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Python from uv cache interferes with Python in pixi environment during CMake's FindPython #2749

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guru-desh opened this issue Dec 20, 2024 · 0 comments
Open
2 tasks done

Python from uv cache interferes with Python in pixi environment during CMake's FindPython #2749

guru-desh opened this issue Dec 20, 2024 · 0 comments
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🐞 bug Something isn't working

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@guru-desh
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Checks

  • I have checked that this issue has not already been reported.

  • I have confirmed this bug exists on the latest version of pixi, using pixi --version.

Reproducible example

This is detailed in the issue, but it's a slight variant from the pixi pybind11 example

Issue description

I found a bug relating to the virtual environment found during FindPython in cmake inside pixi.

Reproducible example:

Take the pixi pybind11 example, and make the following modifications:

Updated pyproject.toml:

[build-system]
build-backend = "scikit_build_core.build"
requires = ["scikit-build-core", "pybind11"]

[project]
classifiers = [
  "Programming Language :: Python :: 3",
  "Programming Language :: Python :: 3.6",
  "Programming Language :: Python :: 3.7",
  "Programming Language :: Python :: 3.8",
  "Programming Language :: Python :: 3.9",
  "Programming Language :: Python :: 3.10",
  "Programming Language :: Python :: 3.11",
]
description = "A simple pybind11 example"
name = "mysum"
requires-python = ">=3.7"
version = "0.1.0"

[tool.scikit-build]
cmake.source-dir = "."
sdist.exclude = [".pixi"]
wheel.packages = ["mysum"]
logging.level = "DEBUG"

[tool.pixi.project]
channels = ["conda-forge"]
platforms = ["linux-64", "osx-64", "osx-arm64", "win-64"]

[tool.pixi.dependencies]
pybind11 = ">=2.13.6,<3"

[tool.pixi.feature.build.dependencies]
cmake = ">=3.15,<4"
cxx-compiler = ">=1.8.0,<2"
make = ">=4.4.1,<5"
ninja = ">=1.12.1,<2"
scikit-build-core = ">=0.10.7,<0.11"
uv = ">=0.4.25,<0.5"
numpy = ">=1.21.2,<2"

[tool.pixi.feature.build.tasks.build]
cmd = ["uv", "build"]

[tool.pixi.environments]
build = ["build"]

This adds NumPy as a build dependency + added some additional scikit-build-core properties.

Updated CMakeLists.txt:

cmake_minimum_required(VERSION 3.15...3.29)

project(${SKBUILD_PROJECT_NAME} VERSION ${SKBUILD_PROJECT_VERSION} LANGUAGES CXX)

find_package(Python REQUIRED COMPONENTS Interpreter Development.Module)

message(STATUS "Python_EXECUTABLE: ${Python_EXECUTABLE}")
message(STATUS "Python_VERSION: ${Python_VERSION}")

set(PYBIND11_NEWPYTHON ON)
find_package(pybind11 CONFIG REQUIRED)

file(GLOB SOURCES "src/*.cpp")

pybind11_add_module(${PROJECT_NAME} ${SOURCES})

install(TARGETS ${PROJECT_NAME} DESTINATION .)

This uses FindPython to try and find the Python interpreter.

Here's the output when running pixi run build:

✨ Pixi task (build in build): uv build
Building source distribution...
*** scikit-build-core 0.10.7 (sdist)
Building wheel from source distribution...
2024-12-19 23:29:17,467 - scikit_build_core - INFO - RUN: /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/cmake -E capabilities
2024-12-19 23:29:17,481 - scikit_build_core - INFO - CMake version: 3.30.5
*** scikit-build-core 0.10.7 using CMake 3.30.5 (wheel)
2024-12-19 23:29:17,486 - scikit_build_core - DEBUG - MACOSX_DEPLOYMENT_TARGET not set, using 14.0
2024-12-19 23:29:17,486 - scikit_build_core - INFO - Build directory: /private/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/build
2024-12-19 23:29:17,488 - scikit_build_core - WARNING - No license files found, set wheel.license-files to [] to suppress this warning
*** Configuring CMake...
2024-12-19 23:29:17,493 - scikit_build_core - DEBUG - SITE_PACKAGES: /Users/gururaj/.cache/uv/builds-v0/.tmpelSfmU/lib/python3.12/site-packages
2024-12-19 23:29:17,493 - scikit_build_core - DEBUG - Env CMAKE_ARGS: ['-DCMAKE_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar', '-DCMAKE_CXX_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar', '-DCMAKE_C_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar', '-DCMAKE_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib', '-DCMAKE_CXX_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib', '-DCMAKE_C_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib', '-DCMAKE_LINKER=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ld', '-DCMAKE_STRIP=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-strip', '-DCMAKE_INSTALL_NAME_TOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-install_name_tool', '-DCMAKE_LIBTOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-libtool', '-DCMAKE_BUILD_TYPE=Release', '-DCMAKE_OSX_SYSROOT=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk']
2024-12-19 23:29:17,493 - scikit_build_core - WARNING - Unsupported CMAKE_ARGS ignored: -DCMAKE_BUILD_TYPE=Release
2024-12-19 23:29:17,510 - scikit_build_core - DEBUG - Default generator: Ninja
2024-12-19 23:29:17,510 - scikit_build_core - INFO - RUN: /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/ninja --version
2024-12-19 23:29:17,515 - scikit_build_core - INFO - Ninja version: 1.12.1
2024-12-19 23:29:17,515 - scikit_build_core - DEBUG - CMAKE_GENERATOR: Using ninja: /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/ninja
2024-12-19 23:29:17,516 - scikit_build_core - DEBUG - libdir/(ld)library: /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/lib/libpython3.12.a is not a real file!
2024-12-19 23:29:17,516 - scikit_build_core - DEBUG - Can't find a Python library, got libdir=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/lib, ldlibrary=libpython3.12.a, multiarch=darwin, masd=None
2024-12-19 23:29:17,518 - scikit_build_core - DEBUG - /var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/build/CMakeInit.txt:
  set(SKBUILD [===[2]===] CACHE STRING "" FORCE)
  set(SKBUILD_CORE_VERSION [===[0.10.7]===] CACHE STRING "" FORCE)
  set(SKBUILD_PROJECT_NAME [===[mysum]===] CACHE STRING "" FORCE)
  set(SKBUILD_PROJECT_VERSION [===[0.1.0]===] CACHE STRING "" FORCE)
  set(SKBUILD_PROJECT_VERSION_FULL [===[0.1.0]===] CACHE STRING "" FORCE)
  set(PYTHON_EXECUTABLE [===[/Users/gururaj/.cache/uv/builds-v0/.tmpelSfmU/bin/python]===] CACHE STRING "" FORCE)
  set(PYTHON_INCLUDE_DIR [===[/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include/python3.12]===] CACHE PATH "" FORCE)
  set(Python_EXECUTABLE [===[/Users/gururaj/.cache/uv/builds-v0/.tmpelSfmU/bin/python]===] CACHE STRING "" FORCE)
  set(Python_ROOT_DIR [===[/Users/gururaj/.cache/uv/builds-v0/.tmpelSfmU]===] CACHE STRING "" FORCE)
  set(Python_INCLUDE_DIR [===[/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include/python3.12]===] CACHE PATH "" FORCE)
  set(Python_FIND_REGISTRY [===[NEVER]===] CACHE STRING "" FORCE)
  set(Python3_EXECUTABLE [===[/Users/gururaj/.cache/uv/builds-v0/.tmpelSfmU/bin/python]===] CACHE STRING "" FORCE)
  set(Python3_ROOT_DIR [===[/Users/gururaj/.cache/uv/builds-v0/.tmpelSfmU]===] CACHE STRING "" FORCE)
  set(Python3_INCLUDE_DIR [===[/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include/python3.12]===] CACHE PATH "" FORCE)
  set(Python3_FIND_REGISTRY [===[NEVER]===] CACHE STRING "" FORCE)
  set(SKBUILD_SOABI [===[cpython-312-darwin]===] CACHE STRING "" FORCE)
  set(SKBUILD_SABI_COMPONENT [===[]===] CACHE STRING "" FORCE)
  set(SKBUILD_PLATLIB_DIR [===[/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/wheel/platlib]===] CACHE PATH "" FORCE)
  set(SKBUILD_DATA_DIR [===[/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/wheel/data]===] CACHE PATH "" FORCE)
  set(SKBUILD_HEADERS_DIR [===[/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/wheel/headers]===] CACHE PATH "" FORCE)
  set(SKBUILD_SCRIPTS_DIR [===[/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/wheel/scripts]===] CACHE PATH "" FORCE)
  set(SKBUILD_NULL_DIR [===[/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/wheel/null]===] CACHE PATH "" FORCE)
  set(SKBUILD_METADATA_DIR [===[/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/wheel/metadata]===] CACHE PATH "" FORCE)
  set(SKBUILD_STATE [===[wheel]===] CACHE STRING "" FORCE)
  set(CMAKE_PREFIX_PATH [===[/Users/gururaj/.cache/uv/builds-v0/.tmpelSfmU/lib/python3.12/site-packages]===] CACHE PATH "" FORCE)
  set(CMAKE_FIND_ROOT_PATH_MODE_PACKAGE "BOTH" CACHE PATH "")
2024-12-19 23:29:17,518 - scikit_build_core - DEBUG - Env CMAKE_ARGS: ['-DCMAKE_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar', '-DCMAKE_CXX_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar', '-DCMAKE_C_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar', '-DCMAKE_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib', '-DCMAKE_CXX_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib', '-DCMAKE_C_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib', '-DCMAKE_LINKER=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ld', '-DCMAKE_STRIP=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-strip', '-DCMAKE_INSTALL_NAME_TOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-install_name_tool', '-DCMAKE_LIBTOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-libtool', '-DCMAKE_BUILD_TYPE=Release', '-DCMAKE_OSX_SYSROOT=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk']
2024-12-19 23:29:17,518 - scikit_build_core - WARNING - Unsupported CMAKE_ARGS ignored: -DCMAKE_BUILD_TYPE=Release
2024-12-19 23:29:17,519 - scikit_build_core - DEBUG - RUNENV:
  AR='arm64-apple-darwin20.0.0-ar'
  AS='arm64-apple-darwin20.0.0-as'
  BUILD='arm64-apple-darwin20.0.0'
  CC='arm64-apple-darwin20.0.0-clang'
  CC_FOR_BUILD='/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-clang'
  CFLAGS='-ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include'
  CHECKSYMS='arm64-apple-darwin20.0.0-checksyms'
  CLANG='arm64-apple-darwin20.0.0-clang'
  CLANGXX='arm64-apple-darwin20.0.0-clang++'
  CLICOLOR_FORCE='1'
  CMAKE_ARGS='-DCMAKE_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar -DCMAKE_CXX_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar -DCMAKE_C_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar -DCMAKE_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib -DCMAKE_C_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib -DCMAKE_LINKER=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ld -DCMAKE_STRIP=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-strip -DCMAKE_INSTALL_NAME_TOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-install_name_tool -DCMAKE_LIBTOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-libtool -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk'
  CMAKE_GENERATOR='Ninja'
  CMAKE_PREFIX_PATH=':/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build'
  COLORTERM='truecolor'
  COMMAND_MODE='unix2003'
  CONDA_CHANGEPS1='false'
  CONDA_DEFAULT_ENV='mysum:build'
  CONDA_EXE='/opt/anaconda3/bin/conda'
  CONDA_PREFIX='/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build'
  CONDA_PROMPT_MODIFIER=''
  CONDA_PYTHON_EXE='/opt/anaconda3/bin/python'
  CONDA_SHLVL='1'
  CONDA_TOOLCHAIN_BUILD='arm64-apple-darwin20.0.0'
