Repositories list

• simple-VQ-matching-O2-transport

  Public
  A suite of models representing pulmonary oxygen transport. Intended to explore how airflow and blood affects oxygen uptake

  MATLAB

  •1•0•0•0•Updated Jan 8, 2025Jan 8, 2025

• TitinViscoelasticity

  Public
  Codes accompanying paper titled Mesoscopic Scale Analysis of Titin-Mediated Viscoelastic Passive Muscle Mechanics

  MATLAB

  •

  MIT License

  •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

• TriSeg-Digital-Twins

  Public
  This repository contains the identification of digital twins for the manuscript Identification of Digital Twins to Guide Interpretable AI for Diagnosis and Prognosis in Heart Failure by Feng et al

  MATLAB

  •

  MIT License

  •1•1•0•0•Updated Dec 11, 2024Dec 11, 2024

• Data-Analytics-for-Biomedical-Research

  Public
  A handy jupyter notebook with a lot of useful stuff

  Jupyter Notebook

  •1•0•0•0•Updated Dec 6, 2024Dec 6, 2024

• MachineLearningOnHFData

  Public
  MATLAB

  •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

• Phys520

  Public
  Physiology/Bioinformatics 520: Computational Systems Biology for Physiologists

  46•5•0•0•Updated Sep 6, 2024Sep 6, 2024

• Lumped-Myocardial-Oxygen-Transport

  Public
  Computer codes associated with Sturgess et al. "Integrated modeling and simulation of recruitment of myocardial perfusion and oxygen delivery in exercise".

  MATLAB

  •0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

• PHYSIOL-520-Git

  Public
  0•0•0•0•Updated Jan 12, 2023Jan 12, 2023

• CVS_KimRandall

  Public
  MATLAB

  •

  MIT License

  •0•0•0•0•Updated Oct 21, 2022Oct 21, 2022

• Multiscale-Coronary-Flow-Control

  Public
  Multiscale model of the physiological control of myocardial perfusion

  MATLAB

  •1•0•0•0•Updated Oct 6, 2022Oct 6, 2022

• Bodylight-VirtualMachine

  Public
  Exemplar scripts and configuration files to build exemplar virtual machine from scratch containing last development version of all tolls in bodylight toolchain (Bodylight.js components and all dependencies).

  JavaScript

  •

  MIT License

  •3•0•1•0•Updated Oct 4, 2022Oct 4, 2022

• Whole-body-cardiovascular

  Public
  Scripts and models to simulate Valsalva maneuver.

  Modelica

  •3•0•0•0•Updated Aug 8, 2022Aug 8, 2022

• Calcium-dynamics-rat-cardiomyocyte

  Public
  Codes for calcium regulation model published in https://iopscience.iop.org/article/10.1088/1478-3975/12/5/056008

  MATLAB

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Jul 8, 2022Jul 8, 2022

• Cardiac-Crossbridge-Explicit-Space-Discretization

  Public
  MATLAB

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 14, 2022Jun 14, 2022

• Rat-Cardiac-Energetic

  Public
  MATLAB

  •2•0•0•0•Updated Jul 29, 2021Jul 29, 2021

• CellML2Modelica

  Public
  Experimental translation of the CellML 1.1 (including the imports) to the Modelica language

  Modelica

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Jun 21, 2021Jun 21, 2021

• QAMAS_book

  Public
  This is Jupyter book for the manuscript "Quantitative analysis of mitochondrial ATP synthesis"

  Jupyter Notebook

  •

  MIT License

  •2•2•0•0•Updated Jun 9, 2021Jun 9, 2021

• Python-CrossBridge-Model-Rat-2019

  Public
  Cross Bridge Model

  Jupyter Notebook

  •2•0•0•1•Updated Mar 4, 2020Mar 4, 2020

• VQmodel

  Public
  A computational model of ventilation-perfusion (V/Q) matching. Implemented in MATLAB. Consists of realistic vascular networks, hemodynamics, oxygen transport, and regulation by the physiological mechanism of hypoxic pulmonary vasoconstriction (HPV)

  MATLAB

  •2•1•0•0•Updated Feb 7, 2020Feb 7, 2020

• Cross-Brigde--Human

  Public
  Version 1

  MATLAB

  •0•0•0•0•Updated Jan 29, 2020Jan 29, 2020

• CrossBridgeMATLAB

  Public
  MATLAB

  •1•0•0•0•Updated Apr 22, 2019Apr 22, 2019