From 731ed1477c3199f80e135420ed32b1aa76c764b1 Mon Sep 17 00:00:00 2001 From: pdimens Date: Mon, 15 Jul 2024 10:48:45 -0400 Subject: [PATCH] fix text --- src/harpy/reports/Naibr.Rmd | 2 +- src/harpy/reports/NaibrPop.Rmd | 9 ++++----- 2 files changed, 5 insertions(+), 6 deletions(-) diff --git a/src/harpy/reports/Naibr.Rmd b/src/harpy/reports/Naibr.Rmd index bbd277569..e75bad485 100644 --- a/src/harpy/reports/Naibr.Rmd +++ b/src/harpy/reports/Naibr.Rmd @@ -383,7 +383,7 @@ circosplot(sv, fa.sizes, samplename) ## per contig ### Per-contig {.no-title data-height=7000}

Structural Variants Per Contig

-Below is a plot to help you assess what structural variants were detected by LEVIATHAN. These plots are interactive, +Below is a plot to help you assess what structural variants were detected by NAIBR. These plots are interactive, allowing you to hover over a variant to provide additional information, including the genomic interval in which it occurs and the number of haplotag barcodes supporting the variant. diff --git a/src/harpy/reports/NaibrPop.Rmd b/src/harpy/reports/NaibrPop.Rmd index e1018a662..80c36aab4 100644 --- a/src/harpy/reports/NaibrPop.Rmd +++ b/src/harpy/reports/NaibrPop.Rmd @@ -45,11 +45,10 @@ script src = "https://ajax.googleapis.com/ajax/libs/jquery/3.7.1/jquery.min.js" ``` ```{r echo = FALSE, warnings = FALSE, message = FALSE} -#infiles <- snakemake@input[["bedpe"]] -#fai <- snakemake@input[["fai"]] -#infiles <- paste0("/home/pdimens/", c("AW","BL"), ".bedpe") -infiles <- list.files(path = "~", pattern = "*bedpe", full.names = T) -fai <- "~/test.fai" +infiles <- snakemake@input[["bedpe"]] +fai <- snakemake@input[["fai"]] +#infiles <- list.files(path = "~", pattern = "*bedpe", full.names = T) +#fai <- "~/test.fai" ``` # General Stats