running out of space pixi clean cache --conda From 6540ceca62c55990ff3a403f888a38f98c47b0d1 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Thu, 19 Dec 2024 13:59:59 +0100 Subject: [PATCH 31/35] make ci use bash --- .github/workflows/ci.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 235b48def..bb7642b95 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -382,6 +382,7 @@ jobs: pixi run --locked test-integration-ci -m "extra_slow" # Clean the cache to avoid running out of space pixi clean cache --conda + shell: bash - name: Run integration tests working-directory: ${{ env.PIXI_WORKSPACE }} From 7b8d8b71f0205439137719a4b02e4b38ddf997c2 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Thu, 19 Dec 2024 14:37:15 +0100 Subject: [PATCH 32/35] split slow and fast tests --- .github/workflows/ci.yml | 111 +++++++++++++++++++++++++++++++-------- pixi.toml | 9 ++-- 2 files changed, 94 insertions(+), 26 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index bb7642b95..17ef375cc 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -351,8 +351,8 @@ jobs: # Run integration tests on important platforms # - test-integration-windows-x86_64: - timeout-minutes: 30 + test-pytest-windows-x86_64: + timeout-minutes: 10 name: pytest integration | windows x86_64 runs-on: windows-latest needs: build-binary-windows-x86_64 @@ -374,56 +374,123 @@ jobs: - name: Verify pixi installation run: pixi info - - name: Run long running integration tests - if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} - working-directory: ${{ env.PIXI_WORKSPACE }} + - name: Run pytests + run: pixi run --locked test-integration-ci + + test-pytest-macos-aarch64: + timeout-minutes: 10 + name: pytest integration | macos aarch64 + runs-on: macos-14 + needs: build-binary-macos-aarch64 + env: + TARGET_RELEASE: "${{ github.workspace }}/target/pixi/release" + steps: + - uses: actions/checkout@v4 + - name: Download binary from build + uses: actions/download-artifact@v4 + with: + name: pixi-macos-aarch64-${{ github.sha }} + path: ${{ env.TARGET_RELEASE }} + - name: Setup unix binary, add to github path run: | - set -e - pixi run --locked test-integration-ci -m "extra_slow" - # Clean the cache to avoid running out of space - pixi clean cache --conda - shell: bash + chmod a+x ${{ env.TARGET_RELEASE }}/pixi + echo "${{ env.TARGET_RELEASE }}" >> $GITHUB_PATH + - name: Verify pixi installation + run: pixi info - name: Run integration tests - working-directory: ${{ env.PIXI_WORKSPACE }} run: pixi run --locked test-integration-ci + test-pytest-linux-x86_64: + timeout-minutes: 10 + name: pytest integration | linux x86_64 + runs-on: 8core_ubuntu_latest_runner + needs: build-binary-linux-x86_64 + env: + TARGET_RELEASE: "${{ github.workspace }}/target/pixi/release" + steps: + - uses: actions/checkout@v4 + - name: Download binary from build + uses: actions/download-artifact@v4 + with: + name: pixi-linux-x86_64-${{ github.sha }} + path: ${{ env.TARGET_RELEASE }} + - name: Setup unix binary, add to github path + run: | + chmod a+x ${{ env.TARGET_RELEASE }}/pixi + echo "${{ env.TARGET_RELEASE }}" >> $GITHUB_PATH + - name: Verify pixi installation + run: pixi info + + - name: Run integration tests + run: pixi run --locked test-integration-ci + + test-integration-windows-x86_64: + timeout-minutes: 30 + name: Integration tests | windows x86_64 + runs-on: windows-latest + needs: build-binary-windows-x86_64 + if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} + env: + TARGET_RELEASE: "target/pixi/release" + steps: + - uses: actions/checkout@v4 + - name: Create Dev Drive using ReFS + run: ${{ github.workspace }}/.github/workflows/setup-dev-drive.ps1 + - name: Copy Git Repo to Dev Drive + run: | + Copy-Item -Path "${{ github.workspace }}" -Destination "${{ env.PIXI_WORKSPACE }}" -Recurse + echo "${{ env.PIXI_WORKSPACE }}/${{ env.TARGET_RELEASE }}" | Out-File -Append -Encoding utf8 -FilePath $env:GITHUB_PATH + - name: Download binary from build + uses: actions/download-artifact@v4 + with: + name: pixi-windows-x86_64-${{ github.sha }} + path: ${{ env.PIXI_WORKSPACE }}/${{ env.TARGET_RELEASE }} + - name: Verify pixi installation + run: pixi info + + - name: Run long running integration tests + working-directory: ${{ env.PIXI_WORKSPACE }} + run: pixi run --locked test-integration-extra-slow-ci + - name: Test examples shell: bash