README.md

jazzPanda: A hybrid approach to find spatially relevant marker genes

in image-based spatial transcriptomics data

Explore the vignette »

Introduction

The jazzPanda package contains functions to find marker genes based on the spatial coordinates for imaging-based spatial transcriptomics technologies including 10x Xenium, NanoString CosMx and Vizgen MERSCOPE.

Installation

We are currently in the process of submitting jazzPanda to Bioconductor.

To install jazzPanda from github, use the following commands:

library(devtools)
devtools::install_github("phipsonlab/jazzPanda")

In order to view the vignette for jazzPanda use the following command:

browseVignettes("jazzPanda")