Repositories list

• CLEAN

  Public
  R

  •1•2•1•0•Updated Oct 15, 2024Oct 15, 2024

• grcalculator

  Public
  HTML

  •4•5•0•0•Updated Feb 25, 2024Feb 25, 2024

• pinet-server

  Public
  JavaScript

  •

  MIT License

  •1•1•0•0•Updated Feb 1, 2024Feb 1, 2024

• ilincsAPI

  Public
  HTML

  •

  MIT License

  •2•9•0•1•Updated Nov 30, 2023Nov 30, 2023

• GRcalculator-docker

  Public
  Dockerfile

  •1•0•0•0•Updated Jul 4, 2023Jul 4, 2023

• gimmRW

  Public
  gimmR package for windows

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 5, 2023Apr 5, 2023

• CLEAN.Mm

  Public
  R

  •0•0•0•0•Updated Oct 18, 2022Oct 18, 2022

• CLEAN.Hs

  Public
  R

  •0•0•0•0•Updated Sep 15, 2022Sep 15, 2022

• iPAS

  Public
  iPAS is an R package for detecting changes in signaling pathway activity from transcriptional profiles.

  R

  •0•1•0•0•Updated May 26, 2022May 26, 2022

• grbrowser

  Public
  R

  •4•1•0•0•Updated Mar 1, 2021Mar 1, 2021

• grtutorial

  Public
  HTML

  •3•0•0•0•Updated Mar 1, 2021Mar 1, 2021

• GRmetrics

  Public
  R

  •0•1•1•0•Updated Nov 4, 2020Nov 4, 2020

• paslincs

  Public
  pasLINCS R package

  HTML

  •

  MIT License

  •0•2•1•0•Updated May 26, 2020May 26, 2020

• CLEAN.Rn

  Public
  R

  •0•0•0•0•Updated Mar 2, 2020Mar 2, 2020

• scRNA-seq

  Public
  0•0•0•0•Updated Dec 18, 2019Dec 18, 2019

• GREP2

  Public
  GEO RNA-seq Experiments Processing Pipeline

  rna-seqgene-expression-omnibussratoolkit+ 3rna-seq-pipelinepipelinesra

  R

  •10•20•3•0•Updated Oct 25, 2019Oct 25, 2019

• LINCS_MOA_pred_implementation

  Public
  ML classifiers used to predict Mechanism of Action of chemical perturbagens using L1000 gene expression data

  Jupyter Notebook

  •1•0•0•0•Updated Jul 12, 2019Jul 12, 2019

• SigNetA

  Public
  R

  •0•0•0•0•Updated May 28, 2019May 28, 2019

• GREIN

  Public
  GREIN : GEO RNA-seq Experiments Interactive Navigator

  processingrna-seqr+ 14geographical-interfacegene-expressionbioinformatics-pipelineinteractive-analysisshiny-appsrna-seq-analysis+ 7

  HTML

  •

  GNU General Public License v2.0

  •19•48•1•0•Updated May 28, 2019May 28, 2019

• SigNetA_Docker

  Public
  R

  •0•0•0•0•Updated May 3, 2019May 3, 2019

• KEGGlincs

  Public
  Repository for Bioconductor package KEGGlincs

  R

  •1•0•0•1•Updated Mar 26, 2019Mar 26, 2019

• PCCSE-provenance

  Public
  processing pipeline to modify PCCSE level 4 data

  Shell

  •

  MIT License

  •0•0•0•0•Updated Jan 24, 2019Jan 24, 2019

• shinyLi

  Public
  JavaScript

  •2•0•0•0•Updated Oct 24, 2018Oct 24, 2018

• webgimm

  Public
  R

  •

  Other

  •0•1•0•0•Updated Oct 17, 2018Oct 17, 2018

• neurolincs-pp

  Public
  Python

  •1•0•0•0•Updated Sep 11, 2017Sep 11, 2017

• GRmetrics_old

  Public
  This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/GRmetrics.html Contributions: https://github.com/uc-bd2k/GRmetrics. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=GRmetrics or https://github.com/uc-bd2k/GRmetrics/issues.

  R

  •0•0•0•0•Updated Jul 29, 2017Jul 29, 2017

• rcytoscapejs2

  Public
  JavaScript

  •

  Other

  •0•0•0•0•Updated Apr 13, 2017Apr 13, 2017

• tRegs

  Public
  R

  •0•0•0•0•Updated Apr 7, 2017Apr 7, 2017

• gimmR

  Public
  R package for genomics data analysis using infinite mixture models

  R

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Mar 2, 2017Mar 2, 2017

• treg

  Public
  R

  •0•0•0•0•Updated Mar 1, 2017Mar 1, 2017