From 4ced33cd3bc6301da3754e50af91bcb1083bf9fd Mon Sep 17 00:00:00 2001 From: pdimens Date: Thu, 2 May 2024 14:32:01 -0400 Subject: [PATCH] swap xml --- src/harpy/helperfunctions.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/harpy/helperfunctions.py b/src/harpy/helperfunctions.py index 31b2ebbee..8c9f4b8b0 100644 --- a/src/harpy/helperfunctions.py +++ b/src/harpy/helperfunctions.py @@ -27,7 +27,7 @@ def generate_conda_deps(): "variants.sv": ["bioconda::leviathan", "bioconda::naibr-plus"], "phase" : ["bioconda::hapcut2", "bioconda::whatshap"], "simulations" : ["conda-forge::perl", "bioconda::perl-math-random", "bioconda::perl-inline-c", "bioconda::perl-parse-recdescent", "conda-forge::numpy", "bioconda::dwgsim", "alienzj::msort"], - "r-env" : ["conda-forge::libxml2", "bioconda::bioconductor-complexheatmap", "conda-forge::r-highcharter", "conda-forge::r-circlize", "r::r-biocircos", "conda-forge::r-dt", "conda-forge::r-flexdashboard", "conda-forge::r-ggplot2", "conda-forge::r-ggridges", "conda-forge::r-plotly", "conda-forge::r-tidyr", "bioconda::r-stitch"] + "r-env" : ["conda-forge::r-xml", "bioconda::bioconductor-complexheatmap", "conda-forge::r-highcharter", "conda-forge::r-circlize", "r::r-biocircos", "conda-forge::r-dt", "conda-forge::r-flexdashboard", "conda-forge::r-ggplot2", "conda-forge::r-ggridges", "conda-forge::r-plotly", "conda-forge::r-tidyr", "bioconda::r-stitch"] } os.makedirs(".harpy_envs", exist_ok = True) for i in environ: