.gitignore

# History files
.Rhistory
.Rapp.history

# Session Data files
.RData

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# R Environment Variables
.Renviron

# no docs
docs/*.pdf

# large data
data/processed/**
!data/processed/00_placeholder.txt

data/rasters/**
!data/rasters/README.txt

data/results/**
!data/results/00_placeholder.txt

## ALLOW KEY RESULTS FOR VERSION CONTROL
!data/results/data_wgi_summary.csv
!data/results/mod_summary_*.txt
!data/results/data_patch_switch_summary.csv
!data/results/mod_summary_swallow_movement.txt
!data/results/data_visibility_steps_summary.csv
!data/results/mod_summary_rrv_visibility.txt
!data/results/data_clogit_fit_vis.csv

!data/00_placeholder.txt
!data/log_preprocessing.log

data/raw/**
!data/raw/README.txt

# ignore extent, is flexibly generated
data/spatial/extent

# ignore dsm
data/spatial/dsm/**
data/**/drive-download**

# ignore shapefile data
*hula_lc_vector*
*hula_valley*

# ignore patch spatials
data/spatial/data_patch_spatials*

# ignore Rdata
*.Rds

!*.log

# docx
*.docx
*.xlxs

# ignore supplement tex
docs/*.tex
.Rproj.user

figures/figures_preprocessing/
figures/figures_extra/

# ignore geopackages
*.gpkg

# all supplement document files
supplement-text/

# ignore QGIS files
# *.qgz

# ignore manuscript
manuscript/

# ignore local data archive
archive*

# ignore anaconda files
.conda
envs/*
.idea/

# data files
*.zip