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@weisberglab Weisberg Lab

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    9 repositories

    • beav

      Public
      BEAV: Bacterial Element Annotation reVamped
      Shell
      •
      GNU General Public License v3.0
      •4•59•5•0•Updated Oct 31, 2024Oct 31, 2024

    • extract_ti

      Public
      Extract Ti/Ri oncogenic plasmid based on BEAV output
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 3, 2023Nov 3, 2023

    • conda_channel

      Public
      Shell
      •0•0•0•0•Updated Oct 4, 2023Oct 4, 2023

    • Weisberglab_Utils

      Public
      Set of commonly used scripts during various analysis
      Shell
      •0•0•0•0•Updated Sep 12, 2023Sep 12, 2023

    • PaperBLAST_Beav

      Public
      PaperBLAST: find papers about a protein or its homologs
      Perl
      •
      GNU General Public License v3.0
      •6•0•0•0•Updated Aug 18, 2023Aug 18, 2023

    • PaperBLAST

      Public
      PaperBLAST: find papers about a protein or its homologs
      Perl
      •
      GNU General Public License v3.0
      •6•1•0•0•Updated Aug 18, 2023Aug 18, 2023

    • DBSCAN-SWA

      Public
      A modified version of DBSCAN-SWA to allow for dependencies in PATH rather than hardcoded.
      Python
      •13•0•0•0•Updated Aug 18, 2023Aug 18, 2023

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.3k•0•0•0•Updated Apr 9, 2023Apr 9, 2023

    • TIGER

      Public
      Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes; package also includes orthogonal program Islander
      C
      •
      Other
      •5•0•0•0•Updated Sep 16, 2022Sep 16, 2022