Repositories list

• dual-mouse

  Public
  Python

  •0•1•0•0•Updated Jan 24, 2025Jan 24, 2025

• simple-vs

  Public
  A set of python scripts (for now) that are used to do visual experiments.

  Jupyter Notebook

  •1•0•0•0•Updated Dec 5, 2024Dec 5, 2024

• slicescan

  Public
  Code for analyzing slice imaging data (realtime and offline)

  Jupyter Notebook

  •

  MIT License

  •0•2•0•0•Updated Sep 26, 2024Sep 26, 2024

• PiPaw2.0_DataAnalysis

  Public
  Data analysis codes and results for PiPaw2.0

  MATLAB

  •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

• bq3d_demo

  Public
  BrainQuant3D setup for the Data Analysis Workshop May 2024

  Jupyter Notebook

  •0•0•0•0•Updated May 18, 2024May 18, 2024

• pyDynamo

  Public
  Dynamo rewrite from Matlab to Python

  Python

  •

  MIT License

  •2•7•0•0•Updated Apr 28, 2024Apr 28, 2024

• s2p_demo

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

• dlc_demo

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

• apptainer_demo

  Public
  Demonstration for using Apptainer with HPC resources (Compute Canada, UBC Sockeye).

  Python

  •0•0•0•0•Updated Mar 4, 2024Mar 4, 2024

• PiPaw

  Public
  Scripts for running the PiPaw home-cage behavioural testing system

  Python

  •

  MIT License

  •1•0•0•0•Updated Feb 2, 2024Feb 2, 2024

• scholar_metrics_scraper

  Public
  This script automates the process of scraping this information from Google Scholar for a list of authors.

  Jupyter Notebook

  •2•4•0•0•Updated Jan 9, 2024Jan 9, 2024

• meso-vit

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 20, 2023Dec 20, 2023

• Mesoscope-Resources

  Public
  C++

  •0•0•0•0•Updated Dec 20, 2023Dec 20, 2023

• Social-Interaction-Analysis

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 2, 2023Dec 2, 2023

• MATLABTutorials

  Public
  This repository contains the materials used in the MATLAB tutorials offered by the NeuroImaging and NeuroComputation Centre at UBC. Note that the files are uploaded in batches on a weekly basis (Summer 2019).

  MATLAB

  •1•3•0•0•Updated Sep 7, 2023Sep 7, 2023

• AHF_setup

  Public
  A setup script that should install and build all necessary files needed for AutoHeadFix

  Shell

  •4•1•0•0•Updated Jun 22, 2023Jun 22, 2023

• mCBF

  Public
  Jupyter Notebook

  •

  Creative Commons Zero v1.0 Universal

  •1•14•2•0•Updated Jun 19, 2023Jun 19, 2023

• AutoHeadFix

  Public
  Automated control of behavioural apparatus and brain imaging for mice in a home cage environment.

  Python

  •

  GNU General Public License v3.0

  •10•4•0•1•Updated May 18, 2023May 18, 2023

• whitepaper

  Public
  The UBC Brain Circuits Cluster Data Management White Paper

  Python

  •

  Apache License 2.0

  •1•2•0•0•Updated Nov 22, 2022Nov 22, 2022

• datajoint_docker_fiberphotometry_conversion

  Public
  Python

  •0•0•0•0•Updated Aug 29, 2022Aug 29, 2022

• datachampions-R-part2

  Public
  0•0•1•0•Updated Jul 13, 2022Jul 13, 2022

• ninc-thorlab-telesto-example

  Public
  Example script of how to read Thorlabs OCT data into matlab.

  MATLAB

  •0•0•0•0•Updated Jul 13, 2022Jul 13, 2022

• DMCBH_OS_Survey

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 8, 2022Jun 8, 2022

• tdt_to_nwb

  Public
  Python

  •0•0•0•0•Updated Jun 7, 2022Jun 7, 2022

• Caiman_NWB_Script

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Apr 29, 2022Apr 29, 2022

• accelnet-jupyternotebooks-dimensionality

  Public
  This repository includes code and Jupyter notebooks in order to be able to explore the dimensionality of complex neurological systems in the brain based on the participation ratio and correlation dimensions.

  Jupyter Notebook

  •0•0•0•0•Updated Apr 28, 2022Apr 28, 2022

• UBC-DBC-NWB

  Public
  Scripts for converting raw data acquired as well as analyzed data to an NWB format.

  Jupyter Notebook

  •0•0•0•0•Updated Apr 28, 2022Apr 28, 2022

• Napari

  Public
  Napari is an open-source Python library for visualizing multi-dimensional datasets. This allows for seamless integration with the commonly used scientific Python libraries (scikit-learn, scikit-image, Numpy, etc).

  Jupyter Notebook

  •0•0•0•0•Updated Apr 27, 2022Apr 27, 2022

• LockDoor_Latch_AHF_Headfix

  Public
  Python

  •0•0•0•0•Updated Apr 25, 2022Apr 25, 2022

• BCCHRI-DBC-ICORD-R-Workshop-2022

  Public
  This repository holds all of the material for an introductory R workshop run by a joint effort between the BC Children's Hospital Research Institute, the International Collaboration on Repair Discovery, and the Djavad Mowafaghian Centre for Brain Health.

  0•0•0•0•Updated Mar 25, 2022Mar 25, 2022