diff --git a/src/harpy/snakefiles/sv_naibr_phase.smk b/src/harpy/snakefiles/sv_naibr_phase.smk
index d99854662..8540ece7e 100644
--- a/src/harpy/snakefiles/sv_naibr_phase.smk
+++ b/src/harpy/snakefiles/sv_naibr_phase.smk
@@ -313,7 +313,7 @@ rule merge_variants:
 
 rule create_report:
     input:
-        bedpe = outdir + "/{sample}.bedpe",
+        bedpe = outdir + "/bedpe/{sample}.bedpe",
         fai   = f"Genome/{validgenome}.fai"
     output:
         outdir + "/reports/{sample}.naibr.html"