  CONDA_TOOLCHAIN_HOST='arm64-apple-darwin20.0.0'
  CPPFLAGS='-D_FORTIFY_SOURCE=2 -isystem /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include'
  CXX='arm64-apple-darwin20.0.0-clang++'
  CXXFLAGS='-ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include'
  CXX_FOR_BUILD='/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-clang++'
  DEBUG_CFLAGS='-ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include'
  DEBUG_CXXFLAGS='-ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -Og -g -Wall -Wextra -isystem /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include'
  GEM_HOME='/Users/gururaj/.gem/ruby/3.1.3'
  GEM_PATH='/Users/gururaj/.gem/ruby/3.1.3:/Users/gururaj/.rubies/ruby-3.1.3/lib/ruby/gems/3.1.0'
  GEM_ROOT='/Users/gururaj/.rubies/ruby-3.1.3/lib/ruby/gems/3.1.0'
  GIT_ASKPASS='/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/git/dist/askpass.sh'
  HOME='/Users/gururaj'
  HOMEBREW_CELLAR='/opt/homebrew/Cellar'
  HOMEBREW_PREFIX='/opt/homebrew'
  HOMEBREW_REPOSITORY='/opt/homebrew'
  HOST='arm64-apple-darwin20.0.0'
  INFOPATH='/opt/homebrew/share/info:/opt/homebrew/share/info:'
  INIT_CWD='/Users/gururaj/Test/pixi/examples/pybind11'
  INSTALL_NAME_TOOL='arm64-apple-darwin20.0.0-install_name_tool'
  LANG='en_US.UTF-8'
  LD='arm64-apple-darwin20.0.0-ld'
  LDFLAGS='-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/lib -L/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/lib'
  LDFLAGS_LD='-headerpad_max_install_names -dead_strip_dylibs -rpath /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/lib -L/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/lib'
  LIBTOOL='arm64-apple-darwin20.0.0-libtool'
  LIPO='arm64-apple-darwin20.0.0-lipo'
  LOGNAME='gururaj'
  LaunchInstanceID='82D866B8-7933-4034-8BF7-285C71A4E885'
  MESON_ARGS='-Dbuildtype=release'
  MallocNanoZone='0'
  NM='arm64-apple-darwin20.0.0-nm'
  NMEDIT='arm64-apple-darwin20.0.0-nmedit'
  OBJC='arm64-apple-darwin20.0.0-clang'
  OBJC_DISABLE_INITIALIZE_FORK_SAFETY='YES'
  OBJC_FOR_BUILD='/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-clang'
  OLDPWD='/Users/gururaj/Test/pixi/examples/pybind11'
  ORIGINAL_XDG_CURRENT_DESKTOP='undefined'
  OTOOL='arm64-apple-darwin20.0.0-otool'
  PAGESTUFF='arm64-apple-darwin20.0.0-pagestuff'
  PATH='/Users/gururaj/.cache/uv/builds-v0/.tmpelSfmU/bin:/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin:/Users/gururaj/.pixi/bin:/opt/homebrew/opt/qt@5/bin:/opt/homebrew/opt/openjdk@17/bin:/opt/homebrew/opt/openjdk/bin:/Users/gururaj/.detaspace/bin:/Users/gururaj/.gem/ruby/3.1.3/bin:/Users/gururaj/.rubies/ruby-3.1.3/lib/ruby/gems/3.1.0/bin:/Users/gururaj/.rubies/ruby-3.1.3/bin:/opt/homebrew/bin/youtube-dl:/usr/local/homebrew/opt/[email protected]/bin:/opt/homebrew/opt/[email protected]/bin:/opt/homebrew/opt/unzip/bin:/Users/gururaj/.local/bin:/Users/gururaj/bin:/usr/local/bin:/opt/homebrew/opt/openjdk/bin:/opt/homebrew/bin:/opt/homebrew/sbin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Library/Apple/usr/bin:/Library/TeX/texbin:/Applications/Wireshark.app/Contents/MacOS:/usr/local/share/dotnet:~/.dotnet/tools:/Library/Frameworks/Mono.framework/Versions/Current/Commands:/Users/gururaj/.pixi/bin:/opt/homebrew/opt/qt@5/bin:/opt/homebrew/opt/openjdk@17/bin:/opt/homebrew/opt/openjdk/bin:/Users/gururaj/.detaspace/bin:/opt/homebrew/bin/youtube-dl:/usr/local/homebrew/opt/[email protected]/bin:/opt/homebrew/opt/[email protected]/bin:/opt/homebrew/opt/unzip/bin:/opt/anaconda3/bin:/opt/anaconda3/condabin:/Users/gururaj/.local/bin:/Users/gururaj/bin:/Users/gururaj/Library/Application Support/Code/User/globalStorage/github.copilot-chat/debugCommand'
  PIXI_ENVIRONMENT_NAME='build'
  PIXI_ENVIRONMENT_PLATFORMS='win-64,linux-64,osx-64,osx-arm64'
  PIXI_EXE='/opt/homebrew/bin/pixi'
  PIXI_IN_SHELL='1'
  PIXI_PROJECT_MANIFEST='/Users/gururaj/Test/pixi/examples/pybind11/pyproject.toml'
  PIXI_PROJECT_NAME='mysum'
  PIXI_PROJECT_ROOT='/Users/gururaj/Test/pixi/examples/pybind11'
  PIXI_PROJECT_VERSION='0.1.0'
  PIXI_PROMPT='(mysum:build) '
  PWD='/Users/gururaj/Test/pixi/examples/pybind11'
  PYTHONIOENCODING='utf-8:backslashreplace'
  RANLIB='arm64-apple-darwin20.0.0-ranlib'
  REDO_PREBINDING='arm64-apple-darwin20.0.0-redo_prebinding'
  RUBYOPT=''
  RUBY_ENGINE='ruby'
  RUBY_ROOT='/Users/gururaj/.rubies/ruby-3.1.3'
  RUBY_VERSION='3.1.3'
  SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk'
  SECURITYSESSIONID='186b0'
  SEGEDIT='arm64-apple-darwin20.0.0-segedit'
  SEG_ADDR_TABLE='arm64-apple-darwin20.0.0-seg_addr_table'
  SEG_HACK='arm64-apple-darwin20.0.0-seg_hack'
  SHELL='/bin/zsh'
  SHLVL='3'
  SIZE='arm64-apple-darwin20.0.0-size'
  SSH_AUTH_SOCK='/private/tmp/com.apple.launchd.9h7Z2pdIv9/Listeners'
  SSH_SOCKET_DIR='~/.ssh'
  STRINGS='arm64-apple-darwin20.0.0-strings'
  STRIP='arm64-apple-darwin20.0.0-strip'
  TERM='xterm-256color'
  TERM_PROGRAM='vscode'
  TERM_PROGRAM_VERSION='1.96.0'
  TMPDIR='/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/'
  USER='gururaj'
  USER_ZDOTDIR='/Users/gururaj'
  VIRTUAL_ENV='/Users/gururaj/.cache/uv/builds-v0/.tmpelSfmU'
  VSCODE_GIT_ASKPASS_EXTRA_ARGS=''
  VSCODE_GIT_ASKPASS_MAIN='/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/git/dist/askpass-main.js'
  VSCODE_GIT_ASKPASS_NODE='/Applications/Visual Studio Code.app/Contents/Frameworks/Code Helper (Plugin).app/Contents/MacOS/Code Helper (Plugin)'
  VSCODE_GIT_IPC_HANDLE='/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/vscode-git-11bd5dcec3.sock'
  VSCODE_INJECTION='1'
  WARP_HONOR_PS1='0'
  WARP_IS_LOCAL_SHELL_SESSION='1'
  WARP_USE_SSH_WRAPPER='1'
  XML_CATALOG_FILES='file:///Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/etc/xml/catalog file:///etc/xml/catalog'
  XPC_FLAGS='0x0'
  XPC_SERVICE_NAME='0'
  ZDOTDIR='/Users/gururaj'
  _='/opt/homebrew/bin/pixi'
  _CE_CONDA=''
  _CE_M=''
  _CONDA_PYTHON_SYSCONFIGDATA_NAME='_sysconfigdata_arm64_apple_darwin20_0_0'
  __CFBundleIdentifier='com.microsoft.VSCode'
  __CF_USER_TEXT_ENCODING='0x1F5:0x0:0x0'
  ac_cv_func_malloc_0_nonnull='yes'
  ac_cv_func_realloc_0_nonnull='yes'
  build_alias='arm64-apple-darwin20.0.0'
  host_alias='arm64-apple-darwin20.0.0'
2024-12-19 23:29:17,519 - scikit_build_core - INFO - RUN: /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/cmake -S. -B/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/build -DCMAKE_BUILD_TYPE:STRING=Release -C/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/build/CMakeInit.txt -DCMAKE_INSTALL_PREFIX=/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/wheel/platlib -DCMAKE_MAKE_PROGRAM=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/ninja -DCMAKE_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar -DCMAKE_CXX_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar -DCMAKE_C_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar -DCMAKE_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib -DCMAKE_C_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib -DCMAKE_LINKER=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ld -DCMAKE_STRIP=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-strip -DCMAKE_INSTALL_NAME_TOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-install_name_tool -DCMAKE_LIBTOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-libtool -DCMAKE_OSX_SYSROOT=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
loading initial cache file /var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/build/CMakeInit.txt
-- The CXX compiler identification is Clang 17.0.6
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Python: /Users/gururaj/.cache/uv/builds-v0/.tmpelSfmU/bin/python (found version "3.12.8") found components: Interpreter Development.Module
-- Python_EXECUTABLE: /Users/gururaj/.cache/uv/builds-v0/.tmpelSfmU/bin/python
-- Python_VERSION: 3.12.8
-- Performing Test HAS_FLTO_THIN
-- Performing Test HAS_FLTO_THIN - Success
-- Found pybind11: /Users/gururaj/.cache/uv/builds-v0/.tmpelSfmU/lib/python3.12/site-packages/pybind11/include (found version "2.13.6")
-- Configuring done (0.7s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_C_COMPILER_AR
    CMAKE_C_COMPILER_RANLIB
    CMAKE_LIBTOOL


-- Build files have been written to: /var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/build
2024-12-19 23:29:18,199 - scikit_build_core - DEBUG - Env CMAKE_ARGS: ['-DCMAKE_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar', '-DCMAKE_CXX_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar', '-DCMAKE_C_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar', '-DCMAKE_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib', '-DCMAKE_CXX_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib', '-DCMAKE_C_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib', '-DCMAKE_LINKER=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ld', '-DCMAKE_STRIP=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-strip', '-DCMAKE_INSTALL_NAME_TOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-install_name_tool', '-DCMAKE_LIBTOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-libtool', '-DCMAKE_BUILD_TYPE=Release', '-DCMAKE_OSX_SYSROOT=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk']
2024-12-19 23:29:18,199 - scikit_build_core - WARNING - Unsupported CMAKE_ARGS ignored: -DCMAKE_BUILD_TYPE=Release
*** Building project with Ninja...
2024-12-19 23:29:18,199 - scikit_build_core - DEBUG - RUNENV - changes since last run only:
  
2024-12-19 23:29:18,199 - scikit_build_core - INFO - RUN: /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/cmake --build /var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/build
[1/2] Building CXX object CMakeFiles/mysum.dir/src/main.cpp.o
[2/2] Linking CXX shared module mysum.cpython-312-darwin.so
/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-strip: warning: changes being made to the file will invalidate the code signature in: /private/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/build/mysum.cpython-312-darwin.so
[cctools-port]: generating fake signature for '/private/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/build/mysum.cpython-312-darwin.so.strip'
*** Installing project into wheel...
2024-12-19 23:29:20,736 - scikit_build_core - DEBUG - RUNENV - changes since last run only:
  
