diff --git a/oxford_asl.in b/oxford_asl.in index aa8d6cb..2a09ab2 100755 --- a/oxford_asl.in +++ b/oxford_asl.in @@ -402,10 +402,10 @@ Calibration() { usetrans=$tempdir/asl2struct.mat if [ ! -z $fasthasrun ]; then - # we have already run FAST so we can pass the PVE for CSF to asl_calib (to save running FAST again) - extraoptions=$extraoptions" --refpve $tempdir/pvcsf_struct" + # we have already run FAST so we can pass the PVE to asl_calib (to save running FAST again) + extraoptions=$extraoptions" --refpve $tempdir/pv${tissref}_struct" fi - + $asl_calib -c $tempdir/calib -s $usestruc -t $usetrans -o $outdir/calib --bmask $tempdir/mask --osen $outdir/native_space/sensitivity $maincaliboptions $extraoptions else