Contrasts missing from report

[jpiaszynski]

Environment

• fitlins version: 0.11.0

Problem

After updating to the latest version, the contrasts are no longer showing up in the report. Instead, a message is displayed reading "Missing contrast skipped (used: --drop-missing)" under each header. I don't believe this is an issue with the input data, as I verified that the previous version I had been using (0.10.1) is still able to produce a complete report with the same model. Going down the hierarchy for /node-runLevel/reports, I find the same files for each subject that I would see with the older version, including PNGs of the contrasts. The program is seemingly producing the contrasts, but then is unable to locate them for the report.

Fitlins call

singularity run --cleanenv \
    -B ${DATA_DIR} \
    -B ${BIDS_DIR} \
    -B ${DATA_DIR}/derivatives/fmriprep \
    -B ${DATA_DIR}/derivatives \
    -B ${DATA_DIR}/wdir \
    ${CONTAINERS}/fitlins-0.11.0.simg \
    ${BIDS_DIR} \
    ${OUT_DIR} \
    participant --participant-label ${SUBJECT} \
    -d ${DATA_DIR}/derivatives/fmriprep \
    -w ${DATA_DIR}/wdir \
    -m ${MODEL} \
    --n-cpus 8 --mem-gb 16 \
    --debug -v \
    --space MNI152NLin6Asym \
    --smoothing 8:dataset:iso

Model

{
    "Name": "animations",
    "Description": "",
    "BIDSModelVersion":"1.0.0",
    "Input":{
        "task": "animations"
    },
    "Nodes": [
        {
            "Level": "Run",
            "Name": "run_level",
            "GroupBy":["run","session","subject"],
            "Transformations":{
                "Transformer":"pybids-transforms-v1",
                "Instructions":[
                    {
                        "Name": "Factor",
                        "Input":[
                            "trial_type"
                        ]
                    },
                    {
                        "Name": "Convolve",
                        "Input":[
                            "trial_type.R",
                            "trial_type.M"
                        ],
                        "Model":"spm"
                    }
                ]
            },
            "Model":{
                "Type": "glm",
                "X":[
                    "trans_x", "trans_y", "trans_z", "rot_x", "rot_y", "rot_z",
                    "trial_type.R","trial_type.M"
                ]
            },
            "Contrasts":[
                {
                    "Name":"RvsM",
                    "ConditionList":["trial_type.R", "trial_type.M"],
                    "Weights":[1, -1],
                    "Test":"t"
                },
                {
                    "Name":"MvsR",
                    "ConditionList":["trial_type.M", "trial_type.R"],
                    "Weights":[1, -1],
                    "Test":"t"
                }
            ]
            
        },
        
        {
            "Level":"Dataset",
            "Name":"dataset_level",
            "GroupBy":["contrast"],
            "Model":{
                "X":[1],
                "Type":"glm"
            },
            "DummyContrasts":{"Test":"t"},
            "Contrasts":[
                {
                    "Name":"MvsR",
                    "ConditionList":["trial_type.M","trial_type.R"],
                    "Weights":[1,-1],
                    "Test":"F"
                },
                {
                    "Name":"RvsM",
                    "ConditionList":["trial_type.R","trial_type.M"],
                    "Weights":[1,-1],
                    "Test":"F"
                }
            ]
        }
    ]
}

[vogelbac]

I have the same problem for two different datasets with this version. If I run the same model with the version 0.10.1 then the report ist generated.