2024-12-19 23:29:20,736 - scikit_build_core - INFO - RUN: /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/cmake --install /var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/build --prefix /var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/wheel/platlib --strip
-- Install configuration: "Release"
-- Installing: /var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/wheel/platlib/./mysum.cpython-312-darwin.so
/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-strip: warning: changes being made to the file will invalidate the code signature in: /private/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/wheel/platlib/mysum.cpython-312-darwin.so
[cctools-port]: generating fake signature for '/private/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmpqnorc386/wheel/platlib/mysum.cpython-312-darwin.so.strip'
*** Making wheel...
*** Created mysum-0.1.0-cp312-cp312-macosx_14_0_arm64.whl
Successfully built dist/mysum-0.1.0.tar.gz and dist/mysum-0.1.0-cp312-cp312-macosx_14_0_arm64.whl

Although the build is successful, the important part to focus on is the following:

-- Found Python: /Users/gururaj/.cache/uv/builds-v0/.tmpelSfmU/bin/python (found version "3.12.8") found components: Interpreter Development.Module
-- Python_EXECUTABLE: /Users/gururaj/.cache/uv/builds-v0/.tmpelSfmU/bin/python

Instead of finding the Python inside .pixi/envs/build, it finds a Python from uv cache. This is a problem because this Python won't have the appropriate libraries.

To make the build fail, edit the find_package line in the CMakeLists.txt to the following:

find_package(Python REQUIRED COMPONENTS Interpreter Development.Module NumPy)

The build fails since it cannot find the NumPy Include Directories:

✨ Pixi task (build in build): uv build
Building source distribution...
*** scikit-build-core 0.10.7 (sdist)
Building wheel from source distribution...
2024-12-19 23:40:08,905 - scikit_build_core - INFO - RUN: /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/cmake -E capabilities
2024-12-19 23:40:08,925 - scikit_build_core - INFO - CMake version: 3.30.5
*** scikit-build-core 0.10.7 using CMake 3.30.5 (wheel)
2024-12-19 23:40:08,937 - scikit_build_core - DEBUG - MACOSX_DEPLOYMENT_TARGET not set, using 14.0
2024-12-19 23:40:08,937 - scikit_build_core - INFO - Build directory: /private/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmptj9zdnsa/build
2024-12-19 23:40:08,940 - scikit_build_core - WARNING - No license files found, set wheel.license-files to [] to suppress this warning
*** Configuring CMake...
2024-12-19 23:40:08,950 - scikit_build_core - DEBUG - SITE_PACKAGES: /Users/gururaj/.cache/uv/builds-v0/.tmpoqLrrk/lib/python3.12/site-packages
2024-12-19 23:40:08,950 - scikit_build_core - DEBUG - Env CMAKE_ARGS: ['-DCMAKE_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar', '-DCMAKE_CXX_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar', '-DCMAKE_C_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar', '-DCMAKE_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib', '-DCMAKE_CXX_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib', '-DCMAKE_C_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib', '-DCMAKE_LINKER=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ld', '-DCMAKE_STRIP=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-strip', '-DCMAKE_INSTALL_NAME_TOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-install_name_tool', '-DCMAKE_LIBTOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-libtool', '-DCMAKE_BUILD_TYPE=Release', '-DCMAKE_OSX_SYSROOT=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk']
2024-12-19 23:40:08,950 - scikit_build_core - WARNING - Unsupported CMAKE_ARGS ignored: -DCMAKE_BUILD_TYPE=Release
2024-12-19 23:40:08,970 - scikit_build_core - DEBUG - Default generator: Ninja
2024-12-19 23:40:08,971 - scikit_build_core - INFO - RUN: /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/ninja --version
2024-12-19 23:40:08,975 - scikit_build_core - INFO - Ninja version: 1.12.1
2024-12-19 23:40:08,975 - scikit_build_core - DEBUG - CMAKE_GENERATOR: Using ninja: /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/ninja
2024-12-19 23:40:08,975 - scikit_build_core - DEBUG - libdir/(ld)library: /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/lib/libpython3.12.a is not a real file!
2024-12-19 23:40:08,975 - scikit_build_core - DEBUG - Can't find a Python library, got libdir=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/lib, ldlibrary=libpython3.12.a, multiarch=darwin, masd=None
2024-12-19 23:40:08,978 - scikit_build_core - DEBUG - /var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmptj9zdnsa/build/CMakeInit.txt:
  set(SKBUILD [===[2]===] CACHE STRING "" FORCE)
  set(SKBUILD_CORE_VERSION [===[0.10.7]===] CACHE STRING "" FORCE)
  set(SKBUILD_PROJECT_NAME [===[mysum]===] CACHE STRING "" FORCE)
  set(SKBUILD_PROJECT_VERSION [===[0.1.0]===] CACHE STRING "" FORCE)
  set(SKBUILD_PROJECT_VERSION_FULL [===[0.1.0]===] CACHE STRING "" FORCE)
  set(PYTHON_EXECUTABLE [===[/Users/gururaj/.cache/uv/builds-v0/.tmpoqLrrk/bin/python]===] CACHE STRING "" FORCE)
  set(PYTHON_INCLUDE_DIR [===[/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include/python3.12]===] CACHE PATH "" FORCE)
  set(Python_EXECUTABLE [===[/Users/gururaj/.cache/uv/builds-v0/.tmpoqLrrk/bin/python]===] CACHE STRING "" FORCE)
  set(Python_ROOT_DIR [===[/Users/gururaj/.cache/uv/builds-v0/.tmpoqLrrk]===] CACHE STRING "" FORCE)
  set(Python_INCLUDE_DIR [===[/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include/python3.12]===] CACHE PATH "" FORCE)
  set(Python_FIND_REGISTRY [===[NEVER]===] CACHE STRING "" FORCE)
  set(Python3_EXECUTABLE [===[/Users/gururaj/.cache/uv/builds-v0/.tmpoqLrrk/bin/python]===] CACHE STRING "" FORCE)
  set(Python3_ROOT_DIR [===[/Users/gururaj/.cache/uv/builds-v0/.tmpoqLrrk]===] CACHE STRING "" FORCE)
  set(Python3_INCLUDE_DIR [===[/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include/python3.12]===] CACHE PATH "" FORCE)
  set(Python3_FIND_REGISTRY [===[NEVER]===] CACHE STRING "" FORCE)
  set(SKBUILD_SOABI [===[cpython-312-darwin]===] CACHE STRING "" FORCE)
  set(SKBUILD_SABI_COMPONENT [===[]===] CACHE STRING "" FORCE)
  set(SKBUILD_PLATLIB_DIR [===[/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmptj9zdnsa/wheel/platlib]===] CACHE PATH "" FORCE)
  set(SKBUILD_DATA_DIR [===[/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmptj9zdnsa/wheel/data]===] CACHE PATH "" FORCE)
  set(SKBUILD_HEADERS_DIR [===[/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmptj9zdnsa/wheel/headers]===] CACHE PATH "" FORCE)
  set(SKBUILD_SCRIPTS_DIR [===[/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmptj9zdnsa/wheel/scripts]===] CACHE PATH "" FORCE)
  set(SKBUILD_NULL_DIR [===[/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmptj9zdnsa/wheel/null]===] CACHE PATH "" FORCE)
  set(SKBUILD_METADATA_DIR [===[/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmptj9zdnsa/wheel/metadata]===] CACHE PATH "" FORCE)
  set(SKBUILD_STATE [===[wheel]===] CACHE STRING "" FORCE)
  set(CMAKE_PREFIX_PATH [===[/Users/gururaj/.cache/uv/builds-v0/.tmpoqLrrk/lib/python3.12/site-packages]===] CACHE PATH "" FORCE)
  set(CMAKE_FIND_ROOT_PATH_MODE_PACKAGE "BOTH" CACHE PATH "")
