Open Problems in Single-Cell Analysis

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30 packages

base_python
Published Jun 13, 2023 by Open Problems in Single-Cell Analysis in openproblems-bio/base_images

85.6k
base_r
Published Jun 13, 2023 by Open Problems in Single-Cell Analysis in openproblems-bio/base_images

24.7k
h5ad/extract_uns_metadata
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

7.49k
schema/verify_data_structure
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

1.06k
utils/extract_uns_metadata
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

1.06k
metrics/regression_1
Published Jul 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

934
metrics/regression_2
Published Aug 1, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

836
metrics/kbet
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

762
data_processors/transform
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

757
metrics/clustering_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

737
metrics/isolated_label_asw
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

712
metrics/lisi
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

704
metrics/asw_label
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

700
metrics/pcr
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

695
metrics/isolated_label_f1
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

695
metrics/cell_cycle_conservation
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

693
metrics/asw_batch
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

691
metrics/graph_connectivity
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

686
metrics/ks_statistic_sc_features
Published Aug 15, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

646
process_datasets/generate_sim_spatialcluster
Published Aug 28, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

615
metrics/ks_statistic_gene_cell
Published Jul 26, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

604
common/extract_metadata
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

589
metrics/ks_statistic_spatial
Published Aug 6, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

585
metrics/poisson
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

478
metrics/density_preservation
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

468
metrics/mse
Published Jul 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

451
metrics/distance_correlation
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

416
robustness_analysis/noise_grn
Published Aug 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

400
metrics/coranking
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

376
metrics/clustering_performance
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

371