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Don't warn about frame shifts if the gene is annotated as frame shift #1249

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kimrutherford opened this issue Jan 8, 2025 · 0 comments
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@kimrutherford
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In the web JSON processing log:
https://curation.pombase.org/dumps/builds/pombase-build-2025-01-08/logs/log.2025-01-07-21-07-37.web-json-write

there are many warnings like this:

no gap between exons at 101873..101871 in SPAC1F8.07c.1

We should hide those warnings if the gene has frame shift annotation:

/controlled_curation="term=warning, frameshifted; cv=warning; ..."

That would get rid of all but three warnings:

@kimrutherford kimrutherford self-assigned this Jan 8, 2025
@kimrutherford kimrutherford changed the title Don't warn about frame shifts if the gene is annotated with a frame shift warning Don't warn about frame shifts if the gene is annotated as frame shift Jan 8, 2025
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