From 656194794ac32dc650cdaf74932a23707de3c0f0 Mon Sep 17 00:00:00 2001 From: pdimens Date: Fri, 27 Oct 2023 11:30:00 -0400 Subject: [PATCH] consistent naming, force tests --- .github/workflows/demux.yml | 2 +- .github/workflows/preflight.yml | 4 ++-- .github/workflows/qc.yml | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/demux.yml b/.github/workflows/demux.yml index aedbba430..d5c5e2c1d 100644 --- a/.github/workflows/demux.yml +++ b/.github/workflows/demux.yml @@ -53,6 +53,6 @@ jobs: misc/buildforCI.sh shell: micromamba-shell {0} - - name: Test harpy demux + - name: harpy demultiplex run: harpy demultiplex gen1 --file test/demux/Undetermined_S0_L004_I1_001.fastq.gz --samplesheet test/demux/samples.schema shell: micromamba-shell {0} \ No newline at end of file diff --git a/.github/workflows/preflight.yml b/.github/workflows/preflight.yml index 40111d99b..64d8809ba 100644 --- a/.github/workflows/preflight.yml +++ b/.github/workflows/preflight.yml @@ -60,10 +60,10 @@ jobs: misc/buildforCI.sh shell: micromamba-shell {0} - - name: Test harpy preflight fastq + - name: harpy preflight fastq run: harpy preflight fastq -d test/fastq shell: micromamba-shell {0} - - name: Test harpy preflight bam + - name: harpy preflight bam run: harpy preflight bam -d test/bam shell: micromamba-shell {0} \ No newline at end of file diff --git a/.github/workflows/qc.yml b/.github/workflows/qc.yml index eb4166be8..f46e05eb8 100644 --- a/.github/workflows/qc.yml +++ b/.github/workflows/qc.yml @@ -48,6 +48,6 @@ jobs: misc/buildforCI.sh shell: micromamba-shell {0} - - name: Test harpy qc + - name: harpy qc run: harpy qc -d test/fastq shell: micromamba-shell {0} \ No newline at end of file