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@RTXteam Development team for the RTX biomedical reasoning tool

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    18 repositories

    • RTX

      Public
      Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
      ncats-translator
      Python
      •
      MIT License
      •21•33•112•1•Updated Nov 26, 2024Nov 26, 2024

    • PloverDB

      Public
      An in-memory database service for hosting and serving biomedical knowledge graphs as TRAPI APIs
      Python
      •
      MIT License
      •4•1•3•0•Updated Nov 24, 2024Nov 24, 2024

    • RTX-KG2

      Public
      Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
      ncats-translator
      Python
      •
      MIT License
      •8•39•193•0•Updated Nov 20, 2024Nov 20, 2024

    • xDTD_training_pipeline

      Public
      This repo is created for hosting a pipeline for automatically training xDTD model.
      Python
      •
      MIT License
      •3•1•0•0•Updated Nov 11, 2024Nov 11, 2024

    • xCRG_training_pipeline

      Public
      0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • NL2TRAPI

      Public
      A prototype investigation of converting natural language questions to the TRAPI format
      Python
      •
      MIT License
      •1•1•0•0•Updated Feb 23, 2024Feb 23, 2024

    • DrugConflator

      Public
      Tool to find the "essential drug" corresponding to any biolink:ChemicalEntity
      Python
      •0•0•0•0•Updated Jul 5, 2023Jul 5, 2023

    • ScoringAnalysis

      Public
      Code to parse ARS results dump and extract ARA scores
      Jupyter Notebook
      •0•0•0•0•Updated Apr 12, 2023Apr 12, 2023

    • translator-developer-documentation

      Public
      Official Developer Documentation repository for the Biomedical Data Translator: https://translator-developer-documentation.readthedocs.io/en/latest/
      Creative Commons Zero v1.0 Universal
      •17•0•0•0•Updated Mar 29, 2023Mar 29, 2023

    • result-merging

      Public
      TRAPI Response merging
      Python
      •0•0•0•0•Updated Aug 2, 2022Aug 2, 2022

    • translator-lfs-artifacts

      Public
      NCATS Biomedical Data Translator repository for shared, large file access
      3•0•0•0•Updated Aug 4, 2021Aug 4, 2021

    • d2s-docs

      Public
      📖 Home for the Data2Services project documentation
      JavaScript
      •
      Creative Commons Attribution 4.0 International
      •5•0•0•0•Updated May 25, 2021May 25, 2021

    • umls2rdf

      Public
      These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.
      Python
      •
      Other
      •37•0•0•0•Updated Feb 11, 2021Feb 11, 2021

    • mediKanren

      Public
      Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.
      Racket
      •
      MIT License
      •53•0•0•0•Updated Feb 4, 2021Feb 4, 2021

    • translator-testing-framework

      Public
      A testing framework for Translator using tests written in Behave
      Gherkin
      •
      BSD 3-Clause "New" or "Revised" License
      •14•0•0•0•Updated Jan 1, 2020Jan 1, 2020

    • kgx

      Public
      Knowledge Graph Exchange tools for BioLink model-compliant graphs
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •28•0•0•0•Updated Dec 8, 2019Dec 8, 2019

    • owltools

      Public
      OWLTools
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •33•0•0•0•Updated Apr 5, 2019Apr 5, 2019

    • robot

      Public
      ROBOT is an OBO Tool
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •74•0•0•0•Updated Mar 19, 2019Mar 19, 2019