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    49 repositories

    • ms-lesion-agnostic

      Public
      Deep Learning contrasts "agnostic" tool for MS lesion segmentation in the spinal cord
      Python
      •
      MIT License
      •0•5•22•3•Updated Dec 19, 2024Dec 19, 2024

    • model-gm-contrast-region-agnostic

      Public
      MIT License
      •0•0•5•0•Updated Dec 17, 2024Dec 17, 2024

    • model_seg_sci

      Public
      Deep-learning based segmentation of the spinal cord and intramedually lesions in traumatic and non-traumatic SCI
      Python
      •
      MIT License
      •2•13•7•3•Updated Dec 16, 2024Dec 16, 2024

    • model-canal-seg

      Public
      Python
      •
      MIT License
      •0•0•8•0•Updated Dec 14, 2024Dec 14, 2024

    • MetricsReloaded

      Public
      A fork of the Project-MONAI/MetricsReloaded repo
      Python
      •
      Apache License 2.0
      •9•3•5•3•Updated Dec 12, 2024Dec 12, 2024

    • model-spinal-rootlets

      Public
      Deep-learning based segmentation of the spinal nerve rootlets
      Jupyter Notebook
      •2•5•22•2•Updated Dec 10, 2024Dec 10, 2024

    • lumbar-T2star-GMseg

      Public
      Python
      •0•0•3•0•Updated Dec 5, 2024Dec 5, 2024

    • model-seg-ms-axial-t2w

      Public
      Deep-learning based segmentation of the spinal cord lesion project
      Python
      •
      MIT License
      •2•1•0•1•Updated Dec 2, 2024Dec 2, 2024

    • canproco

      Public
      Code for preprocessing the CanProCo brain and spinal cord dataset
      Jupyter Notebook
      •
      MIT License
      •1•4•38•2•Updated Nov 28, 2024Nov 28, 2024

    • ivadomed

      Public
      Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.
      Python
      •
      MIT License
      •149•156•258•46•Updated Nov 21, 2024Nov 21, 2024

    • utilities

      Public
      Repository containing utility scripts for handling various aspects in a DL model training pipeline
      nn-unet
      Python
      •
      MIT License
      •0•8•10•3•Updated Oct 18, 2024Oct 18, 2024

    • model_seg_ms_mp2rage

      Public
      Model repository for MS lesion segmentation on MP2RAGE data from University of Basel
      model-ivadomed
      Jupyter Notebook
      •
      MIT License
      •0•2•24•0•Updated Oct 15, 2024Oct 15, 2024

    • Counterfactual_synthesis_for_lesion_segmentation

      Public
      Jupyter Notebook
      •1•1•3•0•Updated Jul 19, 2024Jul 19, 2024

    • Bidsification

      Public
      0•1•3•0•Updated Jul 9, 2024Jul 9, 2024

    • model_seg_exvivo_gm-wm_t2_unet2d-multichannel-softseg

      Public
      Grey and white matters segmentation on exvivo T2 human data.
      0•0•6•0•Updated Apr 24, 2024Apr 24, 2024

    • model-seg-dcm

      Public
      Segmentation of lesions on MRI scans in patients with Degenerative Cervical Myelopathy (DCM)
      Shell
      •
      MIT License
      •0•3•8•4•Updated Apr 12, 2024Apr 12, 2024

    • model_seg_mouse-sc_wm-gm_t1

      Public
      White and grey matter segmentation on T1-weighted exvivo mouse spinal cord
      mrisegmentationgray-matterwhite-matterspinal-cord
      Python
      •
      MIT License
      •1•2•15•2•Updated Mar 14, 2024Mar 14, 2024

    • data-testing

      Public
      Light-weighted data for testing/tutorial
      2•1•4•1•Updated Jan 30, 2024Jan 30, 2024

    • t2star_sc

      Public
      0•0•0•0•Updated Oct 4, 2023Oct 4, 2023

    • lumbar_seg_EPFL

      Public
      Model repository for lumbar segmentation from EPFL data
      Shell
      •
      MIT License
      •0•1•3•0•Updated Oct 4, 2023Oct 4, 2023

    • multimodal-registration

      Public
      Repository for training and using a contrast agnostic registration model based on the work done in SynthMorph. The contrast agnostic registration model may later be used in IvadoMed’s pipeline.
      Python
      •1•9•1•3•Updated Sep 5, 2023Sep 5, 2023

    • anima-bin

      Public
      pip version of https://anima.readthedocs.io
      Python
      •
      Other
      •1•0•0•0•Updated Jul 11, 2023Jul 11, 2023

    • microscopy-segmentation-monai

      Public
      Axon and myelin segmentation of SEM images
      axonmyelinhistologysegmentation-modelsmodel-monai
      Jupyter Notebook
      •0•1•2•0•Updated Apr 1, 2023Apr 1, 2023

    • model_sc_centerline

      Public
      Repository for automated spinal cord centerline detection using deep learning
      MIT License
      •0•2•5•1•Updated Feb 9, 2023Feb 9, 2023

    • model_seg_csf_epi

      Public
      Model repository for spinal cord csf segmentation on EPI data
      Python
      •0•2•1•2•Updated Jan 6, 2023Jan 6, 2023

    • mice_uqueensland_gm

      Public
      1•0•0•0•Updated Dec 6, 2022Dec 6, 2022

    • mice_uqueensland_sc

      Public
      0•0•1•0•Updated Dec 5, 2022Dec 5, 2022

    • federated-learning

      Public
      Python
      •0•0•0•0•Updated Aug 20, 2022Aug 20, 2022

    • ms-challenge-2021

      Public
      MS segmentation challenge
      Python
      •
      MIT License
      •0•12•13•2•Updated Aug 10, 2022Aug 10, 2022

    • pybids

      Public
      Python tools for querying and manipulating BIDS datasets.
      Python
      •
      MIT License
      •124•0•0•0•Updated Jul 12, 2022Jul 12, 2022