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diff --git a/blog/filteringsnps/index.html b/blog/filteringsnps/index.html index 4b28c18b3..3af75ba77 100644 --- a/blog/filteringsnps/index.html +++ b/blog/filteringsnps/index.html @@ -4,7 +4,7 @@ - + @@ -37,12 +37,12 @@ - + - + - - + +
diff --git a/blog/index.html b/blog/index.html index 147d3a156..cbc728787 100644 --- a/blog/index.html +++ b/blog/index.html @@ -4,7 +4,7 @@ - + @@ -32,11 +32,11 @@ - + - + - +
diff --git a/blog/softwareenvironments/index.html b/blog/softwareenvironments/index.html index a7c904e00..f06ef2202 100644 --- a/blog/softwareenvironments/index.html +++ b/blog/softwareenvironments/index.html @@ -4,7 +4,7 @@ - + @@ -37,12 +37,12 @@ - + - + - - + +
diff --git a/blog/svpooling/index.html b/blog/svpooling/index.html index 535ab050a..d49f6c460 100644 --- a/blog/svpooling/index.html +++ b/blog/svpooling/index.html @@ -4,7 +4,7 @@ - + @@ -37,11 +37,11 @@ - + - + - +
@@ -341,7 +341,7 @@

It's recommended to have at least 10X-12X depth to get decent structural variant calls (definitely read that in a paper that I would like to link here, but I can't seem to find it). If your data already has a minimum of 10X for each individual, great! Feel free to use -variant callers like naibr and leviathan to identify structural variants. Hwoever, if +variant callers like naibr and leviathan to identify structural variants. However, if you opted to sequence more individuals at lower coverage (lcWGS is often between 0.5-5X), then calling structural variants in individuals may be a challenge.

@@ -373,7 +373,7 @@

PCA of Alosa sapidissima (SNPs from low-coverage haplotag dataset)

-

Given these results, a sensible pooling strategy would be:

+

Given these results, a sensible pooling strategy may be:

  • Pool 1: Miramichi samples
  • Pool 2: Annapolis samples
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