diff --git a/conf/iridanext.config b/conf/iridanext.config index 3299e55..7583a2d 100644 --- a/conf/iridanext.config +++ b/conf/iridanext.config @@ -13,6 +13,8 @@ iridanext { "**/distances/profile_dists.results.text", "**/distances/profile_dists.run.json", "**/merged/locidex.merge.profile.tsv", + "**/process/results.tsv", + "**/process/results.xlsx" ] } } diff --git a/tests/pipelines/main.nf.test b/tests/pipelines/main.nf.test index 2d3f9f0..864e74c 100644 --- a/tests/pipelines/main.nf.test +++ b/tests/pipelines/main.nf.test @@ -87,6 +87,8 @@ nextflow_pipeline { assert iridanext_global.findAll { it.path == "distances/profile_dists.query_profile.text" }.size() == 1 assert iridanext_global.findAll { it.path == "distances/profile_dists.allele_map.json" }.size() == 1 assert iridanext_global.findAll { it.path == "merged/locidex.merge.profile.tsv" }.size() == 1 + assert iridanext_global.findAll { it.path == "process/results.xlsx" }.size() == 1 + assert iridanext_global.findAll { it.path == "process/results.tsv" }.size() == 1 assert iridanext_samples.isEmpty() assert iridanext_metadata.isEmpty() @@ -226,6 +228,8 @@ nextflow_pipeline { assert iridanext_global.findAll { it.path == "distances/profile_dists.query_profile.text" }.size() == 1 assert iridanext_global.findAll { it.path == "distances/profile_dists.allele_map.json" }.size() == 1 assert iridanext_global.findAll { it.path == "merged/locidex.merge.profile.tsv" }.size() == 1 + assert iridanext_global.findAll { it.path == "process/results.xlsx" }.size() == 1 + assert iridanext_global.findAll { it.path == "process/results.tsv" }.size() == 1 assert iridanext_samples.isEmpty() assert iridanext_metadata.isEmpty() @@ -273,6 +277,8 @@ nextflow_pipeline { assert iridanext_global.findAll { it.path == "distances/profile_dists.query_profile.text" }.size() == 1 assert iridanext_global.findAll { it.path == "distances/profile_dists.allele_map.json" }.size() == 1 assert iridanext_global.findAll { it.path == "merged/locidex.merge.profile.tsv" }.size() == 1 + assert iridanext_global.findAll { it.path == "process/results.xlsx" }.size() == 1 + assert iridanext_global.findAll { it.path == "process/results.tsv" }.size() == 1 assert iridanext_samples.isEmpty() assert iridanext_metadata.isEmpty() @@ -334,6 +340,8 @@ nextflow_pipeline { assert iridanext_global.findAll { it.path == "distances/profile_dists.query_profile.text" }.size() == 1 assert iridanext_global.findAll { it.path == "distances/profile_dists.allele_map.json" }.size() == 1 assert iridanext_global.findAll { it.path == "merged/locidex.merge.profile.tsv" }.size() == 1 + assert iridanext_global.findAll { it.path == "process/results.xlsx" }.size() == 1 + assert iridanext_global.findAll { it.path == "process/results.tsv" }.size() == 1 assert iridanext_samples.isEmpty() assert iridanext_metadata.isEmpty() @@ -392,6 +400,8 @@ nextflow_pipeline { assert iridanext_global.findAll { it.path == "distances/profile_dists.query_profile.text" }.size() == 1 assert iridanext_global.findAll { it.path == "distances/profile_dists.allele_map.json" }.size() == 1 assert iridanext_global.findAll { it.path == "merged/locidex.merge.profile.tsv" }.size() == 1 + assert iridanext_global.findAll { it.path == "process/results.xlsx" }.size() == 1 + assert iridanext_global.findAll { it.path == "process/results.tsv" }.size() == 1 assert iridanext_samples.isEmpty() assert iridanext_metadata.isEmpty() @@ -444,6 +454,8 @@ nextflow_pipeline { assert iridanext_global.findAll { it.path == "distances/profile_dists.query_profile.text" }.size() == 1 assert iridanext_global.findAll { it.path == "distances/profile_dists.allele_map.json" }.size() == 1 assert iridanext_global.findAll { it.path == "merged/locidex.merge.profile.tsv" }.size() == 1 + assert iridanext_global.findAll { it.path == "process/results.xlsx" }.size() == 1 + assert iridanext_global.findAll { it.path == "process/results.tsv" }.size() == 1 assert iridanext_samples.isEmpty() assert iridanext_metadata.isEmpty()