From 4fc78465528dc8096caa6d3115d8af73f5838c57 Mon Sep 17 00:00:00 2001 From: Martin Craig Date: Mon, 20 Aug 2018 12:26:51 +0100 Subject: [PATCH] Fix structural->std space transformation --- python/asl/gui/run_box.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/python/asl/gui/run_box.py b/python/asl/gui/run_box.py index aec78bc..e1d3789 100644 --- a/python/asl/gui/run_box.py +++ b/python/asl/gui/run_box.py @@ -297,10 +297,10 @@ def get_run_sequence(self): if self.structure.transform(): if self.structure.transform_type() == self.structure.TRANS_MATRIX: self.check_exists("Transformation matrix", self.structure.transform_file()) - cmd.add('--asl2struc "%s"' % self.structure.transform_file()) + cmd.add('-t "%s"' % self.structure.transform_file()) elif self.structure.transform_type() == self.structure.TRANS_IMAGE: self.check_exists("Warp image", self.structure.transform_file()) - cmd.add('--regfrom "%s"' % self.structure.transform_file()) + cmd.add('--warp "%s"' % self.structure.transform_file()) else: # This implies that FSLANAT output is being used, and hence # --fslanat is already specified