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    15 repositories

    • MiM_NikonTi

      Public
      Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.
      microscopymicro-managernikon-eclipse-ti
      C++
      •6•21•0•0•Updated Jul 8, 2024Jul 8, 2024

    • RealTrace

      Public
      C++
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated May 3, 2024May 3, 2024

    • vngMoM

      Public
      Tools for analysing MoMA data in R
      R
      •
      Other
      •1•0•1•0•Updated May 2, 2024May 2, 2024

    • cellstates

      Public
      Finding gene expression states in scRNA-seq data
      Jupyter Notebook
      •
      MIT License
      •6•48•10•0•Updated Mar 22, 2024Mar 22, 2024

    • moma

      Public
      MoMA - the MotherMachine Analyzer
      Java
      •0•0•6•0•Updated Feb 13, 2024Feb 13, 2024

    • moma-model

      Public
      U-Net models used with MoMA
      0•0•0•0•Updated Oct 1, 2023Oct 1, 2023

    • moma-module

      Public
      Module files for setting up MoMA using Lmod
      Shell
      •0•0•0•0•Updated Sep 28, 2023Sep 28, 2023

    • moma-preprocessing

      Public
      Python image preprocessing for MoMA data.
      Python
      •0•0•0•0•Updated Sep 21, 2023Sep 21, 2023

    • moma-preprocessing-module

      Public
      Module files for setting up moma preprocessing using Lmod
      Shell
      •0•0•0•0•Updated Sep 19, 2023Sep 19, 2023

    • moma-batch-run

      Public
      A script to script the processing of large sets of growthlanes using MoMA.
      Python
      •0•0•0•0•Updated Sep 19, 2023Sep 19, 2023

    • MoMA-tmp

      Public
      0•0•0•0•Updated Aug 10, 2023Aug 10, 2023

    • Sanity

      Public
      Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
      MATLAB
      •
      GNU General Public License v3.0
      •12•0•0•0•Updated Jan 31, 2022Jan 31, 2022

    • E-Flow

      Public
      vngFCM is a package designed to analyse fluocytometry data of small bacterial cells.
      statistical-analysisdata-analysisfcmfluorescencefacsfluocytometrycantobacterial-cells
      R
      •2•3•0•0•Updated Oct 12, 2019Oct 12, 2019

    • MoMA_workshop_1

      Public
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 25, 2017Apr 25, 2017

    • MoMA-legacy

      Public
      MoMA - the MotherMachine Analyzer
      Java
      •7•1•0•0•Updated Aug 5, 2016Aug 5, 2016