2024-12-19 23:40:08,979 - scikit_build_core - DEBUG - Env CMAKE_ARGS: ['-DCMAKE_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar', '-DCMAKE_CXX_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar', '-DCMAKE_C_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar', '-DCMAKE_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib', '-DCMAKE_CXX_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib', '-DCMAKE_C_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib', '-DCMAKE_LINKER=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ld', '-DCMAKE_STRIP=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-strip', '-DCMAKE_INSTALL_NAME_TOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-install_name_tool', '-DCMAKE_LIBTOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-libtool', '-DCMAKE_BUILD_TYPE=Release', '-DCMAKE_OSX_SYSROOT=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk']
2024-12-19 23:40:08,979 - scikit_build_core - WARNING - Unsupported CMAKE_ARGS ignored: -DCMAKE_BUILD_TYPE=Release
2024-12-19 23:40:08,979 - scikit_build_core - DEBUG - RUNENV:
  AR='arm64-apple-darwin20.0.0-ar'
  AS='arm64-apple-darwin20.0.0-as'
  BUILD='arm64-apple-darwin20.0.0'
  CC='arm64-apple-darwin20.0.0-clang'
  CC_FOR_BUILD='/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-clang'
  CFLAGS='-ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include'
  CHECKSYMS='arm64-apple-darwin20.0.0-checksyms'
  CLANG='arm64-apple-darwin20.0.0-clang'
  CLANGXX='arm64-apple-darwin20.0.0-clang++'
  CLICOLOR_FORCE='1'
  CMAKE_ARGS='-DCMAKE_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar -DCMAKE_CXX_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar -DCMAKE_C_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar -DCMAKE_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib -DCMAKE_C_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib -DCMAKE_LINKER=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ld -DCMAKE_STRIP=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-strip -DCMAKE_INSTALL_NAME_TOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-install_name_tool -DCMAKE_LIBTOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-libtool -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk'
  CMAKE_GENERATOR='Ninja'
  CMAKE_PREFIX_PATH=':/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build'
  COLORTERM='truecolor'
  COMMAND_MODE='unix2003'
  CONDA_CHANGEPS1='false'
  CONDA_DEFAULT_ENV='mysum:build'
  CONDA_EXE='/opt/anaconda3/bin/conda'
  CONDA_PREFIX='/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build'
  CONDA_PROMPT_MODIFIER=''
  CONDA_PYTHON_EXE='/opt/anaconda3/bin/python'
  CONDA_SHLVL='1'
  CONDA_TOOLCHAIN_BUILD='arm64-apple-darwin20.0.0'
  CONDA_TOOLCHAIN_HOST='arm64-apple-darwin20.0.0'
  CPPFLAGS='-D_FORTIFY_SOURCE=2 -isystem /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include'
  CXX='arm64-apple-darwin20.0.0-clang++'
  CXXFLAGS='-ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include'
  CXX_FOR_BUILD='/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-clang++'
  DEBUG_CFLAGS='-ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include'
  DEBUG_CXXFLAGS='-ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -Og -g -Wall -Wextra -isystem /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/include'
  GEM_HOME='/Users/gururaj/.gem/ruby/3.1.3'
  GEM_PATH='/Users/gururaj/.gem/ruby/3.1.3:/Users/gururaj/.rubies/ruby-3.1.3/lib/ruby/gems/3.1.0'
  GEM_ROOT='/Users/gururaj/.rubies/ruby-3.1.3/lib/ruby/gems/3.1.0'
  GIT_ASKPASS='/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/git/dist/askpass.sh'
  HOME='/Users/gururaj'
  HOMEBREW_CELLAR='/opt/homebrew/Cellar'
  HOMEBREW_PREFIX='/opt/homebrew'
  HOMEBREW_REPOSITORY='/opt/homebrew'
  HOST='arm64-apple-darwin20.0.0'
  INFOPATH='/opt/homebrew/share/info:/opt/homebrew/share/info:'
  INIT_CWD='/Users/gururaj/Test/pixi/examples/pybind11'
  INSTALL_NAME_TOOL='arm64-apple-darwin20.0.0-install_name_tool'
  LANG='en_US.UTF-8'
  LD='arm64-apple-darwin20.0.0-ld'
  LDFLAGS='-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/lib -L/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/lib'
  LDFLAGS_LD='-headerpad_max_install_names -dead_strip_dylibs -rpath /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/lib -L/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/lib'
  LIBTOOL='arm64-apple-darwin20.0.0-libtool'
  LIPO='arm64-apple-darwin20.0.0-lipo'
  LOGNAME='gururaj'
  LaunchInstanceID='82D866B8-7933-4034-8BF7-285C71A4E885'
  MESON_ARGS='-Dbuildtype=release'
  MallocNanoZone='0'
  NM='arm64-apple-darwin20.0.0-nm'
  NMEDIT='arm64-apple-darwin20.0.0-nmedit'
  OBJC='arm64-apple-darwin20.0.0-clang'
  OBJC_DISABLE_INITIALIZE_FORK_SAFETY='YES'
  OBJC_FOR_BUILD='/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-clang'
  OLDPWD='/Users/gururaj/Test/pixi/examples/pybind11'
  ORIGINAL_XDG_CURRENT_DESKTOP='undefined'
  OTOOL='arm64-apple-darwin20.0.0-otool'
  PAGESTUFF='arm64-apple-darwin20.0.0-pagestuff'
  PATH='/Users/gururaj/.cache/uv/builds-v0/.tmpoqLrrk/bin:/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin:/Users/gururaj/.pixi/bin:/opt/homebrew/opt/qt@5/bin:/opt/homebrew/opt/openjdk@17/bin:/opt/homebrew/opt/openjdk/bin:/Users/gururaj/.detaspace/bin:/Users/gururaj/.gem/ruby/3.1.3/bin:/Users/gururaj/.rubies/ruby-3.1.3/lib/ruby/gems/3.1.0/bin:/Users/gururaj/.rubies/ruby-3.1.3/bin:/opt/homebrew/bin/youtube-dl:/usr/local/homebrew/opt/[email protected]/bin:/opt/homebrew/opt/[email protected]/bin:/opt/homebrew/opt/unzip/bin:/Users/gururaj/.local/bin:/Users/gururaj/bin:/usr/local/bin:/opt/homebrew/opt/openjdk/bin:/opt/homebrew/bin:/opt/homebrew/sbin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Library/Apple/usr/bin:/Library/TeX/texbin:/Applications/Wireshark.app/Contents/MacOS:/usr/local/share/dotnet:~/.dotnet/tools:/Library/Frameworks/Mono.framework/Versions/Current/Commands:/Users/gururaj/.pixi/bin:/opt/homebrew/opt/qt@5/bin:/opt/homebrew/opt/openjdk@17/bin:/opt/homebrew/opt/openjdk/bin:/Users/gururaj/.detaspace/bin:/opt/homebrew/bin/youtube-dl:/usr/local/homebrew/opt/[email protected]/bin:/opt/homebrew/opt/[email protected]/bin:/opt/homebrew/opt/unzip/bin:/opt/anaconda3/bin:/opt/anaconda3/condabin:/Users/gururaj/.local/bin:/Users/gururaj/bin:/Users/gururaj/Library/Application Support/Code/User/globalStorage/github.copilot-chat/debugCommand'
  PIXI_ENVIRONMENT_NAME='build'
  PIXI_ENVIRONMENT_PLATFORMS='win-64,osx-arm64,linux-64,osx-64'
  PIXI_EXE='/opt/homebrew/bin/pixi'
  PIXI_IN_SHELL='1'
  PIXI_PROJECT_MANIFEST='/Users/gururaj/Test/pixi/examples/pybind11/pyproject.toml'
  PIXI_PROJECT_NAME='mysum'
  PIXI_PROJECT_ROOT='/Users/gururaj/Test/pixi/examples/pybind11'
  PIXI_PROJECT_VERSION='0.1.0'
  PIXI_PROMPT='(mysum:build) '
  PWD='/Users/gururaj/Test/pixi/examples/pybind11'
  PYTHONIOENCODING='utf-8:backslashreplace'
  RANLIB='arm64-apple-darwin20.0.0-ranlib'
  REDO_PREBINDING='arm64-apple-darwin20.0.0-redo_prebinding'
  RUBYOPT=''
  RUBY_ENGINE='ruby'
  RUBY_ROOT='/Users/gururaj/.rubies/ruby-3.1.3'
  RUBY_VERSION='3.1.3'
  SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk'
  SECURITYSESSIONID='186b0'
  SEGEDIT='arm64-apple-darwin20.0.0-segedit'
  SEG_ADDR_TABLE='arm64-apple-darwin20.0.0-seg_addr_table'
  SEG_HACK='arm64-apple-darwin20.0.0-seg_hack'
  SHELL='/bin/zsh'
  SHLVL='3'
  SIZE='arm64-apple-darwin20.0.0-size'
  SSH_AUTH_SOCK='/private/tmp/com.apple.launchd.9h7Z2pdIv9/Listeners'
  SSH_SOCKET_DIR='~/.ssh'
  STRINGS='arm64-apple-darwin20.0.0-strings'
  STRIP='arm64-apple-darwin20.0.0-strip'
  TERM='xterm-256color'
  TERM_PROGRAM='vscode'
  TERM_PROGRAM_VERSION='1.96.0'
  TMPDIR='/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/'
  USER='gururaj'
  USER_ZDOTDIR='/Users/gururaj'
  VIRTUAL_ENV='/Users/gururaj/.cache/uv/builds-v0/.tmpoqLrrk'
  VSCODE_GIT_ASKPASS_EXTRA_ARGS=''
  VSCODE_GIT_ASKPASS_MAIN='/Applications/Visual Studio Code.app/Contents/Resources/app/extensions/git/dist/askpass-main.js'
  VSCODE_GIT_ASKPASS_NODE='/Applications/Visual Studio Code.app/Contents/Frameworks/Code Helper (Plugin).app/Contents/MacOS/Code Helper (Plugin)'
  VSCODE_GIT_IPC_HANDLE='/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/vscode-git-11bd5dcec3.sock'
  VSCODE_INJECTION='1'
  WARP_HONOR_PS1='0'
  WARP_IS_LOCAL_SHELL_SESSION='1'
  WARP_USE_SSH_WRAPPER='1'
  XML_CATALOG_FILES='file:///Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/etc/xml/catalog file:///etc/xml/catalog'
  XPC_FLAGS='0x0'
  XPC_SERVICE_NAME='0'
  ZDOTDIR='/Users/gururaj'
  _='/opt/homebrew/bin/pixi'
  _CE_CONDA=''
  _CE_M=''
  _CONDA_PYTHON_SYSCONFIGDATA_NAME='_sysconfigdata_arm64_apple_darwin20_0_0'
  __CFBundleIdentifier='com.microsoft.VSCode'
  __CF_USER_TEXT_ENCODING='0x1F5:0x0:0x0'
  ac_cv_func_malloc_0_nonnull='yes'
  ac_cv_func_realloc_0_nonnull='yes'
  build_alias='arm64-apple-darwin20.0.0'
  host_alias='arm64-apple-darwin20.0.0'
2024-12-19 23:40:08,979 - scikit_build_core - INFO - RUN: /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/cmake -S. -B/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmptj9zdnsa/build -DCMAKE_BUILD_TYPE:STRING=Release -C/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmptj9zdnsa/build/CMakeInit.txt -DCMAKE_INSTALL_PREFIX=/var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmptj9zdnsa/wheel/platlib -DCMAKE_MAKE_PROGRAM=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/ninja -DCMAKE_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar -DCMAKE_CXX_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar -DCMAKE_C_COMPILER_AR=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ar -DCMAKE_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib -DCMAKE_C_COMPILER_RANLIB=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ranlib -DCMAKE_LINKER=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-ld -DCMAKE_STRIP=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-strip -DCMAKE_INSTALL_NAME_TOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-install_name_tool -DCMAKE_LIBTOOL=/Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-libtool -DCMAKE_OSX_SYSROOT=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
loading initial cache file /var/folders/xl/zb17p_vn1zldv1t3ptjftwkc0000gn/T/tmptj9zdnsa/build/CMakeInit.txt
-- The CXX compiler identification is Clang 17.0.6
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/bin/arm64-apple-darwin20.0.0-clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Error at /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/share/cmake-3.30/Modules/FindPackageHandleStandardArgs.cmake:233 (message):
  Could NOT find Python (missing: Python_NumPy_INCLUDE_DIRS Interpreter
  Development.Module NumPy) (found version "3.12.8")
Call Stack (most recent call first):
  /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/share/cmake-3.30/Modules/FindPackageHandleStandardArgs.cmake:603 (_FPHSA_FAILURE_MESSAGE)
  /Users/gururaj/Test/pixi/examples/pybind11/.pixi/envs/build/share/cmake-3.30/Modules/FindPython.cmake:673 (find_package_handle_standard_args)
  CMakeLists.txt:5 (find_package)


-- Configuring incomplete, errors occurred!

*** CMake configuration failed
error: Build backend failed to build wheel through `build_wheel` (exit status: 1)

I've tried some ways in CMake to find the python from the build environment, but I wasn't successful. I think this is a bug since pixi should remove this Python executable or at least not add it to PATH or set the VIRTUAL_ENV variable, which makes CMake's FindPython stop at this Python.

I'm not sure if this is a bug in pixi or rattler, so let me know if I need to post this in another repo! Thanks and happy holidays!

Expected behavior

PYTHON_EXECUTABLE should be set as .pixi/envs/build/bin/python instead of the uv cache python inside a temporary directory
@ruben-arts ruben-arts added 🐞 bug Something isn't working area:build Related to pixi build and removed area:build Related to pixi build labels Dec 20, 2024
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@ruben-arts @guru-desh