working-directory: ${{ env.PIXI_WORKSPACE }} run: bash tests/scripts/test-examples.sh - - name: Install pixi + - name: Install pixi's pixi project working-directory: ${{ env.PIXI_WORKSPACE }} - run: pixi install -v + run: pixi install -vv - - name: "Checkout Deltares/Ribasim" + - name: Checkout Deltares/Ribasim uses: actions/checkout@v4 with: repository: Deltares/Ribasim path: ribasim - - name: "Copy Deltares/Ribasim to Dev Drive" + - name: Copy Deltares/Ribasim to Dev Drive run: Copy-Item -Path "${{ github.workspace }}/ribasim" -Destination "${{ env.PIXI_WORKSPACE }}/ribasim" -Recurse - - name: "Install Deltares/Ribasim" + - name: Install Deltares/Ribasim run: pixi install working-directory: ${{ env.PIXI_WORKSPACE }}/ribasim - - name: "Checkout quantco/polarify" + - name: Checkout quantco/polarify uses: actions/checkout@v4 with: repository: quantco/polarify path: polarify - - name: "Copy quantco/polarify to Dev Drive" + - name: Copy quantco/polarify to Dev Drive run: Copy-Item -Path "${{ github.workspace }}/polarify" -Destination "${{ env.PIXI_WORKSPACE }}/polarify" -Recurse - - name: "Install quantco/polarify" + - name: Install quantco/polarify run: pixi install working-directory: ${{ env.PIXI_WORKSPACE }}/polarify + test-integration-macos-aarch64: timeout-minutes: 30 name: pytest integration | macos aarch64 runs-on: macos-14 needs: build-binary-macos-aarch64 + if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} env: TARGET_RELEASE: "${{ github.workspace }}/target/pixi/release" steps: @@ -441,8 +508,7 @@ jobs: run: pixi info - name: Run long running integration tests - if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} - run: pixi run --locked test-integration-ci -m "extra_slow" + run: pixi run --locked test-integration-extra-slow-ci - name: Run integration tests run: pixi run --locked test-integration-ci @@ -476,9 +542,10 @@ jobs: test-integration-linux-x86_64: timeout-minutes: 30 - name: pytest integration | linux x86_64 + name: Integration tests | linux x86_64 runs-on: 8core_ubuntu_latest_runner needs: build-binary-linux-x86_64 + if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} env: TARGET_RELEASE: "${{ github.workspace }}/target/pixi/release" steps: diff --git a/pixi.toml b/pixi.toml index 75647d328..ffb9e51ae 100644 --- a/pixi.toml +++ b/pixi.toml @@ -51,14 +51,15 @@ test-common-wheels = { cmd = "pytest --numprocesses=auto tests/wheel_tests/", de "build-release", ] } test-common-wheels-ci = { cmd = "pytest --numprocesses=auto --verbose tests/wheel_tests/" } -test-integration-ci = "pytest --numprocesses=auto --durations=10 --verbose tests/integration_python" -test-integration-extra-slow = { cmd = "pytest --numprocesses=auto --durations=10 --timeout=1200 tests/integration_python -m ''", depends-on = [ +test-integration-ci = "pytest --numprocesses=auto --durations=0 --timeout=100 --verbose tests/integration_python" +test-integration-extra-slow = { cmd = "pytest --numprocesses=auto --durations=0 --timeout=300 tests/integration_python -m ''", depends-on = [ "build-release", ] } -test-integration-fast = { cmd = "pytest -m 'not slow' --pixi-build=debug --numprocesses=auto --durations=10 --timeout=300 tests/integration_python", depends-on = [ +test-integration-extra-slow-ci = "pytest --numprocesses=auto --durations=0 --timeout=300 tests/integration_python -m 'extra_slow'" +test-integration-fast = { cmd = "pytest -m 'not slow' --pixi-build=debug --numprocesses=auto --durations=0 --timeout=100 tests/integration_python", depends-on = [ "build-debug", ] } -test-integration-slow = { cmd = "pytest --numprocesses=auto --durations=10 --timeout=300 tests/integration_python", depends-on = [ +test-integration-slow = { cmd = "pytest --numprocesses=auto --durations=0 --timeout=100 tests/integration_python", depends-on = [ "build-release", ] } # pass the file to run as an argument to the task From 866c25c957924e660942ac32be3521a5f38e45ec Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Thu, 19 Dec 2024 14:50:24 +0100 Subject: [PATCH 33/35] split downstream from tests --- .github/workflows/ci.yml | 137 ++++++++++++++++++++++++++++++--------- 1 file changed, 105 insertions(+), 32 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 17ef375cc..fa4cf76a3 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -372,9 +372,11 @@ jobs: name: pixi-windows-x86_64-${{ github.sha }} path: ${{ env.PIXI_WORKSPACE }}/${{ env.TARGET_RELEASE }} - name: Verify pixi installation + working-directory: ${{ env.PIXI_WORKSPACE }} run: pixi info - name: Run pytests + working-directory: ${{ env.PIXI_WORKSPACE }} run: pixi run --locked test-integration-ci test-pytest-macos-aarch64: @@ -446,7 +448,9 @@ jobs: with: name: pixi-windows-x86_64-${{ github.sha }} path: ${{ env.PIXI_WORKSPACE }}/${{ env.TARGET_RELEASE }} + - name: Verify pixi installation + working-directory: ${{ env.PIXI_WORKSPACE }} run: pixi info - name: Run long running integration tests @@ -458,6 +462,100 @@ jobs: working-directory: ${{ env.PIXI_WORKSPACE }} run: bash tests/scripts/test-examples.sh + + test-integration-macos-aarch64: + timeout-minutes: 30 + name: pytest integration | macos aarch64 + runs-on: macos-14 + needs: build-binary-macos-aarch64 + if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} + env: + TARGET_RELEASE: "${{ github.workspace }}/target/pixi/release" + steps: + - uses: actions/checkout@v4 + - name: Download binary from build + uses: actions/download-artifact@v4 + with: + name: pixi-macos-aarch64-${{ github.sha }} + path: ${{ env.TARGET_RELEASE }} + - name: Setup unix binary, add to github path + run: | + chmod a+x ${{ env.TARGET_RELEASE }}/pixi + echo "${{ env.TARGET_RELEASE }}" >> $GITHUB_PATH + - name: Verify pixi installation + run: pixi info + + - name: Run long running integration tests + run: pixi run --locked test-integration-extra-slow-ci + + - name: Run integration tests + run: pixi run --locked test-integration-ci + + - name: Test examples + run: bash tests/scripts/test-examples.sh + + - name: Test export + run: pixi run --locked test-export + + test-integration-linux-x86_64: + timeout-minutes: 30 + name: Integration tests | linux x86_64 + runs-on: 8core_ubuntu_latest_runner + needs: build-binary-linux-x86_64 + if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} + env: + TARGET_RELEASE: "${{ github.workspace }}/target/pixi/release" + steps: + - uses: actions/checkout@v4 + - name: Download binary from build + uses: actions/download-artifact@v4 + with: + name: pixi-linux-x86_64-${{ github.sha }} + path: ${{ env.TARGET_RELEASE }} + - name: Setup unix binary, add to github path + run: | + chmod a+x ${{ env.TARGET_RELEASE }}/pixi + echo "${{ env.TARGET_RELEASE }}" >> $GITHUB_PATH + - name: Verify pixi installation + run: pixi info + + - name: Run long running integration tests + if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} + run: pixi run --locked test-integration-ci -m "extra_slow" + + - name: Run integration tests + run: pixi run --locked test-integration-ci + + - name: "Test examples" + run: bash tests/scripts/test-examples.sh + + - name: "Test export" + run: pixi run --locked test-export + + test-downstream-windows-x86_64: + timeout-minutes: 30 + name: Downstream tests | windows x86_64 + runs-on: windows-latest + needs: build-binary-windows-x86_64 + if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} + env: + TARGET_RELEASE: "target/pixi/release" + steps: + - uses: actions/checkout@v4 + - name: Create Dev Drive using ReFS + run: ${{ github.workspace }}/.github/workflows/setup-dev-drive.ps1 + - name: Copy Git Repo to Dev Drive + run: | + Copy-Item -Path "${{ github.workspace }}" -Destination "${{ env.PIXI_WORKSPACE }}" -Recurse + echo "${{ env.PIXI_WORKSPACE }}/${{ env.TARGET_RELEASE }}" | Out-File -Append -Encoding utf8 -FilePath $env:GITHUB_PATH + - name: Download binary from build + uses: actions/download-artifact@v4 + with: + name: pixi-windows-x86_64-${{ github.sha }} + path: ${{ env.PIXI_WORKSPACE }}/${{ env.TARGET_RELEASE }} + - name: Verify pixi installation + run: pixi info + - name: Install pixi's pixi project working-directory: ${{ env.PIXI_WORKSPACE }} run: pixi install -vv @@ -485,9 +583,9 @@ jobs: working-directory: ${{ env.PIXI_WORKSPACE }}/polarify - test-integration-macos-aarch64: - timeout-minutes: 30 - name: pytest integration | macos aarch64 + test-downstream-macos-aarch64: + timeout-minutes: 15 + name: Downstream tests | macos aarch64 runs-on: macos-14 needs: build-binary-macos-aarch64 if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} @@ -507,18 +605,6 @@ jobs: - name: Verify pixi installation run: pixi info - - name: Run long running integration tests - run: pixi run --locked test-integration-extra-slow-ci - - - name: Run integration