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Write warning messages to STDERR #43

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merkys opened this issue Sep 30, 2022 · 0 comments
Open

Write warning messages to STDERR #43

merkys opened this issue Sep 30, 2022 · 0 comments

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@merkys
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merkys commented Sep 30, 2022

The following warning is written to STDOUT:

print("Limiting hmmer search to species %s was requested but hits did not achieve a high enough bitscore. Reverting to using any species" %(hmmer_species))

I suggest writing all warnings/errors to STDERR (seems to be done elsewhere in the project), otherwise there is a risk to jam the output stream, for example, if ANARCI is used in Python scripts that write files to STDOUT.

merkys added a commit to merkys/covid-lt that referenced this issue Oct 3, 2022
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