.gitignore

# object files and libraries
*.[oa]
*.so
*.obj
*.lib
*.dll
*.dylib
*.pyd
*.exe
# patch generated
*.orig
*.rej
# python generated
*.lprof
*.pyc
*.pyo
# OS generated
.DS_Store
.DS_Store?
.Trashes
Thumbs.db
*.exp
# Editors (Emacs, Vi{,m}, etc)
.projectile
.fleet
*.swp
.vscode
# Test files
.coverage
*htmlcov
#
errs*
build
pip.log
prebuilt*.bz2
ChimeraX.app
imex.h
setup.py
*.egg-info
.eggs
dist
*~
*.out
_build
# {Virtual,} Environments
# The Windows venv doesn't have a leading dot
venv
.venv
.virtualenv
.makerc
.idea
# Fetched tarballs and dylibs for M1 port
prereqs/pips/imagecodecs*.whl
prereqs/pips/netCDF4*.whl
prereqs/pips/tables*.whl
prereqs/pips/*.dylib.arm64
prereqs/pips/*.dylib
# Other autogenerated or bundle-generated files
src/apps/structcomp/structcomp.sh
src/apps/ChimeraX/ChimeraX-tool.png
src/apps/ChimeraX/ChimeraX.ico
src/apps/ChimeraX/icon.rc
src/bundles/Makefile.dependencies
src/bundles/alignment_headers/src/bin
src/bundles/arrays/src/include/
src/bundles/atomic/atomic_cpp/connect.cpp
src/bundles/atomic/atomic_cpp/cymol.cpp
src/bundles/atomic/atomic_cpp/cytmpl.cpp
src/bundles/atomic/atomic_cpp/data/
src/bundles/atomic/atomic_cpp/include/
src/bundles/atomic/atomic_cpp/pyinstance_cpp/imex.map.h
src/bundles/atomic/src/include/
src/bundles/atomic/src/data/
src/bundles/atomic/src/connect.pyx
src/bundles/atomic/src/cymol.pyx
src/bundles/atomic/src/cytmpl.pyx
src/bundles/atom_search/search_cpp/ast.cpp
src/bundles/atom_search/src/include/
src/bundles/atom_search/src/ast.pyx
src/bundles/atom_search_lib/src/include/
src/bundles/atomic_lib/atomic_cpp/pyinstance_cpp/imex.map.h
src/bundles/atomic_lib/src/data/
src/bundles/atomic_lib/src/include/
src/bundles/chem_group/src/__init__.py
src/bundles/chem_group/bundle_info.xml
src/bundles/looking_glass/holoplaycore-*.tar.gz
src/bundles/md_crds/gromacs/xdrfile-1.1b/
src/bundles/meeting/src/server.pem
src/bundles/mmcif/mmcif_cpp/include/
src/bundles/mmcif/src/mmcif.cpp
src/bundles/mmcif/src/mmcif_write.cpp
src/bundles/mmtf/.eggs/
src/bundles/mmtf/mmtf-cpp-*
src/bundles/mmtf/msgpack-c-*
src/bundles/pdb/pdb_cpp/include/
src/bundles/pdb/src/include/
src/bundles/pdb_lib/src/include/
src/bundles/rest_server/src/server.pem
src/bundles/rest_server/server.key
src/bundles/ui/src/about.html
src/bundles/segger/seggerx/
src/bundles/segger/seggerx*.tar.gz
src/bundles/std_commands/bundle_info.xml
src/bundles/viewdockx/src/lib/flot
src/bundles/viewdockx/src/lib/rateyo
src/bundles/viewdockx/src/lib/jquery.multiselect.*
src/bundles/core/src/buildinfo.py
src/bundles/core/src/_serialize.cpp
src/bundles/core/src/_serialize.cpp-e
src/bundles/core/src/include
src/bundles/core/src/commands/_atomspec.py
src/examples/sample/license.txt
src/examples/sample/vc140.pdb
src/wheelhouse/Makefile.wheelhouse
prereqs/ambertools/ambertools-*.tar.bz2
prereqs/ambertools/Ambertools-*.tar.bz2
prereqs/ambertools/AmberTools-*.tar.bz2
prereqs/ambertools/ambertools*.tar.bz2
prereqs/ambertools/Ambertools*.tar.bz2
prereqs/ambertools/AmberTools*.tar.bz2
prereqs/chrpath/*.tar.gz
prereqs/cxservices/cxservices-*.whl
prereqs/ffmpeg/ffmpeg-*.tar.bz2
prereqs/ffmpeg/libogg-*.tar.xz
prereqs/ffmpeg/libtheora-*.tar.xz
prereqs/ffmpeg/libvpx-*.tar.xz
prereqs/ffmpeg/x264-*.tar.xz
prereqs/ffmpeg/yasm-*.tar.bz2
prereqs/openmm/openmm-*.tar.bz2
prereqs/openssl/*.gz
prereqs/osmesa/*.bz2
prereqs/p7zip/*.bz2
prereqs/p7zip/*.xz
prereqs/p7zip/7za
prereqs/pytables/tables-*.tar.gz
prereqs/Python/Python-*/
prereqs/Python/Python.framework
prereqs/Python/python-*.tar.bz2
prereqs/Python/*.xz
prereqs/Python/relocatable-python
prereqs/PyQt/*commercial*
prereqs/PyQt/qt/*.xz
prereqs/zlib/*.gz
docs/devel/apps
docs/devel/chimerax
docs/devel/modules
docs/license.html
docs/license.txt
docs/embedded.html
docs/devel/index.rst
docs/devel/_static
docs/licenses
vdocs/user/
# Ignore autogenerated images on Linux
src/apps/ChimeraX/ChimeraX-icon128.png
src/apps/ChimeraX/ChimeraX-icon64.png
src/apps/ChimeraX/ChimeraX-icon32.png
src/apps/ChimeraX/ChimeraX-icon16.png