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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(as.flowSet.SE)
export(asciify)
export(barplot.cell.pops)
export(batch.removal)
export(boxplot.cell.clustering)
export(cell.count.bx)
export(circ.tree)
export(clustering.flow)
export(clusters.rename)
export(col.annot.pheatmap)
export(combine.subclusterings)
export(corplot.conditions)
export(cox.plot)
export(dim.reduction)
export(div.colors)
export(dotplot.DE)
export(dr.plotting)
export(dumbPlot)
export(export.metaFCS)
export(fcs.SCE)
export(flowplot)
export(marker.names)
export(marker.normalization)
export(median.dr)
export(median.heatmap)
export(median.values)
export(multicox)
export(multidensity)
export(parallel.plot)
export(pop.cutoff)
export(prog.pop.selection)
export(qc.and.removeDoublets)
export(read.FCSset)
export(remove.pop)
export(rpart.tree)
export(sc.heatmap)
export(scMetadata.fromFCS)
export(scale.exprs)
export(sub.samples)
export(surv.plot)
export(unicox)
export(unify.FCSheaders)
exportClasses(cutoff.object)
exportMethods(extract.cutoffs)
import(dplyr)
import(ggplot2)
import(reticulate)
import(survival)
importFrom(RColorBrewer,brewer.pal)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,colData)
importFrom(SingleCellExperiment,reducedDims)
importFrom(SummarizedExperiment,assay)
importFrom(data.table,as.data.table)
importFrom(data.table,melt)
importFrom(filesstrings,file.move)
importFrom(flowCore,colnames)
importFrom(flowCore,exprs)
importFrom(flowCore,fsApply)
importFrom(flowCore,read.FCS)
importFrom(flowCore,sampleNames)
importFrom(flowCore,write.FCS)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,par)
importFrom(grid,unit)
importFrom(knitr,kable)
importFrom(ncdfFlow,as.flowSet)
importFrom(ncdfFlow,read.ncdfFlowSet)
importFrom(parallel,detectCores)
importFrom(pheatmap,pheatmap)
importFrom(progress,progress_bar)
importFrom(scales,math_format)
importFrom(scales,trans_breaks)
importFrom(scales,trans_format)
importFrom(stats,aggregate)
importFrom(stats,as.formula)
importFrom(stats,complete.cases)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,relevel)
importFrom(stats,sd)
importFrom(utils,View)
importFrom(utils,capture.output)
importFrom(utils,read.table)
importFrom(utils,tail)