diff --git a/environment.yml b/environment.yml index 22eb295..86c1abd 100644 --- a/environment.yml +++ b/environment.yml @@ -1,4 +1,4 @@ -name: piranha +name: piranha2 channels: - conda-forge - bioconda @@ -12,6 +12,7 @@ dependencies: - iqtree>=2.1 - cov-ert::jclusterfunk>=0.0.25 - mafft + - nanoporetech::medaka - minimap2=2.17 - rasusa=0.7.1 - samtools=1.20 diff --git a/setup.py b/setup.py index 1c57585..65db381 100644 --- a/setup.py +++ b/setup.py @@ -25,7 +25,7 @@ "pandas~=1.5", "snipit>=1.2", "biopython", - "medaka~=1.12.0", + # "medaka=1.12.1", "numpy~=1.26.4", "scipy~=1.11" ],