From 1df79410748eb86125a63d27b54e6cf6563b8419 Mon Sep 17 00:00:00 2001 From: Rachel Colquhoun Date: Fri, 3 Nov 2023 13:16:35 +0000 Subject: [PATCH] Update README.md --- README.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/README.md b/README.md index bce5dd6..fdcb3e2 100644 --- a/README.md +++ b/README.md @@ -22,6 +22,9 @@ Any issues or feedback about the analysis or report please flag to this reposito ## Installing via ARTIFICE GUI - Download the release package for your machine from the [PiranhaGUI respository](https://github.com/polio-nanopore/piranhaGUI) +## Installing within EPI2ME +- Piranha is also compatible with the [EPI2ME](https://labs.epi2me.io/downloads/) workflow desktop application. This mode of running does not provide the same level of input checking and configurability as either the ARTIFICE GUI or the command line, but is provided as an alternative interactive interface. Once EPI2ME and docker have been downloaded, follow the instructions to [download a custom workflow](https://labs.epi2me.io/quickstart/) using the github path `https://github.com/polio-nanopore/piranha`. + ## Installation instructions (quick command line reference) >You need to have Git, a version of conda (link to Miniconda [here](https://docs.conda.io/en/latest/miniconda.html)) and mamba installed to run the following commands.