Params2.yaml

# This is an example of a parameters file
# It is written according to the YAML-convention (www.yaml.org) and is checked by the code for consistency.
# Three types of settings are possible and reflected in the structure of the document:
#
# Setting Type:
#   Setting Name: <value>
#
# The three setting types are:
# - setting: Setting to use for preprocessing and class specific settings. if no <value> is specified, the value for
#   this setting is set to None.
# - featureClass: Feature class to enable, <value> is list of strings representing enabled features. If no <value> is
#   specified or <value> is an empty list ('[]'), all features for this class are enabled.
# - inputImage: input image to calculate features on. <value> is custom kwarg settings (dictionary). if <value> is an
#   empty dictionary ('{}'), no custom settings are added for this input image.
#
# Some settings have a limited list of possible values. Where this is the case, possible values are listed in the
# package documentation

# Settings to use, possible settings are mentioned in the documentation at the start of the modules.
setting:
  binWidth: 32
  label: 2
  interpolator: 'sitkBSpline' # This is an enumerated value, here None is not allowed
  resampledPixelSpacing: # This disables resampling, as it is interpreted as None, to enable it, specify spacing in x, y, z as [x, y , z]
  weightingNorm: # If no value is specified, it is interpreted as None

# Input images to use: original for unfiltered image and/or any other filters, see documentation of featureextractor.py
# for possible values
inputImage:
  Original: {} # for dictionaries / mappings, None values are not allowed, '{}' is interpreted as an empty dictionary

# Featureclasses, from which features must be calculated. If a featureclass is not mentioned, no features are calculated
# for that class. Otherwise, the specified features are calculated, or, if none are specified, all are calculated.
featureClass:
  shape: ['Volume',
          'SurfaceArea',
          'SurfaceVolumeRatio',
          'Sphericity',
          'SphericalDisproportion',
          'Maximum3DDiameter',
          'Maximum2DDiameterSlice',
          'Maximum2DDiameterColumn',
          'Maximum2DDiameterRow',
          'Elongation',
          'Flatness'] # Only enable these shape descriptors (disables redundant Compactness 1 and Compactness 2)
  firstorder: [] # specifying an empty list has the same effect as specifying nothing.
  glcm: # for lists none values are allowed, in this case, all features are enabled
  glrlm:
  glszm: