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DESCRIPTION
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DESCRIPTION
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Package: scDblFinder
Type: Package
Title: scDblFinder
Version: 1.19.7
Authors@R: c(
person("Pierre-Luc", "Germain", email="[email protected]", role=c("cre","aut"), comment=c(ORCID="0000-0003-3418-4218")),
person("Aaron", "Lun", email="[email protected]", role="ctb"))
URL: https://github.com/plger/scDblFinder,
https://plger.github.io/scDblFinder/
BugReports: https://github.com/plger/scDblFinder/issues
Description:
The scDblFinder package gathers various methods for the detection and
handling of doublets/multiplets in single-cell sequencing data (i.e.
multiple cells captured within the same droplet or reaction volume). It
includes methods formerly found in the scran package, the new fast
and comprehensive scDblFinder method, and a reimplementation of the
Amulet detection method for single-cell ATAC-seq.
License: GPL-3 + file LICENSE
Depends:
R (>= 4.0),
SingleCellExperiment
Imports:
igraph,
Matrix,
BiocGenerics,
BiocParallel,
BiocNeighbors,
BiocSingular,
S4Vectors,
SummarizedExperiment,
scran,
scater,
scuttle,
bluster,
methods,
DelayedArray,
xgboost,
stats,
utils,
MASS,
IRanges,
GenomicRanges,
GenomeInfoDb,
Rsamtools,
rtracklayer
Suggests:
BiocStyle,
knitr,
rmarkdown,
testthat,
scRNAseq,
circlize,
ComplexHeatmap,
ggplot2,
dplyr,
viridisLite,
mbkmeans
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.2.3
biocViews: Preprocessing, SingleCell, RNASeq, ATACSeq