Repositories list

• include-linkml

  Public
  LinkML Schema for INCLUDE DCC

  Python

  •

  MIT License

  •4•3•83•3•Updated Dec 3, 2024Dec 3, 2024

• include-portal-ui

  Public
  TypeScript

  •

  Apache License 2.0

  •2•0•0•9•Updated Dec 3, 2024Dec 3, 2024

• include-model-forge

  Public
  GLSL

  •

  Apache License 2.0

  •0•1•1•1•Updated Nov 22, 2024Nov 22, 2024

• clinical_data_model_etl

  Public
  Harmonize clinical data to data model

  HTML

  •0•0•1•0•Updated Nov 16, 2024Nov 16, 2024

• whistle-ingest-modular

  Public
  0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• Data-Harmonization-and-QC-Team

  Public
  Repository for tracking data harmonization and quality control efforts for the INCLUDE Data Coordinating Center's Data Management Core (DMC).

  0•1•19•0•Updated Nov 13, 2024Nov 13, 2024

• harmonica

  Public
  Tooling to harmonize condition data to ontology terms.

  Python

  •

  MIT License

  •0•1•0•0•Updated Nov 5, 2024Nov 5, 2024

• include-app-drs-registration

  Public
  Python

  •

  Mozilla Public License 2.0

  •0•0•0•0•Updated Oct 8, 2024Oct 8, 2024

• harmonium

  Public
  Human Guided Data Harmonization

  0•0•0•0•Updated Sep 6, 2024Sep 6, 2024

• whistle-ingest-linkml

  Public
  Whistle ingest based on the linkml model

  Python

  •0•1•0•0•Updated Aug 26, 2024Aug 26, 2024

• smolder

  Public
  Python

  •0•0•1•1•Updated Aug 20, 2024Aug 20, 2024

• include-fhir-access

  Public
  Overview of how users might access the INCLUDE FHIR servers

  0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

• ontology_mappings

  Public
  Code and resources for handling ontology mappings

  Jupyter Notebook

  •0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

• include-users-api

  Public archive
  API to manage Include users

  TypeScript

  •

  Apache License 2.0

  •0•0•0•25•Updated Aug 17, 2023Aug 17, 2023

• data-models

  Public
  Data models for INCLUDE Data Curator app

  1•1•0•0•Updated May 10, 2023May 10, 2023

• DMC_V3_Roadmap

  Public
  Board for May Release Roadmap

  0•0•9•0•Updated Apr 24, 2023Apr 24, 2023

• data_curator

  Public
  Data Ingest Shiny App

  R

  •

  Apache License 2.0

  •21•0•0•0•Updated Feb 7, 2023Feb 7, 2023

• DMC_v3_tasks

  Public
  Issues for DMC v3 project board

  0•0•30•0•Updated Jan 19, 2023Jan 19, 2023

• inc-portal-model

  Public
  Portal model Whistler Project to ETL include data into FHIR

  Python

  •0•0•6•0•Updated Nov 3, 2022Nov 3, 2022

• ds-connect-whistle

  Public
  Whistle projector for ingesting DS-Connect into FHIR

  Python

  •0•0•3•0•Updated Jul 28, 2022Jul 28, 2022

• htp-whistle

  Public
  Whistle projections for ingesting HTP data into FHIR

  0•0•0•0•Updated Jun 24, 2022Jun 24, 2022

• include-keyckloak-ext

  Public archive
  Include Keycloak Extension

  Java

  •0•0•0•0•Updated Mar 23, 2022Mar 23, 2022

• FHIR-Utils

  Public
  Scripts used to help with ingestion into FHIR for various datasets

  Python

  •0•0•0•0•Updated Mar 7, 2022Mar 7, 2022

• kf-etl-clin-portal

  Public
  Import clinical data into portal

  Apache License 2.0

  •3•0•0•0•Updated Nov 24, 2021Nov 24, 2021

• projectLive_include

  Public
  R

  •

  Other

  •1•0•0•0•Updated Nov 11, 2021Nov 11, 2021

• fhir-ingest-htp

  Public
  scripts used to load HTP data into KF dev FHIR server

  Python

  •0•0•0•0•Updated Oct 29, 2021Oct 29, 2021

• clinical-include-r

  Public archive
  Shiny application that displays clinical data

  R

  •0•0•0•0•Updated Oct 8, 2021Oct 8, 2021

• include-shiny-template

  Public template
  🚧 Repo template for INCLUDE Shiny apps

  R

  •0•0•3•0•Updated Sep 3, 2021Sep 3, 2021

• pub-include-r

  Public
  Tools to aggregate and Shiny app to explore INCLUDE publications and associated datasets

  R

  •

  Other

  •0•0•0•0•Updated Jul 22, 2021Jul 22, 2021