tests - run: pixi run --locked test-integration-ci - - - name: Test examples - run: bash tests/scripts/test-examples.sh - - - name: Test export - run: pixi run --locked test-export - - name: Install pixi run: pixi install -v @@ -540,9 +626,9 @@ jobs: run: pixi install working-directory: polarify - test-integration-linux-x86_64: - timeout-minutes: 30 - name: Integration tests | linux x86_64 + test-downstream-linux-x86_64: + timeout-minutes: 15 + name: Downstream tests | linux x86_64 runs-on: 8core_ubuntu_latest_runner needs: build-binary-linux-x86_64 if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} @@ -562,20 +648,8 @@ jobs: - name: Verify pixi installation run: pixi info - - name: Run long running integration tests - if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} - run: pixi run --locked test-integration-ci -m "extra_slow" - - - name: Run integration tests - run: pixi run --locked test-integration-ci - - - name: "Test examples" - run: bash tests/scripts/test-examples.sh - - - name: "Test export" - run: pixi run --locked test-export - - name: Install pixi + working-directory: ${{ env.PIXI_WORKSPACE }} run: pixi install -v - name: "Checkout nerfstudio-project/nerfstudio" @@ -604,7 +678,6 @@ jobs: - name: "Install quantco/polarify" run: pixi install working-directory: polarify - # # Install a number of common wheels on some platforms # From 3971addc44506ced070e0112d31362018e68a059 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Thu, 19 Dec 2024 14:50:43 +0100 Subject: [PATCH 34/35] undo removing in test --- tests/integration_python/test_docs.py | 8 -------- 1 file changed, 8 deletions(-) diff --git a/tests/integration_python/test_docs.py b/tests/integration_python/test_docs.py index d7cb75b4b..a1d0ea5f7 100644 --- a/tests/integration_python/test_docs.py +++ b/tests/integration_python/test_docs.py @@ -45,11 +45,6 @@ def test_pytorch_documentation_examples( manifest = tmp_pixi_workspace.joinpath(toml_name) manifest.write_text(toml) - verify_cli_command( - [pixi, "info"], - ExitCode.SUCCESS, - ) - # Only solve if the platform is supported if ( current_platform() @@ -63,6 +58,3 @@ def test_pytorch_documentation_examples( [pixi, "install", "--manifest-path", manifest], ExitCode.SUCCESS, ) - - # Cleanup the workspace - shutil.rmtree(tmp_pixi_workspace) From 3482962b10dc371698efd946375deb637f3b6146 Mon Sep 17 00:00:00 2001 From: Ruben Arts Date: Thu, 19 Dec 2024 15:06:07 +0100 Subject: [PATCH 35/35] ci: improve names --- .github/workflows/ci.yml | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index fa4cf76a3..8b958004b 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -353,7 +353,7 @@ jobs: test-pytest-windows-x86_64: timeout-minutes: 10 - name: pytest integration | windows x86_64 + name: Pytest | windows x86_64 runs-on: windows-latest needs: build-binary-windows-x86_64 env: @@ -381,7 +381,7 @@ jobs: test-pytest-macos-aarch64: timeout-minutes: 10 - name: pytest integration | macos aarch64 + name: Pytest | macos aarch64 runs-on: macos-14 needs: build-binary-macos-aarch64 env: @@ -405,7 +405,7 @@ jobs: test-pytest-linux-x86_64: timeout-minutes: 10 - name: pytest integration | linux x86_64 + name: Pytest | linux x86_64 runs-on: 8core_ubuntu_latest_runner needs: build-binary-linux-x86_64 env: @@ -465,7 +465,7 @@ jobs: test-integration-macos-aarch64: timeout-minutes: 30 - name: pytest integration | macos aarch64 + name: Integration tests | macos aarch64 runs-on: macos-14 needs: build-binary-macos-aarch64 if: ${{ github.ref == 'refs/heads/main' || contains(github.event.pull_request.labels.*.name, 'test:extra_slow') }} @@ -683,7 +683,7 @@ jobs: # test-common-wheels-linux-x86_64: - name: "test wheel installation | linux x86_64" + name: Wheel Tests | linux x86_64 needs: - build-binary-linux-x86_64 uses: ./.github/workflows/test_common_wheels.yml @@ -693,7 +693,7 @@ jobs: runs-on: 8core_ubuntu_latest_runner test-common-wheels-windows-x86_64: - name: "test wheel installation | windows x86_64" + name: Wheel Tests | windows x86_64 needs: - build-binary-windows-x86_64 uses: ./.github/workflows/test_common_wheels.yml @@ -703,7 +703,7 @@ jobs: runs-on: windows-latest test-common-wheels-macos-aarch64: - name: "test wheel installation | macos aarch64" + name: Wheel Tests | macos aarch64 needs: - build-binary-macos-aarch64 uses: ./.github/workflows/test_common_wheels.yml