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Preprocessing, Model Builders and Directors, Dataset Loader #1

Merged
merged 58 commits into from
Dec 28, 2023
Merged

Preprocessing, Model Builders and Directors, Dataset Loader #1

merged 58 commits into from
Dec 28, 2023

Commits on Oct 16, 2023

  1. Add notebooks with initial analysis

    @owczr
    owczr committed Oct 16, 2023
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  2. Update gitignore

    @owczr
    owczr committed Oct 16, 2023
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  3. Add src with initial projects structure and TODO.md

    @owczr
    owczr committed Oct 16, 2023
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Commits on Oct 22, 2023

  1. Add notebook with lung segmentation method

    @owczr
    owczr committed Oct 22, 2023
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Commits on Oct 31, 2023

  1. Add notebook with annotation analysis

    @owczr
    owczr committed Oct 31, 2023
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  2. Add notebook with dicom tag analysis

    @owczr
    owczr committed Oct 31, 2023
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  3. Add processing logic and skeleton of class structure

    @owczr
    owczr committed Oct 31, 2023
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Commits on Nov 1, 2023

  1. Add BaseProcessor, AnnotationProcessor, DicomProcessor and DatasetPro… 

    …cessor classes
    @owczr
    owczr committed Nov 1, 2023
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  2. Update README.md

    @owczr
    owczr committed Nov 1, 2023
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  3. Update notebooks structure and add more dicom analysis

    @owczr
    owczr committed Nov 1, 2023
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  4. Add logging, fix imports and bugs

    @owczr
    owczr committed Nov 1, 2023
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Commits on Nov 2, 2023

  1. Add annotation mask to DicomProcessor, add preprocessing analysis and… 

    … update codebase
    @owczr
    owczr committed Nov 2, 2023
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Commits on Nov 9, 2023

  1. Add notebook to check preprocessing arrays

    @owczr
    owczr committed Nov 9, 2023
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Commits on Dec 27, 2023

  1. Add base ModelBuilder, ModelDirector and MobileNetBuilder classes

    @owczr
    owczr committed Dec 27, 2023
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  2. Add MobileNetBuilder tests

    @owczr
    owczr committed Dec 27, 2023
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  3. Add new functionalities to DatasetProcessor 

    Introduce train test splitting method of preprocessed dataset.
Also add methods to remove processed and train test data.
    @owczr
    owczr committed Dec 27, 2023
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  4. Add more logging to DatasetProcessor and update processing script, ad… 

    …d new package with scripts
    @owczr
    owczr committed Dec 27, 2023
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Commits on Dec 28, 2023

  1. Add DatasetLoader class with tests

    @owczr
    owczr committed Dec 28, 2023
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  2. Rename model_builder.py to base.py

    @owczr
    owczr committed Dec 28, 2023
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  3. Add BaseModelDirector interface and update ModelDirector

    @owczr
    owczr committed Dec 28, 2023
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  4. Add additional preprocessing layers to MobileNetBuilder

    @owczr
    owczr committed Dec 28, 2023
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  5. Update builders __init__.py

    @owczr
    owczr committed Dec 28, 2023
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  6. Add image constants to utils

    @owczr
    owczr committed Dec 28, 2023
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  7. Update MobileNet training script

    @owczr
    owczr committed Dec 28, 2023
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  8. Remove TODO.md

    @owczr
    owczr committed Dec 28, 2023
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  9. Fix typo in mobilenet build script

    @owczr
    owczr committed Dec 28, 2023
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  10. Rename mobilenet_builder

    @owczr
    owczr committed Dec 28, 2023
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  11. Add EfficientNetBuilder and training script

    @owczr
    owczr committed Dec 28, 2023
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  12. Add missing import in DicomProcessor

    @owczr
    owczr committed Dec 28, 2023
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  13. Remove rescaling layer from MobileNetBuilder

    @owczr
    owczr committed Dec 28, 2023
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  14. Add EfficientNetBuilder test and fix it

    @owczr
    owczr committed Dec 28, 2023
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  15. Add template for model builders

    @owczr
    owczr committed Dec 28, 2023
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  16. Update test class name

    @owczr
    owczr committed Dec 28, 2023
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  17. Add template for model builder tests

    @owczr
    owczr committed Dec 28, 2023
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  18. Add InceptionNet builter, test and script

    @owczr
    owczr committed Dec 28, 2023
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  19. Update builder template

    @owczr
    owczr committed Dec 28, 2023
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  20. Add local training script template

    @owczr
    owczr committed Dec 28, 2023
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  21. Add XCeption builder, tests and training script

    @owczr
    owczr committed Dec 28, 2023
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  22. Update builder template

    @owczr
    owczr committed Dec 28, 2023
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  23. Update template and module docstrings

    @owczr
    owczr committed Dec 28, 2023
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  24. Add ResNet builder, tests and training script

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    owczr committed Dec 28, 2023
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  25. Add NASNet builder, tests and training script

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    owczr committed Dec 28, 2023
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  26. Update test class names

    @owczr
    owczr committed Dec 28, 2023
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  27. Add VGG builder, tests and training script

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    owczr committed Dec 28, 2023
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  28. Update training script template

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    owczr committed Dec 28, 2023
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  29. Add DenseNet builder, tests and training script

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    owczr committed Dec 28, 2023
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  30. Add ConvNeXt builder, tests and training script

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    owczr committed Dec 28, 2023
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  31. Add EfficientNetV2 builder, tests and training script

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    owczr committed Dec 28, 2023
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  32. Add ResNetV2 builder, tests and training script

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  33. Add __str__ methods to existing builder classes

    @owczr
    owczr committed Dec 28, 2023
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  34. Add InceptionResNet builer, tests and training script

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    owczr committed Dec 28, 2023
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  35. Add small documentation on the main classes

    @owczr
    owczr committed Dec 28, 2023
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  36. Unclutter README.md

    @owczr
    owczr committed Dec 28, 2023
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  37. Change base models to smallest possible

    @owczr
    owczr committed Dec 28, 2023
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  38. Add dotenv support, remove hardcoded paths and update scripts

    @owczr
    owczr committed Dec 28, 2023
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  39. Add requirements.txt

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    owczr committed Dec 28, 2023
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  40. Change skimage to scikit-image

    @owczr
    owczr committed Dec 28, 2023
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  41. Add pytest to requirements.txt

    @owczr
    owczr committed Dec 28, 2023
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